HHsearch alignment for GI: 254780849 and conserved domain: cd03343
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=0 Score=730.65 Aligned_cols=465 Identities=24% Similarity=0.363 Sum_probs=391.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 98999999999999999977367898635988858998388320888777603478522578899999998662551886
Q gi|254780849|r 9 GTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTEDSSGDG 88 (551)
Q Consensus 9 g~~a~~~~~~~~~~ia~~i~ttlGP~G~~kmi~~~~g~~~iTnDGaTIlk~l~~~hp~~~~~akll~~~a~~qd~~~GDG 88 (551)
T Consensus 13 G~~ar~~~i~g~~~lad~vk~TLGP~G~nk~i~~~~G~~~ITnDGvTIak~i~le~p----~A~ll~e~A~~~~~~aGDG 88 (517)
T cd03343 13 GRDAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHP----AAKMLVEVAKTQDEEVGDG 88 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEECCHHHHHHHCCCCCH----HHHHHHHHHHHHHHHHCCC
T ss_conf 199999999999999998747759887859998899991697779999876648697----9999999999756574686
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHH------HHHHH
Q ss_conf 6679999999999999999769889999998986447777676532221276--024222122555334------56888
Q gi|254780849|r 89 TTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVGS--REEIIQVATISANGD------REIGE 160 (551)
Q Consensus 89 TTtvvvLa~eLL~~a~~Li~~gihP~~Ii~G~~~a~~~al~~L~~~s~~i~~--~~~L~~vA~tS~~~~------~~l~~ 160 (551)
T Consensus 89 TTTa~vLa~~ll~~~~~li~~G~~p~~I~~G~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~~k~~~~~~~~l~~ 168 (517)
T cd03343 89 TTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLAD 168 (517)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 78899999999999999997699756899999999999999999717888975399999999986133024668999999
Q ss_pred HHHHHHHHCCCC----------CHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCCCC
Q ss_conf 999999842432----------0001101465520333302320011224765423310134441131022013564410
Q gi|254780849|r 161 KIAYAMEQIGPH----------GIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISAL 230 (551)
Q Consensus 161 li~~A~~~i~~d----------~vi~i~~~~~~~~d~~li~G~~id~g~~~~~fi~~~~~~~~~~~n~~Ili~d~~Le~~ 230 (551)
T Consensus 169 l~~~av~~v~~~~~~~~~~d~~~i~i~~~~G~~~~~s~l~~G~v~~~~~~~~-------~m~~~~~n~~Ill~~~~le~~ 241 (517)
T cd03343 169 LVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHP-------GMPKRVENAKIALLDAPLEVK 241 (517)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCEEEEEEECCCEECCEEEEEEEECCHHHCC-------CCHHHHCCCEEEEECCHHHHH
T ss_conf 9999999987358985166335169999808716756544107983202100-------241231275244443266664
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHH----------------HHHHHHHHHH
Q ss_conf 011146775311162122222333588886531213568323222212305676----------------6998865211
Q gi|254780849|r 231 QPLLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDR----------------RKEVLRDIAA 294 (551)
Q Consensus 231 ~~~~~~le~~~~~~~~l~ii~~~~e~~~l~~lv~n~~k~gi~v~~vk~~~~~~~----------------~~~~L~dia~ 294 (551)
T Consensus 242 ~~~~~~~i~i~~~~~~~~~--~~~e~~~l~~~v~~i~~~g~~vvi~~-~gi~d~a~~~l~~~~i~~~~~v~~~~l~~ia~ 318 (517)
T cd03343 242 KTEIDAKIRITSPDQLQAF--LEQEEAMLKEMVDKIADTGANVVFCQ-KGIDDLAQHYLAKAGILAVRRVKKSDMEKLAR 318 (517)
T ss_pred HHHHCCEEEECCHHHHHHH--HHHHHHHHHHHHHHHHHHCCCEEEEC-CCCCHHHHHHHHHCCCCEEEEECHHHHHHHHH
T ss_conf 4322122450799999999--99999999999999985177679853-77436899999876983575422878999998
Q ss_pred HCCCCCCCHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCC
Q ss_conf 01123321010632211222224410278980467301377421777765433467765413563111101222102334
Q gi|254780849|r 295 VVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAG 374 (551)
Q Consensus 295 ~tGa~vi~~~~~~~l~~~~~~~LG~~~~v~i~~~~~~ii~~~~~~~~i~~~i~~l~~~ie~~~~~~~~~~~~er~~~l~g 374 (551)
T Consensus 319 ~tga~~i~-----~~~~~~~~~lG~a~~v~~~~~~-------------------------------~~~~~~~~~~~~~~ 362 (517)
T cd03343 319 ATGAKIVT-----NIDDLTPEDLGEAELVEERKVG-------------------------------DDKMVFVEGCKNPK 362 (517)
T ss_pred HCCCEEEE-----ECCCCCHHHCCCCCEEEEEEEC-------------------------------CEEEEEEECCCCCC
T ss_conf 51978975-----3476888666505169999987-------------------------------74689986278874
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHH
Q ss_conf 432125676531468989887788999987540278-105553799999999745089--96899999999999999999
Q gi|254780849|r 375 GVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEG-IVPGGGIALVRAAQALSVKGD--NEDQCAGIEIVRKALSYPCR 451 (551)
Q Consensus 375 ~~~tI~vgg~t~~~~~E~~r~~~DAl~v~~~~~~~~-vvpGGGa~e~~ls~~l~~~~~--~~~~~~~i~~fa~AL~~ip~ 451 (551)
T Consensus 363 -~~tIii~G~te~~~~E~k~~i~DAl~a~kaaieeg~iVpGGG~a~~~~s~~l~~~~~~~~~~e~~gi~~~~~AL~~p~~ 441 (517)
T cd03343 363 -AVTILLRGGTEHVVDELERALEDALRVVADALEDGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPR 441 (517)
T ss_pred -EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf -2799982674889999998776689999998548988558669999999999987356872799999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHCC---CCCEEEECCCCCEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999977999899999998168---9866588668727213883983704789999999999999866099997158
Q gi|254780849|r 452 QIIKNAGDESELIVSKIQESK---TANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDA 524 (551)
Q Consensus 452 ~La~NaG~d~~~~i~~l~~~~---~~~~G~d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iLriD~iI~~~ 524 (551)
T Consensus 442 ~ia~NAG~d~~~v~~~l~~~~~~~~~~~G~d~~~g~~~dm~~~GIiDp~~V~~~al~~A~~vA~~iL~id~iI~~k 517 (517)
T cd03343 442 TLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAAK 517 (517)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCCEEEECCCCEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999779778999999999973589977897789947028878793568999999998999999999999998088