RPSBLAST alignment for GI: 254780849 and conserved domain: cd03341
>gnl|CDD|73352 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.. Length = 472
Score = 63.3 bits (154), Expect = 2e-10
Identities = 100/541 (18%), Positives = 199/541 (36%), Gaps = 125/541 (23%)
Query: 20 VNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVAT 79
L++ + + GP G ++ N VT D T+ + + + H A+++ +
Sbjct: 17 CKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQ---HPA-AKLLVMASQ 72
Query: 80 NTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLK------- 132
E+ GDGT LA + + + + GL+P +I G + A+++ +E L+
Sbjct: 73 MQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKI 132
Query: 133 ANHKKVGSREEIIQVATISANGDRE--IGEKIAYAMEQIGPHGIITIDQAKTATTEVRVV 190
+ + + ++ A S E + +A A + P I + +RVV
Sbjct: 133 EDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFN-----VDNIRVV 187
Query: 191 Q--GMQIDRGYISPYFVTSTERMTA--EVENPYILIY----DKKISALQPLLPILESATQ 242
+ G ++ + V E + V+ + ++ D ++
Sbjct: 188 KILGGSLEDSKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDIGVN-------------- 233
Query: 243 SGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI- 301
I+A GD LA N+ ++ +K + K LR + VGAT +
Sbjct: 234 -----VIVAGGSVGD-LALHYCNKYG----IMVIKINS-----KFELRRLCRTVGATPLP 278
Query: 302 ------SEEIGLKLEKATIADLGSAKKVVMSKDD------TTIVGGNGPSERIEGRINEI 349
EEIG + + ++G K VV ++ T ++ G + ++++
Sbjct: 279 RLGAPTPEEIG-YCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGA-----TQNILDDV 332
Query: 350 QKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDE 409
++AI+D GV V + D
Sbjct: 333 ERAIDD-------------------GVNVFKS-----------------------LTKDG 350
Query: 410 GIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVS 466
VPG G I L + + K +Q A I+ +A R + +NAG ++ ++S
Sbjct: 351 RFVPGAGATEIELAKKLKEYGEKTPGLEQYA-IKKFAEAFEVVPRTLAENAGLDATEVLS 409
Query: 467 KI-----QESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVV 521
++ + +K+A + D E GI D + + A++ A A +L + ++
Sbjct: 410 ELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQII 469
Query: 522 V 522
+
Sbjct: 470 M 470