RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62] (324 letters) >2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-binding, multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes} Length = 338 Score = 240 bits (614), Expect = 2e-64 Identities = 86/329 (26%), Positives = 155/329 (47%), Gaps = 21/329 (6%) Query: 1 MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPH 58 M +++ ++P L V IG FDG+H GH ++ ++ A + +++F+PH Sbjct: 1 MDIWYGTA---AVPKDLDNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPH 57 Query: 59 PRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEV 118 P ++ ++ + + + E G ++ FT E + S E++++ +L + L Sbjct: 58 PVSVFLPRRAPLGITTLAERFALAESFGIDGVLVIDFTRELSGTSPEKYVEFLLEDTLHA 117 Query: 119 KTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGH 178 V+ G F FG++ AG L++ TV + +L +++ +SS+ +R L++G Sbjct: 118 SHVVVGANFTFGENAAGTADSLRQIC--QSRLTVDVIDLLDDEGVRISSTTVREFLSEGD 175 Query: 179 VLNAAHLLGYRFTIESDVIHGE-KIGRTLGFPTANMQLSPDILL-KEGVYAIRF------ 230 V A LG F + V+ G + G+ LGFPTAN + L +GVYA Sbjct: 176 VARANWALGRHFYVTGPVVRGAGRGGKELGFPTANQYFHDTVALPADGVYAGWLTILPTE 235 Query: 231 -----RTQDQTSYSGVANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPE 285 + + +Y+ + G NPT + +ESF+ D ++YG V F D++R Sbjct: 236 APVSGNMEPEVAYAAAISVGTNPT-FGDEQRSVESFVLDRDADLYGHDVKVEFVDHVRAM 294 Query: 286 IKFKDIEKLKIYMGEDEKKARKILESSYP 314 KF +E+L M +D +K R +L Sbjct: 295 EKFDSVEQLLEVMAKDVQKTRTLLAQDVQ 323 >3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae} Length = 308 Score = 229 bits (584), Expect = 8e-61 Identities = 86/295 (29%), Positives = 143/295 (48%), Gaps = 13/295 (4%) Query: 18 KGGVVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPHPRTIIQSSSP--IFTLS 73 VV +G FDGIH GH + A K A + PI V++FN P+ ++ P + Sbjct: 20 SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHIL 79 Query: 74 PPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDR 133 P+ +E+ L++ G L F+ + A+ +A++F ++ + K ++ G + FG D+ Sbjct: 80 NPAERERKLKREGVEELYLLDFSSQFASLTAQEF-FATYIKAMNAKIIVAGFDYTFGSDK 138 Query: 134 AGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIE 193 + + + + + + K +I SS+ IR A+ G+V A LLG Sbjct: 139 KTAEDL----KNYFDGEVIIVPPVEDEKGKI-SSTRIRQAILDGNVKEAGKLLGAPLPSR 193 Query: 194 SDVIHGEKIGRTLGFPTANMQLSPDILL-KEGVYAIRFRTQDQTSYSGVANFGRNPTMVP 252 V+HG GRT+G+PTAN+ L + +GVY + Q Q +A+ G+N T Sbjct: 194 GMVVHGNARGRTIGYPTANLVLLDRTYMPADGVYVVDVEIQRQKYR-AMASVGKNVT-FD 251 Query: 253 NGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARK 307 E IFDF+Q+IYG+ V + D +R KF +++L + DE+ R Sbjct: 252 GEEARFEVNIFDFNQDIYGETVMVYWLDRIRDMTKFDSVDQLVDQLKADEEVTRN 306 >1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel, nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A Length = 293 Score = 202 bits (515), Expect = 7e-53 Identities = 89/295 (30%), Positives = 142/295 (48%), Gaps = 17/295 (5%) Query: 21 VVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQ 78 VV+IG FDG+H+GH +L +IA + + + P + + L + Sbjct: 2 VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGL--LMTVESR 59 Query: 79 EKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRG 138 ++L + + ++ + + + E F+++ L V V+ G FRFGK+ +G+ Sbjct: 60 VEMLSRYARTVVLDFFRI---KDLTPEGFVERYLSG---VSAVVVGRDFRFGKNASGNAS 113 Query: 139 ILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIH 198 L+K+G V+ E + + VSSS IR + +G V LG F IE V Sbjct: 114 FLRKKG-----VEVYEIEDVVVQGKRVSSSLIRNLVQEGRVEEIPAYLGRYFEIEGIVHK 168 Query: 199 GEKIGRTLGFPTANMQLSPDILL--KEGVYAIRFRTQDQTSYSGVANFGRNPTMVPNGPL 256 + GR LGFPTAN+ + L+ K GVY +R D GV N G PT+ + Sbjct: 169 DREFGRKLGFPTANIDRGNEKLVDLKRGVYLVRVHLPDGKKKFGVMNVGFRPTVGDARNV 228 Query: 257 LLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILES 311 E +I DF ++YGQR + ++R E KF IE+LK + +D K AR +++ Sbjct: 229 KYEVYILDFEGDLYGQRLKLEVLKFMRDEKKFDSIEELKAAIDQDVKSARNMIDD 283 >1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP; 1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A* 1q9s_A* Length = 147 Score = 122 bits (308), Expect = 9e-29 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 5/126 (3%) Query: 190 FTIESDVIHGEKIG-RTLGFPTANMQLSPD----ILLKEGVYAIRFRTQDQTSYSGVANF 244 + V+ G G + LG PTAN + G+Y + V + Sbjct: 5 YFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVSI 64 Query: 245 GRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKK 304 G NP + + F ++ YG+ V+ YLRPE F +E L + D ++ Sbjct: 65 GWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEE 124 Query: 305 ARKILE 310 A+K LE Sbjct: 125 AKKRLE 130 >1n08_A Putative riboflavin kinase; phophoryl transferases, flavin cofactors, metal binding; HET: ADP; 1.60A {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A* 1n07_A* 1n06_A* Length = 163 Score = 112 bits (281), Expect = 1e-25 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 6/128 (4%) Query: 188 YRFTIESDVIHGEKIG-RTLGFPTANMQLSPD----ILLKEGVYAIRFRTQDQTSYSGVA 242 Y E V+HG G + LG PTAN+ GVY + + V Sbjct: 22 YPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMV-QKRVFPMVM 80 Query: 243 NFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDE 302 + G NP I ++ Y + V Y+RPE+ + ++KL + D Sbjct: 81 SVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGLDKLIEDIHTDI 140 Query: 303 KKARKILE 310 + A ++ Sbjct: 141 RVALNSMD 148 >3bnw_A Riboflavin kinase, putative; APO structure, structural genomics, structural genomics of pathogenic protozoa consortium, SGPP, transferase; 2.40A {Trypanosoma brucei} Length = 181 Score = 111 bits (278), Expect = 3e-25 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 14/135 (10%) Query: 190 FTIESDVIHGEK-IGRTLGFPTANMQLSPDIL-----LKEGVYAIRFRTQDQ-------- 235 F + V+HG+ G LGFPTAN+ L D++ K V Sbjct: 18 FFLRGKVVHGKGRGGSQLGFPTANIGLDKDVMECLQPYKNLVVYGWGTVSQVPGKERESF 77 Query: 236 TSYSGVANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLK 295 Y A+ G N + F+ +F + YG + +R F ++ L Sbjct: 78 GPYPFAASIGFNMQFDEKTLTVEPYFLHEFGWDFYGAVVKIIVLGEIRSMGSFHSLQALV 137 Query: 296 IYMGEDEKKARKILE 310 + D + R +L+ Sbjct: 138 DTIKSDVQFTRDMLQ 152 >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 Length = 365 Score = 88.2 bits (218), Expect = 2e-18 Identities = 18/159 (11%), Positives = 45/159 (28%), Gaps = 10/159 (6%) Query: 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKI 81 V G F +H GH ++ +A + ++ + + S + + + + Sbjct: 6 VIFGKFYPVHTGHINMIYEAFSKVDE-LHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRW 64 Query: 82 LE---KMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRG 138 ++ K + + + + + F + Sbjct: 65 MQQIFKYQKNQIFIHHLVEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQDKAP 124 Query: 139 ILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 + G +D R + VS++ IRT + Sbjct: 125 YEK----YLGLEVSLVDPDRTFFN--VSATKIRTTPFQY 157 >3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus} Length = 148 Score = 55.8 bits (133), Expect = 1e-08 Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 18/162 (11%) Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK 80 V G F+ +H GH +++ AIK+ ++ + R I ++ P +I+ + Sbjct: 3 VALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARA------RIRSVLPFAIRAE 56 Query: 81 ILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGIL 140 +++ ++ N ++ + ++ + + Sbjct: 57 NVKRYVMRKYGFEPEIVKITNPYG-------KTLDVDFEYLVVSPETYEMALKINQ---K 106 Query: 141 QKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTAL--TKGHVL 180 ++ K V +D + + +SS+ I+ G ++ Sbjct: 107 REELGKRKITIVKVDWMMAEDGKPISSTRIKRGEIDRYGGII 148 >1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3 Length = 168 Score = 54.0 bits (129), Expect = 4e-08 Identities = 18/156 (11%), Positives = 45/156 (28%), Gaps = 23/156 (14%) Query: 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKI 81 IG F H GH ++++ + + I + S +P + + Sbjct: 4 FIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTL----ENPFTAGERILMITQS 59 Query: 82 LEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQ 141 L+ + +E + V+++ + + ++ Sbjct: 60 LKDYDLTYYPIPIKDIEFNSIWVS-----------YVESLTPPFDIVYSGNPL-----VR 103 Query: 142 KRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 E+ G+ + + S + IR + G Sbjct: 104 VLFEERGYEVKRPEMFNRKE---YSGTEIRRRMLNG 136 >3glv_A Lipopolysaccharide core biosynthesis protein; structural genomics, PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1} Length = 143 Score = 40.8 bits (94), Expect = 4e-04 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 23/156 (14%) Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK 80 V+A G FD +HLGH L+++ K+ + + V + I ++ Sbjct: 5 VMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNG-----------KIPIFDE 53 Query: 81 ILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGIL 140 S L + + + +V + + + G D+ D L Sbjct: 54 NSRLALISELKVVDRAILGHEGDMMKTVIEVKPDIITL-----------GYDQKFDEAEL 102 Query: 141 QKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTK 176 Q + K G + + + Q+ SSS++R + + Sbjct: 103 QSKINKLGITVKIVRISKYDG-QLNSSSSVRKKIME 137 >1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacterthermautotrophicus} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A* Length = 181 Score = 40.8 bits (95), Expect = 4e-04 Identities = 11/156 (7%), Positives = 43/156 (27%), Gaps = 20/156 (12%) Query: 22 VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKI 81 + +G H GH +++ ++ + I + S + + Sbjct: 7 LLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHS-------IRDPFTAGERVMML 59 Query: 82 LEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQ 141 + + + + ++ + + +K + + + +Q Sbjct: 60 TKALSENGIPASRYYIIPVQDIECNALW-----VGHIKMLTPPFDRVYSGNPL-----VQ 109 Query: 142 KRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 + + G+ ++ S + +R + Sbjct: 110 RLFSEDGYEVTAPPLFYRDR---YSGTEVRRRMLDD 142 >2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltransferase; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesis; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3e27_A* 2qtn_A* 2qtm_A* Length = 189 Score = 40.5 bits (93), Expect = 5e-04 Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 5/158 (3%) Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSP-----IFTLSPPSIQE 79 G FD H GH LI + N + L P ++ + +E Sbjct: 9 GTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEE 68 Query: 80 KILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGI 139 + + +T +T +++ + V K+ + Sbjct: 69 HFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTF 128 Query: 140 LQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 + Y T + VSSS +R + Sbjct: 129 VGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEK 166 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.8 bits (90), Expect = 0.002 Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 30/116 (25%) Query: 179 VLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSY 238 VLN L F E+ + G I L A + D L + I+ Sbjct: 83 VLNL--CLTE-F--ENCYLEGNDI-HAL---AAKLLQENDTTLVKTKELIK------NYI 127 Query: 239 SGVANFGRNPTMVPNGPLLLESFIFDFSQE----IY----GQRCTVSFFDYLRPEI 286 + R S +F E + GQ T +F+ LR ++ Sbjct: 128 TARIMAKRPFDKKS------NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR-DL 176 Score = 37.2 bits (86), Expect = 0.004 Identities = 55/314 (17%), Positives = 93/314 (29%), Gaps = 131/314 (41%) Query: 55 FNPHPRTIIQSSSPIF-TLSP-PSIQEKILEKMGFSALIRYKFTLETA---NY--SAE-- 105 ++ +I+ S+ L EK+ + G + ++ + +Y S Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLN-ILEWLENPSNTPDKDYLLSIPIS 237 Query: 106 -------QFIQ-----KVL-VEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTV 152 Q K+L E+++ + G G H Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA--------TG--------------H-- 273 Query: 153 FIDELRNNKSQ-IVSSSNIRTALT----KGHVLNAAHLL---GYR----F--------TI 192 SQ +V++ I + V A +L G R + + Sbjct: 274 ---------SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324 Query: 193 ESDVIHGEKIGRTLGFPTANMQLSPDI--LLKEGVYAIRFRT-----QDQTSYSGVANFG 245 E + + E G P+ M LS I L +E V +T + + N Sbjct: 325 EDSLENNE------GVPSP-M-LS--ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374 Query: 246 RNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFD-YLRPEIKFKDIEKLKIYMGEDEKK 304 +N +V +GP Q +YG + LR K K G D+ Sbjct: 375 KN--LVVSGP----------PQSLYG-------LNLTLR---------KAKAPSGLDQ-- 404 Query: 305 ARKILESSYPLSER 318 +R P SER Sbjct: 405 SRI------PFSER 412 Score = 34.1 bits (78), Expect = 0.042 Identities = 32/209 (15%), Positives = 49/209 (23%), Gaps = 91/209 (43%) Query: 8 EINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIA-NNS---------PITVLSFNP 57 + N LP + ++I+ N P ++ N Sbjct: 355 KTNSHLP-----------------------AGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391 Query: 58 H------PRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKF---TLETANYSAEQFI 108 P + QS P F+ + L + F L A I Sbjct: 392 TLRKAKAPSGLDQSRIP-FSERKLKFSNRFLP-------VASPFHSHLLV----PASDLI 439 Query: 109 QKVL----VEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQI 164 K L V + A D I + T +LR I Sbjct: 440 NKDLVKNNVSF-----------------NAKDIQIPV-------YDTFDGSDLRVLSGSI 475 Query: 165 VSSSNIRTALTKGHV-------LNAAHLL 186 I + + V A H+L Sbjct: 476 SER--IVDCIIRLPVKWETTTQFKATHIL 502 Score = 28.0 bits (62), Expect = 3.0 Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 45/195 (23%) Query: 42 IKIANNSPITV-LSFNPHPRTIIQS--SSPIF-TLSPPSIQ-EKILEKMGFSALIRYKFT 96 + I N+P+ + + F I+ S+ IF T+ ++ EKI +++ + Y F Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS-TSYTFR 1720 Query: 97 LETANYSAEQFIQKVLV-------EWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGF 149 E SA QF Q L E L+ K +I F G+ L + Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA-TFAGHSLGEYAALASLADVMSI 1779 Query: 150 HT----VFI-----------DEL-RNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIE 193 + VF DEL R+N I A+ G V AA F+ E Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSNYGMI--------AINPGRV--AA-----SFSQE 1824 Query: 194 SDVIHGEKIGRTLGF 208 + E++G+ G+ Sbjct: 1825 ALQYVVERVGKRTGW 1839 >2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A* Length = 189 Score = 38.5 bits (88), Expect = 0.002 Identities = 18/159 (11%), Positives = 39/159 (24%), Gaps = 5/159 (3%) Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEK 84 G F+ IH H ++ + L P + Sbjct: 9 GQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDELG 68 Query: 85 MGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRG 144 G K ++ Y + ++ + + T + K + Sbjct: 69 FGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTF 128 Query: 145 -----EKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGH 178 +K + +SS+ IR +++G Sbjct: 129 VVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGK 167 >1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A* Length = 194 Score = 35.8 bits (81), Expect = 0.012 Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 5/158 (3%) Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSP-----IFTLSPPSIQE 79 G FD H GH L+ + + A I + P + + Sbjct: 14 GTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNP 73 Query: 80 KILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGI 139 ++ +T +T + +++ L + + K+ + Sbjct: 74 SFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQF 133 Query: 140 LQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 + + + T + + VSS+ IR Sbjct: 134 IGVKRPGFHVETPYPLLFADVPEFEVSSTMIRERFKSK 171 >1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* Length = 158 Score = 35.2 bits (80), Expect = 0.019 Identities = 15/153 (9%), Positives = 40/153 (26%), Gaps = 22/153 (14%) Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEK 84 G FD I GH I+ +A ++ ++ + + + + + Sbjct: 8 GTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKPMFTLEERVALAQQATAHLGNVEVV 67 Query: 85 MGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRG 144 + + + ++ + F + A L Sbjct: 68 GFSDLMANFARNQHA---------------TVLIRGLRAVADFEYEMQLAHMNRHLMPEL 112 Query: 145 EKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 E + + + + +SSS ++ Sbjct: 113 E-------SVFLMPSKEWSFISSSLVKEVARHQ 138 >3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3lcj_A* 1tfu_A Length = 177 Score = 35.4 bits (81), Expect = 0.019 Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 23/147 (15%) Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEK 84 G+FD + LGH I E+A + + +L + + + Sbjct: 28 GSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQ 87 Query: 85 MGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRG 144 +G ++ + R G D + + Q Sbjct: 88 VGHGLVVDF---------------------VRSCGMTAIVKGLRTGTDFEYELQMAQMNK 126 Query: 145 EKYGFHTVFIDELRNNKSQIVSSSNIR 171 G T F+ + VSSS + Sbjct: 127 HIAGVDTFFV--ATAPRYSFVSSSLAK 151 >2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two individual domains; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341 Score = 34.4 bits (78), Expect = 0.039 Identities = 12/36 (33%), Positives = 15/36 (41%) Query: 24 IGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHP 59 IG F HLGH L A++ A I + S Sbjct: 13 IGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAA 48 >1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A* Length = 129 Score = 33.3 bits (75), Expect = 0.070 Identities = 10/40 (25%), Positives = 22/40 (55%) Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR 60 V+ G FD +H GH +LE+A ++ + + + + + + Sbjct: 4 VITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQ 43 >2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352 Score = 32.4 bits (73), Expect = 0.14 Identities = 22/163 (13%), Positives = 46/163 (28%), Gaps = 25/163 (15%) Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK 80 V IG F H GH + A++ + I + S P +P S +++ Sbjct: 10 SVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNTPNIK----------NPFSFEQR 59 Query: 81 I------LEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRA 134 L+ G L Y +++ ++ + G + Sbjct: 60 KQMIESDLQVAGIDLDTVVIEPLADYFYQEQKWQDELRKNVYKHAKNNNSIAI-VGHIKD 118 Query: 135 GDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 + + +D +N +++ R G Sbjct: 119 SSS---YYIRSFPEWDYIGVDNYKN-----FNATEFRQKFYNG 153 >2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus} Length = 132 Score = 32.1 bits (72), Expect = 0.15 Identities = 8/40 (20%), Positives = 20/40 (50%) Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR 60 V+ G +D +H GH +L +A ++ + + + + + Sbjct: 4 VITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQI 43 >1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A* Length = 242 Score = 31.4 bits (70), Expect = 0.26 Identities = 22/184 (11%), Positives = 42/184 (22%), Gaps = 35/184 (19%) Query: 25 GNFDGIHLGHHLILEQAIK----------IANNSP-------------ITVLSFNPHPRT 61 G FD +H+GH + + P V Sbjct: 30 GTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQRLAMVERAVAGVER 89 Query: 62 IIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTV 121 + + P + + A F L + L+ + Sbjct: 90 LTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHI 149 Query: 122 ITGTKFRFGKDR--------AGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTA 173 + + + A + + G F+ + VS++ IR Sbjct: 150 VVLQRPDADSEPPESLRDLLAARSVADPQALKGPGGQITFVWQTPLA----VSATQIRAL 205 Query: 174 LTKG 177 L G Sbjct: 206 LGAG 209 >1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3 Length = 169 Score = 31.4 bits (70), Expect = 0.29 Identities = 9/35 (25%), Positives = 17/35 (48%) Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHP 59 G+FD + GH I+++ I + VL+ + Sbjct: 9 GSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNSSKK 43 >3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease, coenzyme A; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei 1710B} PDB: 3ikz_A* Length = 170 Score = 31.5 bits (70), Expect = 0.30 Identities = 8/36 (22%), Positives = 14/36 (38%) Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR 60 G FD + GH ++ +A I + + V Sbjct: 12 GTFDPLTRGHEDLVRRASSIFDTLVVGVADSRAKKP 47 >3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus} Length = 236 Score = 31.2 bits (70), Expect = 0.33 Identities = 13/33 (39%), Positives = 16/33 (48%) Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVL 53 V A G FD H GH L QA + N+ + V Sbjct: 79 VYADGIFDLFHSGHARALMQAKNLFPNTYLIVG 111 >3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A biosynthetic pathway, coenzyme A biosynthesis, cytoplasm, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} Length = 168 Score = 31.1 bits (69), Expect = 0.36 Identities = 8/22 (36%), Positives = 13/22 (59%) Query: 25 GNFDGIHLGHHLILEQAIKIAN 46 G+FD I GH I+E++ + Sbjct: 10 GSFDPITYGHLDIIERSTDRFD 31 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.1 bits (69), Expect = 0.38 Identities = 8/18 (44%), Positives = 11/18 (61%) Query: 302 EKKARKILESSYPLSERD 319 EK+A K L++S L D Sbjct: 18 EKQALKKLQASLKLYADD 35 >1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural genomics, JCSG, protein structure initiative, PSI; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3 Length = 173 Score = 31.0 bits (69), Expect = 0.39 Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHP 59 G+FD I LGH I+++A+ I + + V Sbjct: 19 GSFDPITLGHVDIIKRALSIFDELVVLVTENPRKK 53 >3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCSG, protein structure initiative; 1.91A {Methanocaldococcus jannaschii DSM2661} Length = 357 Score = 30.7 bits (69), Expect = 0.44 Identities = 23/205 (11%), Positives = 52/205 (25%), Gaps = 50/205 (24%) Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHP-----RTIIQSSS-------- 67 V ++ +H GH LE+ + + I+VL + Sbjct: 55 VCDFTEYNPLHKGHKYALEKGKE--HGIFISVLPGPLERSGRGIPYFLNRYIRAEMAIRA 112 Query: 68 ---PIFTLSP---------PSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEW 115 + P K+ +G + + +++ Sbjct: 113 GADIVVEGPPMGIMGSGQYMRCLIKMFYSLGAEIIP---RGYIPEKT------MEKVIDC 163 Query: 116 LEVKTVITGTKFRFGKDRAGDRG--ILQKRGEKYGFHTVFIDELRNNKS----------- 162 + I ++ G+ L + I +L Sbjct: 164 INKGYHIQVKPYKIICIETGEILGEKLNIDNYVIASMSQMIYKLNREGLKFNPKFVFVKR 223 Query: 163 -QIVSSSNIRTALTKGHVLNAAHLL 186 + +S + IR A+ G + ++L Sbjct: 224 LEGISGTKIREAIFSGKFEDIKNML 248 >1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3 Length = 160 Score = 30.2 bits (67), Expect = 0.60 Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 20/157 (12%) Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK 80 VV G+FD + GH ++++A ++ + VL L + Sbjct: 3 VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPSKRG---------QYLFSAEERLA 53 Query: 81 ILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGIL 140 I+ + T + + VK + + + + A L Sbjct: 54 IIREATAHLANVEAATFSGLLVDFVRRVGA----QAIVKGLRAVSDYEYELQMAHLNRQL 109 Query: 141 QKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177 G T+FI L + VSS+ ++ G Sbjct: 110 -----YPGLETLFI--LAATRYSFVSSTMVKEIARYG 139 >1tfu_A Phosphopantetheine adenylyltransferase; transport protein, structural genomics, PSI, protein structure initiative; 1.99A {Mycobacterium tuberculosis} SCOP: c.26.1.3 Length = 157 Score = 30.3 bits (67), Expect = 0.64 Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 1/91 (1%) Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEK 84 G+FD + LGH I E+A + + + NP + I + + L Sbjct: 8 GSFDPVTLGHVDIFERAAAQFDE-VVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRV 66 Query: 85 MGFSALIRYKFTLETANYSAEQFIQKVLVEW 115 L+ + E+ Sbjct: 67 QVGHGLVVDFVRSCGMTAIVKGLRTGTDFEY 97 >1wck_A BCLA protein; collagen-like protein, bacterial surface antigen, jelly- roll topology, structural protein; 1.36A {Bacillus anthracis} Length = 220 Score = 29.5 bits (66), Expect = 0.97 Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 1/39 (2%) Query: 40 QAIKIANNSPITVLSFNPHPRTIIQSSSP-IFTLSPPSI 77 ++ + N P+ + T I F +S Sbjct: 95 ISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGF 133 >1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A* Length = 279 Score = 29.0 bits (64), Expect = 1.5 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%) Query: 13 LPNHLKGGVVAI--GNFDGIHLGHHLILEQAIKIAN 46 + N K VV + G+F+ I H + E A N Sbjct: 1 MENSEKTEVVLLACGSFNPITNMHLRLFELAKDYMN 36 >1nup_A FKSG76; NAD biosynthesis, cytoplasm, mitochondria, pyridine adenylyltransferase, enzyme catalysi; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A* Length = 252 Score = 28.7 bits (63), Expect = 1.7 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%) Query: 21 VVAI--GNFDGIHLGHHLILEQAIKIAN 46 VV + G+F+ I H + E A + Sbjct: 7 VVLLACGSFNPITNMHLRMFEVARDHLH 34 >3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens} Length = 341 Score = 28.8 bits (64), Expect = 1.9 Identities = 9/26 (34%), Positives = 13/26 (50%) Query: 21 VVAIGNFDGIHLGHHLILEQAIKIAN 46 V G +D +H GH L QA + + Sbjct: 10 VWCDGCYDMVHYGHSNQLRQARAMGD 35 Score = 27.2 bits (60), Expect = 5.8 Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 22/155 (14%) Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITV-LSFNPHPRTIIQSSSPIFTLSPPSIQEKILE 83 G FD H+GH LE+ ++A I L F+ + PI L + + Sbjct: 205 GAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNL---HERTLSVL 261 Query: 84 KMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKR 143 + + + + + +V V G D KR Sbjct: 262 ACRYVSEVVIGAPYAV----TAELLSH-----FKVDLVCHGKTEIIPDRDGSDPYQEPKR 312 Query: 144 GEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGH 178 + ID N +++ I + Sbjct: 313 RGIF----RQIDSGSN-----LTTDLIVQRIITNR 338 >2idb_A 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: 1PE; 2.90A {Escherichia coli K12} SCOP: b.45.1.3 d.333.1.1 Length = 505 Score = 27.7 bits (61), Expect = 3.5 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 4/67 (5%) Query: 55 FNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRY----KFTLETANYSAEQFIQK 110 +P T++ ++PI L S + KMG A ++ + + Sbjct: 421 MDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAH 480 Query: 111 VLVEWLE 117 + W E Sbjct: 481 IDAIWDE 487 >3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structural genomics, PSI; 1.65A {Vibrio parahaemolyticus} Length = 177 Score = 27.6 bits (60), Expect = 4.0 Identities = 5/20 (25%), Positives = 8/20 (40%) Query: 25 GNFDGIHLGHHLILEQAIKI 44 F+ LGH ++E Sbjct: 9 SAFNPPSLGHKSVIESLSHF 28 >1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A* Length = 213 Score = 27.3 bits (59), Expect = 4.4 Identities = 24/184 (13%), Positives = 42/184 (22%), Gaps = 33/184 (17%) Query: 25 GNFDGIHLGHHLILEQAIK----------IANNSP-------------ITVLSFNPHPRT 61 G FD +H GH +E N P + Sbjct: 10 GTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELAIADKPL 69 Query: 62 IIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTV 121 + +P + + E + + L+ + Sbjct: 70 FTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHL 129 Query: 122 ITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELR--------NNKSQIVSSSNIRTA 173 I R G + Q+ E + H L+ +S++ IR Sbjct: 130 IVCR--RPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWFNISATIIRER 187 Query: 174 LTKG 177 L G Sbjct: 188 LQNG 191 >1v3y_A Peptide deformylase; protein synthesis, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP: d.167.1.1 Length = 192 Score = 27.0 bits (59), Expect = 6.7 Identities = 8/34 (23%), Positives = 17/34 (50%) Query: 278 FFDYLRPEIKFKDIEKLKIYMGEDEKKARKILES 311 FF+ L + +E + + +K+AR +L+ Sbjct: 155 FFERLPKPKREAFLEANRAELVRFQKEARALLKE 188 >2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68 Score = 26.4 bits (58), Expect = 9.1 Identities = 7/25 (28%), Positives = 12/25 (48%) Query: 272 QRCTVSFFDYLRPEIKFKDIEKLKI 296 + C V F D + + +KDI + Sbjct: 38 EVCLVQFEDDSQFLVLWKDISPAAL 62 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.139 0.404 Gapped Lambda K H 0.267 0.0546 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,835,073 Number of extensions: 133235 Number of successful extensions: 495 Number of sequences better than 10.0: 1 Number of HSP's gapped: 473 Number of HSP's successfully gapped: 48 Length of query: 324 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 231 Effective length of database: 3,438,538 Effective search space: 794302278 Effective search space used: 794302278 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 57 (26.2 bits)