BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780846|ref|YP_003065259.1| bifunctional riboflavin
kinase/FMN adenylyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(324 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 324
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/324 (100%), Positives = 324/324 (100%)
Query: 1 MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR 60
MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR
Sbjct: 1 MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR 60
Query: 61 TIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKT 120
TIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKT
Sbjct: 61 TIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKT 120
Query: 121 VITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVL 180
VITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVL
Sbjct: 121 VITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVL 180
Query: 181 NAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSYSG 240
NAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSYSG
Sbjct: 181 NAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSYSG 240
Query: 241 VANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGE 300
VANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGE
Sbjct: 241 VANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGE 300
Query: 301 DEKKARKILESSYPLSERDRIICF 324
DEKKARKILESSYPLSERDRIICF
Sbjct: 301 DEKKARKILESSYPLSERDRIICF 324
>537021.9.peg.410_1
Length = 952
Score = 26.2 bits (56), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 81 ILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKD-RAGDRGI 139
+L+K SA IRYK E + ++ L++W ++++ F GK+ + R +
Sbjct: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED--FFVGKNTHSSPRTL 216
Query: 140 LQKRGEK---YGFH 150
EK Y FH
Sbjct: 217 FAVGDEKQSIYSFH 230
>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 606
Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%)
Query: 256 LLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILESSYPL 315
L L IFDF + + FDY + + D+ KL I + + A IL
Sbjct: 454 LPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDSDLVKLTILVNNETIDALSILVHRSVS 513
Query: 316 SERDRIIC 323
+R R IC
Sbjct: 514 EKRGRGIC 521
>gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 199
Score = 25.0 bits (53), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 50 ITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILE-KMGFSA---------LIRYKFTLET 99
I + S + R ++Q+S F++ P+I E+ +E KM FS ++ K LE
Sbjct: 5 IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEV 64
Query: 100 ANYSAEQFI 108
+N E F+
Sbjct: 65 SNRYPESFV 73
>gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 652
Score = 25.0 bits (53), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 254 GPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILES 311
GP++ + F +DF +E ++ + EI +D LK Y+ + KAR++ ES
Sbjct: 97 GPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHE--KARELFES 152
>gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
Length = 160
Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 48 SPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYS---A 104
S IT++S + + SSP L+ S+QE+ +G S +T++YS A
Sbjct: 11 SAITMMSISGIDNLDTKISSPDTVLNESSLQEQFSSSVGDSVF------FDTSSYSIRPA 64
Query: 105 EQFIQKVLVEWLE 117
+ + L WLE
Sbjct: 65 DIQVLSNLGSWLE 77
>gi|254781121|ref|YP_003065534.1| hypothetical protein CLIBASIA_05115 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 185
Score = 23.5 bits (49), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 116 LEVK-TVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTAL 174
LEVK +GT F+ +R +KR + TV I+E++ K +VS+ + R
Sbjct: 111 LEVKGKNASGTIFKMKS--YNNRAAFEKRSQ----DTVLIEEMKRGKELVVSAKSKRGTN 164
Query: 175 TK 176
T+
Sbjct: 165 TR 166
>gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
str. psy62]
Length = 385
Score = 23.5 bits (49), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 8/37 (21%), Positives = 22/37 (59%)
Query: 159 NNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESD 195
N+K V+ +N+R A+ + ++++ + + ++ SD
Sbjct: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
>gi|254780402|ref|YP_003064815.1| 3-deoxy-D-manno-octulosonic-acid transferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 440
Score = 23.5 bits (49), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 198 HGEKIGRTLGFPTANMQLSPDI 219
G K G LG+PTA + P I
Sbjct: 38 RGRKFGERLGYPTALRPIGPLI 59
>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1398
Score = 23.1 bits (48), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 225 VYAIRFRTQDQTSYSGVANFGRNPTMVPNGPLLLESFI 262
VY++ R +T+ + N N +V G L+LES +
Sbjct: 829 VYSLGSRVLGRTALDDIINPLTNECIVKAGQLILESHV 866
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.322 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 211,892
Number of Sequences: 1233
Number of extensions: 8989
Number of successful extensions: 26
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 11
length of query: 324
length of database: 328,796
effective HSP length: 74
effective length of query: 250
effective length of database: 237,554
effective search space: 59388500
effective search space used: 59388500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 38 (19.2 bits)