HHsearch results for GI: 254780846 and protein with PDBid: 3h05_A
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structural genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=98.56 E-value=4e-07 Score=65.74 Aligned_cols=136 Identities=18% Similarity=0.250 Sum_probs=74.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEE-ECCCHHHHHCCCCCCCCCCHHHHHHHHHHHC----CCCCCCCCCC
Q ss_conf 9999315650289999999999950279779998-3798689847888662000078999988511----3100022564
Q gi|254780846|r 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLS-FNPHPRTIIQSSSPIFTLSPPSIQEKILEKM----GFSALIRYKF 95 (324)
Q Consensus 21 vvtiG~FDGvH~GHq~Li~~~~~~a~~~~~~viT-F~p~P~~~~~~~~~~~~l~~~~~k~~~l~~~----Gid~vi~~~F 95 (324)
++--|.||-+|.||..+++++ .+..-+++. -.++|. +. .+.+.++|.++++.. +...+-+.++
T Consensus 5 ~ifgGsFdP~h~GHl~i~~~~----~~~d~viv~p~~~~~~------k~--~~~~~~~R~~m~~~a~~~~~~~~v~v~~~ 72 (177)
T 3h05_A 5 AIFGSAFNPPSLGHKSVIESL----SHFDLVLLEPSIAHAW------GK--NMLDYPIRCKLVDAFIKDMGLSNVQRSDL 72 (177)
T ss_dssp EEEEECCSSCCHHHHHHHTTC----TTSSEEEEEECC---------------CCCHHHHHHHHHHHHHHHCCTTEEECCH
T ss_pred EEECCCCCHHHHHHHHHHHHH----HHCCEEEEEEECCCCC------CC--CCCCHHHHHHHHHHHHHHHHCCCCEEEEH
T ss_conf 996654554129999999999----7269699982025765------67--87899999999999998731268267544
Q ss_pred HHHHHHCC----CHHHHHHHHCCCCCEE-EEEECCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCCCHHHH
Q ss_conf 05775228----3026888621427802-999834553033775560246775101264167615223023330230368
Q gi|254780846|r 96 TLETANYS----AEQFIQKVLVEWLEVK-TVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNI 170 (324)
Q Consensus 96 ~~~~a~ls----~e~Fi~~iL~~~l~~k-~ivVG~Df~FG~~r~Gd~~~L~~~~~~~g~~v~~i~~~~~~~~~~ISSt~I 170 (324)
+.....-+ ..+.++.+-....+.. .+++|.|.-....+--+.+.|.+. +.+.+++. ...||||.|
T Consensus 73 e~~~~~~~~s~~t~~~l~~l~~~~~~~~~~~iiG~D~~~~~~~W~~~~~i~~~-----~~~~~~pr-----~~~ISST~I 142 (177)
T 3h05_A 73 EQALYQPGQSVTTYALLEKIQEIYPTADITFVIGPDNFFKFAKFYKAEEITER-----WTVMACPE-----KVKIRSTDI 142 (177)
T ss_dssp HHHHC----CCCHHHHHHHHHHHSTTSEEEEEECHHHHHTGGGSTTHHHHHHH-----SEEEECCC-----SSCCCHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCHHHHHHH-----CCEEEECC-----CCCCCHHHH
T ss_conf 43226553312378999988741885031776324067674764278999850-----86798458-----778499999
Q ss_pred HHHHHHHH
Q ss_conf 99987258
Q gi|254780846|r 171 RTALTKGH 178 (324)
Q Consensus 171 R~~l~~Gd 178 (324)
|+.+..|.
T Consensus 143 R~~l~~g~ 150 (177)
T 3h05_A 143 RNALIEGK 150 (177)
T ss_dssp HHHHHHTC
T ss_pred HHHHHCCC
T ss_conf 99998599