HHsearch alignment for GI: 254780849 and conserved domain: cd03343

>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00  E-value=0  Score=730.65  Aligned_cols=465  Identities=24%  Similarity=0.363  Sum_probs=391.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             98999999999999999977367898635988858998388320888777603478522578899999998662551886
Q gi|254780849|r    9 GTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTEDSSGDG   88 (551)
Q Consensus         9 g~~a~~~~~~~~~~ia~~i~ttlGP~G~~kmi~~~~g~~~iTnDGaTIlk~l~~~hp~~~~~akll~~~a~~qd~~~GDG   88 (551)
T Consensus        13 G~~ar~~~i~g~~~lad~vk~TLGP~G~nk~i~~~~G~~~ITnDGvTIak~i~le~p----~A~ll~e~A~~~~~~aGDG   88 (517)
T cd03343          13 GRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHP----AAKMLVEVAKTQDEEVGDG   88 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCHHHHHHHCCCCCH----HHHHHHHHHHHHHHHHCCC
T ss_conf             199999999999999998747759887859998899991697779999876648697----9999999999756574686


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH------HHHHH
Q ss_conf             6679999999999999999769889999998986447777676532221276--024222122555334------56888
Q gi|254780849|r   89 TTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVGS--REEIIQVATISANGD------REIGE  160 (551)
Q Consensus        89 TTtvvvLa~eLL~~a~~Li~~gihP~~Ii~G~~~a~~~al~~L~~~s~~i~~--~~~L~~vA~tS~~~~------~~l~~  160 (551)
T Consensus        89 TTTa~vLa~~ll~~~~~li~~G~~p~~I~~G~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~~k~~~~~~~~l~~  168 (517)
T cd03343          89 TTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLAD  168 (517)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             78899999999999999997699756899999999999999999717888975399999999986133024668999999


Q ss_pred             HHHHHHHHCCCC----------CHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCC
Q ss_conf             999999842432----------0001101465520333302320011224765423310134441131022013564410
Q gi|254780849|r  161 KIAYAMEQIGPH----------GIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISAL  230 (551)
Q Consensus       161 li~~A~~~i~~d----------~vi~i~~~~~~~~d~~li~G~~id~g~~~~~fi~~~~~~~~~~~n~~Ili~d~~Le~~  230 (551)
T Consensus       169 l~~~av~~v~~~~~~~~~~d~~~i~i~~~~G~~~~~s~l~~G~v~~~~~~~~-------~m~~~~~n~~Ill~~~~le~~  241 (517)
T cd03343         169 LVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHP-------GMPKRVENAKIALLDAPLEVK  241 (517)
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCEEEEEEECCCEECCEEEEEEEECCHHHCC-------CCHHHHCCCEEEEECCHHHHH
T ss_conf             9999999987358985166335169999808716756544107983202100-------241231275244443266664


Q ss_pred             CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHH----------------HHHHHHHHHH
Q ss_conf             011146775311162122222333588886531213568323222212305676----------------6998865211
Q gi|254780849|r  231 QPLLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDR----------------RKEVLRDIAA  294 (551)
Q Consensus       231 ~~~~~~le~~~~~~~~l~ii~~~~e~~~l~~lv~n~~k~gi~v~~vk~~~~~~~----------------~~~~L~dia~  294 (551)
T Consensus       242 ~~~~~~~i~i~~~~~~~~~--~~~e~~~l~~~v~~i~~~g~~vvi~~-~gi~d~a~~~l~~~~i~~~~~v~~~~l~~ia~  318 (517)
T cd03343         242 KTEIDAKIRITSPDQLQAF--LEQEEAMLKEMVDKIADTGANVVFCQ-KGIDDLAQHYLAKAGILAVRRVKKSDMEKLAR  318 (517)
T ss_pred             HHHHCCEEEECCHHHHHHH--HHHHHHHHHHHHHHHHHHCCCEEEEC-CCCCHHHHHHHHHCCCCEEEEECHHHHHHHHH
T ss_conf             4322122450799999999--99999999999999985177679853-77436899999876983575422878999998


Q ss_pred             HCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCC
Q ss_conf             01123321010632211222224410278980467301377421777765433467765413563111101222102334
Q gi|254780849|r  295 VVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAG  374 (551)
Q Consensus       295 ~tGa~vi~~~~~~~l~~~~~~~LG~~~~v~i~~~~~~ii~~~~~~~~i~~~i~~l~~~ie~~~~~~~~~~~~er~~~l~g  374 (551)
T Consensus       319 ~tga~~i~-----~~~~~~~~~lG~a~~v~~~~~~-------------------------------~~~~~~~~~~~~~~  362 (517)
T cd03343         319 ATGAKIVT-----NIDDLTPEDLGEAELVEERKVG-------------------------------DDKMVFVEGCKNPK  362 (517)
T ss_pred             HCCCEEEE-----ECCCCCHHHCCCCCEEEEEEEC-------------------------------CEEEEEEECCCCCC
T ss_conf             51978975-----3476888666505169999987-------------------------------74689986278874


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHH
Q ss_conf             432125676531468989887788999987540278-105553799999999745089--96899999999999999999
Q gi|254780849|r  375 GVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEG-IVPGGGIALVRAAQALSVKGD--NEDQCAGIEIVRKALSYPCR  451 (551)
Q Consensus       375 ~~~tI~vgg~t~~~~~E~~r~~~DAl~v~~~~~~~~-vvpGGGa~e~~ls~~l~~~~~--~~~~~~~i~~fa~AL~~ip~  451 (551)
T Consensus       363 -~~tIii~G~te~~~~E~k~~i~DAl~a~kaaieeg~iVpGGG~a~~~~s~~l~~~~~~~~~~e~~gi~~~~~AL~~p~~  441 (517)
T cd03343         363 -AVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPR  441 (517)
T ss_pred             -EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             -2799982674889999998776689999998548988558669999999999987356872799999999999999999


Q ss_pred             HHHHHCCCCHHHHHHHHHHCC---CCCEEEECCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999977999899999998168---9866588668727213883983704789999999999999866099997158
Q gi|254780849|r  452 QIIKNAGDESELIVSKIQESK---TANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDA  524 (551)
Q Consensus       452 ~La~NaG~d~~~~i~~l~~~~---~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iLriD~iI~~~  524 (551)
T Consensus       442 ~ia~NAG~d~~~v~~~l~~~~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~V~~~al~~A~~vA~~iL~id~iI~~k  517 (517)
T cd03343         442 TLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAAK  517 (517)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999779778999999999973589977897789947028878793568999999998999999999999998088