HHsearch alignment for GI: 254780849 and conserved domain: cd00309

>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00  E-value=0  Score=738.57  Aligned_cols=443  Identities=36%  Similarity=0.543  Sum_probs=392.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             63437989999999999999999773678986359888589983883208887776034785225788999999986625
Q gi|254780849|r    4 KDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTED   83 (551)
Q Consensus         4 ~~~~~g~~a~~~~~~~~~~ia~~i~ttlGP~G~~kmi~~~~g~~~iTnDGaTIlk~l~~~hp~~~~~akll~~~a~~qd~   83 (551)
T Consensus         1 ~~~~~~~~a~~~~i~a~~~l~~~~~ttlGP~G~~kmI~~~~g~~~iTnDG~tIlk~i~~~hp----~a~ll~~~a~~q~~   76 (464)
T cd00309           1 KEREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHP----AAKLLVEVAKSQDD   76 (464)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCHHHHHHHCCCCCH----HHHHHHHHHHHHHH
T ss_conf             97533599999999999999998746739888748998799984896769999986426397----99999999998777


Q ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH------HH
Q ss_conf             5188666799999999999999997698899999989864477776765322212--760242221225553------34
Q gi|254780849|r   84 SSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKV--GSREEIIQVATISAN------GD  155 (551)
Q Consensus        84 ~~GDGTTtvvvLa~eLL~~a~~Li~~gihP~~Ii~G~~~a~~~al~~L~~~s~~i--~~~~~L~~vA~tS~~------~~  155 (551)
T Consensus        77 ~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~l~~va~tsl~sK~~~~~~  156 (464)
T cd00309          77 EVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGD  156 (464)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCH
T ss_conf             72787244999999999987553007998899999999999999999998551277899999999999984246553233


Q ss_pred             HHHHHHHHHHHHHCCCC------CHHHHC-CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCC
Q ss_conf             56888999999842432------000110-14655203333023200112247654233101344411310220135644
Q gi|254780849|r  156 REIGEKIAYAMEQIGPH------GIITID-QAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKIS  228 (551)
Q Consensus       156 ~~l~~li~~A~~~i~~d------~vi~i~-~~~~~~~d~~li~G~~id~g~~~~~fi~~~~~~~~~~~n~~Ili~d~~Le  228 (551)
T Consensus       157 ~~l~~li~~A~~~v~~~~~~~~~~~I~I~k~~ggs~~~s~li~G~~~~~~~~~~~-------~~~~~~n~~Ili~~~~Le  229 (464)
T cd00309         157 DFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPY-------MPKRLENAKILLLDCKLE  229 (464)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEECCEEEECCCCCCC-------CCCCCCCCEEEEECCCCC
T ss_conf             8999999999998545667777770899975788701115544789813667898-------720504617999868843


Q ss_pred             CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
Q ss_conf             10011146775311162122222333588886531213568323222212305676699886521101123321010632
Q gi|254780849|r  229 ALQPLLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVISEEIGLK  308 (551)
Q Consensus       229 ~~~~~~~~le~~~~~~~~l~ii~~~~e~~~l~~lv~n~~k~gi~v~~vk~~~~~~~~~~~L~dia~~tGa~vi~~~~~~~  308 (551)
T Consensus       230 ~-----------------lIi~~~~I~~~al~~l~~~------~I~av~~-----~~~~~l~~ia~~tGa~~i~-----~  276 (464)
T cd00309         230 Y-----------------VVIAEKGIDDEALHYLAKL------GIMAVRR-----VRKEDLERIAKATGATIVS-----R  276 (464)
T ss_pred             E-----------------EEEECCCCCHHHHHHHHHC------CCEEEEE-----CCHHHHHHHHHHHCCEEEC-----C
T ss_conf             7-----------------9998888778999999985------9669980-----4587899999984999965-----5


Q ss_pred             CCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf             21122222441027898046730137742177776543346776541356311110122210233443212567653146
Q gi|254780849|r  309 LEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAA  388 (551)
Q Consensus       309 l~~~~~~~LG~~~~v~i~~~~~~ii~~~~~~~~i~~~i~~l~~~ie~~~~~~~~~~~~er~~~l~g~~~tI~vgg~t~~~  388 (551)
T Consensus       277 ~~~~~~~~lG~~~~v~~~~~~~------------------------------~~~~~i~~~--~~~~~~tI~vrG~t~~~  324 (464)
T cd00309         277 LEDLTPEDLGTAGLVEETKIGD------------------------------EKYTFIEGC--KGGKVATILLRGATEVE  324 (464)
T ss_pred             CCCCCHHHHCCCCEEEEEEECC------------------------------CEEEEEECC--CCCCEEEEEECCCCHHH
T ss_conf             0229988824151589998478------------------------------208999747--89966999967898778


Q ss_pred             HHHHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             898988778899998754027-8105553799999999745089--9689999999999999999999997799989999
Q gi|254780849|r  389 LGEKKDRYQDSLDATRAASDE-GIVPGGGIALVRAAQALSVKGD--NEDQCAGIEIVRKALSYPCRQIIKNAGDESELIV  465 (551)
Q Consensus       389 ~~E~~r~~~DAl~v~~~~~~~-~vvpGGGa~e~~ls~~l~~~~~--~~~~~~~i~~fa~AL~~ip~~La~NaG~d~~~~i  465 (551)
T Consensus       325 ~~E~~r~i~DAl~~~k~~~~~~~ivpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~~~  404 (464)
T cd00309         325 LDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVV  404 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             99999999999999999973788502752999999999986531478389999999999999999999998799889999


Q ss_pred             HHHHHCCC---CCEEEECCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99981689---8665886687272138839837047899999999999998660999971
Q gi|254780849|r  466 SKIQESKT---ANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVV  522 (551)
Q Consensus       466 ~~l~~~~~---~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iLriD~iI~  522 (551)
T Consensus       405 ~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~  464 (464)
T cd00309         405 TKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV  464 (464)
T ss_pred             HHHHHHHHCCCCCEEEECCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEC
T ss_conf             999988635798777976789070577574861799999999989999999985201619