RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus
Liberibacter asiaticus str. psy62]
         (551 letters)



>gnl|CDD|48161 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are
           involved in productive folding of proteins. They share a
           common general morphology, a double toroid of 2 stacked
           rings, each composed of 7-9 subunits. The symmetry of
           type I is seven-fold and they are found in eubacteria
           (GroEL) and in organelles of eubacterial descent (hsp60
           and RBP). With the aid of cochaperonin GroES, GroEL
           encapsulates non-native substrate proteins inside the
           cavity of the GroEL-ES complex and promotes folding by
           using energy derived from ATP hydrolysis..
          Length = 520

 Score =  714 bits (1845), Expect = 0.0
 Identities = 322/521 (61%), Positives = 404/521 (77%), Gaps = 2/521 (0%)

Query: 4   KDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFK 63
           KDIK G  AR A+  GVN LA+AVK TLGPKGR V+I  SFG+P++TKDGVTVAK I  +
Sbjct: 1   KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELE 60

Query: 64  NHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLA 123
           + F  +GA+++++VA+ T D +GDGTTTAT LA+AI  EG K V AG NPMD+KRGI+ A
Sbjct: 61  DPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKA 120

Query: 124 VQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAKTA 183
           V+ VVE LK   K V ++EEI QVATISANGD EIGE IA AME++G  G+IT+++ KT 
Sbjct: 121 VEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTL 180

Query: 184 TTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESATQS 243
            TE+ VV+GMQ DRGY+SPYFVT  E+M  E+ENPYIL+ DKKIS++Q LLPILE   ++
Sbjct: 181 ETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKA 240

Query: 244 GRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVISE 303
           GRPL IIAEDVEG+ALATLVVN++R GL V AVKAP FGDRRK +L DIA + G TVISE
Sbjct: 241 GRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISE 300

Query: 304 EIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRD 363
           E+GLKLE  T+ DLG AKKVV++KDDTTI+GG G    I+ RI +I+K IE+T SDYD++
Sbjct: 301 ELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKE 360

Query: 364 KLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVRAA 423
           KL+ERLAKL+GGVAV++VG  TE  L EKKDR +D+L+ATRAA +EGIVPGGG+AL+RA+
Sbjct: 361 KLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRAS 420

Query: 424 QAL-SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNAQK 482
            AL  +K  N D+  GIEIVR+AL  P RQI +NAG +  ++V K+ ES    +GY+A  
Sbjct: 421 PALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESP-DGFGYDAAT 479

Query: 483 SVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVD 523
             + DM E GIIDP KVVR+ALQ+A S+A ++L TEA+VVD
Sbjct: 480 GEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVVD 520


>gnl|CDD|35577 KOG0356, KOG0356, KOG0356, Mitochondrial chaperonin, Cpn60/Hsp60p
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 550

 Score =  552 bits (1423), Expect = e-157
 Identities = 287/543 (52%), Positives = 385/543 (70%), Gaps = 10/543 (1%)

Query: 2   AAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSIS 61
            AKDIK G   R  +  GV+ LA+AV  TLGPKGR VII  S+G+P+VTKDGVTVAKSI 
Sbjct: 15  YAKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIE 74

Query: 62  FKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGID 121
            K+ +  +GA++++DVA NT + +GDGTTTAT LA+AI  EG + V  G NP++I+RGI 
Sbjct: 75  LKDKYENIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIM 134

Query: 122 LAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAK 181
           LAV  VV+ LK   K V + EEI QVATISANGD+EIG  I+ AM+++G  G+IT+   K
Sbjct: 135 LAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGK 194

Query: 182 TATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESAT 241
           T   E+ V++GM+ DRGYISPYF+TS+++   E EN  +L+ +KKIS++Q ++P LE A 
Sbjct: 195 TLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELAL 254

Query: 242 QSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI 301
              RPL IIAED++G+ALATLV+N+++ GL V+AVKAP FGD RK +L+DIA + GATV 
Sbjct: 255 AKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVF 314

Query: 302 SEEIG-LKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360
            EE+  L LE A + DLG   +VV++KDDT ++ G G   ++EGRI +I++ IE+T SDY
Sbjct: 315 GEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDY 374

Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420
           +++KL ERLAKL+GGVAV++VG  +E  + EKKDR +D+L+ATRAA +EGIVPGGG AL+
Sbjct: 375 EKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALL 434

Query: 421 RAAQALS--VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGY 478
           RA   L      +N DQ  G+EIV+KAL  P + I KNAG +  ++V K+      +YGY
Sbjct: 435 RAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLND---DYGY 491

Query: 479 NAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGG 538
           +A K  + D+ E GIIDP KVVR AL  A  +A ++  TEAVV + PK+E        GG
Sbjct: 492 DAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEEA----GNPGG 547

Query: 539 GMG 541
           GMG
Sbjct: 548 GMG 550


>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL.
          Length = 529

 Score =  542 bits (1397), Expect = e-154
 Identities = 251/530 (47%), Positives = 360/530 (67%), Gaps = 6/530 (1%)

Query: 3   AKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISF 62
           +K I     AR A+  G++ LAEAV  TLGPKGR V++   +G+P++  DGVT+AK I  
Sbjct: 2   SKKILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIEL 61

Query: 63  KNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDL 122
           ++H    G  +IR  A+ T D +GDGTTTAT LA AI  +G K V AG NP+ +KRGI+ 
Sbjct: 62  EDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEK 121

Query: 123 AVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAKT 182
           A Q VV  +    + V   + I QVA+ISA  D E+G  IA A+E++G  G+I++++ K+
Sbjct: 122 ATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKS 181

Query: 183 ATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISAL-QPLLPILESAT 241
             TE+ + +GM+ ++G+ISPYFVT TERM    ENPYIL+ DKKI+ + Q LLPILE  T
Sbjct: 182 TVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVT 241

Query: 242 QSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI 301
           ++ RPL IIAEDVE +ALATLV+N++R  + V+AV+AP FGDRRK +L DIA + G  VI
Sbjct: 242 KTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVI 301

Query: 302 SEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYD 361
           +E+ GL LE   +  LG A++++++KD TTI+  +G  E+++ R  +++K IE   S Y+
Sbjct: 302 TEDAGLSLETIQLDLLGQARRIIVTKDSTTII-ADGNEEQVKARCEQLRKQIEIADSSYE 360

Query: 362 RDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVR 421
           ++KL+ERLAKL+GGVAV++VG  TE  + +KK R +D+++AT+AA +EGIVPGGG  LV 
Sbjct: 361 KEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVH 420

Query: 422 AAQALSVKGDN---EDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGY 478
            ++ L     N   ED+  G  IV +A+  P ++I +NAG    +I+ K+QE +    GY
Sbjct: 421 LSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQE-QDFEIGY 479

Query: 479 NAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDE 528
           NA  + F +M+E GIIDP KV R+ALQ+A S+A M+L TE ++VD  +  
Sbjct: 480 NAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKESS 529


>gnl|CDD|30807 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational
           modification, protein turnover, chaperones].
          Length = 524

 Score =  431 bits (1109), Expect = e-121
 Identities = 233/550 (42%), Positives = 317/550 (57%), Gaps = 42/550 (7%)

Query: 1   MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60
           M  K+ K G  AR +       LA+AVK TLGPKGR  ++ +S G   +T DGVT+ K I
Sbjct: 1   MMGKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEI 60

Query: 61  SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120
             ++     GA+++ +VA   +D +GDGTTTA  LA A+  E  K + AG++P  IKRG 
Sbjct: 61  ELEH----PGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGY 116

Query: 121 DLAVQEVVEYLKANHKKVGSRE-----EIIQVATISANGDREIGEKIAYAMEQIGP---- 171
            LAV++ VE LK   K V   E      I  VA+ SAN D EIGE +  A+E++G     
Sbjct: 117 RLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSD 176

Query: 172 -HGIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISAL 230
             GII + ++  + TE+ VV+GM  D+GY+SPYF+         +ENP IL+ DKK+   
Sbjct: 177 LDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDK-----RLENPKILLLDKKLEIK 231

Query: 231 QPLLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLR 290
           +P LP LE    SG+PL IIAED EG+ALATLVVN +R G  V+ VKAP   D  K  L 
Sbjct: 232 KPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLE 290

Query: 291 DIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQ 350
           DIA + G  V  E++G +L K     LG AK V + KD TTIV G G +  +E       
Sbjct: 291 DIAILTGRRVKKEDLGERLAK-----LGGAKIVSVLKDLTTIVLGEGAAGLVE------- 338

Query: 351 KAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEG 410
              E    DYD +KL+ER AK AGGVA + V   TE  L EK+ R +D+L+  RAA +EG
Sbjct: 339 ---ETKTGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEG 394

Query: 411 -IVPGGGIALVRAAQALSVKGDN---EDQCAGIEIVRKALSYPCRQIIKNAGDESELIVS 466
            IVPGGG A + AA  L          D+  GIE   +AL  P RQ+ +NAG +   ++S
Sbjct: 395 KIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLS 454

Query: 467 KIQESK-TANYGYNAQK-SVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDA 524
           K++ +  T NYG +A       DM E GIIDP+KV R+AL++A   AG++L  + ++   
Sbjct: 455 KLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAK 514

Query: 525 PKDETASPQM 534
           P+++  +P  
Sbjct: 515 PEEKKPAPPG 524


>gnl|CDD|143893 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family.  This family
           includes members from the HSP60 chaperone family and the
           TCP-1 (T-complex protein) family.
          Length = 481

 Score =  340 bits (874), Expect = 7e-94
 Identities = 160/545 (29%), Positives = 255/545 (46%), Gaps = 106/545 (19%)

Query: 23  LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82
           LA+AVK TLGPKGR  ++ N  G   +T DG T+ K I  ++      A+++ + A + +
Sbjct: 1   LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPA----AKLLVEAAKSQD 56

Query: 83  DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKV-GSR 141
           +  GDGTTTA  LA  +  E  K + AG++P DI RG +LA++  ++ L+     V    
Sbjct: 57  EEVGDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDD 116

Query: 142 EEIIQVATISANGD------REIGEKIAYAM------EQIGPHGIITIDQAKTATTEVRV 189
           E+++ VA  S N          +G+ +  A+        +G  G+I I+      +E  +
Sbjct: 117 EDLLNVARTSLNSKISSRESELLGKLVVDAVLLIIEKFDVGNIGVIKIEGGSLEDSE--L 174

Query: 190 VQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQP----------------- 232
           ++G+ +D+GY+SP        M   +ENP IL+ D  +   +                  
Sbjct: 175 IEGIVLDKGYLSP-------DMPKRLENPKILLLDCPLEYEKTEKVIISTAEELERLLEA 227

Query: 233 ----LLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEV 288
               LLP+LE    +G  L II + ++  AL  L  N +     V           +KE 
Sbjct: 228 EEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRV-----------KKED 276

Query: 289 LRDIAAVVGATVISEEIGLKLEKATIADLGSAKKV---VMSKDDTTIVGGNGPSERIEGR 345
           L  +A   GATV+S    L+ +     +LGSA KV    + +D TT + G          
Sbjct: 277 LERLAKATGATVVSSLDDLEPD-----ELGSAGKVEEREIGEDKTTFIEG---------- 321

Query: 346 INEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRA 405
                                     L+G VA + +   T+  L E +   +D+L+A +A
Sbjct: 322 -------------------------CLSGKVATILLRGATDHELDELERAIEDALNAVKA 356

Query: 406 A-SDEGIVPGGGIALVRAAQALS--VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESE 462
           A  DEG+VPGGG A +  ++AL    K  +  +  GIE   +AL    R + +NAG +  
Sbjct: 357 ALKDEGVVPGGGAAELELSRALREYAKSVSGKEQLGIEAFAEALEVIPRTLAENAGLDPI 416

Query: 463 LIVSKIQE--SKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAV 520
            +++K++    K  N G +A     GDM E GIIDP+KV R+AL+SA  +A ++L  + +
Sbjct: 417 EVLAKLKAAHKKGNNLGIDADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQI 476

Query: 521 VVDAP 525
           +   P
Sbjct: 477 IKAKP 481


>gnl|CDD|73189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type
           II. Chaperonins are involved in productive folding of
           proteins. They share a common general morphology, a
           double toroid of 2 stacked rings, each composed of 7-9
           subunits. There are 2 main chaperonin groups. The
           symmetry of type I is seven-fold and they are found in
           eubacteria (GroEL) and in organelles of eubacterial
           descent (hsp60 and RBP). The symmetry of type II is
           eight- or nine-fold and they are found in archea
           (thermosome), thermophilic bacteria (TF55) and  in the
           eukaryotic cytosol (CTT). Their common function is to
           sequester nonnative proteins inside their central cavity
           and promote folding by using energy derived from ATP
           hydrolysis..
          Length = 464

 Score =  333 bits (856), Expect = 8e-92
 Identities = 171/545 (31%), Positives = 253/545 (46%), Gaps = 107/545 (19%)

Query: 4   KDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFK 63
           K+ + G  AR +       LA+AVK TLGPKG   ++ +S G P +T DG T+ K I  +
Sbjct: 1   KEREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVE 60

Query: 64  NHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLA 123
           +      A+++ +VA + +D  GDGTTT   LA  +  E  K + AG++P +I RG + A
Sbjct: 61  H----PAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKA 116

Query: 124 VQEVVEYLK--ANHKKVGSREEIIQVATISAN------GDREIGEKIAYAMEQIGP---- 171
           V++ +E LK  A    V  REE+++VAT S N      GD  +GE +  A+ ++G     
Sbjct: 117 VEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGD 176

Query: 172 --HGIITIDQAKTAT-TEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKIS 228
              G+I +++ K  +  +  +V GM  D+GY+SPY       M   +EN  IL+ D K+ 
Sbjct: 177 VDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPY-------MPKRLENAKILLLDCKLE 229

Query: 229 ALQPLLPILESATQSGRPLCIIAED-VEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKE 287
            +                  +IAE  ++ +AL  L          ++AV+       RKE
Sbjct: 230 YV------------------VIAEKGIDDEALHYLAKLG------IMAVRR-----VRKE 260

Query: 288 VLRDIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSK----DDTTIVGGNGPSERIE 343
            L  IA   GAT++S      LE  T  DLG+A  V  +K      T I G  G      
Sbjct: 261 DLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG------ 309

Query: 344 GRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDAT 403
                                         G VA + +   TE  L E +    D+L A 
Sbjct: 310 ------------------------------GKVATILLRGATEVELDEAERSLHDALCAV 339

Query: 404 RAA-SDEGIVPGGGIALVRAAQALS--VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDE 460
           RAA  D GIVPGGG A +  ++AL    K     +  GIE    AL    R + +NAG +
Sbjct: 340 RAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLD 399

Query: 461 SELIVSKIQESKTA---NYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLIT 517
              +V+K++        N G + +     DM E GIIDP+KV R AL+SA   A ++L  
Sbjct: 400 PIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTI 459

Query: 518 EAVVV 522
           + ++V
Sbjct: 460 DDIIV 464


>gnl|CDD|73350 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins
           are involved in productive folding of proteins. They
           share a common general morphology, a double toroid of 2
           stacked rings, each composed of 7-9 subunits. There are
           2 main chaperonin groups. The symmetry of type I is
           seven-fold and they are found in eubacteria (GroEL) and
           in organelles of eubacterial descent (hsp60 and RBP).
           The symmetry of type II is eight- or nine-fold and they
           are found in archea (thermosome), thermophilic bacteria
           (TF55) and  in the eukaryotic cytosol (CTT). Their
           common function is to sequester nonnative proteins
           inside their central cavity and promote folding by using
           energy derived from ATP hydrolysis. This superfamily
           also contains related domains from Fab1-like
           phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases
           that only contain the intermediate and apical domains..
          Length = 209

 Score =  102 bits (257), Expect = 2e-22
 Identities = 73/286 (25%), Positives = 110/286 (38%), Gaps = 94/286 (32%)

Query: 141 REEIIQVATISAN-----GDREIGEKIAYAMEQIGP------HGIITIDQAKTAT-TEVR 188
           RE ++QVAT S N      D  +G+ +  A+ ++GP       G+I +++    +  +  
Sbjct: 1   RELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSE 60

Query: 189 VVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESATQSGRPLC 248
           +V G+  D+GY SPY       M   +EN  IL+ D  +  +                  
Sbjct: 61  LVVGVVFDKGYASPY-------MPKRLENAKILLLDCPLEYV------------------ 95

Query: 249 IIAED-VEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVISEEIGL 307
           +IAE  ++  AL  L    +      +AV+       +KE L  IA   GAT++S     
Sbjct: 96  VIAEKGIDDLALHYLAKAGI------MAVRR-----VKKEDLERIARATGATIVSS---- 140

Query: 308 KLEKATIADLGSAKKVVMSKD----DTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRD 363
            LE  T  DLG+A+ V  +K      T I G  G                          
Sbjct: 141 -LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKG-------------------------- 173

Query: 364 KLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDE 409
                     G  A + +   TE  L E K    D+L A RAA +E
Sbjct: 174 ----------GKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209


>gnl|CDD|48160 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved
           in productive folding of proteins. They share a common
           general morphology, a double toroid of 2 stacked rings.
           Archaeal cpn60 (thermosome), together with TF55 from
           thermophilic bacteria and the eukaryotic cytosol
           chaperonin (CTT), belong to the type II group of
           chaperonins. Cpn60 consists of two stacked octameric
           rings, which are composed of one or two different
           subunits.  Their common function is to sequester
           nonnative proteins inside their central cavity and
           promote folding by using energy derived from ATP
           hydrolysis..
          Length = 517

 Score = 97.2 bits (242), Expect = 9e-21
 Identities = 128/534 (23%), Positives = 216/534 (40%), Gaps = 91/534 (17%)

Query: 22  TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81
            +AEAV+ TLGPKG   ++ +S G   +T DG T+ K +  ++      A+M+ +VA   
Sbjct: 26  AVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHP----AAKMLVEVAKTQ 81

Query: 82  EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVG-- 139
           ++  GDGTTTA  LA  +  +    +   ++P  I  G  LA ++ +E L     KV   
Sbjct: 82  DEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPD 141

Query: 140 SREEIIQVATISANG-----DREIGEKIAY-----AMEQIGPHGIITIDQAKT------A 183
            ++ + ++A  S  G      ++    +         E+     ++ +D  K       +
Sbjct: 142 DKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGS 201

Query: 184 TTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPI---LESA 240
             +  +++G+ ID+  + P        M   VEN  I + D  +   +  +     + S 
Sbjct: 202 VDDTELIRGIVIDKEVVHP-------GMPKRVENAKIALLDAPLEVKKTEIDAKIRITSP 254

Query: 241 TQSGRPLCIIAEDVEG--DALATLVVNRVRC--GLPVLA----VKAPAFGDRR--KEVLR 290
            Q    L      ++   D +A    N V C  G+  LA     KA     RR  K  + 
Sbjct: 255 DQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDME 314

Query: 291 DIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQ 350
            +A   GA +++      ++  T  DLG A+ V                           
Sbjct: 315 KLARATGAKIVT-----NIDDLTPEDLGEAELV--------------------------- 342

Query: 351 KAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEG 410
               + +   D   +     K    V +L  G  TE  + E +   +D+L     A ++G
Sbjct: 343 ----EERKVGDDKMVFVEGCKNPKAVTILLRGG-TEHVVDELERALEDALRVVADALEDG 397

Query: 411 -IVPGGGIALVRAAQAL-----SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAG-DESEL 463
            +V GGG   +  A+ L     SV G   +Q A +E    AL    R + +NAG D  + 
Sbjct: 398 KVVAGGGAVEIELAKRLREYARSVGG--REQLA-VEAFADALEEIPRTLAENAGLDPIDT 454

Query: 464 IVS--KIQESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMML 515
           +V      E    N G +       DM E G+I+P++V + A++SA   A M+L
Sbjct: 455 LVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMIL 508


>gnl|CDD|73353 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin
           family, zeta subunit. Chaperonins are involved in
           productive folding of proteins. They share a common
           general morphology, a double toroid of 2 stacked rings.
           In contrast to bacterial group I chaperonins (GroEL),
           each ring of the eukaryotic cytosolic chaperonin (CTT)
           consists of eight different, but homologous subunits.
           Their common function is to sequester nonnative proteins
           inside their central cavity and promote folding by using
           energy derived from ATP hydrolysis. The best studied in
           vivo substrates of CTT are actin and tubulin..
          Length = 484

 Score = 74.8 bits (184), Expect = 6e-14
 Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 32/232 (13%)

Query: 12  ARDAIAYGVN-----TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHF 66
            R   A  VN      L + +K  LGPKG   ++ +  G  ++TKDG  +   +  ++  
Sbjct: 8   LRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT 67

Query: 67  HEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQE 126
               A MI   AT  +D +GDGTT+   L   +  +  +Y+  G++P  I  G +LA  +
Sbjct: 68  ----ASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNK 123

Query: 127 VVEYL---KANHKKVGSREEIIQVA--TISANGDREIGEKIAYAM-----------EQIG 170
            +++L   K   +    RE ++ VA  ++      ++ +++   +           E I 
Sbjct: 124 ALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPID 183

Query: 171 PHGIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILI 222
            H +  +     + ++ ++++G+ +D G   P        M   VEN YIL 
Sbjct: 184 LHMVEIMQMQHKSDSDTKLIRGLVLDHGARHP-------DMPKRVENAYILT 228



 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 51/204 (25%), Positives = 73/204 (35%), Gaps = 52/204 (25%)

Query: 367 ERLAKLAGGVAVLEVGDVTEAALG------------EK---------------------- 392
           ERL    GGVA+  V D++   LG            EK                      
Sbjct: 280 ERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPND 339

Query: 393 ------KDRYQDSLDATRAA-SDEGIVPGGGIALVRAAQAL-----SVKGDNEDQCAGIE 440
                 KD  +D L A + A  D+ +VPG G   V     L     SVKG  +    G++
Sbjct: 340 HTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAK---LGVQ 396

Query: 441 IVRKALSYPCRQIIKNAG-DESELIVSKIQESKTAN--YGYNAQKSVFGDMFEMGIIDPV 497
               AL    + + +N+G D  E +V    E        G +       D    GI D  
Sbjct: 397 AFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNY 456

Query: 498 KVVRNALQSAGSLAGMMLITEAVV 521
            V R  L SA  +A  +L+ + ++
Sbjct: 457 SVKRQILHSATVIASQLLLVDEII 480


>gnl|CDD|48153 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin
           family, beta subunit. Chaperonins are involved in
           productive folding of proteins. They share a common
           general morphology, a double toroid of 2 stacked rings.
           In contrast to bacterial group I chaperonins (GroEL),
           each ring of the eukaryotic cytosolic chaperonin (CTT)
           consists of eight different, but homologous subunits.
           Their common function is to sequester nonnative proteins
           inside their central cavity and promote folding by using
           energy derived from ATP hydrolysis. The best studied in
           vivo substrates of CTT are actin and tubulin..
          Length = 517

 Score = 68.0 bits (166), Expect = 7e-12
 Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 9   GTAARDAIAYGVNTLAEAVKCTLGPKG--RCVIIGNSFGAPRVTKDGVTVAKSISFKNHF 66
           G  AR +   G   + + VK TLGPKG  + +      G   VT DG T+ KSI   N  
Sbjct: 11  GETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDN-- 68

Query: 67  HEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQE 126
               A+++ D++   +D  GDGTT+ T LA  +  E  K V   ++P  I  G  +A   
Sbjct: 69  --PAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAA 126

Query: 127 VVEYLKANHKKVGSREE 143
             E L ++     S EE
Sbjct: 127 AREALLSSAVDHSSDEE 143



 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 6/148 (4%)

Query: 385 TEAALGEKKDRYQDSLDA-TRAASDEGIVPGGGIALVRAAQALSVKGDNED--QCAGIEI 441
           ++  L E +    D+L    +   D  +V GGG + +  A+A+          +   IE 
Sbjct: 369 SQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEA 428

Query: 442 VRKALSYPCRQIIKNAGDESELIVSKIQESKTA---NYGYNAQKSVFGDMFEMGIIDPVK 498
             KAL      I  NAG +S  +V++++ +        G + +K   GDM E+GI +  K
Sbjct: 429 FAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFK 488

Query: 499 VVRNALQSAGSLAGMMLITEAVVVDAPK 526
           V R  L SA   A M+L  + ++  AP+
Sbjct: 489 VKRQVLLSASEAAEMILRVDDIIKCAPR 516


>gnl|CDD|35584 KOG0363, KOG0363, KOG0363, Chaperonin complex component, TCP-1 beta
           subunit (CCT2) [Posttranslational modification, protein
           turnover, chaperones].
          Length = 527

 Score = 66.9 bits (163), Expect = 1e-11
 Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 9   GTAARDAIAYGVNTLAEAVKCTLGPKG--RCVIIGNSFGAPRVTKDGVTVAKSISFKNHF 66
           G  AR +   G   + + VK TLGPKG  + +      G   VT DG T+ KSI   N  
Sbjct: 16  GENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDN-- 73

Query: 67  HEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQE 126
               A+++ D++   +D  GDGTT+ T LA  +  E  K V   ++P  I  G  +A   
Sbjct: 74  --PAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAA 131

Query: 127 VVEYLKA-----NHKKVGSREEIIQVA 148
            +E L       +  K   RE+++++A
Sbjct: 132 ALEALTKSSIDNSSDKEKFREDLLKIA 158



 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 6/151 (3%)

Query: 385 TEAALGEKKDRYQDSLDA-TRAASDEGIVPGGGIALVRAAQALSVKGDNED--QCAGIEI 441
           T+  L E +    D+L    +   +  +V GGG + +  A+A+  +       +   IE 
Sbjct: 374 TQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEA 433

Query: 442 VRKALSYPCRQIIKNAGDESELIVSKIQE---SKTANYGYNAQKSVFGDMFEMGIIDPVK 498
             +AL      I  NAG +S  +V++++    +     G + +    GDM E+GI++ +K
Sbjct: 434 FARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLK 493

Query: 499 VVRNALQSAGSLAGMMLITEAVVVDAPKDET 529
           V +  + SA   A M+L  + ++  AP++  
Sbjct: 494 VKQAVVSSASEAAEMILRVDNIIKAAPRERE 524


>gnl|CDD|35580 KOG0359, KOG0359, KOG0359, Chaperonin complex component, TCP-1 zeta
           subunit (CCT6) [Posttranslational modification, protein
           turnover, chaperones].
          Length = 520

 Score = 65.4 bits (159), Expect = 4e-11
 Identities = 116/525 (22%), Positives = 206/525 (39%), Gaps = 65/525 (12%)

Query: 22  TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81
            L   +   LGPKG   ++ +  G  ++ KDG  + K +  ++      A +I  VAT  
Sbjct: 28  GLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHP----TASLIAKVATAQ 83

Query: 82  EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVGSR 141
           +D +GDGTT+   L   +  +  +Y++ GL+P  I  G + A  + +E+L+   ++V  R
Sbjct: 84  DDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREV-DR 142

Query: 142 EEIIQVA--TISANGDREIGEKIAYAM-----------EQIGPHGIITIDQAKTATTEVR 188
           E +  VA  ++      E+ + +   +           E I    +  ++    +  +  
Sbjct: 143 ETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTS 202

Query: 189 VVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLP---ILESATQSGR 245
           +VQG+ +D G   P        M   VE+ YILI +  +   +P +       +A +   
Sbjct: 203 LVQGLVLDHGARHP-------DMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREV 255

Query: 246 PLCIIAEDVEGDALATLVVNRVRCGLPVLAVKA--PAFGDRRKEVLRDIAAVVGATVISE 303
            +    + ++      + + R  C   V+  K   P           D  A  G   +  
Sbjct: 256 LVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSL--------DSLAKSGILALRR 307

Query: 304 EIGLKLEKATIADLGSAKKVVMSKDDTT--IVGGNGP-SERIEGRINEIQKAIEDTKSDY 360
                +E+  +A  G A   V S DD T   +G  G   E   G   E    IE   +  
Sbjct: 308 AKRRNMERLVLACGGEA---VNSVDDLTPDYLGYAGLVYEYTLG--EEKFTFIEKCNN-- 360

Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAA-SDEGIVPGGGIAL 419
                          V +L  G   +  + + KD  +D L A +    D+  +PG G   
Sbjct: 361 ------------PSSVTILIKGP-NKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFE 407

Query: 420 VRAAQALSVKGDNEDQCA--GIEIVRKALSYPCRQIIKNAG-DESELIVSKIQESKTANY 476
           V   + L     +    A  G++    AL    + + KN+G DE E +VS  +E +    
Sbjct: 408 VALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLR 467

Query: 477 GYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVV 521
           G +  +    D    GI D   V +  L+S   +A  +L+ + ++
Sbjct: 468 GLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEII 512


>gnl|CDD|48157 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin
           family, eta subunit. Chaperonins are involved in
           productive folding of proteins. They share a common
           general morphology, a double toroid of 2 stacked rings.
           In contrast to bacterial group I chaperonins (GroEL),
           each ring of the eukaryotic cytosolic chaperonin (CTT)
           consists of eight different, but homologous subunits.
           Their common function is to sequester nonnative proteins
           inside their central cavity and promote folding by using
           energy derived from ATP hydrolysis. The best studied in
           vivo substrates of CTT are actin and tubulin..
          Length = 522

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 4/110 (3%)

Query: 23  LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82
           +A+AV+ TLGP+G   +I +  G   ++ DG T+ K +   +  H   A+ + D+A + +
Sbjct: 28  IADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLL---DIVHPA-AKTLVDIAKSQD 83

Query: 83  DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLK 132
              GDGTT+   LA     E + ++  G++P  I RG   A+Q  +E +K
Sbjct: 84  AEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIK 133



 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 8/119 (6%)

Query: 404 RAASDEGIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDE 460
           RA  ++ +V GGG   + L +  +  S     + Q   I    KAL    RQ+  NAG +
Sbjct: 394 RAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLV-INAFAKALEIIPRQLCDNAGFD 452

Query: 461 SELIVSKIQ----ESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMML 515
           +  I++K++    +     YG +       D FE  + +P  V  NAL +A   A ++L
Sbjct: 453 ATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLIL 511


>gnl|CDD|73352 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin
           family, theta subunit. Chaperonins are involved in
           productive folding of proteins. They share a common
           general morphology, a double toroid of 2 stacked rings.
           In contrast to bacterial group I chaperonins (GroEL),
           each ring of the eukaryotic cytosolic chaperonin (CTT)
           consists of eight different, but homologous subunits.
           Their common function is to sequester nonnative proteins
           inside their central cavity and promote folding by using
           energy derived from ATP hydrolysis. The best studied in
           vivo substrates of CTT are actin and tubulin..
          Length = 472

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 100/541 (18%), Positives = 199/541 (36%), Gaps = 125/541 (23%)

Query: 20  VNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVAT 79
              L++  + + GP G   ++ N      VT D  T+ + +  +   H   A+++   + 
Sbjct: 17  CKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQ---HPA-AKLLVMASQ 72

Query: 80  NTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLK------- 132
             E+  GDGT     LA  +  +  + +  GL+P +I  G + A+++ +E L+       
Sbjct: 73  MQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKI 132

Query: 133 ANHKKVGSREEIIQVATISANGDRE--IGEKIAYAMEQIGPHGIITIDQAKTATTEVRVV 190
            + +      + ++ A  S     E  +   +A A   + P  I   +        +RVV
Sbjct: 133 EDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFN-----VDNIRVV 187

Query: 191 Q--GMQIDRGYISPYFVTSTERMTA--EVENPYILIY----DKKISALQPLLPILESATQ 242
           +  G  ++   +    V   E   +   V+   + ++    D  ++              
Sbjct: 188 KILGGSLEDSKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDIGVN-------------- 233

Query: 243 SGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI- 301
                 I+A    GD LA    N+      ++ +K  +     K  LR +   VGAT + 
Sbjct: 234 -----VIVAGGSVGD-LALHYCNKYG----IMVIKINS-----KFELRRLCRTVGATPLP 278

Query: 302 ------SEEIGLKLEKATIADLGSAKKVVMSKDD------TTIVGGNGPSERIEGRINEI 349
                  EEIG   +   + ++G  K VV  ++       T ++ G       +  ++++
Sbjct: 279 RLGAPTPEEIG-YCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGA-----TQNILDDV 332

Query: 350 QKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDE 409
           ++AI+D                   GV V +                           D 
Sbjct: 333 ERAIDD-------------------GVNVFKS-----------------------LTKDG 350

Query: 410 GIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVS 466
             VPG G   I L +  +    K    +Q A I+   +A     R + +NAG ++  ++S
Sbjct: 351 RFVPGAGATEIELAKKLKEYGEKTPGLEQYA-IKKFAEAFEVVPRTLAENAGLDATEVLS 409

Query: 467 KI-----QESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVV 521
           ++     + +K+A     +      D  E GI D +   + A++ A   A  +L  + ++
Sbjct: 410 ELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQII 469

Query: 522 V 522
           +
Sbjct: 470 M 470


>gnl|CDD|48155 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin
           family, delta subunit. Chaperonins are involved in
           productive folding of proteins. They share a common
           general morphology, a double toroid of 2 stacked rings.
           In contrast to bacterial group I chaperonins (GroEL),
           each ring of the eukaryotic cytosolic chaperonin (CTT)
           consists of eight different, but homologous subunits.
           Their common function is to sequester nonnative proteins
           inside their central cavity and promote folding by using
           energy derived from ATP hydrolysis. The best studied in
           vivo substrates of CTT are actin and tubulin..
          Length = 515

 Score = 63.3 bits (154), Expect = 2e-10
 Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 23  LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82
           +A+A++ +LGP+G   +I    G   +T DG T+ K +   +  H   A+M+ +++   +
Sbjct: 20  VADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQM---SVLHPA-AKMLVELSKAQD 75

Query: 83  DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVG--S 140
             +GDGTT+   LA A+ +     +  G++P  I     +A ++ VE L +    V    
Sbjct: 76  IEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND 135

Query: 141 REEIIQVATISAN 153
           RE +I+ AT S N
Sbjct: 136 RESLIKSATTSLN 148



 Score = 33.3 bits (76), Expect = 0.20
 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 11/114 (9%)

Query: 410 GIVPGGG-----IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELI 464
            ++PGGG     IAL  +  A ++ G  +  C  +     AL      + +NAG     I
Sbjct: 397 ALIPGGGAPEIEIALQLSEWARTLTGVEQ-YC--VRAFADALEVIPYTLAENAGLNPISI 453

Query: 465 VSKIQE---SKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMML 515
           V++++        N G N +K    ++ E  ++ P+ V  +A+  A     M+L
Sbjct: 454 VTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMIL 507


>gnl|CDD|35579 KOG0358, KOG0358, KOG0358, Chaperonin complex component, TCP-1
           delta subunit (CCT4) [Posttranslational modification,
           protein turnover, chaperones].
          Length = 534

 Score = 61.9 bits (150), Expect = 4e-10
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 6/154 (3%)

Query: 2   AAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSIS 61
           A KD +     R +       +A+A++ +LGPKG   +I    G   +T DG T+ K ++
Sbjct: 17  AFKDKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMN 76

Query: 62  FKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGID 121
                    A+M+ +++   +  +GDGTT+   LA A+     K +  G++P  I     
Sbjct: 77  V----LHPAAKMLVELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQ 132

Query: 122 LAVQEVVEYLKANHKKV--GSREEIIQVATISAN 153
            A ++ V+ L      V    RE +I+ AT S N
Sbjct: 133 SAAKKAVDILDEMSVPVELSDRESLIKSATTSLN 166



 Score = 33.4 bits (76), Expect = 0.18
 Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 6/175 (3%)

Query: 353 IEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRA-ASDEGI 411
           +E+T S  +   +K    + AG    + +    +  L E +    D+L   R       +
Sbjct: 357 VEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRAL 416

Query: 412 VPGGGIALVRAAQALSVKGDNEDQCAG--IEIVRKALSYPCRQIIKNAGDESELIVSKIQ 469
           + GGG   +  A  LS      +            AL      + +NAG      V++++
Sbjct: 417 IAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELR 476

Query: 470 ---ESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVV 521
                   N G N +K    ++ E  ++ P+ V  +A+  A      +L  + +V
Sbjct: 477 NRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIV 531


>gnl|CDD|35582 KOG0361, KOG0361, KOG0361, Chaperonin complex component, TCP-1 eta
           subunit (CCT7) [Posttranslational modification, protein
           turnover, chaperones].
          Length = 543

 Score = 59.6 bits (144), Expect = 2e-09
 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 4/110 (3%)

Query: 23  LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82
           +AEA++ TLGP+G   +I +S G   ++ DG T+ K +   +  H   A+ + D+A + +
Sbjct: 32  VAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLL---DIVHPA-AKTLVDIARSQD 87

Query: 83  DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLK 132
              GDGTT+   LA     E + ++  G++P  I R    A Q  VE +K
Sbjct: 88  AEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIK 137



 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 9/149 (6%)

Query: 404 RAASDEGIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDE 460
           RA  ++ +V GGG   + L +  +  S     + Q   I    KAL    RQ+  NAG +
Sbjct: 398 RALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ-LFINAYAKALEVIPRQLCDNAGFD 456

Query: 461 SELIVSKIQESKT---ANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLIT 517
           +  I++K+++        YG +       D FE  + +P  V  NA+ +A   A ++L  
Sbjct: 457 ATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSV 516

Query: 518 EAVVVDAPKDETASPQMPAGGGMGGGMGG 546
           +  +   PK ++A P   AG G G G   
Sbjct: 517 DETIK-NPKSQSAPP-SAAGRGRGRGRPR 543


>gnl|CDD|48152 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin
           family, alpha subunit. Chaperonins are involved in
           productive folding of proteins. They share a common
           general morphology, a double toroid of 2 stacked rings.
           In contrast to bacterial group I chaperonins (GroEL),
           each ring of the eukaryotic cytosolic chaperonin (CTT)
           consists of eight different, but homologous subunits.
           Their common function is to sequester nonnative proteins
           inside their central cavity and promote folding by using
           energy derived from ATP hydrolysis. The best studied in
           vivo substrates of CTT are actin and tubulin..
          Length = 527

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 125/562 (22%), Positives = 212/562 (37%), Gaps = 117/562 (20%)

Query: 9   GTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHE 68
           G   R         +A  VK +LGP G   ++ +  G   +T DG T+ K +  ++    
Sbjct: 6   GQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP--- 62

Query: 69  VGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVV 128
             A+++ ++A   +   GDGTT+   +A  +     + V   ++P  I  G  LA +E V
Sbjct: 63  -AAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAV 121

Query: 129 EYLKANHKKVGS---REEIIQVATIS-----ANGDREIGEKIAY----AMEQIGPHG--- 173
           +Y+K +         +E +I VA  S        D +    +      A++     G   
Sbjct: 122 KYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTK 181

Query: 174 --IITIDQAKT---ATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKIS 228
             I  ++  K    +  E  +V G  ++    S       + M   V+N  I   D  + 
Sbjct: 182 YPIKAVNILKAHGKSAKESYLVNGYALNCTRAS-------QGMPTRVKNAKIACLDFNLQ 234

Query: 229 ALQPLLPI---------LESATQSGRPLCIIAEDVEG--DALATLVVNRVRCGLPVLAVK 277
             +  L +         LE   Q  R   I  E ++    A A +V+     G+  + +K
Sbjct: 235 KTKMKLGVQVVVTDPEKLEKIRQ--RESDITKERIKKILAAGANVVL--TTGGIDDMCLK 290

Query: 278 ----APAFGDRR--KEVLRDIAAVVGATVISEEIGLKLEKA-TIADLGSAKKVVMSK--D 328
               A A   RR  KE LR IA   GAT++S    L+ E+    + LG A++VV  +  D
Sbjct: 291 YFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGD 350

Query: 329 DTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAA 388
           D  I+   G  +R    I      I    +D+  D+++  L                   
Sbjct: 351 DELIL-IKGTKKRSSASI------ILRGANDFMLDEMERSL------------------- 384

Query: 389 LGEKKDRYQDSLDA-TRAASDEGIVPGGGIALVRAAQALSVKGDN-------EDQCAGIE 440
                    D+L    R      +VPGGG        ALS+  +N        +Q A  E
Sbjct: 385 --------HDALCVVKRTLESNSVVPGGGAVET----ALSIYLENFATTLGSREQLAIAE 432

Query: 441 IVRKALSYPCRQIIKNAGDESELIVSKI-----------QESKTANYGYNAQKSVFGDMF 489
                L  P + +  NA  ++  +V+K+            +     YG +       D  
Sbjct: 433 FAEALLVIP-KTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNL 491

Query: 490 EMGIIDP----VKVVRNALQSA 507
           E G+++P    +K ++ A ++A
Sbjct: 492 EAGVLEPTVSKIKSLKFATEAA 513


>gnl|CDD|48156 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin
           family, epsilon subunit. Chaperonins are involved in
           productive folding of proteins. They share a common
           general morphology, a double toroid of 2 stacked rings.
           In contrast to bacterial group I chaperonins (GroEL),
           each ring of the eukaryotic cytosolic chaperonin (CTT)
           consists of eight different, but homologous subunits.
           Their common function is to sequester nonnative proteins
           inside their central cavity and promote folding by using
           energy derived from ATP hydrolysis. The best studied in
           vivo substrates of CTT are actin and tubulin..
          Length = 526

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 8/134 (5%)

Query: 22  TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81
           ++A  ++ +LGP+G   I+ +  G   VT DG T+ + +   +      A+++ +++ + 
Sbjct: 34  SVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQ 89

Query: 82  EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVG-- 139
           +D  GDGTT    LA A+  +  K +  G++P+ I  G + A +  VE+L+    K+   
Sbjct: 90  DDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFS 149

Query: 140 --SREEIIQVATIS 151
             ++E +IQ A  S
Sbjct: 150 PDNKEPLIQTAMTS 163



 Score = 30.6 bits (69), Expect = 1.3
 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 13/142 (9%)

Query: 391 EKKDRYQDSLDATRA-ASDEGIVPGGGIALVRAAQALSVKGDNEDQCAGIE--IVR---K 444
           E K    D+L   R    D  IV GGG A +  + A+       D+C+GIE   +R    
Sbjct: 388 EAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVE---KAADKCSGIEQYAMRAFAD 444

Query: 445 ALSYPCRQIIKNAGDESELIVSKIQ----ESKTANYGYNAQKSVFGDMFEMGIIDPVKVV 500
           AL      + +N+G      +S+++    + K  + G +       DM E  + + +   
Sbjct: 445 ALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISK 504

Query: 501 RNALQSAGSLAGMMLITEAVVV 522
           +  +  A  +  M+L  + V+V
Sbjct: 505 KQQILLATQVVKMILKIDDVIV 526


>gnl|CDD|35583 KOG0362, KOG0362, KOG0362, Chaperonin complex component, TCP-1
           theta subunit (CCT8) [Posttranslational modification,
           protein turnover, chaperones].
          Length = 537

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 110/543 (20%), Positives = 204/543 (37%), Gaps = 92/543 (16%)

Query: 20  VNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVAT 79
           V  LA  ++   GP GR  ++ N  G   VT D  T+ + +    H     A+++ +   
Sbjct: 35  VRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEV-EH---PAAKLLVEATQ 90

Query: 80  NTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKA----NH 135
             E+  GDGT     LA A+  +  + +  GL P +I  G + A +E +E L      + 
Sbjct: 91  MQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSI 150

Query: 136 KKVGSREEIIQVATISANGDRE--IGEKIAYAMEQIGPHGIITIDQAKTAT------TEV 187
             +  +E  ++   +S     E  + + +A A   I P     +D  +          + 
Sbjct: 151 GDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDS 210

Query: 188 RVVQGMQIDRG---------------YISPYFVTSTE-RMTAEVENPYILI-YDKKISAL 230
            VV GM   R                +  P+ +  TE + T  ++N   L+ + K   AL
Sbjct: 211 CVVCGMVFKRDPEGEVKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEAL 270

Query: 231 QPLLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLR 290
             L   +++   +G  + +    V+   L  L  N+ +    ++ ++  +     K  LR
Sbjct: 271 --LEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKYK----IMVLQINS-----KFDLR 317

Query: 291 DIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQ 350
            +   VGAT +      +L      +LG    V                          Q
Sbjct: 318 RLCRTVGATALP-----RLFPPAPEELGYCDSV------------------------STQ 348

Query: 351 KAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRA-ASDE 409
           +  +     +  +    R+A +    A   + D  E A+        D ++  +A  SD 
Sbjct: 349 EIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAV-------DDGVNTYKALCSDS 401

Query: 410 GIVPGGGIALVRAAQALSVKGD---NEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVS 466
            ++PG G   +  A+ +S +G       Q A I+   +AL    + + +NAG     +++
Sbjct: 402 RLLPGAGATEIELAKQISSRGATLPGLKQLA-IKKFAEALEVLPKTLAENAGLAVTEVIA 460

Query: 467 KI----QESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVV 522
           K+    Q  K       A+     D+ E GI D + V   A++ A   A  +L  + +++
Sbjct: 461 KLYAVHQGGKNLGMDIEAEGGTI-DVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIM 519

Query: 523 DAP 525
              
Sbjct: 520 AKK 522


>gnl|CDD|35581 KOG0360, KOG0360, KOG0360, Chaperonin complex component, TCP-1
           alpha subunit (CCT1) [Posttranslational modification,
           protein turnover, chaperones].
          Length = 545

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 115/549 (20%), Positives = 195/549 (35%), Gaps = 96/549 (17%)

Query: 9   GTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHE 68
           G   R         +A  VK +LGP G   ++ +  G   +T DG T+   +S     H 
Sbjct: 17  GERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATI---LSLLEVEHP 73

Query: 69  VGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVV 128
               ++ ++A   ++  GDGTT+   +A  +     + V   ++P  I  G  LA  E V
Sbjct: 74  AAKVLV-ELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAV 132

Query: 129 EYLKANHKKVG---SREEIIQVA-------TISANGDREIGEKIAYAMEQIGPHGIITID 178
           +Y+     K       + +I +A        I  + D    E +  A+  +    I+ I+
Sbjct: 133 KYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFF-TEMVVDALLAV---KILDIN 188

Query: 179 -QAKTATTEVRVVQ---GMQIDRGYISPYFVTSTE---RMTAEVENPYILIYDKKISALQ 231
            +       V +++     QI+   +  Y +  +     M   ++N  I   D  +   +
Sbjct: 189 GEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTK 248

Query: 232 PLLPILESATQSGRPLCIIAEDVE-----------GDALATLVVNRVRCGLPVLAVKAPA 280
             L +        +   I   + +             A   L    +        V+A A
Sbjct: 249 MKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGA 308

Query: 281 FGDRR--KEVLRDIAAVVGATVISEEIGLKLEKA-TIADLGSAKKVVMSK--DDTTIVGG 335
              RR  KE L+ IA   GAT++S    L+ E+    A LGSA +VV  +  DD  I+  
Sbjct: 309 MAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELIL-- 366

Query: 336 NGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDR 395
                 I+G        I    +D+                            L E +  
Sbjct: 367 ------IKGTKATSASIILRGANDF---------------------------MLDEMERS 393

Query: 396 YQDSLDATRAASDEG-IVPGGG-----IALVRAAQALSVKGDNEDQCAGIEIVRKALSYP 449
             D+L   +   +   +VPGGG     +++     A SV G  E   A  E     LS P
Sbjct: 394 LHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSV-GSREQL-AIAEFAAALLSIP 451

Query: 450 CRQIIKNAGDESELIVSKIQESKTA-----------NYGYNAQKSVFGDMFEMGIIDPVK 498
            + +  NA  +S  +V+K++   +             YG +       D    G  +P  
Sbjct: 452 -KTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPI 510

Query: 499 VVRNALQSA 507
           V   +L+ A
Sbjct: 511 VKVKSLKFA 519


>gnl|CDD|73351 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin
           family, gamma subunit. Chaperonins are involved in
           productive folding of proteins. They share a common
           general morphology, a double toroid of 2 stacked rings.
           In contrast to bacterial group I chaperonins (GroEL),
           each ring of the eukaryotic cytosolic chaperonin (CTT)
           consists of eight different, but homologous subunits.
           Their common function is to sequester nonnative proteins
           inside their central cavity and promote folding by using
           energy derived from ATP hydrolysis. The best studied in
           vivo substrates of CTT are actin and tubulin..
          Length = 480

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 49/238 (20%), Positives = 100/238 (42%), Gaps = 35/238 (14%)

Query: 9   GTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHE 68
           G  A+        T+A+ ++  LGP+    ++ +  G   +T DG  + + I      H 
Sbjct: 14  GRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVA---HP 70

Query: 69  VGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVV 128
               MI +++   ++  GDGTT+   LA  I      ++  G++P  I +    A+++ +
Sbjct: 71  AAKSMI-ELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDAL 129

Query: 129 EYLK--ANHKKVGSREEIIQV-----ATISANGDREIGEKIAY------AMEQIGPHGII 175
           + L+  +    V  R +++++      T   +   ++   +A       A+E+ G     
Sbjct: 130 KILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENG--RKK 187

Query: 176 TIDQAKTATTE---------VRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYD 224
            ID  + A  E          RV+ G+ +++    P       +M   +ENP I++ D
Sbjct: 188 EIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHP-------KMRRRIENPRIVLLD 238



 Score = 36.3 bits (84), Expect = 0.021
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 7/140 (5%)

Query: 389 LGEKKDRYQDSLDATR-AASDEGIVPGGGIALVRAAQALSVKGDNED--QCAGIEIVRKA 445
           L E +   QD++   R    +  +VPGGG   +  + ALS K  + +  +    + V  A
Sbjct: 339 LNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASA 398

Query: 446 LSYPCRQIIKNAGDESELIVSKIQESKTAN----YGYNAQKSVFGDMFEMGIIDPVKVVR 501
           L    R + +N G      +++++          +G + +     DM E+GI DP+ V  
Sbjct: 399 LEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKA 458

Query: 502 NALQSAGSLAGMMLITEAVV 521
              ++A   A M+L  + +V
Sbjct: 459 QTYKTAIEAACMLLRIDDIV 478


>gnl|CDD|35578 KOG0357, KOG0357, KOG0357, Chaperonin complex component, TCP-1
           epsilon subunit (CCT5) [Posttranslational modification,
           protein turnover, chaperones].
          Length = 400

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 13/153 (8%)

Query: 1   MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60
              KD   G  A  +       +A  ++ +LGPKG   ++ +  G   VT DGV      
Sbjct: 18  QERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDGV------ 71

Query: 61  SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120
                     A++I  ++ + +D  GDGTT    LA A+  +  + +  G++P+ I +G 
Sbjct: 72  -------HQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGY 124

Query: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISAN 153
           + A    VE+L          E I Q+    AN
Sbjct: 125 EKAKVVAVEHLDEISDPFEFEEMIQQIKETGAN 157



 Score = 31.9 bits (72), Expect = 0.49
 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 9/146 (6%)

Query: 391 EKKDRYQDSLDATRA-ASDEGIVPGGGIALVRAAQALS---VKGDNEDQCAGIEIVRKAL 446
           E K    D+L   R    D  +V GGG A +  A A+S    K    +Q A       AL
Sbjct: 256 EAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYA-FRAFADAL 314

Query: 447 SYPCRQIIKNAGDESELIVSKI----QESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRN 502
                 + +N+G +    +S +     +      G +       DM E  +I+ +   + 
Sbjct: 315 ESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQ 374

Query: 503 ALQSAGSLAGMMLITEAVVVDAPKDE 528
            +  A  +  M+L  + V      +E
Sbjct: 375 QISLATQMVRMILKIDDVRKPGESEE 400


>gnl|CDD|35585 KOG0364, KOG0364, KOG0364, Chaperonin complex component, TCP-1
           gamma subunit (CCT3) [Posttranslational modification,
           protein turnover, chaperones].
          Length = 527

 Score = 37.7 bits (87), Expect = 0.009
 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 28/220 (12%)

Query: 22  TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81
            +A+ ++  LGP+    ++ +  G   +T DG  + + I      H     MI +++   
Sbjct: 30  AIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVA---HPAAKSMI-ELSRTQ 85

Query: 82  EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVGSR 141
           ++  GDGTT+   LA  + N    ++  G++P  I +    A+++ +  L      V  +
Sbjct: 86  DEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVK 145

Query: 142 EEI-------IQVATISANGDREIGEKIAY-AMEQIGPHGIITIDQAKTATTE------- 186
           ++          V T   +   ++   +A  A++ +G      ID  + A  E       
Sbjct: 146 DQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLL 205

Query: 187 --VRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYD 224
               V++G+ I++    P       +M   +ENP I++ D
Sbjct: 206 EDSCVLKGVMINKDVTHP-------KMRRAIENPRIVLLD 238


>gnl|CDD|144567 pfam01026, TatD_DNase, TatD related DNase.  This family of proteins
           are related to a large superfamily of metalloenzymes.
           TatD, a member of this family has been shown
           experimentally to be a DNase enzyme.
          Length = 255

 Score = 33.4 bits (77), Expect = 0.19
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 66  FHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQ 125
             E G   +  V T+ +D           L  A    G+ Y   G++P +     +  ++
Sbjct: 23  AREAGVTAVVVVGTDLKDF-------ERALELARKYPGKVYAAVGVHPHEADEASEEVLE 75

Query: 126 EVVEYLKANHKKV 138
            + +   A H KV
Sbjct: 76  ALEKLKLAEHPKV 88


>gnl|CDD|146057 pfam03234, CDC37_N, Cdc37 N terminal kinase binding.  Cdc37 is a
           molecular chaperone required for the activity of
           numerous eukaryotic protein kinases. This domain
           corresponds to the N terminal domain which binds
           predominantly to protein kinases and is found N terminal
           to the Hsp (Heat shocked protein) 90-binding domain
           pfam08565. Expression of a construct consisting of only
           the N-terminal domain of Saccharomyces pombe Cdc37
           results in cellular viability. This indicates that
           interactions with the cochaperone Hsp90 may not be
           essential for Cdc37 function.
          Length = 172

 Score = 30.5 bits (69), Expect = 1.3
 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 303 EEIGLKLEKATIADLGSAKKVVMS----KDDTTIVGGNGP--SERIEGRINEIQKAIEDT 356
           E +   L +     LGS++ V+ S      D   V    P  +E +E   ++++  +++ 
Sbjct: 63  ERVDKLLSELKEESLGSSQAVMKSLNENFTDKENVEPEQPTYNEMVEDLFDQVKDEVDEK 122

Query: 357 KSDYDRDKLKERLAKLA 373
                 ++L++   KL 
Sbjct: 123 NGAALIEELQKHRDKLK 139


>gnl|CDD|173932 cd08173, Gro1PDH, Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH)
           catalyzes the reversible conversion between
           dihydroxyacetone phosphate and glycerol-1-phosphate
           using either NADH or NADPH as a coenzyme.
           Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC
           1.1.1.261) plays an important role in the formation of
           the enantiomeric configuration of the glycerophosphate
           backbone (sn-glycerol-1-phosphate) of archaeal ether
           lipids. It catalyzes the reversible conversion between
           dihydroxyacetone phosphate and glycerol-1-phosphate
           using either NADH or NADPH as a coenzyme. The activity
           is zinc-dependent. One characteristic feature of archaea
           is that their cellular membrane has an ether linkage
           between the glycerol backbone and the hydrocarbon
           residues. The polar lipids of the members of Archaea
           consist of di- and tetraethers of glycerol with
           isoprenoid alcohols bound at the sn-2 and sn-3 positions
           of the glycerol moiety. The archaeal polar lipids have
           the enantiomeric configuration of a glycerophosphate
           backbone [sn- glycerol-1-phosphate (G-1-P)] that is the
           mirror image structure of the bacterial or eukaryal
           counterpart [sn-glycerol- 3-phosphate (G-3-P)]. The
           absolute stereochemistry of the glycerol moiety in all
           archaeal polar lipids is opposite to that of glycerol
           ester lipids in bacteria and eukarya. This protein
           family is only found in Archaea.
          Length = 339

 Score = 29.2 bits (66), Expect = 3.3
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 287 EVLRDIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSER 341
             +RD    VGA   ++E+G+  E   I  L  A K+    +  TI+G  G +  
Sbjct: 278 RRIRDALKKVGAPTTAKELGIDDEIV-IEALTIAHKI--RPERYTILGEVGLTRE 329


>gnl|CDD|37230 KOG2019, KOG2019, KOG2019, Metalloendoprotease HMP1 (insulinase
           superfamily) [General function prediction only,
           Posttranslational modification, protein turnover,
           chaperones].
          Length = 998

 Score = 28.8 bits (64), Expect = 4.0
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 391 EKKDRYQDSLDATRAASDEGIVPGG-GIALVRAAQALSVKGDNEDQCAGIEIVR 443
             +D+++  +  + +    GI   G G A  R+A  L+  G   +Q  G+  + 
Sbjct: 680 TNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLE 733


>gnl|CDD|37219 KOG2008, KOG2008, KOG2008, BTK-associated SH3-domain binding
           protein SAB [Signal transduction mechanisms].
          Length = 426

 Score = 28.6 bits (63), Expect = 5.1
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 340 ERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDS 399
            R+     + ++AI+ ++  ++    K +           +  D  EA +   K  Y+ S
Sbjct: 162 GRMRQLEKKNKRAIKKSRPYFEL---KAKYTVQLE--QQKKTVDDLEAEVTLAKGEYKMS 216

Query: 400 LDATRAASDEGIVPGGGIALVRAAQ-ALSVKGDNEDQ 435
           L      SDE       I   R++Q A++   D E  
Sbjct: 217 LRNLEMISDE-------IHEERSSQSAMAPSSDGEGA 246


>gnl|CDD|109560 pfam00509, Hemagglutinin, Hemagglutinin.  Hemagglutinin from
           influenza virus causes membrane fusion of the viral
           membrane with the host membrane. Fusion occurs after the
           host cell internalises the virus by endocytosis. The
           drop of pH causes release of a hydrophobic fusion
           peptide and a large conformational change leading to
           membrane fusion.
          Length = 550

 Score = 28.1 bits (63), Expect = 7.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 342 IEGRINEIQKAIEDTKSD 359
           +E RIN + K ++D  +D
Sbjct: 401 LERRINNLNKKVDDGITD 418


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.315    0.133    0.365 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 6,042,858
Number of extensions: 320280
Number of successful extensions: 877
Number of sequences better than 10.0: 1
Number of HSP's gapped: 811
Number of HSP's successfully gapped: 71
Length of query: 551
Length of database: 6,263,737
Length adjustment: 99
Effective length of query: 452
Effective length of database: 4,124,446
Effective search space: 1864249592
Effective search space used: 1864249592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.1 bits)