BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (352 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780964|ref|YP_003065377.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/352 (100%), Positives = 352/352 (100%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ Sbjct: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD Sbjct: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID Sbjct: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA Sbjct: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD Sbjct: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 >gi|254780845|ref|YP_003065258.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 352 Score = 741 bits (1914), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/352 (100%), Positives = 352/352 (100%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ Sbjct: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD Sbjct: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGTKD 180 Query: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID Sbjct: 181 ADQEFLQDLFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLHLNFGID 240 Query: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA Sbjct: 241 VINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGLNAPSCEQYMQFIA 300 Query: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD Sbjct: 301 NRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGAELKWD 352 >537021.9.peg.74_1 Length = 196 Score = 366 bits (940), Expect = e-103, Method: Compositional matrix adjust. Identities = 174/174 (100%), Positives = 174/174 (100%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRMLNARSDVNQLLPLKYGWAWEKYLSACNNHWMPTEVP 60 Query: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ Sbjct: 61 MQDDLALWKSKNGLTDDERLMIKRNLGFFASSESLVANNIVLAIYRHLSNPECRQYLLRQ 120 Query: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF Sbjct: 121 AFEEAVHSHTFQYIITSLGLDEGELFNMYREVPSITAKANWALQYTQTLSSPSF 174 >537021.9.peg.75_1 Length = 136 Score = 288 bits (736), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 135/136 (99%), Positives = 135/136 (99%) Query: 217 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 276 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA Sbjct: 1 MVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYA 60 Query: 277 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 336 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF Sbjct: 61 HETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFF 120 Query: 337 ETRVTEYQQGAELKWD 352 ETRVTEYQQGA LKWD Sbjct: 121 ETRVTEYQQGAGLKWD 136 >gi|254781006|ref|YP_003065419.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 125 Score = 268 bits (684), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 125/125 (100%), Positives = 125/125 (100%) Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL Sbjct: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA Sbjct: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120 Query: 348 ELKWD 352 ELKWD Sbjct: 121 ELKWD 125 >gi|254780136|ref|YP_003064549.1| ribonucleotide-diphosphate reductase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 125 Score = 268 bits (684), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 125/125 (100%), Positives = 125/125 (100%) Query: 228 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 287 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL Sbjct: 1 MRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHEATLLEIAYAHETMPKGFVGL 60 Query: 288 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 347 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA Sbjct: 61 NAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEVIDLKKEKNFFETRVTEYQQGA 120 Query: 348 ELKWD 352 ELKWD Sbjct: 121 ELKWD 125 >gi|254781153|ref|YP_003065566.1| hypothetical protein CLIBASIA_05300 [Candidatus Liberibacter asiaticus str. psy62] Length = 30 Score = 54.7 bits (130), Expect = 2e-09, Method: Composition-based stats. Identities = 24/25 (96%), Positives = 25/25 (100%) Query: 1 MANNTGLSPIQAGEKRVNVDDKRML 25 MANNTGLSPIQAGEKRVNVDDKR+L Sbjct: 1 MANNTGLSPIQAGEKRVNVDDKRIL 25 >537021.9.peg.612_1 Length = 53 Score = 33.1 bits (74), Expect = 0.006, Method: Compositional matrix adjust. Identities = 14/17 (82%), Positives = 15/17 (88%) Query: 327 IDLKKEKNFFETRVTEY 343 +DLKKE NFFETR TEY Sbjct: 37 MDLKKENNFFETRTTEY 53 >gi|255764469|ref|YP_003064807.2| putative permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 361 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 11/121 (9%) Query: 120 QAFEEAVHSHTFQYIITSLGL-DEGELFNMYREVPSITAKANWALQYTQTLSSPSFTTGT 178 Q F E S +F II + ++ +F+ YR A+ + L + T Sbjct: 238 QKFSEQFASRSFYEIIKKMSFSNKSNIFHNYR------AETQFYFLIVIPLMLVAMTLIA 291 Query: 179 KDADQEFLQD----LFVFYVVFEGMWFYTGFAQILSLGRANKMVGIAEQYQYIMRDESLH 234 EF + + V Y +F G YT + S G++ ++ +A ++ SL Sbjct: 292 ASVSLEFSRSNQPRIIVAYGIFSGFMLYTIITIMKSFGKSGILLPVAAALIPVILTISLS 351 Query: 235 L 235 + Sbjct: 352 I 352 >gi|254781122|ref|YP_003065535.1| putative thiamine pyrophosphokinase [Candidatus Liberibacter asiaticus str. psy62] Length = 222 Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Query: 215 NKMVGIAEQYQYIMRDESLHLNFGIDVINQIKIENPHLWTKEFQQKSRTMLHE 267 N+++ E + I D GI +Q+K+ P LW +F RT+L + Sbjct: 24 NRLLCAIESCKVIAADG------GICHASQLKVV-PELWIGDFDSVDRTLLQQ 69 >gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter asiaticus str. psy62] Length = 762 Score = 23.5 bits (49), Expect = 5.4, Method: Compositional matrix adjust. Identities = 11/45 (24%), Positives = 21/45 (46%) Query: 282 KGFVGLNAPSCEQYMQFIANRRCHQIGLEPLFKYTENPFPWMSEV 326 +G + A + E+Y++ I N H + L +T+N F + Sbjct: 518 EGIAQVYAATDEKYIKTIPNEDSHSLVLNSTSLFTQNRFSGFDRI 562 >gi|254780720|ref|YP_003065133.1| Ferroxidase [Candidatus Liberibacter asiaticus str. psy62] Length = 164 Score = 23.5 bits (49), Expect = 6.3, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 7/47 (14%) Query: 113 CRQYLLRQAFEEAVHSHTFQYI--ITSLGLDEGELFNMYREVPSITA 157 C +LL+ A EE HSH + +T LG+ E + ++ E P I+A Sbjct: 38 CCNFLLKHAMEE--HSHVIRIFKHLTDLGV-EAKFSSI--EAPVISA 79 >gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 957 Score = 23.1 bits (48), Expect = 6.9, Method: Compositional matrix adjust. Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 10/55 (18%) Query: 266 HEATLLEIAYAH----------ETMPKGFVGLNAPSCEQYMQFIANRRCHQIGLE 310 H+ L E++ AH + KG +GL + + + + +++ C IG+E Sbjct: 126 HQKDLSELSPAHYGFVKADYDRKICMKGVLGLESATIPEIVDVLSHLYCSNIGVE 180 >gi|254780191|ref|YP_003064604.1| alanyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 898 Score = 22.7 bits (47), Expect = 9.9, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 18/28 (64%) Query: 67 LWKSKNGLTDDERLMIKRNLGFFASSES 94 LWK +GL+ D+ + I N F++ +E+ Sbjct: 139 LWKKISGLSADKIIRITTNDNFWSMAET 166 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.134 0.412 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 228,067 Number of Sequences: 1233 Number of extensions: 9083 Number of successful extensions: 29 Number of sequences better than 100.0: 15 Number of HSP's better than 100.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 16 Number of HSP's gapped (non-prelim): 16 length of query: 352 length of database: 328,796 effective HSP length: 75 effective length of query: 277 effective length of database: 236,321 effective search space: 65460917 effective search space used: 65460917 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)