RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780847|ref|YP_003065260.1| hypothetical protein
CLIBASIA_03710 [Candidatus Liberibacter asiaticus str. psy62]
(282 letters)
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1,
possible sugar phosphatase, structural genomics; HET:
MSE EPE; 2.10A {Cytophaga hutchinsonii}
Length = 284
Score = 131 bits (330), Expect = 2e-31
Identities = 63/259 (24%), Positives = 97/259 (37%), Gaps = 12/259 (4%)
Query: 4 EITSLRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTN-SPRPSAS 62
+I S +++LP Y I D +GVL LPG + G + TN + R
Sbjct: 3 QIESFKSLLPKYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQ 62
Query: 63 VISQIQSLGSSSQFWDDIITSGDLTHHLLVEESHN--IFFIGPQRDYALLEKLNIKIVNE 120
+ LG S D II+SG +T + + + ++G L IK++
Sbjct: 63 LADSYHKLGLFSITADKIISSGMITKEYIDLKVDGGIVAYLGTANSANYLVSDGIKMLPV 122
Query: 121 QH------AETILCTGLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRG--NKII 172
E L D+ + D + R IP I AN D + I
Sbjct: 123 SAIDDSNIGEVNALVLLDDEGFNWFHDLNKTVNLLRKRTIPAIVANTDNTYPLTKTDVAI 182
Query: 173 PCAGALALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKG 232
G +I L GKP ++ A+ + +K+ IL +GD + TDI G
Sbjct: 183 AIGGVATMIESILGRRFIRFGKPDSQMFMFAYDMLRQKME-ISKREILMVGDTLHTDILG 241
Query: 233 ALQSGIDALYVSDGIHRHE 251
+ G+D V G R +
Sbjct: 242 GNKFGLDTALVLTGNTRID 260
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC,
protein structure initia YORK SGX research center for
structural genomics; 1.60A {Bacillus subtilis}
Length = 266
Score = 119 bits (299), Expect = 7e-28
Identities = 44/246 (17%), Positives = 88/246 (35%), Gaps = 11/246 (4%)
Query: 15 YDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTN-SPRPSASVISQIQSLGSS 73
Y L D+ G ++NG + + ++ ++ G+ + TN S R V ++ S
Sbjct: 6 YKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65
Query: 74 SQFWDDIITSGDLTHHLLVEE-SHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLY 132
+ TS H+ ++ +++ IG + +E+ + E ++
Sbjct: 66 ATEEQVFTTSMATAQHIAQQKKDASVYVIGEEGIRQAIEENGLTFGGENADFVVVG---I 122
Query: 133 DDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMI 192
D + L I N DI ++P G+L + G+ +
Sbjct: 123 DRSITYEKFAVGCLAI--RNGARFISTNGDIAIPTERGLLPGNGSLTSVLTVSTGVQPVF 180
Query: 193 GKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEY 252
I + + L +GD TDI + +G+D L V G+ + E+
Sbjct: 181 IGKPESIIMEQAMR----VLGTDVSETLMVGDNYATDIMAGINAGMDTLLVHTGVTKREH 236
Query: 253 LFNDNI 258
+ +D
Sbjct: 237 MTDDME 242
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD
superfamily, structural genomics; 1.85A {Pyrococcus
horikoshii OT3}
Length = 263
Score = 118 bits (295), Expect = 2e-27
Identities = 60/249 (24%), Positives = 96/249 (38%), Gaps = 16/249 (6%)
Query: 18 ILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTN-SPRPSASVISQIQSLGSSSQF 76
I+ D+ GVL+ G + +PG ++ +E G+ TN S + ++ +G
Sbjct: 4 IIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVSS 63
Query: 77 WDDIITSGDLTHHLLVEESHN--IFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDD 134
IITSG T + + IF IG + ++ L IV A +
Sbjct: 64 S-IIITSGLATRLYMSKHLDPGKIFVIGGEGLVKEMQALGWGIVTLDEARQGSWKEVKHV 122
Query: 135 E----KDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGAL-ALIYQQLNGIV 189
D T + I NPD I P AG++ A + N
Sbjct: 123 VVGLDPDLTYEKLKYATLAIRNGATFIGTNPDATLPGEEGIYPGAGSIIAALKVATNVEP 182
Query: 190 KMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHR 249
+IGKP+ P+YE+ F + + +GD +DTDI A + G+ A+ V G+
Sbjct: 183 IIIGKPNEPMYEVV-------REMFPGEELWMVGDRLDTDIAFAKKFGMKAIMVLTGVSS 235
Query: 250 HEYLFNDNI 258
E +
Sbjct: 236 LEDIKKSEY 244
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein,
PSI, MCSG, structural genomics, protein structure
initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae}
Length = 352
Score = 113 bits (282), Expect = 6e-26
Identities = 50/314 (15%), Positives = 89/314 (28%), Gaps = 78/314 (24%)
Query: 15 YDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTN-SPRPSASVISQIQSLGSS 73
D+ GVL G+K + G ALK N + IL TN + I S
Sbjct: 13 KIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDV 72
Query: 74 SQFWDDIITSGDLTHHLLVEESHNIFFIGPQR---------------------------- 105
II S L+ + I +G
Sbjct: 73 DVSPLQIIQSHTPYKSLV-NKYSRILAVGTPSVRGVAEGYGFQDVVHQTDIVRYNRDIAP 131
Query: 106 ------DYALLEKLNIKIVNEQHAETILCTGLYDDEKDKTEDYRMLL------------E 147
+ + +I + + + +L D + + E
Sbjct: 132 FSGLSDEQVMEYSRDIPDLTTKKFDAVLVFNDPHDWAADIQIISDAINSENGMLNTLRNE 191
Query: 148 RFAHRHIPLICANPDIVANRGNKII-----PCAGALALIYQQLNG---IVKMIGKPHLPI 199
+ IP+ +N D++ K+ + +Y +LNG +GKP
Sbjct: 192 KSGKPSIPIYFSNQDLLWANPYKLNRFGQGAFRLLVRRLYLELNGEPLQDYTLGKPTKLT 251
Query: 200 YEMAFKKI----------------------SSLCNSFNKKRILAIGDGMDTDIKGALQSG 237
Y+ A + + ++ + +GD +DI GA G
Sbjct: 252 YDFAHHVLIDWEKRLSGKIGQSVKQKLPLLGTKPSTSPFHAVFMVGDNPASDIIGAQNYG 311
Query: 238 IDALYVSDGIHRHE 251
++ V G++
Sbjct: 312 WNSCLVKTGVYNEG 325
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 2.40A {Thermotoga maritima} SCOP:
c.108.1.14 PDB: 1pw5_A*
Length = 271
Score = 110 bits (276), Expect = 2e-25
Identities = 53/262 (20%), Positives = 98/262 (37%), Gaps = 14/262 (5%)
Query: 1 MTKEITSLRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPS 60
K +L ++ + D+ G + LPG++ L+ +E + + FTN+
Sbjct: 3 SDKIXXXXXXVLDKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFTNNSSLG 62
Query: 61 ASVISQIQSLGSSSQFWDDIITSGDLT--HHLLVEESHNIFFIGPQRDYALLEKLNIKIV 118
A + D ++TSG++T H L IF +G + + E I
Sbjct: 63 AQDYVRKLRNMGVDVPDDAVVTSGEITAEHMLKRFGRCRIFLLGTPQLKKVFEAYGHVID 122
Query: 119 NEQHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGAL 178
E +L + + +L + I +PDI +P AG++
Sbjct: 123 EENPDFVVLGFDKTLTYERLKKACILL-----RKGKFYIATHPDINCPSKEGPVPDAGSI 177
Query: 179 ALIYQQLNGIVKMI--GKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQS 236
+ G + GKP+ + ++ +K K+R+ +GD + TD+K +
Sbjct: 178 MAAIEASTGRKPDLIAGKPNPLVVDVISEK-----FGVPKERMAMVGDRLYTDVKLGKNA 232
Query: 237 GIDALYVSDGIHRHEYLFNDNI 258
GI ++ V G E L
Sbjct: 233 GIVSILVLTGETTPEDLERAET 254
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
unknown function, HAD superfamily hydrolase., PSI-2;
1.55A {Streptococcus agalactiae serogroup V} PDB: 1ys9_A
1wvi_A 1ydf_A
Length = 264
Score = 109 bits (273), Expect = 6e-25
Identities = 40/244 (16%), Positives = 85/244 (34%), Gaps = 7/244 (2%)
Query: 15 YDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSS 74
Y L D+ G ++ G+ +P ++ +E G+ +L TN+ + + ++ +
Sbjct: 5 YKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVE 64
Query: 75 QFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDD 134
+ I T+ T + + + + + V + + GL +
Sbjct: 65 TPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWN 124
Query: 135 EKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGK 194
T D I NPD+ ++P AG+L + + I +
Sbjct: 125 V---TYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPV--- 178
Query: 195 PHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYLF 254
+ + + + + + +GD TDI + + ID L V+ G E +
Sbjct: 179 -FIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVP 237
Query: 255 NDNI 258
+ I
Sbjct: 238 DLPI 241
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural
genomics, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI-2; 1.72A {Homo sapiens} PDB:
2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Length = 306
Score = 104 bits (260), Expect = 2e-23
Identities = 52/290 (17%), Positives = 99/290 (34%), Gaps = 26/290 (8%)
Query: 6 TSLRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTN-SPRPSASVI 64
+LR +L +L D GVL NG++ +PG L+ G + +N S R +
Sbjct: 12 AALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELA 71
Query: 65 SQIQSLGSSSQFWDDIITSGDLTHHL-------LVEESHNIFFIGPQRDYALLEKLNIKI 117
+ LG + + +S L + +F +G + A L +++
Sbjct: 72 LRFARLGFGGLRAEQLFSSALCAARLLRQRLPGPPDAPGAVFVLGGEGLRAELRAAGLRL 131
Query: 118 VNEQHA-----ETILCTGLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANR-GNKI 171
+ A + + DE R L+ + D
Sbjct: 132 AGDPSAGDGAAPRVRAVLVGYDEHFSFAKLREACAHLRDPECLLVATDRDPWHPLSDGSR 191
Query: 172 IPCAGALALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIK 231
P G+LA + +G ++ P + S + R L +GD ++TDI
Sbjct: 192 TPGTGSLAAAVETASGRQALVVGKPSPYMFECITE----NFSIDPARTLMVGDRLETDIL 247
Query: 232 GALQSGIDALYVSDGIHRHEYLFNDNIDAQMLQNFFTKKNLYPHWWIQQL 281
+ G+ + G+ R E + +L PH++++ +
Sbjct: 248 FGHRCGMTTVLTLTGVSRLEEAQAYLAAG--------QHDLVPHYYVESI 289
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein,
structural genomics, PSI, protein structure initiative;
2.80A {Enterococcus faecalis V583} SCOP: c.108.1.14
Length = 264
Score = 104 bits (260), Expect = 2e-23
Identities = 39/245 (15%), Positives = 86/245 (35%), Gaps = 8/245 (3%)
Query: 15 YDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTN-SPRPSASVISQIQSLGSS 73
Y L D+ G ++ G++ +P ++ +E L + TN + + +V ++ +
Sbjct: 5 YQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDI 64
Query: 74 SQFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYD 133
+ T+ T + E + + L ++ + GL
Sbjct: 65 HVPASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVGLDT 124
Query: 134 DEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIG 193
+ + + +L + I NPD ++P AG++ + +
Sbjct: 125 EL---SYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVYI 181
Query: 194 KPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYL 253
I K++++ +GD +TDI+ +Q+GID+L V+ G +
Sbjct: 182 GKPKAIIMERAIA----HLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAV 237
Query: 254 FNDNI 258
Sbjct: 238 PTLPT 242
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.20A {Mus musculus} PDB:
3hlt_A
Length = 259
Score = 94.3 bits (233), Expect = 3e-20
Identities = 41/245 (16%), Positives = 74/245 (30%), Gaps = 16/245 (6%)
Query: 7 SLRTILPYYDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPSASVISQ 66
+ R + +L D+ G LH +PG ALK R + V TN+ + + + +
Sbjct: 3 ARRAL----KAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKETKKDLLE 58
Query: 67 IQSLGSSSQFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETI 126
D+I TS +L+ ++ + R + Q +
Sbjct: 59 RLKKLEFEISEDEIFTSLTAARNLIEQKQVRPMLLLDDRALPEFTGV-------QTQDPN 111
Query: 127 LCTGLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLN 186
E + R PLI + R + + G +
Sbjct: 112 AVVIGLAPEHFHYQLLNQAF-RLLLDGAPLIAIHKARYYKRKDGLALGPGPFVTALEYAT 170
Query: 187 GIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDG 246
M+ E F + + + IGD D+ GA G+ + V G
Sbjct: 171 DTKAMVVGKP----EKTFFLEALRDADCAPEEAVMIGDDCRDDVDGAQNIGMLGILVKTG 226
Query: 247 IHRHE 251
++
Sbjct: 227 KYKAA 231
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP
phosphatase, carbohydrate metabolism, hydrolase; 1.8A
{Escherichia coli} SCOP: c.108.1.14
Length = 250
Score = 92.5 bits (228), Expect = 1e-19
Identities = 46/245 (18%), Positives = 82/245 (33%), Gaps = 13/245 (5%)
Query: 15 YDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSS 74
++CD+ GVL + +PG L + GL ++L TN P + ++ +
Sbjct: 3 IKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVD 62
Query: 75 QFWDDIITSGDLTHHLL-VEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYD 133
TS T L +E + +G L K I + +
Sbjct: 63 VPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNP-----DFVIVG 117
Query: 134 DEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIG 193
+ + D F I NPD G P GAL ++++G
Sbjct: 118 ETRSYNWDMMHKAAYFVANGARFIATNPD---THGRGFYPACGALCAGIEKISGRKPFYV 174
Query: 194 KPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYL 253
P A + + + +GD + TDI Q+G++ + V G+ + +
Sbjct: 175 GKPSPWIIRAALN----KMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDI 230
Query: 254 FNDNI 258
+
Sbjct: 231 DSMPF 235
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophosphate
phosphatase; hydrolase; 1.92A {Homo sapiens}
Length = 271
Score = 83.5 bits (205), Expect = 5e-17
Identities = 42/265 (15%), Positives = 78/265 (29%), Gaps = 20/265 (7%)
Query: 1 MTKEITSLRTILPYYDVILCDVWGVLHN----GQKFLPGTIPALKEARENGLKVILFTN- 55
M L + +L D+ GVL++ G + G++ A+ + + LKV TN
Sbjct: 2 MAPWGKRLAGV----RGVLLDISGVLYDSGAGGGTAIAGSVEAVARLKRSRLKVRFCTNE 57
Query: 56 SPRPSASVISQIQSLGSSSQFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNI 115
S A ++ Q+Q LG + + L I +
Sbjct: 58 SAASRAELVGQLQRLGFDISEQEVTAPAPAACQILKERGLRPYLLIHDGVRSEFDQ---- 113
Query: 116 KIVNEQHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCA 175
+ + + LI + ++
Sbjct: 114 ---IDTSNPNCVVIADAGESFSYQNMNNAFQVLMELEKPVLISLGKGRYYAATSGLMLDV 170
Query: 176 GALALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQ 235
G + GI + P + + + + + IGD + D+ GA +
Sbjct: 171 GPYMKALEYACGIKAEVVGKPSPEFFKSALQ----AIGVEAHQAVMIGDDIVGDVGGAQR 226
Query: 236 SGIDALYVSDGIHRHEYLFNDNIDA 260
G+ AL V G R + + A
Sbjct: 227 CGMRALQVRTGKFRPSDEHHPEVKA 251
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 41.1 bits (95), Expect = 3e-04
Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 22/226 (9%)
Query: 17 VILCDVWGVLHNGQKFL-PGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQ 75
+I D+ G L + P A+ AR G+ V+L T RP A V + ++ L
Sbjct: 7 LIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTG--RPYAGVHNYLKELHMEQP 64
Query: 76 FWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDE 135
I +G L + + + K+ E +
Sbjct: 65 GDYCITYNGALVQKAADGSTVAQTALSYDDY-----RFLEKLSREVGSHFHALDRTTLYT 119
Query: 136 KDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKP 195
++ Y + E F + C + N + A++ Q + I + + +
Sbjct: 120 ANRDISYYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDEPAILDQAIARIPQEVKEK 179
Query: 196 HLPIYEMAFK--------------KISSLCNSFNKKRILAIGDGMD 227
+ + + K + + I+AIGD +
Sbjct: 180 YTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQEN 225
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 40.0 bits (92), Expect = 7e-04
Identities = 27/227 (11%), Positives = 67/227 (29%), Gaps = 20/227 (8%)
Query: 17 VILCDVWGVL--HNGQKFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSS 74
++L D G L K I A+KEA E G V + T R ++S
Sbjct: 29 LLLIDFDGTLFVDKDIKVPSENIDAIKEAIEKGYMVSICTG--RSKVGILSAFGEENLKK 86
Query: 75 QFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDD 134
+ + G + +V + + + + +L +V + + +
Sbjct: 87 MNFYGM--PGVYINGTIVYDQIGYTLLDETIETDVYAELISYLVEKNLVNQTIFHRGESN 144
Query: 135 EKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGK 194
+ Y L++ + +I + +++ R + + + + +
Sbjct: 145 YVTEDNKYADFLQKMYSENRSIIIRHNEMLKYRTMNKLMIVLDPSESKTVIGNLKQKFKN 204
Query: 195 PHLPIY--------------EMAFKKISSLCNSFNKKRILAIGDGMD 227
+ + + ++L +GD +
Sbjct: 205 KLTIFTTYNGHAEVTKLGHDKYTGINYLLKHYNISNDQVLVVGDAEN 251
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 39.2 bits (91), Expect = 0.001
Identities = 42/244 (17%), Positives = 70/244 (28%), Gaps = 77/244 (31%)
Query: 80 IITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLN---IKIVNEQHAETILCTGLYDDE- 135
++ G L H LLV P + + +L KI+ E DDE
Sbjct: 10 TLSHGSLEHVLLV----------PTASFFIASQLQEQFNKILPEPTEGFA-----ADDEP 54
Query: 136 KDKTEDYRMLLERF----AHRHIPLICA-NPDIVAN----------RGNKIIPCAGALAL 180
E L+ +F + P ++ GN I A L
Sbjct: 55 TTPAE----LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 181 IYQ----QLNGIVK-------MIGKPHLPIYEMA-FKKISSLCNSFNKKRILAI--GDGM 226
+ ++K M +P A F+ + +++AI G G
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE-----GNAQLVAIFGGQGN 165
Query: 227 DTDIKGALQSGIDALYVSDGIHRHEYLFNDNID--AQMLQNF----FTKKNLYPHW---- 276
D L+ LY + L D I A+ L + ++
Sbjct: 166 TDDYFEELRD----LY-----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 277 -WIQ 279
W++
Sbjct: 217 EWLE 220
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 37.4 bits (85), Expect = 0.004
Identities = 25/212 (11%), Positives = 58/212 (27%), Gaps = 4/212 (1%)
Query: 17 VILCDVWGVLHNGQKFLP-GTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQ 75
++ D+ G L + + P L RE + VIL ++ + + L
Sbjct: 11 LVFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQKTLGLQGLPL 70
Query: 76 FWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDE 135
++ + +E I + + + + ++H + + D
Sbjct: 71 IAENGAV---IQLAEQWQEIDGFPRIISGISHGEISLVLNTLREKEHFKFTTFDDVDDAT 127
Query: 136 KDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKP 195
+ H + R + L L + Q ++
Sbjct: 128 IAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQFTARLNELGLQFMQGARFWHVLDAS 187
Query: 196 HLPIYEMAFKKISSLCNSFNKKRILAIGDGMD 227
+ + S + L +GDG +
Sbjct: 188 AGKDQAANWIIATYQQLSGKRPTTLGLGDGPN 219
>3dao_A Putative phosphatse; RER070207001050, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE 1PE CIT; 1.80A {Eubacterium
rectale}
Length = 283
Score = 37.3 bits (85), Expect = 0.004
Identities = 16/218 (7%), Positives = 45/218 (20%), Gaps = 9/218 (4%)
Query: 17 VILCDVWGVL--HNGQKFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSS 74
+I D+ G L P + + + G+ ++ + S +
Sbjct: 23 LIATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLY 82
Query: 75 QFWDDIITSGDLTHHLLVEESHNIF-----FIGPQRDYALLEKLNIKIVNEQHAETILCT 129
+ +I+ + + + + +
Sbjct: 83 ITDGGTVVRTPKEILKTYPMDEDIWKGMCRMVRDELPACDYFAATPDFCFAEDGGSPIFH 142
Query: 130 GLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIV 189
L D + + + + I +PD + A
Sbjct: 143 LLRDSYGFEMREVDDITRLDRNDIIKFTVFHPDKCEELCTPVFIPAWNKKAHLAAAGKEW 202
Query: 190 KMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMD 227
+ + + GD ++
Sbjct: 203 VDCNAKG--VSKWTALSYLIDRFDLLPDEVCCFGDNLN 238
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolase, structural genomics; HET:
MSE; 2.10A {Clostridium difficile 630}
Length = 274
Score = 37.0 bits (84), Expect = 0.005
Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 22/229 (9%)
Query: 15 YDVILCDVWGVLHNGQKFL-PGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSS 73
Y +++ D+ G L + + A++ ++N V++ T R ++ + SLG
Sbjct: 5 YKLLILDIDGTLRDEVYGIPESAKHAIRLCQKNHCSVVICTG--RSMGTIQDDVLSLG-- 60
Query: 74 SQFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYD 133
I G+ + + F ++ L K + + E +
Sbjct: 61 --VDGYIAGGGNYIQYHGELLYNQSFNQRLIKEVVCLLKKREVAFSIESQEKVFMNQKAK 118
Query: 134 DEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKII----------PCAGALALIYQ 183
+ + + +HI + + ++ I ++
Sbjct: 119 EIFETMNQLKGTNSCINKQHIQEKITYENNIEEYKSQDIHKICLWSNEKVFDEVKDILQD 178
Query: 184 QLNGIVKMIGKPHLPIYEMAFKKISSL-----CNSFNKKRILAIGDGMD 227
++ + I + I + F K ++ +K + GDG +
Sbjct: 179 KMELAQRDISSQYYEIIQKDFHKGKAIKRLQERLGVTQKETICFGDGQN 227
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics,
isomerase, structural genomics consortium, SGC; 1.85A
{Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Length = 246
Score = 36.9 bits (84), Expect = 0.005
Identities = 27/216 (12%), Positives = 53/216 (24%), Gaps = 12/216 (5%)
Query: 17 VILCDVWGVL-HNGQKFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQ 75
++L DV G L +K AR G V S
Sbjct: 6 LLLFDVDGTLTPPRLCQTDEMRALIKRARGAGFCVGTVGGSDFAKQVEQLGRD-----VL 60
Query: 76 FWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDE 135
D + + + + + AL +K V +
Sbjct: 61 TQFDYVFAENGLLAYRNGLEIHRQSL----LNALGNDRIVKFVKKTLRLIADLDIPVQRG 116
Query: 136 KDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGA-LALIYQQLNGIVKMIGK 194
M+ R+ + V + +++ A L + + G+
Sbjct: 117 TFVEYRNGMINVSPIGRNCSQAERDEFEVYDNEHRVRASLIAELENSFPDFGLKYSIGGQ 176
Query: 195 PHLPIYEMAFKKISSLCN-SFNKKRILAIGDGMDTD 229
++ + + K L + + I GD
Sbjct: 177 ISFDVFPVGWDKTYCLQFVEDDFEEIHFFGDKTQEG 212
>3ib6_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein structure initiative; 2.20A {Listeria
monocytogenes CLIP81459}
Length = 189
Score = 36.6 bits (84), Expect = 0.007
Identities = 9/59 (15%), Positives = 21/59 (35%)
Query: 31 KFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDIITSGDLTHH 89
L++ ++ G K + +N+ VI ++ + ++D I S
Sbjct: 34 VLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQP 92
Score = 36.3 bits (83), Expect = 0.007
Identities = 15/139 (10%), Positives = 45/139 (32%), Gaps = 11/139 (7%)
Query: 140 EDYRMLLERFAHRHIPLICA--NPDIVANRGNKIIPCAGAL----ALIYQQLNGIVKMIG 193
++ + LE+ +++ G + + +
Sbjct: 37 KNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKME 96
Query: 194 KPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYL 253
KP I++ +K + +G+ ++DI GA ++GI A+++ + +
Sbjct: 97 KPDKTIFDFTLNA-----LQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDE 151
Query: 254 FNDNIDAQMLQNFFTKKNL 272
+ + + ++
Sbjct: 152 RLPLVAPPFVIPVWDLADV 170
>3niw_A Haloacid dehalogenase-like hydrolase; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.90A
{Bacteroides thetaiotaomicron}
Length = 279
Score = 36.7 bits (84), Expect = 0.007
Identities = 27/212 (12%), Positives = 69/212 (32%), Gaps = 14/212 (6%)
Query: 26 LHNGQKFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDIITSGD 85
++ ++ L +E G++++L + RP+ ++ L + + +G
Sbjct: 17 TNSKKEISSRNRETLIRIQEQGIRLVLASG--RPTYGIVPLANELRMNEFGGFILSYNGG 74
Query: 86 LTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDEKDKTEDYRML 145
+ +E + + L E ++ + + ++ D
Sbjct: 75 EIINWESKEMMYENVLPNEVVPVLYECARTNHLSILTYDG--AEIVTENSLDPYVQKEAF 132
Query: 146 LERFAHRHIPLICANPD------IVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPI 199
L + A R + ++ K+IP L + Q + + +
Sbjct: 133 LNKMAIRETNDFLTDITLPVAKCLIVGDAGKLIPVESELCIRLQGKINVFRSEPYFLELV 192
Query: 200 YEMAFKKISSL----CNSFNKKRILAIGDGMD 227
+ K +S ++ ++AIGDG +
Sbjct: 193 PQGIDKALSLSVLLENIGMTREEVIAIGDGYN 224
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 36.2 bits (82), Expect = 0.009
Identities = 20/214 (9%), Positives = 53/214 (24%), Gaps = 15/214 (7%)
Query: 17 VILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQF 76
+I D+ L G + P ++E ++ G ++I ++ + A + L +
Sbjct: 4 LIFLDIDKTLIPGYEP-DPAKPIIEELKDMGFEIIFNSS--KTRAEQEYYRKEL----EV 56
Query: 77 WDDIITSG----DLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLY 132
I+ + + + I+ ++
Sbjct: 57 ETPFISENGSAIFIPKGYFPFDVKGKEVGNYIVIELGIRVEKIREELKKLENIYGLKYYG 116
Query: 133 DDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMI 192
+ K++ E + + + + +R +
Sbjct: 117 NSTKEEIEKFTGMPPELVPLAMEREYSETIFEWSRDGWEEVLVEGGFKVTMGSRFYTVHG 176
Query: 193 GKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGM 226
A K + + A+GD
Sbjct: 177 NSDK----GKAAKILLDFYKRLGQIESYAVGDSY 206
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron vpi-5482}
SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 36.1 bits (82), Expect = 0.010
Identities = 29/223 (13%), Positives = 61/223 (27%), Gaps = 20/223 (8%)
Query: 15 YDVILCDVWGVL--HNGQKFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGS 72
+ D+ G L + TI AL+ A GLK+ + T P+ + +S++Q
Sbjct: 2 TKALFFDIDGTLVSFETHRIPSSTIEALEAAHAKGLKIFIATGRPKAIINNLSELQDRN- 60
Query: 73 SSQFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLY 132
D IT + E + + ++ I
Sbjct: 61 ---LIDGYITMNGAYCFVGEEVIYKSAIPQEEVKAM------AAFCEKKGVPCIFVEEHN 111
Query: 133 DDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGA--LALIYQQLNGIVK 190
E + + F H ++ + + ++ P + +
Sbjct: 112 ISVCQPNEMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVLPSIPTCEI 171
Query: 191 MIGKPH-LPIYEMAFKKISSL-----CNSFNKKRILAIGDGMD 227
P + K + + ++ GDG +
Sbjct: 172 GRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGN 214
>3dnp_A Stress response protein YHAX; structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics, MCSG; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 34.5 bits (78), Expect = 0.025
Identities = 32/230 (13%), Positives = 73/230 (31%), Gaps = 23/230 (10%)
Query: 15 YDVILCDVWGVLHNGQKFL-PGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLG-- 71
++ ++ G L + T A++ ++ G+ V L TN R S +SL
Sbjct: 6 KQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTN--RHFRSAQKIAKSLKLD 63
Query: 72 --------------SSSQFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKI 117
+ F++ I+ + + V ES+ Y++ K +
Sbjct: 64 AKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQCNIRLLHEKYSIGNKKKVNS 123
Query: 118 VNEQHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGA 177
A ++ + +L++ + + DI + I A
Sbjct: 124 NLLGKALIHPSDPIFYPVQFVESLSDLLMDEPVSAPVIEVYTEHDIQHDITETITKAFPA 183
Query: 178 LALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMD 227
+ +I + + + + A + + + ++AIG D
Sbjct: 184 VDVIRVNDEKLNIV----PKGVSKEAGLALVASELGLSMDDVVAIGHQYD 229
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis}
PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A*
1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Length = 221
Score = 34.0 bits (77), Expect = 0.037
Identities = 17/136 (12%), Positives = 37/136 (27%), Gaps = 13/136 (9%)
Query: 140 EDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPI 199
LL+ I + A+ + G ++ + KP I
Sbjct: 94 PGILQLLKDLRSNKIKIALAS---ASKNGPFLLERMNLTGYFDAIADPAEVAASKPAPDI 150
Query: 200 YEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHE--YLFND- 256
+ A + + + D I+ SG + V + + D
Sbjct: 151 FIAAAHAVG-----VAPSESIGLED-SQAGIQAIKDSGALPIGVGRPEDLGDDIVIVPDT 204
Query: 257 -NIDAQMLQNFFTKKN 271
+ + L+ + +K
Sbjct: 205 SHYTLEFLKEVWLQKQ 220
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
PSI, protein structure initiative; 1.40A {Streptococcus
pneumoniae TIGR4} SCOP: c.108.1.3
Length = 190
Score = 33.9 bits (76), Expect = 0.041
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 191 MIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRH 250
++ + + + L + L IGD DI+ +G+D + ++
Sbjct: 127 VVTSSSGFKRKPNPESMLYLREKYQISSGLVIGD-RPIDIEAGQAAGLDTHLFTSIVNLR 185
Query: 251 EYL 253
+ L
Sbjct: 186 QVL 188
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 33.5 bits (76), Expect = 0.052
Identities = 12/103 (11%), Positives = 25/103 (24%), Gaps = 2/103 (1%)
Query: 33 LPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDIITSGDLTHHLLV 92
+ L + + G ++ + T P V ++LG F D I +
Sbjct: 217 VDEVKVLLNDLKGAGFELGIATGRPYTETVVP--FENLGLLPYFEADFIATASDVLEAEN 274
Query: 93 EESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDE 135
P + + + D+
Sbjct: 275 MYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDD 317
Score = 30.4 bits (68), Expect = 0.50
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 193 GKPHLPIYEMAFKK---------ISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYV 243
GKP+ Y A I+ N NK + +GD + D+ A + G +
Sbjct: 283 GKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSL-ADLLSAQKIGATFIGT 341
Query: 244 SDGIHRHE 251
G+ +
Sbjct: 342 LTGLKGKD 349
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 33.7 bits (76), Expect = 0.054
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 11/138 (7%)
Query: 17 VILCDVWGVLHNGQKFL-PGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQ 75
+I D+ G L N + + AL++A+ +G++V++ T R V+S + LG
Sbjct: 6 LIAIDLDGTLLNSKHQVSLENENALRQAQRDGIEVVVSTG--RAHFDVMSIFEPLG---- 59
Query: 76 FWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDE 135
+I++ H ++ I +R Y +L L +E + +
Sbjct: 60 IKTWVISANGAVIHDPEGRLYHHETIDKKRAYDILSWLE----SENYYYEVFTGSAIYTP 115
Query: 136 KDKTEDYRMLLERFAHRH 153
++ E + L+RF +
Sbjct: 116 QNGRELLDVELDRFRSAN 133
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A
{Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A*
2hf2_A
Length = 271
Score = 32.7 bits (73), Expect = 0.10
Identities = 27/217 (12%), Positives = 64/217 (29%), Gaps = 21/217 (9%)
Query: 17 VILCDVWGVLHNGQKFL--PGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSS 74
VI+ D+ G N K P + +E ++ G+K ++ S +IS L
Sbjct: 5 VIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVV--ASGNQYYQLISFFPELKDEI 62
Query: 75 Q----------------FWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIV 118
F ++ + + + F+ A + + +
Sbjct: 63 SFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQLNFVACGLQSAYVSENAPEAF 122
Query: 119 NEQHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGAL 178
A+ D ++ + IPL+ + + K +
Sbjct: 123 VALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVTSGFGF 182
Query: 179 ALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFN 215
+ I L ++++ + + ++ +S N
Sbjct: 183 IDLIIPGLHKANGI-SRLLKRWDLSPQNVVAIGDSGN 218
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 32.4 bits (73), Expect = 0.10
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 6/115 (5%)
Query: 26 LHNGQKFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDIITSGD 85
L+ + TI A++ A+ G+KV+L T RP V + ++ I +G
Sbjct: 17 LNEKNELAQATIDAVQAAKAQGIKVVLCTG--RPLTGVQPYLDAMDIDGDDQYAITFNGS 74
Query: 86 LTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDEKDKTE 140
+ + S + ++ H + +Y KD +
Sbjct: 75 VAQTI----SGKVLTNHSLTYEDYIDLEAWARKVRAHFQIETPDYIYTANKDISA 125
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain-
containing protein 1A; HDHD1A, haloacid
dehalogenase-like hydrolase domain containing 1A; 2.00A
{Homo sapiens}
Length = 250
Score = 32.4 bits (73), Expect = 0.11
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 2/109 (1%)
Query: 145 LLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEMAF 204
L+ IP A A+ K +L + G + P ++
Sbjct: 120 LIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGK-PDPDIFL 178
Query: 205 KKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYL 253
++ L D ++ AL +G+ + V DG +
Sbjct: 179 ACAKRFSPPPAMEKCLVFED-APNGVEAALAAGMQVVMVPDGNLSRDLT 226
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics,
protein structure initiative, NEW research center for
structural genomics; 3.00A {Bacillus subtilis}
Length = 233
Score = 32.4 bits (73), Expect = 0.12
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 10/84 (11%)
Query: 193 GKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHE- 251
GKP I+ A + AI D I +G+ A+ V G
Sbjct: 145 GKPDPDIFLTAAAM-----LDVSPADCAAIEDAE-AGISAIKSAGMFAVGVGQGQPMLGA 198
Query: 252 -YLFND--NIDAQMLQNFFTKKNL 272
+ ++ ++L + + +
Sbjct: 199 DLVVRQTSDLTLELLHEEWEQYRI 222
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase,
protein phosphatase, alternative splicing, hydrolase,
metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Length = 187
Score = 31.6 bits (71), Expect = 0.19
Identities = 14/113 (12%), Positives = 38/113 (33%), Gaps = 11/113 (9%)
Query: 140 EDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPI 199
+ +L+R +P A+ R ++I L L + + I
Sbjct: 71 PEVPEVLKRLQSLGVPGAAAS------RTSEIEGANQLLELFDLFRYFVHREIYPGSKI- 123
Query: 200 YEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEY 252
F+++ +++ D +I + G+ +++ +G++
Sbjct: 124 --THFERLQQKTG-IPFSQMIFFDD-ERRNIVDVSKLGVTCIHIQNGMNLQTL 172
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 31.8 bits (71), Expect = 0.19
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 42 EARENGLKVILFTNSPRPSASVISQ--IQ-SLG---SSSQFWDDIITSGD-LTH----HL 90
R G KV L + ++ I++ + S+G S D I GD L +
Sbjct: 17 ALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNY 76
Query: 91 LVEESHNI 98
+ E+ N+
Sbjct: 77 VTSEAKNV 84
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily,
GMHB, D-glycero-D-manno-heptose-1, 7- bisphosphate
phosphatase; HET: FX1; 1.68A {Bordetella
bronchiseptica}
Length = 179
Score = 31.7 bits (71), Expect = 0.20
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 17 VILCDVWGVLHNGQ--KFLPGTIPALKEARENGLKVILFTNSP 57
V+ D + + LPG++ A+ + V+L TN
Sbjct: 11 VVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQS 53
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function, NPPSFA; 2.60A
{Geobacillus kaustophilus HTA426} PDB: 2qyh_A
Length = 258
Score = 31.1 bits (69), Expect = 0.31
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 15 YDVILCDVWGVLHNGQKFL-PGTIPALKEARENGLKVILFTNSPRPSASVISQIQSL 70
++ D+ G L + QK L TI A++ +++G+ V + T R + L
Sbjct: 3 RKIVFFDIDGTLLDEQKQLPLSTIEAVRRLKQSGVYVAIATG--RAPFMFEHVRKQL 57
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter
autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A*
1aq6_A
Length = 253
Score = 30.8 bits (68), Expect = 0.33
Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 12/94 (12%)
Query: 194 KPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYV------SDGI 247
KPH Y + + + +L + D+ GA G V +
Sbjct: 147 KPHPDSYALVEEVLG-----VTPAEVLFVSSNG-FDVGGAKNFGFSVARVARLSQEALAR 200
Query: 248 HRHEYLFNDNIDAQMLQNFFTKKNLYPHWWIQQL 281
+ L+ P + + L
Sbjct: 201 ELVSGTIAPLTMFKALRMREETYAEAPDFVVPAL 234
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 30.5 bits (68), Expect = 0.43
Identities = 23/181 (12%), Positives = 49/181 (27%), Gaps = 34/181 (18%)
Query: 108 ALLEKLNIKIVNEQHAETILCTGLYD--------DEKDKTEDYRMLLERFAHRHIPLICA 159
L K +I++ + + L DE+ T + F + +
Sbjct: 28 YSLNKFDIQVEDLSSLNKFVGPPLKTSFMEYYNFDEETATVAIDYYRDYFKAKGMFENKV 87
Query: 160 NPDIVA---------NRGNKIIPCAGALALIYQQLN-----------GIVKMIGKPHLPI 199
I A + + + +
Sbjct: 88 YDGIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLAFYFDAIVGSSLDGKLSTKEDV 147
Query: 200 YEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYLFNDNID 259
A + + + IGD + D+ GAL++ + ++ V+ G +E L N +
Sbjct: 148 IRYAMES-----LNIKSDDAIMIGDR-EYDVIGALKNNLPSIGVTYGFGSYEELKNAGAN 201
Query: 260 A 260
Sbjct: 202 Y 202
>3k1z_A Haloacid dehalogenase-like hydrolase domain- containing protein 3;
HDHD3, structural genomics, structural genomics
consortium, SGC; 1.55A {Homo sapiens}
Length = 263
Score = 30.4 bits (67), Expect = 0.45
Identities = 19/163 (11%), Positives = 39/163 (23%), Gaps = 12/163 (7%)
Query: 106 DYALLEKLNIKIVNEQHAETILCTGLYDDEKDKTEDYRMLLERFAHRH----IPLICANP 161
+Y L L + D + L + F+H +
Sbjct: 56 NYGLSHGLTSRQWWLDVVLQTFHLAGVQDAQAVAPIAEQLYKDFSHPCTWQVLDGAEDTL 115
Query: 162 DIVANRGNKIIPCAGALALIYQQLNGI--------VKMIGKPHLPIYEMAFKKISSLCNS 213
RG ++ + + L G+ V P + + +
Sbjct: 116 RECRTRGLRLAVISNFDRRLEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLAH 175
Query: 214 FNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYLFND 256
+GD D +G G+ + V + +
Sbjct: 176 MEPVVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVRDS 218
>2gfh_A Haloacid dehalogenase-like hydrolase domain containing 4; 17391249,
protein C20ORF147 homolog, structural genomics, PSI;
1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Length = 260
Score = 30.2 bits (66), Expect = 0.50
Identities = 24/177 (13%), Positives = 50/177 (28%), Gaps = 5/177 (2%)
Query: 85 DLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDEKDKTEDYRM 144
L+ S I + +++ N + AE Y K + +
Sbjct: 67 KLSKECFHPYSTCITDVRTSHWEEAIQETKGGADNRKLAEEC-----YFLWKSTRLQHMI 121
Query: 145 LLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEMAF 204
L + L ++ G++ A Q + + G+ +
Sbjct: 122 LADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQSYFDAIVIGGEQKEEKPAPSI 181
Query: 205 KKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYLFNDNIDAQ 261
+ +GD ++TDI+G L +G+ A + R +
Sbjct: 182 FYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYM 238
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Bacteroides
fragilis nctc 9343}
Length = 225
Score = 30.3 bits (67), Expect = 0.58
Identities = 17/121 (14%), Positives = 32/121 (26%), Gaps = 7/121 (5%)
Query: 140 EDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPI 199
D L + I + + + + V KP
Sbjct: 92 PDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPDDWFDIIIGGEDVTHH-KPDPEG 150
Query: 200 YEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYLFNDNID 259
+A ++ + +L IGD D A +G+ V+ G+ + D
Sbjct: 151 LLLAIDRLK-----ACPEEVLYIGDS-TVDAGTAAAAGVSFTGVTSGMTTAQEFQAYPYD 204
Query: 260 A 260
Sbjct: 205 R 205
>1yj5_A 5' polynucleotide kinase-3' phosphatase catalytic domain; beta
sandwich, P-loop, transferase; 2.80A {Mus musculus}
SCOP: c.108.1.9 c.37.1.1
Length = 383
Score = 30.0 bits (67), Expect = 0.59
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 32 FLPGTIPALKEARENGLKVILFTN 55
P L+E G K+++FTN
Sbjct: 55 LYPEIPKKLQELAAEGYKLVIFTN 78
>2go7_A Hydrolase, haloacid dehalogenase-like family; NP_346487.1,
structural genomics, PSI, protein structure initiative;
2.10A {Streptococcus pneumoniae TIGR4} SCOP: c.108.1.6
Length = 207
Score = 29.8 bits (65), Expect = 0.65
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 214 FNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYLFNDNID 259
N IGD D++ A SGI ++ + + + D
Sbjct: 155 LNSDNTYYIGDR-TLDVEFAQNSGIQSINFLESTYEGNHRIQALAD 199
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural
genomics, NPPSFA; 1.70A {Pyrococcus horikoshii OT3}
Length = 241
Score = 29.4 bits (64), Expect = 0.83
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 211 CNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYL 253
+ + L +GD + +DI GA + G+ ++ G H L
Sbjct: 162 AFNVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSEREL 204
>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310,
phosphatase, PFAM PF03332, HAD superfamily, jaecken
disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB:
2q4r_A
Length = 246
Score = 29.3 bits (64), Expect = 0.93
Identities = 22/216 (10%), Positives = 53/216 (24%), Gaps = 12/216 (5%)
Query: 17 VILCDVWGVL-HNGQKFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQ 75
+ L DV G L QK L++ R+ ++ V Q+ +
Sbjct: 8 LCLFDVDGTLTAPRQKITKEMDDFLQKLRQKIKIGVVGG---SDFEKVQEQLGNDVVEKY 64
Query: 76 FWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDE 135
+ + L+ + + + + + I +
Sbjct: 65 DYVFP------ENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGT 118
Query: 136 KDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKP 195
+ + + + + + N L + + G+
Sbjct: 119 FIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFSIGGQI 178
Query: 196 HLPIYEMAFKKISSLCN--SFNKKRILAIGDGMDTD 229
++ + K L + + K I GD
Sbjct: 179 SFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPG 214
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein,
hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19
PDB: 3esq_A 3esr_A
Length = 211
Score = 29.1 bits (64), Expect = 1.0
Identities = 11/77 (14%), Positives = 27/77 (35%)
Query: 31 KFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDIITSGDLTHHL 90
+F+ G I A++E ++ G +++ TN + ++ Q + + +
Sbjct: 50 EFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGI 109
Query: 91 LVEESHNIFFIGPQRDY 107
H + R
Sbjct: 110 YYCPHHPQGSVEEFRQV 126
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 29.0 bits (63), Expect = 1.1
Identities = 17/123 (13%), Positives = 30/123 (24%), Gaps = 13/123 (10%)
Query: 42 EARENGLKVILFTNSPRP-SASVISQ-----IQSLGSSSQFWDDIITSGDLTHHLLVEES 95
A E G V+L + IS + + + I +G +
Sbjct: 44 GAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIF- 102
Query: 96 HNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIP 155
+ E L +K+ E H + D L + P
Sbjct: 103 ------NNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTP 156
Query: 156 LIC 158
+
Sbjct: 157 VET 159
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.40A {Porphyromonas gingivalis
W83}
Length = 211
Score = 29.0 bits (63), Expect = 1.2
Identities = 9/120 (7%), Positives = 23/120 (19%), Gaps = 1/120 (0%)
Query: 134 DEKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIG 193
++ + L + + P V
Sbjct: 85 GFLEEISAEKFDYIDSLRPDYRLFLLSNTNPYVLDLAMSPRFLPSGRTLDSFFDKVYASC 144
Query: 194 KPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYL 253
+ + + L I D ++ A + G +G + +
Sbjct: 145 QMGKYKPNEDIFLEMIADSGMKPEETLFIDD-GPANVATAERLGFHTYCPDNGENWIPAI 203
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.60A {Pseudomonas fluorescens}
Length = 205
Score = 28.8 bits (64), Expect = 1.3
Identities = 17/111 (15%), Positives = 30/111 (27%), Gaps = 10/111 (9%)
Query: 145 LLERFAHRHIPL--ICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEM 202
L+ A R L + N +A+ + I A A P +
Sbjct: 78 LVRELAGRGYRLGILTRNARELAHVTLEAIGLADCFAEADVLGRDEAPPKPHPGGLLKLA 137
Query: 203 AFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYL 253
+S +GD D+ +G + V+ + L
Sbjct: 138 EAWDVSPSRMVM-------VGDYR-FDLDCGRAAGTRTVLVNLPDNPWPEL 180
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomics, PSI, protein structure initiative; HET: G1P;
2.00A {Escherichia coli K12} SCOP: c.108.1.2
Length = 206
Score = 29.0 bits (63), Expect = 1.3
Identities = 13/114 (11%), Positives = 33/114 (28%), Gaps = 6/114 (5%)
Query: 140 EDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPI 199
+ ++ + + ++ + + I + I
Sbjct: 94 PEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPE----IRDAADHIYLSQDLGMRKP 149
Query: 200 YEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYL 253
++ + F+ + D +I+GA Q GI ++ V D +Y
Sbjct: 150 EARIYQHVLQAEG-FSPSDTVFFDD-NADNIEGANQLGITSILVKDKTTIPDYF 201
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl
5'-monophosphate synthetase...; ATP-grAsp superfamily,
ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus
jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A*
2r7m_A* 2r7n_A*
Length = 361
Score = 28.8 bits (64), Expect = 1.4
Identities = 25/217 (11%), Positives = 61/217 (28%), Gaps = 40/217 (18%)
Query: 39 ALKEARENGLKVILFTNSPRPSAS----VISQIQSLGSSSQFWDDII------TSGDLTH 88
LK A+ G + T R V + + + S ++ I + +
Sbjct: 32 ILKGAKLEGFSTVCITMKGRDVPYKRFKVADKFIYVDNFSDIKNEEIQEKLRELNSIVVP 91
Query: 89 HL---------LVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDEKDKT 139
H VE S + G + +L + + + + E +
Sbjct: 92 HGSFIAYCGLDNVENSFLVPMFGNR---RILRWESERSLEGKLLREAGLRVPKKYESPED 148
Query: 140 EDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPI 199
D ++++ R RG I + L + +
Sbjct: 149 IDGTVIVKFPGARG------------GRGYFIASSTEEFYKKAEDLKKRGILTDEDIANA 196
Query: 200 YEMAFKKISSLCNSF------NKKRILAIGDGMDTDI 230
+ + ++ C + ++ +L + +++I
Sbjct: 197 HIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRYESNI 233
>2grr_B RAN GTPase-activating protein 1; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} SCOP: a.118.12.1 PDB: 2grn_B 2grp_B 2grq_B
2gro_B 1z5s_C 2io2_C 2io3_C 2iy0_C 1kps_B
Length = 170
Score = 28.3 bits (63), Expect = 2.0
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 15/87 (17%)
Query: 178 LALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSG 237
L L + I + AF K+SS+ + ++ A+Q
Sbjct: 30 LRLGPKSSVLIAQQTDTSDPEKVVSAFLKVSSVFKD-------------EATVRMAVQDA 76
Query: 238 IDALYVS--DGIHRHEYLFNDNIDAQM 262
+DAL + + F + M
Sbjct: 77 VDALMQKAFNSSSFNSNTFLTRLLVHM 103
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1,
structural genomics, joint center for structural
genomics, JCSG; 1.81A {Xanthomonas campestris PV}
Length = 251
Score = 28.2 bits (61), Expect = 2.1
Identities = 15/164 (9%), Positives = 34/164 (20%), Gaps = 5/164 (3%)
Query: 88 HHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDEKDKTEDYRMLLE 147
L +R+ + + I T + +D +
Sbjct: 46 LDLGDSRMQQHLLAVERRNLKIFGYGAKGMTLSMIETAIELTEARIEARDIQRIVEIGRA 105
Query: 148 RFAHRHIPL-----ICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEM 202
H + A +Q + +
Sbjct: 106 TLQHPVEVIAGVREAVAAIAADYAVVLITKGDLFHQEQKIEQSGLSDLFPRIEVVSEKDP 165
Query: 203 AFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDG 246
+R + IG+ + +D++ L G +Y
Sbjct: 166 QTYARVLSEFDLPAERFVMIGNSLRSDVEPVLAIGGWGIYTPYA 209
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET:
AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8
d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Length = 334
Score = 28.2 bits (62), Expect = 2.1
Identities = 16/121 (13%), Positives = 40/121 (33%), Gaps = 14/121 (11%)
Query: 37 IPALKEARENGLKVILFTNSPRPSA---------SVISQIQSLGSSSQFWDDIITSGDLT 87
+ LK A++ G + I F +S I + ++ +G
Sbjct: 14 LQILKGAKDEGFETIAFGSSKVKPLYTKYFPVADYFIEEKYPEEELLNLNAVVVPTGSFV 73
Query: 88 HHLLVE--ESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDEKDKTEDYRML 145
HL +E E+ + + G + +L + + + + + E + ++
Sbjct: 74 AHLGIELVENMKVPYFGNK---RVLRWESDRNLERKWLKKAGIRVPEVYEDPDDIEKPVI 130
Query: 146 L 146
+
Sbjct: 131 V 131
>1nof_A Xylanase; glycohydrolase family 5, carbohydrate-binding module,
catalytic domain; 1.42A {Erwinia chrysanthemi} SCOP:
b.71.1.2 c.1.8.3
Length = 383
Score = 28.2 bits (62), Expect = 2.2
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 37 IPALKEARENGLKVILFTNSPRP 59
+P+ ++A G K++ SP
Sbjct: 65 LPSARQAVSLGAKIMATPWSPPA 87
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A
{Escherichia coli}
Length = 387
Score = 28.1 bits (62), Expect = 2.6
Identities = 28/196 (14%), Positives = 70/196 (35%), Gaps = 23/196 (11%)
Query: 36 TIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDIITSGDLTHHLLVEES 95
++P ++ A + G KV++ ++ RP+ ++ SL + ++L + S
Sbjct: 40 SLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSL-------------LPVVNYLKDKLS 86
Query: 96 HNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDEKDKTEDYRMLLERFAHRHIP 155
+ + + D + + + ++ G D++ ++ Y L + F
Sbjct: 87 NPVRLVKDYLDGVDVAEGELVVLENVR----FNKGEKKDDETLSKKYAALCDVFVMDAFG 142
Query: 156 LICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEM-----AFKKISSL 210
G L+ +L+ + K + +P P+ + K++ L
Sbjct: 143 TAHRAQASTHGIGKFADVACAGP-LLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVL 201
Query: 211 CNSFNKKRILAIGDGM 226
+ L +G G+
Sbjct: 202 DSLSKIADQLIVGGGI 217
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1;
glucosamine-6-phosphate synthase, aldose/ketose
isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo
sapiens} PDB: 2zj4_A* 2v4m_A*
Length = 375
Score = 27.8 bits (61), Expect = 3.1
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 22 VWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSP 57
+ + +G+ T+ L+ +E G + TN+
Sbjct: 111 CFFLSQSGET--ADTLMGLRYCKERGALTVGITNTV 144
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, cytoplasm,
detoxification, magnesium, metal-binding, peroxisome,
polymorphism; HET: 34N; 1.95A {Homo sapiens} PDB:
1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A*
Length = 555
Score = 27.6 bits (60), Expect = 3.1
Identities = 10/100 (10%), Positives = 31/100 (31%), Gaps = 11/100 (11%)
Query: 145 LLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKM----IGKPHLPIY 200
+ + +R + A + + + +++ + KP IY
Sbjct: 108 AALMLRKKGFTTAILTNTWLDDRA-ERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIY 166
Query: 201 EMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDA 240
+ + + ++ + D + ++K A G+
Sbjct: 167 KFLLDTL-----KASPSEVVFLDD-IGANLKPARDLGMVT 200
>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein,
electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA
3PH; 1.90A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1
PDB: 3ir7_A* 1y5i_A* 1siw_A* 1y4z_A* 1r27_A* 1y5l_A*
1y5n_A* 3ir6_A* 3ir5_A*
Length = 1247
Score = 27.6 bits (60), Expect = 3.5
Identities = 9/53 (16%), Positives = 13/53 (24%), Gaps = 7/53 (13%)
Query: 13 PYYDVILCDV---WGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPSAS 62
D WG N + E R G K + +P +
Sbjct: 240 ESADWYNSSYIIAWG--SNVPQTRTPDAHFFTEVRYKGTKTVAV--TPDYAEI 288
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate- methylating enzyme,
oxidoreductase; HET: NAD FAD FMN; 1.85A
{Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A*
1vrq_A*
Length = 965
Score = 27.6 bits (60), Expect = 3.5
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 34 PGTIPALKEARENGLKVILFTNSPRPSASVISQIQSL--GSSSQFWDDIITS 83
P + A +EA +G +V+L +++ G S W + +TS
Sbjct: 138 PAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTS 189
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 27.5 bits (60), Expect = 3.6
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 14/58 (24%)
Query: 42 EARENGLKVILFTNSPRP-SASVISQ--IQSLGSSSQ-----------FWDDIITSGD 85
A++ G VIL +P S+IS + ++G+ Q F +D + G
Sbjct: 139 AAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGR 196
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.51A {Lactobacillus delbrueckii}
Length = 240
Score = 27.5 bits (59), Expect = 3.6
Identities = 29/246 (11%), Positives = 56/246 (22%), Gaps = 24/246 (9%)
Query: 15 YDVILCDVWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSPRPSASVISQIQSLGSSS 74
Y + D+ G + + AL A E + + I G
Sbjct: 4 YKAAIFDMDGTILD---TSADLTSALNYAFEQ------TGHRHDFTVEDIKNFFGSGVVV 54
Query: 75 QFWDDIITSGDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDD 134
+ + LV I + ++ + TG +
Sbjct: 55 AVTRALAYEAGSSRESLVAFGTKDEQIPEAVTQTEVNRVLEVFKPYYADHCQIKTGPFPG 114
Query: 135 EKDKTEDYRMLLERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGK 194
D ++ R + A NK L + + K
Sbjct: 115 ILDLMKNLRQKGVKLAVVS---------------NKPNEAVQVLVEELFPGSFDFALGEK 159
Query: 195 PHLPIYEMAFKKISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYLF 254
+ + + + DI+ A S +D + V+ G +L
Sbjct: 160 SGIRRKPAPDMTSECVKVLGVPRDKCVYIGDSEIDIQTARNSEMDEIAVNWGFRSVPFLQ 219
Query: 255 NDNIDA 260
Sbjct: 220 KHGATV 225
>2o2x_A Hypothetical protein; NP_103874.1, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative, PSI-2; 1.50A {Mesorhizobium loti} SCOP:
c.108.1.19
Length = 218
Score = 27.2 bits (59), Expect = 4.0
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 31 KFLPGTIPALKEARENGLKVILFTNSPRP 59
P +PA+ A G+ V++ TN
Sbjct: 56 VLRPQMLPAIATANRAGIPVVVVTNQSGI 84
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing];
amidotransferase, ammonia channeling, glucosamine 6-
phosphate synthase; HET: F6R; 2.05A {Escherichia coli}
SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X
2vf5_X*
Length = 608
Score = 27.1 bits (59), Expect = 4.8
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 83 SGDLTH--HLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDEKDKTE 140
+G+L H L++ + + P + K NI+ V + + +
Sbjct: 499 AGELKHGPLALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDN 558
Query: 141 DYRMLLERFAHRHIPLICANP 161
+ + + P+ P
Sbjct: 559 MHIIEMPHVEEVIAPIFYTVP 579
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose
binding protein, periplasmic binding protein, GBP; HET:
BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Length = 313
Score = 27.0 bits (58), Expect = 5.2
Identities = 4/52 (7%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 39 ALKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDIITSGDLTHHL 90
+ G+ F + + ++S ++ + I + +
Sbjct: 22 VKAAGKALGVDTKFFVPQKEDINAQLQMLESF--IAEGVNGIAIAPSDPTAV 71
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh
zinc-binding motif, hydrolase; HET: EPE; 2.50A
{Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1
PDB: 1hr7_B 1hr8_B* 1hr9_B*
Length = 443
Score = 26.9 bits (58), Expect = 5.7
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 37 IPALKEAR-ENGLKVILFTNSPRPSASV 63
IP + ++ NGL + SA+V
Sbjct: 4 IPGTRTSKLPNGLTIATEYIPNTSSATV 31
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 26.7 bits (58), Expect = 5.9
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 42 EARENGLKVILFTNSPRP-SASVISQ 66
AR+ G KVIL P P + ++
Sbjct: 144 SARDAGAKVILLEKEPIPGGNTKLAA 169
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 26.8 bits (58), Expect = 6.0
Identities = 6/64 (9%), Positives = 16/64 (25%), Gaps = 1/64 (1%)
Query: 40 LKEARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDIITSGDLTHHLLVEESHNIF 99
+ A GL P + + + L + + ++ + I
Sbjct: 17 FERAEALGLPYKKV-YVPALPMVLGERPKELEGVTVALERCVSQSRGLAAARYLTALGIP 75
Query: 100 FIGP 103
+
Sbjct: 76 VVNR 79
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of
haloacid dehalogenase- like superfamily; HET: MSE PG4;
1.66A {Deinococcus radiodurans R1}
Length = 200
Score = 26.6 bits (57), Expect = 6.3
Identities = 15/108 (13%), Positives = 31/108 (28%), Gaps = 7/108 (6%)
Query: 146 LERFAHRHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEMAFK 205
L R + + N + I G + + KP+ +Y +
Sbjct: 94 LARDLGQRYRMYSLNNEGRDLN-EYRIRTFGLGEFLLAFFTSSALGVMKPNPAMYRLGLT 152
Query: 206 KISSLCNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYL 253
+ + + D +++ A G+ A+ D E L
Sbjct: 153 LAQ-----VRPEEAVMVDD-RLQNVQAARAVGMHAVQCVDAAQLREEL 194
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin,
four-helix bundle, structural genomics, NPPSFA; 2.20A
{Pyrococcus horikoshii OT3}
Length = 235
Score = 26.4 bits (56), Expect = 7.7
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 222 IGDGMDTDIKGALQSGIDALYVSDGIHRHEYLFNDNIDAQMLQNF 266
IGD D +GA + G+ A++++ + L + + N
Sbjct: 181 IGDTYAEDYQGARKVGMWAVWINQEGDKVRKLEERGFEIPSIANL 225
>1x42_A Hypothetical protein PH0459; haloacid dehalogenase, structural
genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
SCOP: c.108.1.1
Length = 232
Score = 26.3 bits (56), Expect = 7.8
Identities = 18/164 (10%), Positives = 49/164 (29%), Gaps = 1/164 (0%)
Query: 92 VEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTGLYDDEKDKTEDYRMLLERFAH 151
E+ + + P R +E+ ++ + E++ ++ + Y L
Sbjct: 49 TREAFSNYAGKPYRPIRDIEEEVMRKLAEKYGFKY-PENFWEIHLRMHQRYGELYPEVVE 107
Query: 152 RHIPLICANPDIVANRGNKIIPCAGALALIYQQLNGIVKMIGKPHLPIYEMAFKKISSLC 211
L + + A AL + L + + +++
Sbjct: 108 VLKSLKGKYHVGMITDSDTEYLMAHLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKK 167
Query: 212 NSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYLFN 255
+ + +GD D G+ G+ ++ + + E+
Sbjct: 168 AGVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDK 211
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 26.4 bits (57), Expect = 8.2
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 42 EARENGLKVILFTNSPRP-SASVISQ--IQSLGSSSQ-----------FWDDIITSGD 85
A ++G KVIL P + ++ + + + Q ++D + G
Sbjct: 144 SATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQ 201
>3go9_A Insulinase family protease; IDP00573, structural genomics, center
for structural genomics of infectious diseases, csgid,
hydrolase; HET: MSE; 1.62A {Yersinia pestis}
Length = 492
Score = 26.2 bits (56), Expect = 8.6
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 38 PALKEAR-ENGLKVILFTNSPRPSASV 63
PA ++ + +NG L RPS +
Sbjct: 24 PAWQQGKLDNGFSWQLLATPQRPSDRI 50
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase,
nucleotide-binding, transferase, ATP-binding,
multifunctional enzyme; 1.95A {Corynebacterium
ammoniagenes}
Length = 338
Score = 26.2 bits (57), Expect = 9.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 39 ALKEARENGLKVILFTNSPRP 59
+++ARE G K I+ T P P
Sbjct: 38 TVEKAREVGAKAIMVTFDPHP 58
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.75A {Silicibacter pomeroyi dss-3}
Length = 344
Score = 25.9 bits (56), Expect = 9.5
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 22 VWGVLHNGQKFLPGTIPALKEARENGLKVILFTNSP 57
V +G+ + + A +G + TN
Sbjct: 95 CLAVSQSGKSP--DIVAMTRNAGRDGALCVALTNDA 128
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola
phosphate phosphatase, bifunctional enzyme., structural
genomics; 1.70A {Escherichia coli O157} SCOP: c.108.1.19
PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Length = 176
Score = 26.0 bits (56), Expect = 9.6
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 211 CNSFNKKRILAIGDGMDTDIKGALQSGIDALYVSDGIHRHEYLFNDNIDAQMLQNFFTKK 270
+ ++ IGD TDI+ A GI+ L + ++ M+ T++
Sbjct: 128 EQAMDRANSYVIGD-RATDIQLAENMGINGLRYD----------RETLNWPMIGEQLTRR 176
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A
{Bacillus}
Length = 345
Score = 25.8 bits (56), Expect = 10.0
Identities = 12/111 (10%), Positives = 38/111 (34%), Gaps = 9/111 (8%)
Query: 25 VLHNGQKFLPGTIPALKE----ARENGLKVILFTNSPRPSASVISQIQSLGSSSQFWDDI 80
VL +G ++ I ++E A +N + ++ + S +++ +W ++
Sbjct: 74 VLSDGGQWEKDDIDTVREVIELAEQNKMVAVVEVHDATGRDSRSDLDRAV----DYWIEM 129
Query: 81 ITS-GDLTHHLLVEESHNIFFIGPQRDYALLEKLNIKIVNEQHAETILCTG 130
+ +++ ++ + +A I + + L
Sbjct: 130 KDALIGKEDTVIINIANEWYGSWDGAAWADGYIDVIPKLRDAGLTHTLMVD 180
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.140 0.425
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,562,063
Number of extensions: 118159
Number of successful extensions: 569
Number of sequences better than 10.0: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 97
Length of query: 282
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 191
Effective length of database: 3,487,026
Effective search space: 666021966
Effective search space used: 666021966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.0 bits)