>TIGR02348 GroEL chaperonin GroL; InterPro: IPR012723 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called Anfinsen cage provided by the GroELGroES complex, where they can fold in isolation from one another . GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. This family consists of GroEL, found in bacteria, organelles derived from bacteria, and occasionally in archaeal species. The bacterial GroEL/GroES group I chaperonin is replaced by a group II chaperonin, usually called the thermosome in archaeal species, and CCT (chaperone-containing TCP) in eukaryotes. GroEL, thermosome subunits, and CCT subunits all fall under the scope of IPR002423 from INTERPRO.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.

Probab=100.00 E-value=0 Score=991.44 Aligned_cols=525 Identities=60% Similarity=0.902 Sum_probs=517.3 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 66343798999999999999999977367898635988858998388320888777603478522578899999998662 Q gi|254780849|r 3 AKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82 (551) Q Consensus 3 ~~~~~~g~~a~~~~~~~~~~ia~~i~ttlGP~G~~kmi~~~~g~~~iTnDGaTIlk~l~~~hp~~~~~akll~~~a~~qd 82 (551) T Consensus 1 AK~i~F~~eAR~~L~~GV~~LA~AVkvTLGPKGRNVvl~K~fGaP~itkDGVtvAKEIEL~d~fENmGA~Lv~EVA~KT~ 80 (528) T TIGR02348 1 AKQIKFDEEARKALERGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTN 80 (528) T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCCCEEEEECCCCCCEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHHCC T ss_conf 97444218899999987888750013244897335786232488824737842787763388720124899999996246 Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 55188666799999999999999997698899999989864477776765322212760242221225553345688899 Q gi|254780849|r 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKI 162 (551) Q Consensus 83 ~~~GDGTTtvvvLa~eLL~~a~~Li~~gihP~~Ii~G~~~a~~~al~~L~~~s~~i~~~~~L~~vA~tS~~~~~~l~~li 162 (551) T Consensus 81 D~AGDGTTTATVLA~ai~~eGLK~vaAGaNP~~lKrGIekAv~~~v~~L~~~s~~v~~~~~i~~VA~iSAnnD~eIG~lI 160 (528) T TIGR02348 81 DVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAVVEELKKLSKKVKGKEEIAQVATISANNDEEIGSLI 160 (528) T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHH T ss_conf 77888426899999999852520265377566654328999999999998607667867777655322017834689999 Q ss_pred HHHHHHCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHH Q ss_conf 99998424320001101465520333302320011224765423310134441131022013564410011146775311 Q gi|254780849|r 163 AYAMEQIGPHGIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESATQ 242 (551) Q Consensus 163 ~~A~~~i~~d~vi~i~~~~~~~~d~~li~G~~id~g~~~~~fi~~~~~~~~~~~n~~Ili~d~~Le~~~~~~~~le~~~~ 242 (551) T Consensus 161 A~AM~kVG~dGVITVEE~k~~~T~le~veGMqFDrGY~SPYfvTd~e~m~~~LenP~ILi~DKKiS~~kdllP~LE~v~~ 240 (528) T TIGR02348 161 AEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNVKDLLPLLEKVVQ 240 (528) T ss_pred HHHHHHHCCCCEEECCCCCCCCEEEEEEECEECCCCCCCCCEEECCCCEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHH T ss_conf 99999727896285026877211440230500256755763151786318986486066410116446544378899996 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCEEE Q ss_conf 16212222233358888653121356832322221230567669988652110112332101063221122222441027 Q gi|254780849|r 243 SGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVISEEIGLKLEKATIADLGSAKK 322 (551) Q Consensus 243 ~~~~l~ii~~~~e~~~l~~lv~n~~k~gi~v~~vk~~~~~~~~~~~L~dia~~tGa~vi~~~~~~~l~~~~~~~LG~~~~ 322 (551) T Consensus 241 ~G~PLLIIAEDveGEALaTLVvNklRG~l~v~AVKAPGFGdRRKamLeDIAiLTGG~vISEe~G~~LE~~~~~~LG~A~~ 320 (528) T TIGR02348 241 SGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKK 320 (528) T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCCHHHCCCCEE T ss_conf 18981798514563589999998416625799984599765789988323303188588730055112457624787005 Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 89804673013774217777654334677654135631111012221023344321256765314689898877889999 Q gi|254780849|r 323 VVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDA 402 (551) Q Consensus 323 v~i~~~~~~ii~~~~~~~~i~~~i~~l~~~ie~~~~~~~~~~~~er~~~l~g~~~tI~vgg~t~~~~~E~~r~~~DAl~v 402 (551) T Consensus 321 v~v~Kd~TtIv~g~G~~~~i~~Rv~qIk~qi~~t~SdYDrEKL~ERLAKL~GGVAVIkVGAaTEtElKekK~RvEDAL~A 400 (528) T TIGR02348 321 VTVDKDNTTIVEGAGKKEAIKARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATETELKEKKLRVEDALNA 400 (528) T ss_pred EEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEEEECCCCCHHHHCCCCCHHHHHHH T ss_conf 89860634798789998899999999999986204620067899887876098589972674304331257736777898 Q ss_pred HHHHCCCCCCCCCCHHHHHHHHHHHH-CC-CCH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEE Q ss_conf 87540278105553799999999745-08-996-8999999999999999999999779998999999981689866588 Q gi|254780849|r 403 TRAASDEGIVPGGGIALVRAAQALSV-KG-DNE-DQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYN 479 (551) Q Consensus 403 ~~~~~~~~vvpGGGa~e~~ls~~l~~-~~-~~~-~~~~~i~~fa~AL~~ip~~La~NaG~d~~~~i~~l~~~~~~~~G~d 479 (551) T Consensus 401 TrAAvEEGiVpGGG~aL~~~~~~l~~~~~~~~~~D~~~G~~Iv~~A~~aP~rqIA~NaG~~G~Vv~e~v~~~~~~~~Gfn 480 (528) T TIGR02348 401 TRAAVEEGIVPGGGVALLRAAAALEGSLKEDSEGDEKIGVKIVKRALEAPLRQIAENAGKDGAVVVEKVKESKDENFGFN 480 (528) T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCC T ss_conf 88887447546647899999999999986126445788799999998735899998548886799999982378874754 Q ss_pred CCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 668727213883983704789999999999999866099997158778 Q gi|254780849|r 480 AQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKD 527 (551) Q Consensus 480 ~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iLriD~iI~~~~~~ 527 (551) T Consensus 481 A~~~~y~dl~~aGiIDP~KVtR~AL~NAASiAgllLTTEa~vad~pe~ 528 (528) T TIGR02348 481 AATGEYEDLVEAGIIDPAKVTRSALQNAASIAGLLLTTEAVVADKPEE 528 (528) T ss_pred CCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCC T ss_conf 666517879764874761677777765799999987553021148899

HHsearch alignment for GI: 254780849 and conserved domain: TIGR02348