BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62] (324 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780846|ref|YP_003065259.1| bifunctional riboflavin kinase/FMN adenylyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 324 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/324 (100%), Positives = 324/324 (100%) Query: 1 MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR 60 MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR Sbjct: 1 MHVFHNIEINQSLPNHLKGGVVAIGNFDGIHLGHHLILEQAIKIANNSPITVLSFNPHPR 60 Query: 61 TIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKT 120 TIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKT Sbjct: 61 TIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKT 120 Query: 121 VITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVL 180 VITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVL Sbjct: 121 VITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTALTKGHVL 180 Query: 181 NAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSYSG 240 NAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSYSG Sbjct: 181 NAAHLLGYRFTIESDVIHGEKIGRTLGFPTANMQLSPDILLKEGVYAIRFRTQDQTSYSG 240 Query: 241 VANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGE 300 VANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGE Sbjct: 241 VANFGRNPTMVPNGPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGE 300 Query: 301 DEKKARKILESSYPLSERDRIICF 324 DEKKARKILESSYPLSERDRIICF Sbjct: 301 DEKKARKILESSYPLSERDRIICF 324 >537021.9.peg.410_1 Length = 952 Score = 26.2 bits (56), Expect = 0.89, Method: Compositional matrix adjust. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%) Query: 81 ILEKMGFSALIRYKFTLETANYSAEQFIQKVLVEWLEVKTVITGTKFRFGKD-RAGDRGI 139 +L+K SA IRYK E + ++ L++W ++++ F GK+ + R + Sbjct: 159 LLKKRDVSAWIRYKIDQEINHILIDEVQDTSLIQWEVIRSLTED--FFVGKNTHSSPRTL 216 Query: 140 LQKRGEK---YGFH 150 EK Y FH Sbjct: 217 FAVGDEKQSIYSFH 230 >gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str. psy62] Length = 606 Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 28/68 (41%) Query: 256 LLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILESSYPL 315 L L IFDF + + FDY + + D+ KL I + + A IL Sbjct: 454 LPLNEVIFDFYDRLKSVSKGYASFDYNVIDYRDSDLVKLTILVNNETIDALSILVHRSVS 513 Query: 316 SERDRIIC 323 +R R IC Sbjct: 514 EKRGRGIC 521 >gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 25.0 bits (53), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 10/69 (14%) Query: 50 ITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILE-KMGFSA---------LIRYKFTLET 99 I + S + R ++Q+S F++ P+I E+ +E KM FS ++ K LE Sbjct: 5 IILASSSLSRRKLLQNSGIQFSVVKPNIDEREMEKKMDFSERKRPEKIALILAEKKALEV 64 Query: 100 ANYSAEQFI 108 +N E F+ Sbjct: 65 SNRYPESFV 73 >gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 25.0 bits (53), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Query: 254 GPLLLESFIFDFSQEIYGQRCTVSFFDYLRPEIKFKDIEKLKIYMGEDEKKARKILES 311 GP++ + F +DF +E ++ + EI +D LK Y+ + KAR++ ES Sbjct: 97 GPIIEDGFYYDFDKEQPFSSDELAQIEKKMQEIIARDSPFLKQYLSHE--KARELFES 152 >gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62] Length = 160 Score = 24.6 bits (52), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%) Query: 48 SPITVLSFNPHPRTIIQSSSPIFTLSPPSIQEKILEKMGFSALIRYKFTLETANYS---A 104 S IT++S + + SSP L+ S+QE+ +G S +T++YS A Sbjct: 11 SAITMMSISGIDNLDTKISSPDTVLNESSLQEQFSSSVGDSVF------FDTSSYSIRPA 64 Query: 105 EQFIQKVLVEWLE 117 + + L WLE Sbjct: 65 DIQVLSNLGSWLE 77 >gi|254781121|ref|YP_003065534.1| hypothetical protein CLIBASIA_05115 [Candidatus Liberibacter asiaticus str. psy62] Length = 185 Score = 23.5 bits (49), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%) Query: 116 LEVK-TVITGTKFRFGKDRAGDRGILQKRGEKYGFHTVFIDELRNNKSQIVSSSNIRTAL 174 LEVK +GT F+ +R +KR + TV I+E++ K +VS+ + R Sbjct: 111 LEVKGKNASGTIFKMKS--YNNRAAFEKRSQ----DTVLIEEMKRGKELVVSAKSKRGTN 164 Query: 175 TK 176 T+ Sbjct: 165 TR 166 >gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 385 Score = 23.5 bits (49), Expect = 5.4, Method: Compositional matrix adjust. Identities = 8/37 (21%), Positives = 22/37 (59%) Query: 159 NNKSQIVSSSNIRTALTKGHVLNAAHLLGYRFTIESD 195 N+K V+ +N+R A+ + ++++ + + ++ SD Sbjct: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 >gi|254780402|ref|YP_003064815.1| 3-deoxy-D-manno-octulosonic-acid transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 23.5 bits (49), Expect = 5.4, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 12/22 (54%) Query: 198 HGEKIGRTLGFPTANMQLSPDI 219 G K G LG+PTA + P I Sbjct: 38 RGRKFGERLGYPTALRPIGPLI 59 >gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter asiaticus str. psy62] Length = 1398 Score = 23.1 bits (48), Expect = 6.2, Method: Compositional matrix adjust. Identities = 12/38 (31%), Positives = 20/38 (52%) Query: 225 VYAIRFRTQDQTSYSGVANFGRNPTMVPNGPLLLESFI 262 VY++ R +T+ + N N +V G L+LES + Sbjct: 829 VYSLGSRVLGRTALDDIINPLTNECIVKAGQLILESHV 866 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.139 0.404 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 211,892 Number of Sequences: 1233 Number of extensions: 8989 Number of successful extensions: 26 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 19 Number of HSP's gapped (non-prelim): 11 length of query: 324 length of database: 328,796 effective HSP length: 74 effective length of query: 250 effective length of database: 237,554 effective search space: 59388500 effective search space used: 59388500 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 38 (19.2 bits)