HHsearch alignment for GI: 254780847 and conserved domain: TIGR01459
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily subfamily IIA hydrolase, TIGR01459; InterPro: IPR006356 These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are restricted to the Gram-negative and primarily alpha proteobacteria. Only one sequence has been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some scepticism..
Probab=100.00 E-value=0 Score=321.19 Aligned_cols=232 Identities=31% Similarity=0.562 Sum_probs=195.2
Q ss_pred HHHHHHCCCEEEEECCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCHHCCCCCCHHHHH
Q ss_conf 79998417999992744323188148627999999998798199985989995899998751277700001356879999
Q gi|254780847|r 8 LRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDIITSGDLT 87 (282)
Q Consensus 8 ~~~i~~~yd~~lfD~DGvL~~g~~~ipgA~e~l~~L~~~g~~~~~lTN~s~~~~~~~~~L~~lG~~~~~~d~I~ts~~~~ 87 (282)
T Consensus 1 i~~l~~dYdvFLlDlwGV~~dG~~~yPGav~~l~~~~a~gk~V~f~sNs~~~~~~~~~~l~~lGi~~~~~~~i~sSGE~A 80 (243)
T TIGR01459 1 IEDLIEDYDVFLLDLWGVVIDGQEAYPGAVEALAKLKAEGKTVYFVSNSSKRVAELEARLKKLGIAADLFEGIVSSGEVA 80 (243)
T ss_pred CHHHHHHHCCEEHCCCCEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 91245562300000023444389895168999999985589189997686013466657876132334510112015899
Q ss_pred HHHHHHHC-------CCCCCCCCC-CHHHHHHCCCCCCCCCCCCCCEEEEEC--CCCCCCCHHHHHHHHHHH-HHCCCCE
Q ss_conf 99998531-------654543872-521243117973157556786899843--771001179999999999-7305740
Q gi|254780847|r 88 HHLLVEES-------HNIFFIGPQ-RDYALLEKLNIKIVNEQHAETILCTGL--YDDEKDKTEDYRMLLERF-AHRHIPL 156 (282)
Q Consensus 88 ~~~l~~~~-------~~v~viG~~-~~~~~l~~~g~~~~~~~~~~~iv~~g~--~~~~~~~~~~~~~l~~~~-~~~~~~~ 156 (282)
T Consensus 81 ~~~i~~~~~~~~~r~g~iyllg~~~nd~~~~~~~--~~~~~~~~a~a~Li~i~~sE~~~~dlde~~elfap~r~ar~~p~ 158 (243)
T TIGR01459 81 VRSIDELKKSAELRRGIIYLLGSRENDRIALEEL--REVLAEDKADAELIVIVASENEKYDLDEFEELFAPLRAARKVPF 158 (243)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHH--HHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999863257898167772211344436521--24545400272378988466765784569999998864026650
Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHC
Q ss_conf 31266432256630011048999988750476532347770258999998654314889000899738857889999976
Q gi|254780847|r 157 ICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQS 236 (282)
Q Consensus 157 i~~N~D~~~p~~~~~~~~~G~~~~~~~~~~g~~~~~GKP~~~~~~~a~~~l~~~~~~~~~~~~lmIGD~l~tDI~gA~~~ 236 (282)
T Consensus 159 ~CaNPDr~~~~~g~~rygaG~~Ael~~~lGG~Vi~~GKPypaif~~al~~~~----~~~~~~~l~vGDs~~tDi~gan~~ 234 (243)
T TIGR01459 159 LCANPDRVVVSAGRTRYGAGELAELYKELGGKVIYVGKPYPAIFDKALKELE----EREKRRVLFVGDSLVTDIAGANAV 234 (243)
T ss_pred EECCCCCEEECCCCCEECHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHC----CCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 2058651354178400021145787876298799704987899999999742----788864899807067766666678
Q ss_pred CCCEEEECC
Q ss_conf 996999718
Q gi|254780847|r 237 GIDALYVSD 245 (282)
Q Consensus 237 G~~silV~t 245 (282)
T Consensus 235 gidtalvl~ 243 (243)
T TIGR01459 235 GIDTALVLA 243 (243)
T ss_pred HHHHHHHCC
T ss_conf 788886329