HHsearch alignment for GI: 254780846 and conserved domain: TIGR02199
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II; InterPro: IPR011914 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. Domain I (IPR011913 from INTERPRO) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=98.39 E-value=1.5e-06 Score=63.45 Aligned_cols=130 Identities=19% Similarity=0.277 Sum_probs=92.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCCC
Q ss_conf 1884999931565028999999999995027977999837986898478886620000789999885113-100022564
Q gi|254780846|r 17 LKGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMG-FSALIRYKF 95 (324)
Q Consensus 17 ~~~~vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viTF~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~G-id~vi~~~F 95 (324)
T Consensus 10 g~kvVFTNGCFDiLH~GHV~YL~~Ar~LGD~LvV-GvNSD~SV~R-LKG--~~RPi~~e~~Ra~vLaaL~~VD~VV--~F 83 (144)
T TIGR02199 10 GKKVVFTNGCFDILHAGHVSYLQQARALGDRLVV-GVNSDASVKR-LKG--ETRPINSEEDRAEVLAALSSVDYVV--IF 83 (144)
T ss_pred CCCEEECCCCCCCCCCCHHHHHHHHHHHCCEEEE-EECCHHHHHC-CCC--CCCCCCCHHHHHHHHHCCCCEEEEE--EC
T ss_conf 8977851773101021137689999971986689-8617045530-576--8989157767899984478500378--63
Q ss_pred HHHHHHCCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHH--HHHHCCCCEEEECCHHHCCCCCCCCHHHHHHH
Q ss_conf 0577522830268886214278029998345530337755602467--75101264167615223023330230368999
Q gi|254780846|r 96 TLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQ--KRGEKYGFHTVFIDELRNNKSQIVSSSNIRTA 173 (324)
Q Consensus 96 ~~~~a~ls~e~Fi~~iL~~~l~~k~ivVG~Df~FG~~r~Gd~~~L~--~~~~~~g~~v~~i~~~~~~~~~~ISSt~IR~~ 173 (324)
T Consensus 84 ~----EDTP~~LI-----~~~~PdilVKGGDY--------~~~~~vg~~~V~~yGG~V~~l~f~-~--g--~STT~ii~k 141 (144)
T TIGR02199 84 D----EDTPEELI-----EELKPDILVKGGDY--------KLEELVGAELVESYGGQVVLLPFV-E--G--RSTTAIIEK 141 (144)
T ss_pred C----CCCHHHHH-----HHHCCCEEEECCCC--------CCCCCCCHHHHHHCCCEEEEEEEE-C--C--CCCHHHHHH
T ss_conf 8----98968999-----86296278504435--------855442448998629979898521-7--9--840789999
Q ss_pred H
Q ss_conf 8
Q gi|254780846|r 174 L 174 (324)
Q Consensus 174 l 174 (324)
T Consensus 142 i 142 (144)
T TIGR02199 142 I 142 (144)
T ss_pred H
T ss_conf 8