RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780846|ref|YP_003065259.1| bifunctional riboflavin
kinase/FMN adenylyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
         (324 letters)



>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase,
           nucleotide-binding, transferase, ATP-binding,
           multifunctional enzyme; 1.95A {Corynebacterium
           ammoniagenes}
          Length = 338

 Score =  240 bits (614), Expect = 2e-64
 Identities = 86/329 (26%), Positives = 155/329 (47%), Gaps = 21/329 (6%)

Query: 1   MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPH 58
           M +++      ++P  L    V IG FDG+H GH  ++   ++ A    +   +++F+PH
Sbjct: 1   MDIWYGTA---AVPKDLDNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPH 57

Query: 59  PRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEV 118
           P ++         ++  + +  + E  G   ++   FT E +  S E++++ +L + L  
Sbjct: 58  PVSVFLPRRAPLGITTLAERFALAESFGIDGVLVIDFTRELSGTSPEKYVEFLLEDTLHA 117

Query: 119 KTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGH 178
             V+ G  F FG++ AG    L++        TV + +L +++   +SS+ +R  L++G 
Sbjct: 118 SHVVVGANFTFGENAAGTADSLRQIC--QSRLTVDVIDLLDDEGVRISSTTVREFLSEGD 175

Query: 179 VLNAAHLLGYRFTIESDVIHGE-KIGRTLGFPTANMQLSPDILL-KEGVYAIRF------ 230
           V  A   LG  F +   V+ G  + G+ LGFPTAN      + L  +GVYA         
Sbjct: 176 VARANWALGRHFYVTGPVVRGAGRGGKELGFPTANQYFHDTVALPADGVYAGWLTILPTE 235

Query: 231 -----RTQDQTSYSGVANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPE 285
                  + + +Y+   + G NPT   +    +ESF+ D   ++YG    V F D++R  
Sbjct: 236 APVSGNMEPEVAYAAAISVGTNPT-FGDEQRSVESFVLDRDADLYGHDVKVEFVDHVRAM 294

Query: 286 IKFKDIEKLKIYMGEDEKKARKILESSYP 314
            KF  +E+L   M +D +K R +L     
Sbjct: 295 EKFDSVEQLLEVMAKDVQKTRTLLAQDVQ 323


>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein
           structure initiative, MI center for structural genomics,
           MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
          Length = 308

 Score =  229 bits (584), Expect = 8e-61
 Identities = 86/295 (29%), Positives = 143/295 (48%), Gaps = 13/295 (4%)

Query: 18  KGGVVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPHPRTIIQSSSP--IFTLS 73
              VV +G FDGIH GH  +   A K A  +  PI V++FN  P+  ++   P     + 
Sbjct: 20  SDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHIL 79

Query: 74  PPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDR 133
            P+ +E+ L++ G   L    F+ + A+ +A++F     ++ +  K ++ G  + FG D+
Sbjct: 80  NPAERERKLKREGVEELYLLDFSSQFASLTAQEF-FATYIKAMNAKIIVAGFDYTFGSDK 138

Query: 134 AGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIE 193
                +       +    + +  + + K +I SS+ IR A+  G+V  A  LLG      
Sbjct: 139 KTAEDL----KNYFDGEVIIVPPVEDEKGKI-SSTRIRQAILDGNVKEAGKLLGAPLPSR 193

Query: 194 SDVIHGEKIGRTLGFPTANMQLSPDILL-KEGVYAIRFRTQDQTSYSGVANFGRNPTMVP 252
             V+HG   GRT+G+PTAN+ L     +  +GVY +    Q Q     +A+ G+N T   
Sbjct: 194 GMVVHGNARGRTIGYPTANLVLLDRTYMPADGVYVVDVEIQRQKYR-AMASVGKNVT-FD 251

Query: 253 NGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARK 307
                 E  IFDF+Q+IYG+   V + D +R   KF  +++L   +  DE+  R 
Sbjct: 252 GEEARFEVNIFDFNQDIYGETVMVYWLDRIRDMTKFDSVDQLVDQLKADEEVTRN 306


>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin
           binding domain, 6-stranded beta barrel, nucleotide
           binding domain; HET: CIT; 1.90A {Thermotoga maritima}
           SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A*
           1t6z_A* 2i1l_A
          Length = 293

 Score =  202 bits (515), Expect = 7e-53
 Identities = 89/295 (30%), Positives = 142/295 (48%), Gaps = 17/295 (5%)

Query: 21  VVAIGNFDGIHLGHHLILEQAIKIA--NNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQ 78
           VV+IG FDG+H+GH  +L    +IA        + + +  P   +     +  L     +
Sbjct: 2   VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGL--LMTVESR 59

Query: 79  EKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRG 138
            ++L +   + ++ +       + + E F+++ L     V  V+ G  FRFGK+ +G+  
Sbjct: 60  VEMLSRYARTVVLDFFRI---KDLTPEGFVERYLSG---VSAVVVGRDFRFGKNASGNAS 113

Query: 139 ILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESDVIH 198
            L+K+G       V+  E    + + VSSS IR  + +G V      LG  F IE  V  
Sbjct: 114 FLRKKG-----VEVYEIEDVVVQGKRVSSSLIRNLVQEGRVEEIPAYLGRYFEIEGIVHK 168

Query: 199 GEKIGRTLGFPTANMQLSPDILL--KEGVYAIRFRTQDQTSYSGVANFGRNPTMVPNGPL 256
             + GR LGFPTAN+    + L+  K GVY +R    D     GV N G  PT+     +
Sbjct: 169 DREFGRKLGFPTANIDRGNEKLVDLKRGVYLVRVHLPDGKKKFGVMNVGFRPTVGDARNV 228

Query: 257 LLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILES 311
             E +I DF  ++YGQR  +    ++R E KF  IE+LK  + +D K AR +++ 
Sbjct: 229 KYEVYILDFEGDLYGQRLKLEVLKFMRDEKKFDSIEELKAAIDQDVKSARNMIDD 283


>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP;
           1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A*
           1q9s_A*
          Length = 147

 Score =  122 bits (308), Expect = 9e-29
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 5/126 (3%)

Query: 190 FTIESDVIHGEKIG-RTLGFPTANMQLSPD----ILLKEGVYAIRFRTQDQTSYSGVANF 244
           +     V+ G   G + LG PTAN            +  G+Y           +  V + 
Sbjct: 5   YFCRGQVVRGFGRGSKQLGIPTANFPEQVVDNLPADISTGIYYGWASVGSGDVHKMVVSI 64

Query: 245 GRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKK 304
           G NP        +    +  F ++ YG+   V+   YLRPE  F  +E L   +  D ++
Sbjct: 65  GWNPYYKNTKKSMETHIMHTFKEDFYGEILNVAIVGYLRPEKNFDSLESLISAIQGDIEE 124

Query: 305 ARKILE 310
           A+K LE
Sbjct: 125 AKKRLE 130


>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin
           cofactors, metal binding; HET: ADP; 1.60A
           {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A*
           1n07_A* 1n06_A*
          Length = 163

 Score =  112 bits (281), Expect = 1e-25
 Identities = 30/128 (23%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 188 YRFTIESDVIHGEKIG-RTLGFPTANMQLSPD----ILLKEGVYAIRFRTQDQTSYSGVA 242
           Y    E  V+HG   G + LG PTAN+              GVY        +  +  V 
Sbjct: 22  YPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMV-QKRVFPMVM 80

Query: 243 NFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDE 302
           + G NP             I    ++ Y +   V    Y+RPE+ +  ++KL   +  D 
Sbjct: 81  SVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGLDKLIEDIHTDI 140

Query: 303 KKARKILE 310
           + A   ++
Sbjct: 141 RVALNSMD 148


>3bnw_A Riboflavin kinase, putative; APO structure, structural genomics,
           structural genomics of pathogenic protozoa consortium,
           SGPP, transferase; 2.40A {Trypanosoma brucei}
          Length = 181

 Score =  111 bits (278), Expect = 3e-25
 Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 190 FTIESDVIHGEK-IGRTLGFPTANMQLSPDIL-----LKEGVYAIRFRTQDQ-------- 235
           F +   V+HG+   G  LGFPTAN+ L  D++      K  V                  
Sbjct: 18  FFLRGKVVHGKGRGGSQLGFPTANIGLDKDVMECLQPYKNLVVYGWGTVSQVPGKERESF 77

Query: 236 TSYSGVANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLK 295
             Y   A+ G N         +   F+ +F  + YG    +     +R    F  ++ L 
Sbjct: 78  GPYPFAASIGFNMQFDEKTLTVEPYFLHEFGWDFYGAVVKIIVLGEIRSMGSFHSLQALV 137

Query: 296 IYMGEDEKKARKILE 310
             +  D +  R +L+
Sbjct: 138 DTIKSDVQFTRDMLQ 152


>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase,
           ribosylnicotinamide kinase; HET: NAD; 2.90A {Haemophilus
           influenzae} SCOP: c.26.1.3 c.37.1.1
          Length = 365

 Score = 88.2 bits (218), Expect = 2e-18
 Identities = 18/159 (11%), Positives = 45/159 (28%), Gaps = 10/159 (6%)

Query: 22  VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKI 81
           V  G F  +H GH  ++ +A    +     ++  +      +   S +  +     + + 
Sbjct: 6   VIFGKFYPVHTGHINMIYEAFSKVDE-LHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRW 64

Query: 82  LE---KMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRG 138
           ++   K   + +  +    +        +                     F  +      
Sbjct: 65  MQQIFKYQKNQIFIHHLVEDGIPSYPNGWQSWSEAVKTLFHEKHFEPSIVFSSEPQDKAP 124

Query: 139 ILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177
             +      G     +D  R   +  VS++ IRT   + 
Sbjct: 125 YEK----YLGLEVSLVDPDRTFFN--VSATKIRTTPFQY 157


>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown
           function, structural genomics, MCSG, PSI-2, protein
           structure initiative; 1.60A {Archaeoglobus fulgidus}
          Length = 148

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 21/162 (12%), Positives = 57/162 (35%), Gaps = 18/162 (11%)

Query: 21  VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK 80
           V   G F+ +H GH  +++ AIK+        ++ +   R        I ++ P +I+ +
Sbjct: 3   VALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARA------RIRSVLPFAIRAE 56

Query: 81  ILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGIL 140
            +++            ++  N              ++ + ++   +      +       
Sbjct: 57  NVKRYVMRKYGFEPEIVKITNPYG-------KTLDVDFEYLVVSPETYEMALKINQ---K 106

Query: 141 QKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTAL--TKGHVL 180
           ++   K     V +D +     + +SS+ I+       G ++
Sbjct: 107 REELGKRKITIVKVDWMMAEDGKPISSTRIKRGEIDRYGGII 148


>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural
           genomics; HET: ATP; 2.00A {Methanocaldococcus
           jannaschii} SCOP: c.26.1.3
          Length = 168

 Score = 54.0 bits (129), Expect = 4e-08
 Identities = 18/156 (11%), Positives = 45/156 (28%), Gaps = 23/156 (14%)

Query: 22  VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKI 81
             IG F   H GH  ++++  +  +   I + S            +P        +  + 
Sbjct: 4   FIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTL----ENPFTAGERILMITQS 59

Query: 82  LEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQ 141
           L+    +        +E  +                V+++       +  +       ++
Sbjct: 60  LKDYDLTYYPIPIKDIEFNSIWVS-----------YVESLTPPFDIVYSGNPL-----VR 103

Query: 142 KRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177
              E+ G+     +     +    S + IR  +  G
Sbjct: 104 VLFEERGYEVKRPEMFNRKE---YSGTEIRRRMLNG 136


>3glv_A Lipopolysaccharide core biosynthesis protein; structural genomics,
           PSI, MCSG, protein structure initiative; HET: AMP; 1.99A
           {Thermoplasma volcanium GSS1}
          Length = 143

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 28/156 (17%), Positives = 56/156 (35%), Gaps = 23/156 (14%)

Query: 21  VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK 80
           V+A G FD +HLGH   L+++ K+ +   + V   +                    I ++
Sbjct: 5   VMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNNG-----------KIPIFDE 53

Query: 81  ILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGIL 140
                  S L      +        + + +V  + + +           G D+  D   L
Sbjct: 54  NSRLALISELKVVDRAILGHEGDMMKTVIEVKPDIITL-----------GYDQKFDEAEL 102

Query: 141 QKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTK 176
           Q +  K G     +   + +  Q+ SSS++R  + +
Sbjct: 103 QSKINKLGITVKIVRISKYDG-QLNSSSSVRKKIME 137


>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide
           binding fold, structural genomics, PSI; HET: NAD; 1.90A
           {Methanothermobacterthermautotrophicus} SCOP: c.26.1.3
           PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
          Length = 181

 Score = 40.8 bits (95), Expect = 4e-04
 Identities = 11/156 (7%), Positives = 43/156 (27%), Gaps = 20/156 (12%)

Query: 22  VAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKI 81
           + +G     H GH  +++  ++  +   I + S                  +       +
Sbjct: 7   LLVGRMQPFHRGHLQVIKSILEEVDELIICIGSAQLSHS-------IRDPFTAGERVMML 59

Query: 82  LEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQ 141
            + +  + +   ++ +          +         +K +       +  +       +Q
Sbjct: 60  TKALSENGIPASRYYIIPVQDIECNALW-----VGHIKMLTPPFDRVYSGNPL-----VQ 109

Query: 142 KRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177
           +   + G+          ++    S + +R  +   
Sbjct: 110 RLFSEDGYEVTAPPLFYRDR---YSGTEVRRRMLDD 142


>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltransferase; NAD,
           nucleotidyltransferase, pyridine nucleotide
           biosynthesis; HET: NXX; 1.70A {Bacillus anthracis} PDB:
           3dv2_A 3e27_A* 2qtn_A* 2qtm_A*
          Length = 189

 Score = 40.5 bits (93), Expect = 5e-04
 Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 5/158 (3%)

Query: 25  GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSP-----IFTLSPPSIQE 79
           G FD  H GH LI  +     N   +  L     P    ++ +               +E
Sbjct: 9   GTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEE 68

Query: 80  KILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGI 139
                +   +     +T +T     +++        +    V    K+   +        
Sbjct: 69  HFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTF 128

Query: 140 LQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177
           +      Y   T +           VSSS +R    + 
Sbjct: 129 VGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEK 166


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 23/116 (19%), Positives = 35/116 (30%), Gaps = 30/116 (25%)

Query: 179 VLNAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSY 238
           VLN    L   F  E+  + G  I   L    A +    D  L +    I+         
Sbjct: 83  VLNL--CLTE-F--ENCYLEGNDI-HAL---AAKLLQENDTTLVKTKELIK------NYI 127

Query: 239 SGVANFGRNPTMVPNGPLLLESFIFDFSQE----IY----GQRCTVSFFDYLRPEI 286
           +      R             S +F    E    +     GQ  T  +F+ LR ++
Sbjct: 128 TARIMAKRPFDKKS------NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR-DL 176



 Score = 37.2 bits (86), Expect = 0.004
 Identities = 55/314 (17%), Positives = 93/314 (29%), Gaps = 131/314 (41%)

Query: 55  FNPHPRTIIQSSSPIF-TLSP-PSIQEKILEKMGFSALIRYKFTLETA---NY--SAE-- 105
           ++     +I+ S+     L       EK+  + G + ++ +          +Y  S    
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ-GLN-ILEWLENPSNTPDKDYLLSIPIS 237

Query: 106 -------QFIQ-----KVL-VEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTV 152
                  Q        K+L     E+++ + G          G              H  
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA--------TG--------------H-- 273

Query: 153 FIDELRNNKSQ-IVSSSNIRTALT----KGHVLNAAHLL---GYR----F--------TI 192
                    SQ +V++  I    +       V  A  +L   G R    +         +
Sbjct: 274 ---------SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324

Query: 193 ESDVIHGEKIGRTLGFPTANMQLSPDI--LLKEGVYAIRFRT-----QDQTSYSGVANFG 245
           E  + + E      G P+  M LS  I  L +E V     +T       +     + N  
Sbjct: 325 EDSLENNE------GVPSP-M-LS--ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA 374

Query: 246 RNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFD-YLRPEIKFKDIEKLKIYMGEDEKK 304
           +N  +V +GP           Q +YG        +  LR         K K   G D+  
Sbjct: 375 KN--LVVSGP----------PQSLYG-------LNLTLR---------KAKAPSGLDQ-- 404

Query: 305 ARKILESSYPLSER 318
           +R       P SER
Sbjct: 405 SRI------PFSER 412



 Score = 34.1 bits (78), Expect = 0.042
 Identities = 32/209 (15%), Positives = 49/209 (23%), Gaps = 91/209 (43%)

Query: 8   EINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIA-NNS---------PITVLSFNP 57
           + N  LP                         + ++I+  N          P ++   N 
Sbjct: 355 KTNSHLP-----------------------AGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391

Query: 58  H------PRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKF---TLETANYSAEQFI 108
                  P  + QS  P F+        + L        +   F    L      A   I
Sbjct: 392 TLRKAKAPSGLDQSRIP-FSERKLKFSNRFLP-------VASPFHSHLLV----PASDLI 439

Query: 109 QKVL----VEWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQI 164
            K L    V +                  A D  I         + T    +LR     I
Sbjct: 440 NKDLVKNNVSF-----------------NAKDIQIPV-------YDTFDGSDLRVLSGSI 475

Query: 165 VSSSNIRTALTKGHV-------LNAAHLL 186
                I   + +  V         A H+L
Sbjct: 476 SER--IVDCIIRLPVKWETTTQFKATHIL 502



 Score = 28.0 bits (62), Expect = 3.0
 Identities = 46/195 (23%), Positives = 73/195 (37%), Gaps = 45/195 (23%)

Query: 42   IKIANNSPITV-LSFNPHPRTIIQS--SSPIF-TLSPPSIQ-EKILEKMGFSALIRYKFT 96
            + I  N+P+ + + F       I+   S+ IF T+    ++ EKI +++   +   Y F 
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHS-TSYTFR 1720

Query: 97   LETANYSAEQFIQKVLV-------EWLEVKTVITGTKFRFGKDRAGDRGILQKRGEKYGF 149
             E    SA QF Q  L        E L+ K +I      F     G+   L    +    
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA-TFAGHSLGEYAALASLADVMSI 1779

Query: 150  HT----VFI-----------DEL-RNNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIE 193
             +    VF            DEL R+N   I        A+  G V  AA      F+ E
Sbjct: 1780 ESLVEVVFYRGMTMQVAVPRDELGRSNYGMI--------AINPGRV--AA-----SFSQE 1824

Query: 194  SDVIHGEKIGRTLGF 208
            +     E++G+  G+
Sbjct: 1825 ALQYVVERVGKRTGW 1839


>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat,
           nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB:
           2h2a_A*
          Length = 189

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 18/159 (11%), Positives = 39/159 (24%), Gaps = 5/159 (3%)

Query: 25  GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEK 84
           G F+ IH  H ++  +            L     P         +               
Sbjct: 9   GQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDELG 68

Query: 85  MGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRG 144
            G       K   ++  Y   +  ++   +      + T    +  K    +        
Sbjct: 69  FGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTF 128

Query: 145 -----EKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGH 178
                +K   +              +SS+ IR  +++G 
Sbjct: 129 VVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGK 167


>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman
           fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB:
           1kaq_A*
          Length = 194

 Score = 35.8 bits (81), Expect = 0.012
 Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 5/158 (3%)

Query: 25  GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSP-----IFTLSPPSIQE 79
           G FD  H GH L+  + +  A    I  +     P    +  +                 
Sbjct: 14  GTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQNEDYTDSFHRVEMLKLAIQSNP 73

Query: 80  KILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGI 139
               ++         +T +T +   +++    L   +    +    K+    +       
Sbjct: 74  SFKLELVEMEREGPSYTFDTVSLLKQRYPNDQLFFIIGADMIEYLPKWYKLDELLNLIQF 133

Query: 140 LQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177
           +  +   +   T +     +     VSS+ IR      
Sbjct: 134 IGVKRPGFHVETPYPLLFADVPEFEVSSTMIRERFKSK 171


>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis,
           nucleotidyltransferase; HET: PNS; 1.64A {Escherichia
           coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A*
          Length = 158

 Score = 35.2 bits (80), Expect = 0.019
 Identities = 15/153 (9%), Positives = 40/153 (26%), Gaps = 22/153 (14%)

Query: 25  GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEK 84
           G FD I  GH  I+ +A ++ ++  + + +                     +    +   
Sbjct: 8   GTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKPMFTLEERVALAQQATAHLGNVEVV 67

Query: 85  MGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRG 144
                +  +                      + ++ +     F +    A     L    
Sbjct: 68  GFSDLMANFARNQHA---------------TVLIRGLRAVADFEYEMQLAHMNRHLMPEL 112

Query: 145 EKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177
           E        +  + + +   +SSS ++      
Sbjct: 113 E-------SVFLMPSKEWSFISSSLVKEVARHQ 138


>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A
           {Mycobacterium tuberculosis} PDB: 3nba_A* 3lcj_A* 1tfu_A
          Length = 177

 Score = 35.4 bits (81), Expect = 0.019
 Identities = 22/147 (14%), Positives = 40/147 (27%), Gaps = 23/147 (15%)

Query: 25  GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEK 84
           G+FD + LGH  I E+A    +   + +L                      +    +  +
Sbjct: 28  GSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRVQ 87

Query: 85  MGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKRG 144
           +G   ++ +                                  R G D   +  + Q   
Sbjct: 88  VGHGLVVDF---------------------VRSCGMTAIVKGLRTGTDFEYELQMAQMNK 126

Query: 145 EKYGFHTVFIDELRNNKSQIVSSSNIR 171
              G  T F+      +   VSSS  +
Sbjct: 127 HIAGVDTFFV--ATAPRYSFVSSSLAK 151


>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two
          individual domains; HET: APR NAD; 2.60A {Synechocystis
          SP}
          Length = 341

 Score = 34.4 bits (78), Expect = 0.039
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 24 IGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHP 59
          IG F   HLGH   L  A++ A    I + S     
Sbjct: 13 IGRFQPFHLGHLRTLNLALEKAEQVIIILGSHRVAA 48


>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP;
          2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
          Length = 129

 Score = 33.3 bits (75), Expect = 0.070
 Identities = 10/40 (25%), Positives = 22/40 (55%)

Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR 60
          V+  G FD +H GH  +LE+A ++ +   + + +   + +
Sbjct: 4  VITYGTFDLLHWGHIKLLERAKQLGDYLVVAISTDEFNLQ 43


>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
           domains, hydrolase; HET: AMP; 2.30A {Francisella
           tularensis} PDB: 2r5w_B
          Length = 352

 Score = 32.4 bits (73), Expect = 0.14
 Identities = 22/163 (13%), Positives = 46/163 (28%), Gaps = 25/163 (15%)

Query: 21  VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK 80
            V IG F   H GH   +  A++ +    I + S    P             +P S +++
Sbjct: 10  SVFIGRFQPFHKGHLHNIIIALQNSKKVIINIGSCFNTPNIK----------NPFSFEQR 59

Query: 81  I------LEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRA 134
                  L+  G          L    Y  +++  ++     +            G  + 
Sbjct: 60  KQMIESDLQVAGIDLDTVVIEPLADYFYQEQKWQDELRKNVYKHAKNNNSIAI-VGHIKD 118

Query: 135 GDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177
                         +  + +D  +N      +++  R     G
Sbjct: 119 SSS---YYIRSFPEWDYIGVDNYKN-----FNATEFRQKFYNG 153


>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A
          {Staphylococcus aureus}
          Length = 132

 Score = 32.1 bits (72), Expect = 0.15
 Identities = 8/40 (20%), Positives = 20/40 (50%)

Query: 21 VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR 60
          V+  G +D +H GH  +L +A ++ +   + + +   +  
Sbjct: 4  VITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQI 43


>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta
           domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa}
           PDB: 1yul_A* 1yun_A*
          Length = 242

 Score = 31.4 bits (70), Expect = 0.26
 Identities = 22/184 (11%), Positives = 42/184 (22%), Gaps = 35/184 (19%)

Query: 25  GNFDGIHLGHHLILEQAIK----------IANNSP-------------ITVLSFNPHPRT 61
           G FD +H+GH     +  +               P               V         
Sbjct: 30  GTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPHRETPQVSAAQRLAMVERAVAGVER 89

Query: 62  IIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTV 121
           +      +    P    + +       A     F L   +              L+   +
Sbjct: 90  LTVDPRELQRDKPSYTIDTLESVRAELAADDQLFMLIGWDAFCGLPTWHRWEALLDHCHI 149

Query: 122 ITGTKFRFGKDR--------AGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTA 173
           +   +     +         A       +  +  G    F+ +        VS++ IR  
Sbjct: 150 VVLQRPDADSEPPESLRDLLAARSVADPQALKGPGGQITFVWQTPLA----VSATQIRAL 205

Query: 174 LTKG 177
           L  G
Sbjct: 206 LGAG 209


>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET:
          ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
          Length = 169

 Score = 31.4 bits (70), Expect = 0.29
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHP 59
          G+FD +  GH  I+++   I     + VL+ +   
Sbjct: 9  GSFDPVTYGHLDIIKRGAHIFEQVYVCVLNNSSKK 43


>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle
          structural genomics center for infectious disease,
          coenzyme A; HET: 4PS ADE PG4; 1.60A {Burkholderia
          pseudomallei 1710B} PDB: 3ikz_A*
          Length = 170

 Score = 31.5 bits (70), Expect = 0.30
 Identities = 8/36 (22%), Positives = 14/36 (38%)

Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR 60
          G FD +  GH  ++ +A  I +   + V        
Sbjct: 12 GTFDPLTRGHEDLVRRASSIFDTLVVGVADSRAKKP 47


>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold,
           phospholipid synthesis, phosphatidylcholine,
           phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A
           {Rattus norvegicus}
          Length = 236

 Score = 31.2 bits (70), Expect = 0.33
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 21  VVAIGNFDGIHLGHHLILEQAIKIANNSPITVL 53
           V A G FD  H GH   L QA  +  N+ + V 
Sbjct: 79  VYADGIFDLFHSGHARALMQAKNLFPNTYLIVG 111


>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A
          biosynthetic pathway, coenzyme A biosynthesis,
          cytoplasm, nucleotidyltransferase; HET: PPS; 2.40A
          {Staphylococcus aureus}
          Length = 168

 Score = 31.1 bits (69), Expect = 0.36
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 25 GNFDGIHLGHHLILEQAIKIAN 46
          G+FD I  GH  I+E++    +
Sbjct: 10 GSFDPITYGHLDIIERSTDRFD 31


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.1 bits (69), Expect = 0.38
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 302 EKKARKILESSYPLSERD 319
           EK+A K L++S  L   D
Sbjct: 18  EKQALKKLQASLKLYADD 35


>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural
          genomics, JCSG, protein structure initiative, PSI; HET:
          PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
          Length = 173

 Score = 31.0 bits (69), Expect = 0.39
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 25 GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHP 59
          G+FD I LGH  I+++A+ I +   + V       
Sbjct: 19 GSFDPITLGHVDIIKRALSIFDELVVLVTENPRKK 53


>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural
           genomics, PSI, MCSG, protein structure initiative; 1.91A
           {Methanocaldococcus jannaschii DSM2661}
          Length = 357

 Score = 30.7 bits (69), Expect = 0.44
 Identities = 23/205 (11%), Positives = 52/205 (25%), Gaps = 50/205 (24%)

Query: 21  VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHP-----RTIIQSSS-------- 67
           V     ++ +H GH   LE+  +  +   I+VL              +            
Sbjct: 55  VCDFTEYNPLHKGHKYALEKGKE--HGIFISVLPGPLERSGRGIPYFLNRYIRAEMAIRA 112

Query: 68  ---PIFTLSP---------PSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEW 115
               +    P              K+   +G   +                   + +++ 
Sbjct: 113 GADIVVEGPPMGIMGSGQYMRCLIKMFYSLGAEIIP---RGYIPEKT------MEKVIDC 163

Query: 116 LEVKTVITGTKFRFGKDRAGDRG--ILQKRGEKYGFHTVFIDELRNNKS----------- 162
           +     I    ++      G+     L          +  I +L                
Sbjct: 164 INKGYHIQVKPYKIICIETGEILGEKLNIDNYVIASMSQMIYKLNREGLKFNPKFVFVKR 223

Query: 163 -QIVSSSNIRTALTKGHVLNAAHLL 186
            + +S + IR A+  G   +  ++L
Sbjct: 224 LEGISGTKIREAIFSGKFEDIKNML 248


>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A
           biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A
           {Thermus thermophilus} SCOP: c.26.1.3
          Length = 160

 Score = 30.2 bits (67), Expect = 0.60
 Identities = 26/157 (16%), Positives = 49/157 (31%), Gaps = 20/157 (12%)

Query: 21  VVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEK 80
           VV  G+FD +  GH  ++++A ++     + VL                  L     +  
Sbjct: 3   VVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLENPSKRG---------QYLFSAEERLA 53

Query: 81  ILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGIL 140
           I+ +           T         + +         VK +   + + +    A     L
Sbjct: 54  IIREATAHLANVEAATFSGLLVDFVRRVGA----QAIVKGLRAVSDYEYELQMAHLNRQL 109

Query: 141 QKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKG 177
                  G  T+FI  L   +   VSS+ ++     G
Sbjct: 110 -----YPGLETLFI--LAATRYSFVSSTMVKEIARYG 139


>1tfu_A Phosphopantetheine adenylyltransferase; transport protein,
           structural genomics, PSI, protein structure initiative;
           1.99A {Mycobacterium tuberculosis} SCOP: c.26.1.3
          Length = 157

 Score = 30.3 bits (67), Expect = 0.64
 Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 25  GNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEK 84
           G+FD + LGH  I E+A    +   +  +  NP    +      I  +   +     L  
Sbjct: 8   GSFDPVTLGHVDIFERAAAQFDE-VVVAILVNPAKTGMFDLDERIAMVKESTTHLPNLRV 66

Query: 85  MGFSALIRYKFTLETANYSAEQFIQKVLVEW 115
                L+             +        E+
Sbjct: 67  QVGHGLVVDFVRSCGMTAIVKGLRTGTDFEY 97


>1wck_A BCLA protein; collagen-like protein, bacterial surface antigen,
           jelly- roll topology, structural protein; 1.36A
           {Bacillus anthracis}
          Length = 220

 Score = 29.5 bits (66), Expect = 0.97
 Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 1/39 (2%)

Query: 40  QAIKIANNSPITVLSFNPHPRTIIQSSSP-IFTLSPPSI 77
            ++ +  N P+   +      T I       F +S    
Sbjct: 95  ISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGF 133


>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase;
          nucleotidyltransferase superfamily; HET: NAD; 2.20A
          {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A*
          1kku_A 1gzu_A*
          Length = 279

 Score = 29.0 bits (64), Expect = 1.5
 Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 13 LPNHLKGGVVAI--GNFDGIHLGHHLILEQAIKIAN 46
          + N  K  VV +  G+F+ I   H  + E A    N
Sbjct: 1  MENSEKTEVVLLACGSFNPITNMHLRLFELAKDYMN 36


>1nup_A FKSG76; NAD biosynthesis, cytoplasm, mitochondria, pyridine
          adenylyltransferase, enzyme catalysi; HET: NMN; 1.90A
          {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A
          1nus_A* 1nut_A* 1nuu_A*
          Length = 252

 Score = 28.7 bits (63), Expect = 1.7
 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)

Query: 21 VVAI--GNFDGIHLGHHLILEQAIKIAN 46
          VV +  G+F+ I   H  + E A    +
Sbjct: 7  VVLLACGSFNPITNMHLRMFEVARDHLH 34


>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway,
          CMP, CTP, phosphoethanolamine, SGC, structural genomics
          consortium; HET: C5P; 2.00A {Homo sapiens}
          Length = 341

 Score = 28.8 bits (64), Expect = 1.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 21 VVAIGNFDGIHLGHHLILEQAIKIAN 46
          V   G +D +H GH   L QA  + +
Sbjct: 10 VWCDGCYDMVHYGHSNQLRQARAMGD 35



 Score = 27.2 bits (60), Expect = 5.8
 Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 22/155 (14%)

Query: 25  GNFDGIHLGHHLILEQAIKIANNSPITV-LSFNPHPRTIIQSSSPIFTLSPPSIQEKILE 83
           G FD  H+GH   LE+  ++A    I   L F+         + PI  L     +   + 
Sbjct: 205 GAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNL---HERTLSVL 261

Query: 84  KMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKDRAGDRGILQKR 143
              + + +              + +        +V  V  G           D     KR
Sbjct: 262 ACRYVSEVVIGAPYAV----TAELLSH-----FKVDLVCHGKTEIIPDRDGSDPYQEPKR 312

Query: 144 GEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGH 178
              +      ID   N     +++  I   +    
Sbjct: 313 RGIF----RQIDSGSN-----LTTDLIVQRIITNR 338


>2idb_A 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; alpha-beta protein,
           structural genomics, PSI-2, protein structure
           initiative; HET: 1PE; 2.90A {Escherichia coli K12} SCOP:
           b.45.1.3 d.333.1.1
          Length = 505

 Score = 27.7 bits (61), Expect = 3.5
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 55  FNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRY----KFTLETANYSAEQFIQK 110
            +P   T++  ++PI  L   S    +  KMG  A  ++    +             +  
Sbjct: 421 MDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAH 480

Query: 111 VLVEWLE 117
           +   W E
Sbjct: 481 IDAIWDE 487


>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase,
          MCSG, midwest center for structural genomics, PSI;
          1.65A {Vibrio parahaemolyticus}
          Length = 177

 Score = 27.6 bits (60), Expect = 4.0
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 25 GNFDGIHLGHHLILEQAIKI 44
            F+   LGH  ++E     
Sbjct: 9  SAFNPPSLGHKSVIESLSHF 28


>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT;
           1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
          Length = 213

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 24/184 (13%), Positives = 42/184 (22%), Gaps = 33/184 (17%)

Query: 25  GNFDGIHLGHHLILEQAIK----------IANNSP-------------ITVLSFNPHPRT 61
           G FD +H GH   +E                N  P               +         
Sbjct: 10  GTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSVQRKHMLELAIADKPL 69

Query: 62  IIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTV 121
                  +   +P    + + E             +   +              L+   +
Sbjct: 70  FTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHL 129

Query: 122 ITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELR--------NNKSQIVSSSNIRTA 173
           I     R G      +   Q+  E +  H      L+              +S++ IR  
Sbjct: 130 IVCR--RPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWFNISATIIRER 187

Query: 174 LTKG 177
           L  G
Sbjct: 188 LQNG 191


>1v3y_A Peptide deformylase; protein synthesis, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
           d.167.1.1
          Length = 192

 Score = 27.0 bits (59), Expect = 6.7
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 278 FFDYLRPEIKFKDIEKLKIYMGEDEKKARKILES 311
           FF+ L    +   +E  +  +   +K+AR +L+ 
Sbjct: 155 FFERLPKPKREAFLEANRAELVRFQKEARALLKE 188


>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein,
           structural genomics, NPPSFA; NMR {Homo sapiens}
          Length = 68

 Score = 26.4 bits (58), Expect = 9.1
 Identities = 7/25 (28%), Positives = 12/25 (48%)

Query: 272 QRCTVSFFDYLRPEIKFKDIEKLKI 296
           + C V F D  +  + +KDI    +
Sbjct: 38  EVCLVQFEDDSQFLVLWKDISPAAL 62


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,835,073
Number of extensions: 133235
Number of successful extensions: 495
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 48
Length of query: 324
Length of database: 5,693,230
Length adjustment: 93
Effective length of query: 231
Effective length of database: 3,438,538
Effective search space: 794302278
Effective search space used: 794302278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.2 bits)