RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780848|ref|YP_003065261.1| co-chaperonin GroES
[Candidatus Liberibacter asiaticus str. psy62]
         (111 letters)



>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10,
           folding, ADP, ATP; HET: ADP; 2.80A {Thermus
           thermophilus} (O:)
          Length = 100

 Score = 94.1 bits (234), Expect = 5e-21
 Identities = 43/102 (42%), Positives = 70/102 (68%), Gaps = 4/102 (3%)

Query: 3   GEHKNYLRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGK 62
            E K  ++P   RVVV+R++ E KT  G I++PDT  EKP    G+++ VG G + ++G+
Sbjct: 2   AEVKTVIKPLGDRVVVKRIEEEPKTKGG-IVLPDTAKEKPQ--KGKVIAVGTGRVLENGQ 58

Query: 63  VIEPEVSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIV 104
            +  EV +GDIV+F K+ GTEI++ DGEEY+++ E D++ ++
Sbjct: 59  RVPLEVKEGDIVVFAKYGGTEIEI-DGEEYVILSERDLLAVL 99


>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli}
           (O:)
          Length = 97

 Score = 89.5 bits (222), Expect = 1e-19
 Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 3/96 (3%)

Query: 9   LRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEV 68
           +RP   RV+V+R + E K+A G I++  + + K +   GE++ VG G + ++G+V   +V
Sbjct: 3   IRPLHDRVIVKRKEVETKSAGG-IVLTGSAAAKST--RGEVLAVGNGRILENGEVKPLDV 59

Query: 69  SKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIV 104
             GDIV+F    G + +  D EE L+M ESDI+ IV
Sbjct: 60  KVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIV 95


>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible
           loop, structural genomics, PSI, protein structure
           initiative; 2.80A {Mycobacterium tuberculosis} (A:)
          Length = 99

 Score = 88.3 bits (219), Expect = 3e-19
 Identities = 37/99 (37%), Positives = 65/99 (65%), Gaps = 5/99 (5%)

Query: 9   LRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEP-E 67
           ++P   +++V+  ++E  TA+G ++IPDT  EKP    G ++ VG G  D+ G+   P +
Sbjct: 5   IKPLEDKILVQANEAETTTASG-LVIPDTAKEKPQ--EGTVVAVGPGRWDEDGEKRIPLD 61

Query: 68  VSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIVVE 106
           V++GD V++ K+ GTEIK  +GEEYL++   D++ +V +
Sbjct: 62  VAEGDTVIYSKYGGTEIKY-NGEEYLILSARDVLAVVSK 99


>1iqv_A Ribosomal protein S7; RNA-binding, decoding center,
          helix-turn- helix, ribosome; 2.10A {Pyrococcus
          horikoshii} (A:)
          Length = 218

 Score = 24.2 bits (52), Expect = 5.7
 Identities = 5/19 (26%), Positives = 12/19 (63%)

Query: 72 DIVLFGKWSGTEIKLNDGE 90
          +I + G+WS  ++++ D  
Sbjct: 17 EIKVMGRWSTEDVEVKDPS 35


>2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S
          ribosomal subunit, ribosomal protein/RNA complex; 8.70A
          {Canis familiaris} (g:)
          Length = 204

 Score = 24.2 bits (52), Expect = 6.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 57 MDQSGKVIEPEVSKGDIVLFGKWSGTEIKLND 88
          M +            DI LFGKWS  ++++ND
Sbjct: 1  MTEWETAAPAVAETPDIKLFGKWSTDDVQIND 32


>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A
           {Influenza a virus} (A:42-266)
          Length = 225

 Score = 23.7 bits (51), Expect = 7.8
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 10  RPTRGRV-----VVRRLQSEIKTATGNILIPDTVSEKPSASSGEIM 50
               GR+     V++  Q+    + GN++ P         S G I+
Sbjct: 173 NGLHGRIDYYWSVLKPGQTLRVRSNGNLIAPWYGHILSGESHGRIL 218


>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S
          regulator, receptor, ubiquitin-proteasome-degradation
          pathway; 1.70A {Mus musculus} PDB: 2z59_A (A:)
          Length = 153

 Score = 24.0 bits (52), Expect = 8.2
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 27 TATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEVSKGDIVLF 76
          + T   L P  V     +S+  ++   AG M   G  + P+  KG + + 
Sbjct: 4  STTSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQ 53


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.311    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0574    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 836,127
Number of extensions: 33303
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 10
Length of query: 111
Length of database: 4,956,049
Length adjustment: 66
Effective length of query: 45
Effective length of database: 2,724,919
Effective search space: 122621355
Effective search space used: 122621355
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.4 bits)