HHsearch alignment for GI: 254780849 and conserved domain: cd00309
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=0 Score=738.57 Aligned_cols=443 Identities=36% Similarity=0.543 Sum_probs=392.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 63437989999999999999999773678986359888589983883208887776034785225788999999986625
Q gi|254780849|r 4 KDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTED 83 (551)
Q Consensus 4 ~~~~~g~~a~~~~~~~~~~ia~~i~ttlGP~G~~kmi~~~~g~~~iTnDGaTIlk~l~~~hp~~~~~akll~~~a~~qd~ 83 (551)
T Consensus 1 ~~~~~~~~a~~~~i~a~~~l~~~~~ttlGP~G~~kmI~~~~g~~~iTnDG~tIlk~i~~~hp----~a~ll~~~a~~q~~ 76 (464)
T cd00309 1 KEREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHP----AAKLLVEVAKSQDD 76 (464)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCHHHHHHHCCCCCH----HHHHHHHHHHHHHH
T ss_conf 97533599999999999999998746739888748998799984896769999986426397----99999999998777
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH------HH
Q ss_conf 5188666799999999999999997698899999989864477776765322212--760242221225553------34
Q gi|254780849|r 84 SSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKV--GSREEIIQVATISAN------GD 155 (551)
Q Consensus 84 ~~GDGTTtvvvLa~eLL~~a~~Li~~gihP~~Ii~G~~~a~~~al~~L~~~s~~i--~~~~~L~~vA~tS~~------~~ 155 (551)
T Consensus 77 ~~GDGTTt~vvLa~~Ll~~~~~li~~g~~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~l~~va~tsl~sK~~~~~~ 156 (464)
T cd00309 77 EVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGD 156 (464)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCH
T ss_conf 72787244999999999987553007998899999999999999999998551277899999999999984246553233
Q ss_pred HHHHHHHHHHHHHCCCC------CHHHHC-CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCC
Q ss_conf 56888999999842432------000110-14655203333023200112247654233101344411310220135644
Q gi|254780849|r 156 REIGEKIAYAMEQIGPH------GIITID-QAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKIS 228 (551)
Q Consensus 156 ~~l~~li~~A~~~i~~d------~vi~i~-~~~~~~~d~~li~G~~id~g~~~~~fi~~~~~~~~~~~n~~Ili~d~~Le 228 (551)
T Consensus 157 ~~l~~li~~A~~~v~~~~~~~~~~~I~I~k~~ggs~~~s~li~G~~~~~~~~~~~-------~~~~~~n~~Ili~~~~Le 229 (464)
T cd00309 157 DFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPY-------MPKRLENAKILLLDCKLE 229 (464)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCEEEECCEEEECCCCCCC-------CCCCCCCCEEEEECCCCC
T ss_conf 8999999999998545667777770899975788701115544789813667898-------720504617999868843
Q ss_pred CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
Q ss_conf 10011146775311162122222333588886531213568323222212305676699886521101123321010632
Q gi|254780849|r 229 ALQPLLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVISEEIGLK 308 (551)
Q Consensus 229 ~~~~~~~~le~~~~~~~~l~ii~~~~e~~~l~~lv~n~~k~gi~v~~vk~~~~~~~~~~~L~dia~~tGa~vi~~~~~~~ 308 (551)
T Consensus 230 ~-----------------lIi~~~~I~~~al~~l~~~------~I~av~~-----~~~~~l~~ia~~tGa~~i~-----~ 276 (464)
T cd00309 230 Y-----------------VVIAEKGIDDEALHYLAKL------GIMAVRR-----VRKEDLERIAKATGATIVS-----R 276 (464)
T ss_pred E-----------------EEEECCCCCHHHHHHHHHC------CCEEEEE-----CCHHHHHHHHHHHCCEEEC-----C
T ss_conf 7-----------------9998888778999999985------9669980-----4587899999984999965-----5
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 21122222441027898046730137742177776543346776541356311110122210233443212567653146
Q gi|254780849|r 309 LEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAA 388 (551)
Q Consensus 309 l~~~~~~~LG~~~~v~i~~~~~~ii~~~~~~~~i~~~i~~l~~~ie~~~~~~~~~~~~er~~~l~g~~~tI~vgg~t~~~ 388 (551)
T Consensus 277 ~~~~~~~~lG~~~~v~~~~~~~------------------------------~~~~~i~~~--~~~~~~tI~vrG~t~~~ 324 (464)
T cd00309 277 LEDLTPEDLGTAGLVEETKIGD------------------------------EKYTFIEGC--KGGKVATILLRGATEVE 324 (464)
T ss_pred CCCCCHHHHCCCCEEEEEEECC------------------------------CEEEEEECC--CCCCEEEEEECCCCHHH
T ss_conf 0229988824151589998478------------------------------208999747--89966999967898778
Q ss_pred HHHHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 898988778899998754027-8105553799999999745089--9689999999999999999999997799989999
Q gi|254780849|r 389 LGEKKDRYQDSLDATRAASDE-GIVPGGGIALVRAAQALSVKGD--NEDQCAGIEIVRKALSYPCRQIIKNAGDESELIV 465 (551)
Q Consensus 389 ~~E~~r~~~DAl~v~~~~~~~-~vvpGGGa~e~~ls~~l~~~~~--~~~~~~~i~~fa~AL~~ip~~La~NaG~d~~~~i 465 (551)
T Consensus 325 ~~E~~r~i~DAl~~~k~~~~~~~ivpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~AL~~ip~~La~NaG~d~~~~~ 404 (464)
T cd00309 325 LDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVV 404 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999999999973788502752999999999986531478389999999999999999999998799889999
Q ss_pred HHHHHCCC---CCEEEECCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99981689---8665886687272138839837047899999999999998660999971
Q gi|254780849|r 466 SKIQESKT---ANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVV 522 (551)
Q Consensus 466 ~~l~~~~~---~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iLriD~iI~ 522 (551)
T Consensus 405 ~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~iD~iI~ 464 (464)
T cd00309 405 TKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred HHHHHHHHCCCCCEEEECCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEC
T ss_conf 999988635798777976789070577574861799999999989999999985201619