HHsearch alignment for GI: 254780849 and conserved domain: cd03339
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=0 Score=745.29 Aligned_cols=470 Identities=21% Similarity=0.265 Sum_probs=381.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 34379899999999999999997736789863598885899838832088877760347852257889999999866255
Q gi|254780849|r 5 DIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTEDS 84 (551)
Q Consensus 5 ~~~~g~~a~~~~~~~~~~ia~~i~ttlGP~G~~kmi~~~~g~~~iTnDGaTIlk~l~~~hp~~~~~akll~~~a~~qd~~ 84 (551)
T Consensus 17 ~~~~G~~a~~~ni~a~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~l~hP----~Akll~~~a~~q~~~ 92 (526)
T cd03339 17 KRLKGLEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQ----IAKLLVELSKSQDDE 92 (526)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCHHHHHHHCCCCCH----HHHHHHHHHHHHHHH
T ss_conf 1047399999999999999999757748887838998899995797678999887448698----999999999964646
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHH-----
Q ss_conf 18866679999999999999999769889999998986447777676532221276----024222122555334-----
Q gi|254780849|r 85 SGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVGS----REEIIQVATISANGD----- 155 (551)
Q Consensus 85 ~GDGTTtvvvLa~eLL~~a~~Li~~gihP~~Ii~G~~~a~~~al~~L~~~s~~i~~----~~~L~~vA~tS~~~~----- 155 (551)
T Consensus 93 ~GDGTTt~vvLa~eLl~~~~~ll~~g~hp~~I~~G~~~a~~~~~~~L~~~a~~v~~~~~~~~~l~~va~tsl~sK~~~~~ 172 (526)
T cd03339 93 IGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRC 172 (526)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 46877899999999999999999769987999999999999999999983676789765699999999987400465889
Q ss_pred -HHHHHHHHHHHHHCCC--------CCHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCC
Q ss_conf -5688899999984243--------2000110146552033330232001122476542331013444113102201356
Q gi|254780849|r 156 -REIGEKIAYAMEQIGP--------HGIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKK 226 (551)
Q Consensus 156 -~~l~~li~~A~~~i~~--------d~vi~i~~~~~~~~d~~li~G~~id~g~~~~~fi~~~~~~~~~~~n~~Ili~d~~ 226 (551)
T Consensus 173 ~~~l~~l~~dav~~v~~~~~~~~~~~~I~i~~~~Gg~~~ds~lv~Giv~~~~~~~~-------~m~~~~~n~ki~ll~~~ 245 (526)
T cd03339 173 HRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHP-------QMPKEVKDAKIAILTCP 245 (526)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCEEEECCEEECCCCCCC-------CCCCCCCCCEEHHHCCC
T ss_conf 99999999999976532357766530279997058740000677463543678898-------65443234601021476
Q ss_pred CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCC---------------HHHHHHHHHHHH
Q ss_conf 44100111467753111621222223335888865312135683232222123---------------056766998865
Q gi|254780849|r 227 ISALQPLLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAP---------------AFGDRRKEVLRD 291 (551)
Q Consensus 227 Le~~~~~~~~le~~~~~~~~l~ii~~~~e~~~l~~lv~n~~k~gi~v~~vk~~---------------~~~~~~~~~L~d 291 (551)
T Consensus 246 le~~k~~~~~~i~i~~~~~~~~~--~~~e~~~~~~~v~~i~~~g~~lvi~~~~I~d~a~~~l~~~~I~av~~v~~~dle~ 323 (526)
T cd03339 246 FEPPKPKTKHKLDITSVEDYKKL--QEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIEL 323 (526)
T ss_pred CCHHHHHCCCEEEECCHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCCEECCCCHHHHHH
T ss_conf 30202211441685379999999--9999999999999987529982433335463889999876986431467877999
Q ss_pred HHHHCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHC
Q ss_conf 21101123321010632211222224410278980467301377421777765433467765413563111101222102
Q gi|254780849|r 292 IAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAK 371 (551)
Q Consensus 292 ia~~tGa~vi~~~~~~~l~~~~~~~LG~~~~v~i~~~~~~ii~~~~~~~~i~~~i~~l~~~ie~~~~~~~~~~~~er~~~ 371 (551)
T Consensus 324 ia~~tGa~~i~-----~~~~l~~~~lG~a~~v~~~~~g~-----~-----------------------~d~~~~i~~~-~ 369 (526)
T cd03339 324 IAIATGGRIVP-----RFEDLSPEKLGKAGLVREISFGT-----T-----------------------KDKMLVIEGC-P 369 (526)
T ss_pred HHHHCCCEEEC-----CCCCCCHHHCCCCCEEEEEEECC-----C-----------------------CCEEEEEECC-C
T ss_conf 99980998856-----62429987878674699998536-----6-----------------------6249999658-8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 334432125676531468989887788999987540278-105553799999999745089--96899999999999999
Q gi|254780849|r 372 LAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEG-IVPGGGIALVRAAQALSVKGD--NEDQCAGIEIVRKALSY 448 (551)
Q Consensus 372 l~g~~~tI~vgg~t~~~~~E~~r~~~DAl~v~~~~~~~~-vvpGGGa~e~~ls~~l~~~~~--~~~~~~~i~~fa~AL~~ 448 (551)
T Consensus 370 -~~~~~TI~vrG~t~~~~~E~~r~l~DAl~~~k~ai~~~~iVpGGGa~el~ls~~L~~~~~~~~~~eq~~i~~~a~ALe~ 448 (526)
T cd03339 370 -NSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALES 448 (526)
T ss_pred -CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf -8760699995670999999996047799999999827986556769999999999997532880899999999999999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHCC----CCCEEEECCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999977999899999998168----98665886687272138839837047899999999999998660999971
Q gi|254780849|r 449 PCRQIIKNAGDESELIVSKIQESK----TANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVV 522 (551)
Q Consensus 449 ip~~La~NaG~d~~~~i~~l~~~~----~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iLriD~iI~ 522 (551)
T Consensus 449 ip~~La~NaG~d~~~~l~~l~~~~~~~~~~~~Gid~~~g~~~Dm~~~gIidP~~vk~~al~~A~e~A~~iLriD~iIv 526 (526)
T cd03339 449 IPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEC
T ss_conf 999999976997787799999999835899776977899360467566843699999999989999999872231739