BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780848|ref|YP_003065261.1| co-chaperonin GroES
[Candidatus Liberibacter asiaticus str. psy62]
         (111 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780848|ref|YP_003065261.1| co-chaperonin GroES [Candidatus Liberibacter asiaticus str. psy62]
          Length = 111

 Score =  222 bits (566), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   MVGEHKNYLRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQS 60
           MVGEHKNYLRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQS
Sbjct: 1   MVGEHKNYLRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQS 60

Query: 61  GKVIEPEVSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIVVEEKKNK 111
           GKVIEPEVSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIVVEEKKNK
Sbjct: 61  GKVIEPEVSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGIVVEEKKNK 111


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 27.3 bits (59), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 41  KPSASSGEIMWVGAGVMDQSGKVIEPE 67
           KPS + GE+  +GA  +D+  K IE +
Sbjct: 300 KPSLARGELHCIGATTLDEYRKYIEKD 326


>gi|254781052|ref|YP_003065465.1| dihydrolipoamide succinyltransferase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 436

 Score = 26.2 bits (56), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 60  SGKVIEPEVSKGDIVLFGKWSGTEIKLNDGEEYLVMQES 98
           SGK+ E  V+KGD V +G + G  +++   E+  + Q S
Sbjct: 71  SGKLHEMSVAKGDTVTYGGFLGYIVEIARDEDESIKQNS 109


>gi|254780468|ref|YP_003064881.1| sensory box/GGDEF family protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 963

 Score = 25.4 bits (54), Expect = 0.29,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 64  IEP-EVSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGI 103
           IEP  +S  D VL    S T I +N GE++ V   +DI GI
Sbjct: 32  IEPINISSSDRVL-DLTSITRIYVNQGEDFQVFTAADIDGI 71


>gi|254780968|ref|YP_003065381.1| hypothetical protein CLIBASIA_04345 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 106

 Score = 22.3 bits (46), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 63  VIEPEVSKGDIVLFGKWSGTEIKLNDGEEYLVMQESDIMGI 103
           +I+ E+ K D+VLF K  GT      G    V+Q  D +G+
Sbjct: 8   IIQNEIKKNDVVLFMK--GTPTSPRCGFSGKVVQVLDSLGV 46


>gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 21.9 bits (45), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 16/79 (20%), Positives = 31/79 (39%)

Query: 8   YLRPTRGRVVVRRLQSEIKTATGNILIPDTVSEKPSASSGEIMWVGAGVMDQSGKVIEPE 67
           +L   +GR +VR      K + G+I+  D ++     S     ++ A    +    +  E
Sbjct: 252 FLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASATQEHTMAVSAE 311

Query: 68  VSKGDIVLFGKWSGTEIKL 86
            ++    + GK     I L
Sbjct: 312 NARKRWRIMGKTDSYYITL 330


>gi|254781094|ref|YP_003065507.1| glycyl-tRNA synthetase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 702

 Score = 20.8 bits (42), Expect = 6.0,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 89  GEEYLVMQESDIMGIVVEEKKNK 111
           GE++L+  +     + +EEKKN+
Sbjct: 586 GEKFLLSAKRIFQILAIEEKKNR 608


>gi|254780688|ref|YP_003065101.1| putative flagellar motor switch protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 147

 Score = 20.8 bits (42), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 9/56 (16%)

Query: 50  MWVGAGVMDQSGKVIEPEVSKGDIVLFGKWSG--TEIKLNDGE----EYLVMQESD 99
           + +G+  M  S  V    +SKGD++   K  G   +I +N+ +    E  +M+E D
Sbjct: 81  IILGSCCMQISNLV---NLSKGDVITLDKRVGESVDITINNQKIAKGEITIMEEDD 133


>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 833

 Score = 20.4 bits (41), Expect = 9.0,   Method: Composition-based stats.
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 87  NDGEEYLVMQESDIMGI 103
           +DG +YLV  + +I GI
Sbjct: 236 SDGNQYLVEDKVEISGI 252


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.311    0.132    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,813
Number of Sequences: 1233
Number of extensions: 2816
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 111
length of database: 328,796
effective HSP length: 63
effective length of query: 48
effective length of database: 251,117
effective search space: 12053616
effective search space used: 12053616
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 32 (16.9 bits)