RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780848|ref|YP_003065261.1| co-chaperonin GroES
[Candidatus Liberibacter asiaticus str. psy62]
         (111 letters)



>gnl|CDD|178988 PRK00364, groES, co-chaperonin GroES; Reviewed.
          Length = 95

 Score =  108 bits (272), Expect = 4e-25
 Identities = 48/96 (50%), Positives = 69/96 (71%), Gaps = 4/96 (4%)

Query: 9   LRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEV 68
           L+P   RV+V+RL+ E KTA G I++PD+  EKP    GE++ VG G    +G+ +  +V
Sbjct: 3   LKPLGDRVLVKRLEEEEKTAGG-IVLPDSAKEKPQ--EGEVVAVGPGRRLDNGERVPLDV 59

Query: 69  SKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIV 104
             GD VLFGK++GTE+K+ DGEEYL+++ESDI+ IV
Sbjct: 60  KVGDKVLFGKYAGTEVKI-DGEEYLILRESDILAIV 94


>gnl|CDD|173604 PTZ00414, PTZ00414, 10 kDa heat shock protein; Provisional.
          Length = 100

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 9/96 (9%)

Query: 9   LRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEV 68
           L+P   RV+V+R  +  +T  G +LIP+ V+ K   + G ++ V A   D +     P V
Sbjct: 12  LQPLGQRVLVKRTLAAKQTKAG-VLIPEQVAGK--VNEGTVVAVAAATKDWT-----PTV 63

Query: 69  SKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIV 104
             GD VL  ++ G+ +K+ +GEE+ +  E  ++G++
Sbjct: 64  KVGDTVLLPEFGGSSVKV-EGEEFFLYNEDSLLGVL 98


>gnl|CDD|184730 PRK14533, groES, co-chaperonin GroES; Provisional.
          Length = 91

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 31/98 (31%), Positives = 60/98 (61%), Gaps = 9/98 (9%)

Query: 9   LRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEV 68
           + P   R++++ ++ E KT  G I++PD+  EKP  +  E++ VG     +     + ++
Sbjct: 3   VIPLGERLLIKPIKEEKKTE-GGIVLPDSAKEKPMKA--EVVAVG-----KLDDEEDFDI 54

Query: 69  SKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIVVE 106
             GD V+F K++GTEIK++D E+Y+++  +DI+  + E
Sbjct: 55  KVGDKVIFSKYAGTEIKIDD-EDYIIIDVNDILAKIEE 91


>gnl|CDD|162753 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase.  This model
           describes acetate-CoA ligase (EC 6.2.1.1), also called
           acetyl-CoA synthetase and acetyl-activating enzyme. It
           catalyzes the reaction ATP + acetate + CoA = AMP +
           diphosphate + acetyl-CoA and belongs to the family of
           AMP-binding enzymes described by Pfam model pfam00501.
          Length = 625

 Score = 29.1 bits (66), Expect = 0.25
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 27  TATGNILI---PDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEVSKGDIVLFGKWSG 81
           T TG I+I   P     KP +++     +   V+D+ G  +E     G +V+   W G
Sbjct: 396 TETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPG 453


>gnl|CDD|179717 PRK04027, PRK04027, 30S ribosomal protein S7P; Reviewed.
          Length = 195

 Score = 27.6 bits (62), Expect = 0.82
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 67 EVSKGDIVLFGKWSGTEIKLND 88
          E    +I LFGKW   E+++ D
Sbjct: 5  EAEPMEIKLFGKWDVEEVEVRD 26


>gnl|CDD|183984 PRK13340, PRK13340, alanine racemase; Reviewed.
          Length = 406

 Score = 26.1 bits (58), Expect = 1.9
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 66  PEVSKGD-IVLFGKWSGTEIKLNDGEEY 92
           P V  GD +VLFGK    EI +++ EE 
Sbjct: 357 PNVKPGDEVVLFGKQGNAEITVDEVEEA 384


>gnl|CDD|179489 PRK02870, PRK02870, heat shock protein HtpX; Provisional.
          Length = 336

 Score = 25.4 bits (56), Expect = 3.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 80  SGTEIKLNDGEEYLVMQESDIMGIVVE 106
           SGTE K    E  L +QE  +  +V E
Sbjct: 97  SGTEYKEITPENALSLQERQLYNVVEE 123


>gnl|CDD|162677 TIGR02061, aprA, adenosine phosphosulphate reductase, alpha
           subunit.  During dissimilatory sulfate reduction or
           sulfur oxidation, adenylylsulfate (APS) reductase
           catalyzes reversibly the two-electron reduction of APS
           to sulfite and AMP. Found in several bacterial lineages
           and in Archaeoglobales, APS reductase is a heterodimer
           composed of an alpha subunit containing a noncovalently
           bound FAD, and a beta subunit containing two [4Fe-4S]
           clusters. Described by this model is the alpha subunit
           of APS reductase, sharing common evolutionary origin
           with fumarate reductase/succinate dehydrogenase
           flavoproteins.
          Length = 614

 Score = 25.2 bits (55), Expect = 4.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 81  GTEIKLNDGEEYLVMQESDIMGIVVEE 107
           GT    N+ E+Y+    +D+MG+V E+
Sbjct: 55  GTRFGENNAEDYVRYVRTDLMGLVRED 81


>gnl|CDD|130100 TIGR01028, S7_S5_E_A, ribosomal protein
          S7(archaeal)/S5(eukaryotic).  This model describes the
          members from the eukaryotic cytosol and the Archaea of
          the family that includes ribosomal protein S7 of
          bacteria and S5 of eukaryotes. A separate model
          describes bacterial and organellar S7.
          Length = 186

 Score = 25.1 bits (55), Expect = 4.5
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 72 DIVLFGKWSGTEIKLND 88
          +I +FGKWS  ++++ D
Sbjct: 1  EIKVFGKWSTDDVEVKD 17


>gnl|CDD|180104 PRK05469, PRK05469, peptidase T; Provisional.
          Length = 408

 Score = 25.1 bits (56), Expect = 4.7
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 7/36 (19%)

Query: 58  DQSGKVIEPEVSKGDIVLFGKWSGTEIKLNDGEEYL 93
           D SGK ++P++ +        + G +I L DG E L
Sbjct: 84  DFSGKNVKPQIIEN-------YDGGDIALGDGNEVL 112


>gnl|CDD|162308 TIGR01346, isocit_lyase, isocitrate lyase.  Isocitrate lyase and
           malate synthase are the enzymes of the glyoxylate shunt,
           a pathway associated with the TCA cycle.
          Length = 527

 Score = 24.3 bits (52), Expect = 7.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)

Query: 51  WVGAGVMDQSGKVIEPEVS 69
           W GAG  DQ  K ++   S
Sbjct: 495 WSGAGYFDQLLKTVQGGNS 513


>gnl|CDD|151044 pfam10479, FSA_C, Fragile site-associated protein C-terminus.  This
           is the conserved C-terminal half of the protein KIAA1109
           which is the fragile site-associated protein FSA.
           Genome-wide-association studies showed this protein to
           linked to the susceptibility to coeliac disease. The
           protein may also be associated with polycystic kidney
           disease.
          Length = 615

 Score = 24.1 bits (52), Expect = 8.4
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 71  GDIVLFGKWSGTEIKLNDGEEYLVMQESD 99
           G  VL  +WS    KLND  E+  ++E D
Sbjct: 124 GTSVLMTRWSSPSAKLND--EWKGLKEGD 150


>gnl|CDD|185439 PTZ00091, PTZ00091, 40S ribosomal protein S5; Provisional.
          Length = 193

 Score = 24.0 bits (52), Expect = 9.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 75 LFGKWSGTEIKLND 88
          LFGKWS  +++++D
Sbjct: 8  LFGKWSYDDVQVSD 21


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.311    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0487    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,791,698
Number of extensions: 100680
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 31
Length of query: 111
Length of database: 5,994,473
Length adjustment: 77
Effective length of query: 34
Effective length of database: 4,330,657
Effective search space: 147242338
Effective search space used: 147242338
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.6 bits)