HHsearch alignment for GI: 254780846 and conserved domain: TIGR00083

>TIGR00083 ribF riboflavin biosynthesis protein RibF; InterPro: IPR002606 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme , the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family . The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases . This entry represents the bifunctional enzyme, FAD synthetase / riboflavin kinase.; GO: 0003919 FMN adenylyltransferase activity, 0008531 riboflavin kinase activity, 0009231 riboflavin biosynthetic process.
Probab=100.00  E-value=0  Score=642.82  Aligned_cols=288  Identities=40%  Similarity=0.667  Sum_probs=267.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH--HHHC--CCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCH
Q ss_conf             9999315650289999999999--9502--79779998379868984788866200007899998851131000225640
Q gi|254780846|r   21 VVAIGNFDGIHLGHHLILEQAI--KIAN--NSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFT   96 (324)
Q Consensus        21 vvtiG~FDGvH~GHq~Li~~~~--~~a~--~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~Gid~vi~~~F~   96 (324)
T Consensus         1 ~L~IG~FDGlH~GHq~l~~~~~df~~A~e~~L~~avllf~~~P~~~~~~~~~P~rL~pL~~k~~~~~~~~~~~~~v~~Fd   80 (296)
T TIGR00083         1 SLAIGYFDGLHLGHQALLQELKDFQKAEEKGLPVAVLLFEPHPSEQFSGLKAPARLTPLEEKARQLEALGVEVLVVVKFD   80 (296)
T ss_pred             CCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC
T ss_conf             91011566523689999986355676876199479998628873440466788645684899999998537738999623


Q ss_pred             HHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHHHHHHHH
Q ss_conf             57752283026888621427802999834553033775560246775101264167615223023330230368999872
Q gi|254780846|r   97 LETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTK  176 (324)
Q Consensus        97 ~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~l~~  176 (324)
T Consensus        81 ~~~a~l~A~~F~~~~~~~~L~~~~l~VG~DF~FG~~r~g~~~~l~~~~~~~~~~v~~-~~~~~~d-~riSSs~IR~aL~~  158 (296)
T TIGR00083        81 EEFANLSAKQFIDQLLVKHLRVKFLVVGDDFRFGKDRQGDFLLLQLAGNETIFTVIV-KQLFCQD-KRISSSAIRQALKN  158 (296)
T ss_pred             HHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEEE-CCCEECC-EEEEHHHHHHHHHC
T ss_conf             576524865558987432677568886166133667876057877404854799974-6613326-04515689876424


Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEEEEEEEHHCCCCCCHHHHEEEEEEEECC--CCCHHCCCCCCCCCCC--
Q ss_conf             589999985000000000122100201101111121100002223101100024763056--5621105789972677--
Q gi|254780846|r  177 GHVLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQT--SYSGVANFGRNPTMVP--  252 (324)
Q Consensus       177 Gdi~~an~lLGr~y~i~G~Vv~G~~~Gr~lGfPTaNi~~~~~~~p~~GVY~~~v~~~~~~--~~~~v~niG~~PT~~~--  252 (324)
T Consensus       159 g~L~lAN~LLg~PY~~~G~Vi~G~~lGR~~GFPTANi~L~~~~~~~~~g~y~~~~~~~~~dv~~~GV~NiG~RPT~~~~~  238 (296)
T TIGR00083       159 GDLELANKLLGRPYAIKGTVIHGQKLGRTLGFPTANIKLKNQVLPLKGGYYVVVVLLNGEDVPYPGVGNIGKRPTFIGKK  238 (296)
T ss_pred             CCHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEECCCEEEEEEEEECCCCCCCCCCC
T ss_conf             84788998548714788789852851040147525645677543047158999985176000330134508876324567


Q ss_pred             CCCEEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9714999994067855189889999460000887468989999999997999999987
Q gi|254780846|r  253 NGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILE  310 (324)
Q Consensus       253 ~~~~~iE~hildf~~dlYg~~i~v~f~~~iR~e~kF~s~~~L~~qI~~D~~~a~~~l~  310 (324)
T Consensus       239 ~~~~~~EvHlldf~~~~YG~~~~~~~~~~IR~~~KF~s~~~Lk~qI~~D~~~A~~~f~  296 (296)
T TIGR00083       239 DQQLVIEVHLLDFSQELYGQEIKVELVKKIRPEQKFSSLDELKKQIEKDLQQAKKFFN  296 (296)
T ss_pred             CCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             8741000001212004786403676543037765773479999999998999999819