HHsearch alignment for GI: 254780846 and conserved domain: TIGR01510

>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase; InterPro: IPR001980 Temperature-sensitive mutants of Escherichia coli, defective in the transfer of 3-deoxy-D-manno-octulosonic acid (KDO) from CMP-KDO to a tetraacyldisaccharide 1,4'-bisphosphate precursor of lipid A, have been used to map KDO transferase activity on the E. coli chromosome . The KDO transferase gene, designated kdtA, was shown to code for a 43kDa polypeptide. Overexpression of this single gene product greatly stimulates incorporation of two stereochemically distinct KDO residues during lipopolysaccharide biosynthesis in extracts of E. coli . From these experiments this protein was thought to play a role in lipopolysaccharide biosynthesis, however now it is annotated as phosphopantetheine adenylyltransferase (2.7.7.3 from EC), which catalyses the reversible transfer of an adenylyl group from ATP to 4'-phosphopantetheine to give dephospho-CoA (DPCOA) and pyrophosphate in the fourth (and penultimate) step of coenzyme A biosynthesis .; GO: 0004595 pantetheine-phosphate adenylyltransferase activity, 0015937 coenzyme A biosynthetic process.
Probab=97.89  E-value=9.9e-06  Score=58.11  Aligned_cols=128  Identities=21%  Similarity=0.244  Sum_probs=79.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC---CC---CCCCCCC
Q ss_conf             99993156502899999999999502797799983798689847888662000078999988511---31---0002256
Q gi|254780846|r   21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKM---GF---SALIRYK   94 (324)
Q Consensus        21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~---Gi---d~vi~~~   94 (324)
T Consensus         2 A~YPGSFDP~T~GHLDiikRa~~lFDeV~Vav-~--------~N~~K~--~~f~~eeR~~~~~~~tk~~l~~~~NV~V~~   70 (163)
T TIGR01510         2 ALYPGSFDPITNGHLDIIKRALKLFDEVIVAV-A--------INPSKK--PLFSLEERVELIEDATKKHLKKIPNVEVDV   70 (163)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHCCEEEEEE-E--------ECCCCC--CCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             55488899874363889999986221777888-8--------748898--568989999999999999723698148984


Q ss_pred             CHHHHHHCCCHHHHHHHHCCCCCEEEEEEC----CCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHH
Q ss_conf             405775228302688862142780299983----4553033775560246775101264167615223023330230368
Q gi|254780846|r   95 FTLETANYSAEQFIQKVLVEWLEVKTVITG----TKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNI  170 (324)
Q Consensus        95 F~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG----~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~I  170 (324)
T Consensus        71 f~~--------~L~Vd-~Ak~~~a~~ivRGlR~~~DFEYE~~~~~~N~~---L--a~eieTVFL~~~~~~--~~~SSs~V  134 (163)
T TIGR01510        71 FDG--------RLLVD-YAKELGATFIVRGLRAVTDFEYELQMALMNQK---L--APEIETVFLMASPEY--AAVSSSLV  134 (163)
T ss_pred             CCC--------CEEEE-EHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH---H--CCCCCEEEECCCCCH--HHHHHHHH
T ss_conf             067--------12121-01366870898601476607899999999997---5--579868972787223--66676788


Q ss_pred             HHHHH
Q ss_conf             99987
Q gi|254780846|r  171 RTALT  175 (324)
Q Consensus       171 R~~l~  175 (324)
T Consensus       135 ke~~~  139 (163)
T TIGR01510       135 KEIAS  139 (163)
T ss_pred             HHHHC
T ss_conf             87507