RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780848|ref|YP_003065261.1| co-chaperonin GroES [Candidatus Liberibacter asiaticus str. psy62] (111 letters) >1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} (O:) Length = 100 Score = 94.1 bits (234), Expect = 5e-21 Identities = 43/102 (42%), Positives = 70/102 (68%), Gaps = 4/102 (3%) Query: 3 GEHKNYLRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGK 62 E K ++P RVVV+R++ E KT G I++PDT EKP G+++ VG G + ++G+ Sbjct: 2 AEVKTVIKPLGDRVVVKRIEEEPKTKGG-IVLPDTAKEKPQ--KGKVIAVGTGRVLENGQ 58 Query: 63 VIEPEVSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIV 104 + EV +GDIV+F K+ GTEI++ DGEEY+++ E D++ ++ Sbjct: 59 RVPLEVKEGDIVVFAKYGGTEIEI-DGEEYVILSERDLLAVL 99 >1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} (O:) Length = 97 Score = 89.5 bits (222), Expect = 1e-19 Identities = 37/96 (38%), Positives = 59/96 (61%), Gaps = 3/96 (3%) Query: 9 LRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEV 68 +RP RV+V+R + E K+A G I++ + + K + GE++ VG G + ++G+V +V Sbjct: 3 IRPLHDRVIVKRKEVETKSAGG-IVLTGSAAAKST--RGEVLAVGNGRILENGEVKPLDV 59 Query: 69 SKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIV 104 GDIV+F G + + D EE L+M ESDI+ IV Sbjct: 60 KVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIV 95 >1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} (A:) Length = 99 Score = 88.3 bits (219), Expect = 3e-19 Identities = 37/99 (37%), Positives = 65/99 (65%), Gaps = 5/99 (5%) Query: 9 LRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEP-E 67 ++P +++V+ ++E TA+G ++IPDT EKP G ++ VG G D+ G+ P + Sbjct: 5 IKPLEDKILVQANEAETTTASG-LVIPDTAKEKPQ--EGTVVAVGPGRWDEDGEKRIPLD 61 Query: 68 VSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIVVE 106 V++GD V++ K+ GTEIK +GEEYL++ D++ +V + Sbjct: 62 VAEGDTVIYSKYGGTEIKY-NGEEYLILSARDVLAVVSK 99 >1iqv_A Ribosomal protein S7; RNA-binding, decoding center, helix-turn- helix, ribosome; 2.10A {Pyrococcus horikoshii} (A:) Length = 218 Score = 24.2 bits (52), Expect = 5.7 Identities = 5/19 (26%), Positives = 12/19 (63%) Query: 72 DIVLFGKWSGTEIKLNDGE 90 +I + G+WS ++++ D Sbjct: 17 EIKVMGRWSTEDVEVKDPS 35 >2zkq_g 40S ribosomal protein S5E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (g:) Length = 204 Score = 24.2 bits (52), Expect = 6.8 Identities = 11/32 (34%), Positives = 16/32 (50%) Query: 57 MDQSGKVIEPEVSKGDIVLFGKWSGTEIKLND 88 M + DI LFGKWS ++++ND Sbjct: 1 MTEWETAAPAVAETPDIKLFGKWSTDDVQIND 32 >1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} (A:42-266) Length = 225 Score = 23.7 bits (51), Expect = 7.8 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 5/46 (10%) Query: 10 RPTRGRV-----VVRRLQSEIKTATGNILIPDTVSEKPSASSGEIM 50 GR+ V++ Q+ + GN++ P S G I+ Sbjct: 173 NGLHGRIDYYWSVLKPGQTLRVRSNGNLIAPWYGHILSGESHGRIL 218 >2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, ubiquitin-proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A (A:) Length = 153 Score = 24.0 bits (52), Expect = 8.2 Identities = 12/50 (24%), Positives = 21/50 (42%) Query: 27 TATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPEVSKGDIVLF 76 + T L P V +S+ ++ AG M G + P+ KG + + Sbjct: 4 STTSGALFPSLVPGSRGSSTKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQ 53 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.311 0.132 0.371 Gapped Lambda K H 0.267 0.0574 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 836,127 Number of extensions: 33303 Number of successful extensions: 78 Number of sequences better than 10.0: 1 Number of HSP's gapped: 69 Number of HSP's successfully gapped: 10 Length of query: 111 Length of database: 4,956,049 Length adjustment: 66 Effective length of query: 45 Effective length of database: 2,724,919 Effective search space: 122621355 Effective search space used: 122621355 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 50 (23.4 bits)