RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780846|ref|YP_003065259.1| bifunctional riboflavin
kinase/FMN adenylyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
         (324 letters)



>gnl|CDD|30545 COG0196, RibF, FAD synthase [Coenzyme metabolism].
          Length = 304

 Score =  272 bits (698), Expect = 8e-74
 Identities = 125/311 (40%), Positives = 187/311 (60%), Gaps = 13/311 (4%)

Query: 1   MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPH 58
           +   HNI  +      L+G V+ IGNFDG+HLGH  +L QA++ A     P+ V++F PH
Sbjct: 4   IRGTHNIPED------LRGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPH 57

Query: 59  PRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEV 118
           PR +++   P   L+P   + ++L   G  AL+   F LE AN SAE+F++ +LVE L V
Sbjct: 58  PRELLKPDKPPTRLTPLREKIRLLAGYGVDALVVLDFDLEFANLSAEEFVE-LLVEKLNV 116

Query: 119 KTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGH 178
           K ++ G  FRFGK R G+  +L++ G+K GF    + ++       +SS+ IR AL +G 
Sbjct: 117 KHIVVGFDFRFGKGRQGNAELLRELGQK-GFEVTIVPKINEEG-IRISSTAIRQALREGD 174

Query: 179 VLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSY 238
           +  A  LLG  ++IE  V+HG+K+GRTLGFPTAN+ L  ++L   GVYA+R +      Y
Sbjct: 175 LEEANKLLGRPYSIEGKVVHGQKLGRTLGFPTANIYLKDNVLPAFGVYAVRVKLDGGV-Y 233

Query: 239 SGVANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYM 298
            GVAN G  PT+       LE  I DF+ ++YG+R  V F  ++R E KF  +++LK  +
Sbjct: 234 PGVANVGYRPTVD-GSERSLEVHILDFNGDLYGERVKVRFLKFIRDEKKFDSLDELKEQI 292

Query: 299 GEDEKKARKIL 309
            +D ++ARK+L
Sbjct: 293 EKDIERARKLL 303


>gnl|CDD|185679 cd02064, FAD_synthetase_N, FAD synthetase, N-terminal domain of the
           bifunctional enzyme.  FAD synthetase_N.  N-terminal
           domain of the bifunctional riboflavin biosynthesis
           protein riboflavin kinase/FAD synthetase. These enzymes
           have both ATP:riboflavin 5'-phosphotransferase and
           ATP:FMN-adenylyltransferase activities.  The N-terminal
           domain is believed to play a role in the adenylylation
           reaction of FAD synthetases. The C-terminal domain is
           thought to have kinase activity.  FAD synthetase is
           present among all kingdoms of life.  However, the
           bifunctional enzyme is not found in mammals, which use
           separate enzymes for FMN and FAD formation.
          Length = 180

 Score =  173 bits (441), Expect = 5e-44
 Identities = 74/181 (40%), Positives = 108/181 (59%), Gaps = 4/181 (2%)

Query: 21  VVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQ 78
           VVAIGNFDG+HLGH  +++   KIA     P  VL+F+PHPR +         L+    +
Sbjct: 2   VVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEK 61

Query: 79  EKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRG 138
            ++LE +G   L+   F  E A+ SAE+F++ +LV+ L  K V+ G  FRFGK R+GD  
Sbjct: 62  LELLESLGVDYLLVLPFDKEFASLSAEEFVEDLLVK-LNAKHVVVGFDFRFGKGRSGDAE 120

Query: 139 ILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIH 198
           +L++ G+KYGF    +  +  +  + VSS+ IR AL +G V  A  LLG  ++IE  V+H
Sbjct: 121 LLKELGKKYGFEVTVVPPVTLD-GERVSSTRIREALAEGDVELANELLGRPYSIEGRVVH 179

Query: 199 G 199
           G
Sbjct: 180 G 180


>gnl|CDD|145043 pfam01687, Flavokinase, Riboflavin kinase.  This family represents
           the C-terminal region of the bifunctional riboflavin
           biosynthesis protein known as RibC in Bacillus subtilis.
           The RibC protein from Bacillus subtilis has both
           flavokinase and flavin adenine dinucleotide synthetase
           (FAD-synthetase) activities. RibC plays an essential
           role in the flavin metabolism. This domain is thought to
           have kinase activity.
          Length = 125

 Score =  150 bits (382), Expect = 4e-37
 Identities = 59/127 (46%), Positives = 78/127 (61%), Gaps = 3/127 (2%)

Query: 185 LLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILL-KEGVYAIRFRTQDQTSYSGVAN 243
           LLG  ++I   V+HG+  GRTLGFPTAN+ L  D LL K GVYA+R +   +  Y GVAN
Sbjct: 1   LLGRPYSISGTVVHGKGRGRTLGFPTANLSLPKDKLLPKNGVYAVRVKIDGKV-YPGVAN 59

Query: 244 FGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEK 303
            G NPT        +E  I DF  ++YG+   V F  +LRPE KF  +E+LK  + +D +
Sbjct: 60  IGVNPT-FGGTKPTIEVHILDFDGDLYGEEIRVEFLKFLRPEKKFDSLEELKAQIEKDIE 118

Query: 304 KARKILE 310
           +ARKIL 
Sbjct: 119 QARKILA 125


>gnl|CDD|38320 KOG3110, KOG3110, KOG3110, Riboflavin kinase [Coenzyme transport
           and metabolism].
          Length = 153

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 188 YRFTIESDVIHG-EKIGRTLGFPTANMQLS--PDIL--LKEGVYAIRFRTQDQTSYSGVA 242
                  +V+ G  +  + LG PTAN   +  P +   L  GVY           +  V 
Sbjct: 11  LPLFFGGEVVRGFGRGSKELGIPTANFPENVVPKLPEDLPSGVYFGWAHVDKGDVFKMVM 70

Query: 243 NFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDE 302
           + G NP        +    I DF ++ YG+   V    Y+RPE+ F  +E L   +  D 
Sbjct: 71  SIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDI 130

Query: 303 KKARKILES 311
           + A+K+L+ 
Sbjct: 131 EVAKKVLDL 139


>gnl|CDD|185678 cd02039, cytidylyltransferase_like, Cytidylyltransferase-like
           domain.  Cytidylyltransferase-like domain. Many of these
           proteins are known to use CTP or ATP and release
           pyrophosphate. Protein families that contain at least
           one copy of this domain include citrate lyase ligase,
           pantoate-beta-alanine ligase, glycerol-3-phosphate
           cytidyltransferase, ADP-heptose synthase, phosphocholine
           cytidylyltransferase, lipopolysaccharide core
           biosynthesis protein KdtB, the bifunctional protein
           NadR, and a number whose function is unknown.
          Length = 143

 Score = 37.4 bits (87), Expect = 0.006
 Identities = 28/157 (17%), Positives = 60/157 (38%), Gaps = 19/157 (12%)

Query: 21  VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK 80
            + IG F+  HLGH  ++++A++ A +  + ++  +  P              P S+ E+
Sbjct: 2   GIIIGRFEPFHLGHLKLIKEALEEALDE-VIIIIVSNPP-------KKKRNKDPFSLHER 53

Query: 81  ILE-KMGFSALIR---YKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGD 136
           +   K      ++     F       +    ++ +L   +    V+ G  F FGK+    
Sbjct: 54  VEMLKEILKDRLKVVPVDFPEVKILLAVVFILKILLK--VGPDKVVVGEDFAFGKNA--- 108

Query: 137 RGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTA 173
                K  ++       ++  R    + +SS+ IR  
Sbjct: 109 --SYNKDLKELFLDIEIVEVPRVRDGKKISSTLIREL 143


>gnl|CDD|144891 pfam01467, CTP_transf_2, Cytidylyltransferase.  This family
          includes: Cholinephosphate cytidylyltransferase.
          Glycerol-3-phosphate cytidylyltransferase.
          Length = 148

 Score = 35.5 bits (82), Expect = 0.022
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVL 53
          +  G FD IHLGH  +LEQA ++ +   I  +
Sbjct: 1  LFGGTFDPIHLGHLRLLEQAKELFDLDKIVGV 32


>gnl|CDD|185680 cd02165, NMNAT, Nicotinamide/nicotinate mononucleotide
          adenylyltransferase.  Nicotinamide/nicotinate
          mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). 
          NMNAT represents the primary bacterial and eukaryotic
          adenylyltransferases for nicotinamide-nucleotide and
          for the deamido form, nicotinate nucleotide.  It is an
          indispensable enzyme in the biosynthesis of NAD(+) and
          NADP(+). Nicotinamide-nucleotide adenylyltransferase
          synthesizes NAD via the salvage pathway, while
          nicotinate-nucleotide adenylyltransferase synthesizes
          the immediate precursor of NAD via the de novo pathway.
          Human NMNAT displays unique dual substrate specificity
          toward both NMN and NaMN, and can participate in both
          de novo and salvage pathways of NAD synthesis.
          Length = 192

 Score = 32.6 bits (75), Expect = 0.14
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 25 GNFDGIHLGHHLILEQAIKIANNSP-ITVLSFNP 57
          G+FD  HLGH  I E+A++       + + S NP
Sbjct: 6  GSFDPPHLGHLAIAEEALEELGLDRVLLLPSANP 39


>gnl|CDD|173915 cd02164, PPAT_CoAS, phosphopantetheine adenylyltransferase domain
          of eukaryotic and archaeal bifunctional enzymes.  The
          PPAT domain of the bifunctional enzyme with PPAT and
          DPCK functions. The final two steps of the CoA
          biosynthesis pathway are catalyzed by
          phosphopantetheine adenylyltransferase (PPAT) and
          dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction
          involves the reversible adenylation of
          4'-phosphopantetheine to form 3'-dPCoA and PPi, and
          DPCK catalyses phosphorylation of the 3'-hydroxy group
          of the ribose moiety of dPCoA.  In eukaryotes the two
          enzymes are part of a large multienzyme complex .
          Studies in Corynebacterium ammoniagenes suggested that
          separate enzymes were present, and this was confirmed
          through identification of the bacterial PPAT/CoAD.
          Length = 143

 Score = 30.7 bits (70), Expect = 0.57
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANN 47
          V   G FD +H GH ++L  A  +A  
Sbjct: 2  VAVGGTFDRLHDGHKILLSVAFLLAGE 28


>gnl|CDD|31729 COG1540, COG1540, Uncharacterized proteins, homologs of lactam
           utilization protein B [General function prediction
           only].
          Length = 252

 Score = 30.2 bits (68), Expect = 0.84
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 15/91 (16%)

Query: 144 GEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIHGEKIG 203
           GE +G   +  DE       +VSS+NI          +A   L  R T+     +G  IG
Sbjct: 11  GEGFGAWRMGDDE---ALLPLVSSANIACGF------HAGDPLTMRRTVRLAKENGVAIG 61

Query: 204 RTLGFPT------ANMQLSPDILLKEGVYAI 228
              G+P         M LSP+ L  + +Y I
Sbjct: 62  AHPGYPDLVGFGRREMALSPEELYAQVLYQI 92


>gnl|CDD|31222 COG1019, COG1019, Predicted nucleotidyltransferase [General
          function prediction only].
          Length = 158

 Score = 29.8 bits (67), Expect = 1.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLS 54
          V   G FD +H GH  +LE A +I +   I + S
Sbjct: 8  VAVGGTFDRLHDGHKKLLEVAFEIGDRVTIGLTS 41


>gnl|CDD|31257 COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase
          [Coenzyme metabolism].
          Length = 197

 Score = 29.5 bits (66), Expect = 1.1
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVL--SFNPHPRTIIQSSS 67
          G+FD  H GH LI E+A+       +  L     PH +    +S+
Sbjct: 10 GSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKKKKELASA 54


>gnl|CDD|37597 KOG2386, KOG2386, KOG2386, mRNA capping enzyme, guanylyltransferase
           (alpha) subunit [RNA processing and modification].
          Length = 393

 Score = 29.5 bits (66), Expect = 1.4
 Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 2/71 (2%)

Query: 251 VPNGPLLLESFIFD--FSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKI 308
             +G       I         Y     +  F   RP    K      +Y    +    K+
Sbjct: 131 CTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPGIEKQDYIDALYSRYHDIFPFKV 190

Query: 309 LESSYPLSERD 319
              S P  +R 
Sbjct: 191 SCPSMPDWKRS 201


>gnl|CDD|173921 cd02170, cytidylyltransferase, cytidylyltransferase.  The
          cytidylyltransferase family includes cholinephosphate
          cytidylyltransferase (CCT), glycerol-3-phosphate
          cytidylyltransferase, RafE and  phosphoethanolamine
          cytidylyltransferase (ECT). All enzymes catalyze the
          transfer of a cytidylyl group from CTP to various
          substrates.
          Length = 136

 Score = 28.8 bits (65), Expect = 2.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLS 54
          V A G FD IH GH   LE+A K+ +   + V  
Sbjct: 4  VYAAGTFDIIHPGHIRFLEEAKKLGDYLIVGVAR 37


>gnl|CDD|30960 COG0615, TagD, Cytidylyltransferase [Cell envelope biogenesis,
          outer membrane / Lipid metabolism].
          Length = 140

 Score = 28.7 bits (64), Expect = 2.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 21 VVAIGNFDGIHLGHHLILEQAIKIAN 46
          V A G FD +H GH   L QA K+ +
Sbjct: 4  VWADGTFDILHPGHIEFLRQAKKLGD 29


>gnl|CDD|173941 cd08182, HEPD, Hydroxyethylphosphoate dehydrogenase (HEPD)
           catalyzes the reduction of phosphonoacetaldehyde (PnAA)
           to hydroxyethylphosphoate (HEP).  Hydroxyethylphosphoate
           dehydrogenase (HEPD) catalyzes the reduction of
           phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate
           (HEP) with either NADH or NADPH as a cofactor. NADH is
           the preferred cofactor. PnAA is a biosynthetic
           intermediate for several phosphonates such as the
           antibiotic fosfomycin, phosphinothricin tripeptide
           (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is
           named PhpC in PTT biosynthesis pathway in Streptomyces
           hygroscopicus and S. viridochromogenes. Members of this
           family are only found in bacteria.
          Length = 367

 Score = 28.4 bits (64), Expect = 2.8
 Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 8/41 (19%)

Query: 168 SNIRTALTKGHVLNAAHLLGYRFTIESDVIHGEKIGRTLGF 208
           SN RT         AAH + Y  T    V HG     TL  
Sbjct: 248 SNTRTT--------AAHAISYPLTSRYGVPHGLACALTLPA 280


>gnl|CDD|37702 KOG2491, KOG2491, KOG2491, Nuclear matrix protein [Nuclear
           structure].
          Length = 674

 Score = 28.1 bits (62), Expect = 3.1
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 279 FDYLRPEIKFKDI-----EKLKIYMGEDEKKARKILESSYPLSER 318
           F YL+ + KFK       ++  +++ E EK+  K+LE + P  +R
Sbjct: 331 FQYLKAQSKFKSSKYVLSDEQALWLKECEKRVYKLLEETPPDGKR 375


>gnl|CDD|30392 COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and
           related decarboxylases [Coenzyme metabolism].
          Length = 477

 Score = 28.3 bits (63), Expect = 3.2
 Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 2   HVFHN---IEINQSLPNHLKGGVVAIGNFDGIHLGHHLIL-EQAIKIANNSPIT---VLS 54
             FH    + I +  P H K  ++A      +     +I+ +  I + + + +       
Sbjct: 346 GCFHLLAVVSIKKRYPGHAKRVMLAAWGAGQLSYTKFVIVVDDDIDVRDWNEVIWAIATR 405

Query: 55  FNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIR 92
           F+P    +I  ++P  +L P S +  +  K+G  A  +
Sbjct: 406 FDPDRDLVIIPNTPGDSLDPASPKSGLGSKLGIDATKK 443


>gnl|CDD|37514 KOG2303, KOG2303, KOG2303, Predicted NAD synthase, contains CN
           hydrolase domain [Coenzyme transport and metabolism,
           General function prediction only].
          Length = 706

 Score = 28.0 bits (62), Expect = 3.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 72  LSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQF 107
           LSP  + EK+     + ++ R+K T+ T +Y AE +
Sbjct: 627 LSPRQVAEKVKRFFSYYSINRHKMTVLTPSYHAENY 662


>gnl|CDD|31013 COG0669, CoaD, Phosphopantetheine adenylyltransferase [Coenzyme
          metabolism].
          Length = 159

 Score = 27.4 bits (61), Expect = 5.7
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%)

Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTL 72
          G+FD I  GH  I+++A  + +   + V   NP  +       P+F+L
Sbjct: 9  GSFDPITNGHLDIIKRASALFDEVIVAVA-INPSKK-------PLFSL 48


>gnl|CDD|146404 pfam03746, LamB_YcsF, LamB/YcsF family.  This family includes LamB.
           The lam locus of Aspergillus nidulans consists of two
           divergently transcribed genes, lamA and lamB, involved
           in the utilisation of lactams such as 2-pyrrolidinone.
           Both genes are under the control of the positive
           regulatory gene amdR and are subject to carbon and
           nitrogen metabolite repression. The exact molecular
           function of the proteins in this family is unknown.
          Length = 242

 Score = 27.3 bits (61), Expect = 5.8
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 19/93 (20%)

Query: 144 GEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG--HVLNAAHLLGYRFTIESDVIHGEK 201
           GE +G  T+  DE       +V+S+NI      G   V+          T+     HG +
Sbjct: 9   GESFGAWTMGDDE---ALLPLVTSANIACGFHAGDPSVMRR--------TVRLAAEHGVR 57

Query: 202 IGRTLGFPT------ANMQLSPDILLKEGVYAI 228
           IG   G+P         M LS + L    +Y I
Sbjct: 58  IGAHPGYPDLVGFGRRAMALSAEELYALVLYQI 90


>gnl|CDD|147039 pfam04683, Proteasom_Rpn13, Proteasome complex subunit Rpn13
           ubiquitin receptor.  This family was thought originally
           to be involved in cell-adhesion, but the members are now
           known to be proteasome subunit Rpn13, a novel ubiquitin
           receptor. The 26S proteasome is a huge macromolecular
           protein-degradation machine consisting of a
           proteolytically active 20S core, in the form of four
           disc-like proteins, and one or two 19S regulatory
           particles. The regulatory particle(s) sit on the top and
           or bottom of the core, de-ubiquitinate the substrate
           peptides, unfold them and guide them into the narrow
           channel through the centre of the core. Rpn13 and its
           homologues dock onto the regulatory particle through the
           N-terminal region which binds Rpn2. The C-terminal part
           of the domain binds de-ubiquitinating enzyme Uch37/UCHL5
           and enhances its isopeptidase activity. Rpn13 binds
           ubiquitin via a conserved amino-terminal region called
           the pleckstrin-like receptor for ubiquitin, termed Pru,
           domain. The domain forms two contiguous anti-parallel
           beta-sheets with a configuration similar to the
           pleckstrin-homology domain (PHD) fold. Rpn13's ability
           to bind ubiquitin and the proteasome subunit Rpn2/S1
           simultaneously supports evidence of its role as a
           ubiquitin receptor. Finally, when complexed to
           di-ubiquitin, via the Pru, and Uch37 via the C-terminal
           part, it frees up the distal ubiquitin for
           de-ubiquitination by the Uch37.
          Length = 263

 Score = 27.3 bits (61), Expect = 6.1
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 20/97 (20%)

Query: 229 RFRTQDQTSYSGVANFGRNPTMVPNGPLLLESFIFDFSQEIY---------GQRCTVSFF 279
           +  +  Q S +  A     P      P+ L     D  Q I           Q  TV   
Sbjct: 134 QSGSLAQPSITSAAEGSSTPAS-AANPIQLS----DALQNILANLSADGAGRQGPTVDLA 188

Query: 280 DYLRPEIK---FKD---IEKLKIYMGEDEKKARKILE 310
           + L PE+     +D    E+L  ++ E  + A  +LE
Sbjct: 189 EILTPELLAPLLRDEEVQERLMEHLPEGHQNAEDLLE 225


>gnl|CDD|173927 cd07766, DHQ_Fe-ADH, Dehydroquinate synthase-like (DHQ-like) and
           iron-containing alcohol dehydrogenases (Fe-ADH).
           Dehydroquinate synthase-like. This superfamily divides
           into two subgroups: the dehydroquinate synthase-like,
           and a large metal-containing  alcohol dehydrogenases
           (ADH), known as iron-containing alcohol dehydrogenases.
           Dehydroquinate synthase (DHQS) catalyzes the conversion
           of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to
           dehydroquinate (DHQ) in the second step of the shikimate
           pathway. This pathway involves seven sequential
           enzymatic steps in the conversion of erythrose
           4-phosphate and phosphoenolpyruvate into chorismate for
           subsequent synthesis of aromatic compounds.
           Dehydroquinate synthase-like group includes
           dehydroquinate synthase, 2-deoxy-scyllo-inosose
           synthase, and 2-epi-5-epi-valiolone synthase. The
           alcohol dehydrogenases in this superfamily contain a
           dehydroquinate synthase-like protein structural fold and
           mostly contain iron. They are distinct from other
           alcohol dehydrogenases which contains different protein
           domains. There are several distinct families of alcohol
           dehydrogenases: Zinc-containing long-chain alcohol
           dehydrogenases; insect-type, or short-chain alcohol
           dehydrogenases; iron-containing alcohol dehydrogenases,
           and others. The iron-containing family has a Rossmann
           fold-like topology that resembles the fold of the
           zinc-dependent alcohol dehydrogenases, but lacks
           sequence homology, and differs in strand arrangement.
           ADH catalyzes the reversible oxidation of alcohol to
           acetaldehyde with the simultaneous reduction of NAD(P)+
           to NAD(P)H.
          Length = 332

 Score = 27.4 bits (61), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 180 LNAAHLLGYRFTIESDVIHGEKIG 203
           L AAH +G+  T    + HGE + 
Sbjct: 233 LGAAHAIGHALTALEGIPHGEAVA 256


>gnl|CDD|37142 KOG1931, KOG1931, KOG1931, Putative transmembrane protein [General
           function prediction only].
          Length = 1156

 Score = 26.5 bits (58), Expect = 9.4
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 259 ESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILESSYPLSER 318
              +F+F   ++ ++  +        E+  +  E L  ++     +   +LESS PL   
Sbjct: 292 YFTLFEFRLYLFERQTLLLLKLNRPFEVASRAYELLFSFL-----QELSLLESSVPLGAL 346

Query: 319 D 319
            
Sbjct: 347 K 347


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0695    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,970,324
Number of extensions: 212126
Number of successful extensions: 520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 28
Length of query: 324
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,232,491
Effective search space: 973472930
Effective search space used: 973472930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.8 bits)