RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62] (551 letters) >gnl|CDD|48161 cd03344, GroEL, GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.. Length = 520 Score = 714 bits (1845), Expect = 0.0 Identities = 322/521 (61%), Positives = 404/521 (77%), Gaps = 2/521 (0%) Query: 4 KDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFK 63 KDIK G AR A+ GVN LA+AVK TLGPKGR V+I SFG+P++TKDGVTVAK I + Sbjct: 1 KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELE 60 Query: 64 NHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLA 123 + F +GA+++++VA+ T D +GDGTTTAT LA+AI EG K V AG NPMD+KRGI+ A Sbjct: 61 DPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKA 120 Query: 124 VQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAKTA 183 V+ VVE LK K V ++EEI QVATISANGD EIGE IA AME++G G+IT+++ KT Sbjct: 121 VEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTL 180 Query: 184 TTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESATQS 243 TE+ VV+GMQ DRGY+SPYFVT E+M E+ENPYIL+ DKKIS++Q LLPILE ++ Sbjct: 181 ETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKA 240 Query: 244 GRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVISE 303 GRPL IIAEDVEG+ALATLVVN++R GL V AVKAP FGDRRK +L DIA + G TVISE Sbjct: 241 GRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISE 300 Query: 304 EIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRD 363 E+GLKLE T+ DLG AKKVV++KDDTTI+GG G I+ RI +I+K IE+T SDYD++ Sbjct: 301 ELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKE 360 Query: 364 KLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVRAA 423 KL+ERLAKL+GGVAV++VG TE L EKKDR +D+L+ATRAA +EGIVPGGG+AL+RA+ Sbjct: 361 KLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRAS 420 Query: 424 QAL-SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNAQK 482 AL +K N D+ GIEIVR+AL P RQI +NAG + ++V K+ ES +GY+A Sbjct: 421 PALDKLKALNGDEKLGIEIVRRALEAPLRQIAENAGVDGSVVVEKVLESP-DGFGYDAAT 479 Query: 483 SVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVD 523 + DM E GIIDP KVVR+ALQ+A S+A ++L TEA+VVD Sbjct: 480 GEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTTEALVVD 520 >gnl|CDD|35577 KOG0356, KOG0356, KOG0356, Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]. Length = 550 Score = 552 bits (1423), Expect = e-157 Identities = 287/543 (52%), Positives = 385/543 (70%), Gaps = 10/543 (1%) Query: 2 AAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSIS 61 AKDIK G R + GV+ LA+AV TLGPKGR VII S+G+P+VTKDGVTVAKSI Sbjct: 15 YAKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIE 74 Query: 62 FKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGID 121 K+ + +GA++++DVA NT + +GDGTTTAT LA+AI EG + V G NP++I+RGI Sbjct: 75 LKDKYENIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIM 134 Query: 122 LAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAK 181 LAV VV+ LK K V + EEI QVATISANGD+EIG I+ AM+++G G+IT+ K Sbjct: 135 LAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGK 194 Query: 182 TATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESAT 241 T E+ V++GM+ DRGYISPYF+TS+++ E EN +L+ +KKIS++Q ++P LE A Sbjct: 195 TLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPALELAL 254 Query: 242 QSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI 301 RPL IIAED++G+ALATLV+N+++ GL V+AVKAP FGD RK +L+DIA + GATV Sbjct: 255 AKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVF 314 Query: 302 SEEIG-LKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360 EE+ L LE A + DLG +VV++KDDT ++ G G ++EGRI +I++ IE+T SDY Sbjct: 315 GEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDY 374 Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420 +++KL ERLAKL+GGVAV++VG +E + EKKDR +D+L+ATRAA +EGIVPGGG AL+ Sbjct: 375 EKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALL 434 Query: 421 RAAQALS--VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGY 478 RA L +N DQ G+EIV+KAL P + I KNAG + ++V K+ +YGY Sbjct: 435 RAIPVLDELKATNNFDQKVGVEIVKKALRLPAQTIAKNAGVDGSVVVEKVLND---DYGY 491 Query: 479 NAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGG 538 +A K + D+ E GIIDP KVVR AL A +A ++ TEAVV + PK+E GG Sbjct: 492 DAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTTTEAVVTEIPKEEA----GNPGG 547 Query: 539 GMG 541 GMG Sbjct: 548 GMG 550 >gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL. Length = 529 Score = 542 bits (1397), Expect = e-154 Identities = 251/530 (47%), Positives = 360/530 (67%), Gaps = 6/530 (1%) Query: 3 AKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISF 62 +K I AR A+ G++ LAEAV TLGPKGR V++ +G+P++ DGVT+AK I Sbjct: 2 SKKILYQDNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIEL 61 Query: 63 KNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDL 122 ++H G +IR A+ T D +GDGTTTAT LA AI +G K V AG NP+ +KRGI+ Sbjct: 62 EDHIENTGVALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEK 121 Query: 123 AVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAKT 182 A Q VV + + V + I QVA+ISA D E+G IA A+E++G G+I++++ K+ Sbjct: 122 ATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKS 181 Query: 183 ATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISAL-QPLLPILESAT 241 TE+ + +GM+ ++G+ISPYFVT TERM ENPYIL+ DKKI+ + Q LLPILE T Sbjct: 182 TVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQQDLLPILEQVT 241 Query: 242 QSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI 301 ++ RPL IIAEDVE +ALATLV+N++R + V+AV+AP FGDRRK +L DIA + G VI Sbjct: 242 KTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVI 301 Query: 302 SEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYD 361 +E+ GL LE + LG A++++++KD TTI+ +G E+++ R +++K IE S Y+ Sbjct: 302 TEDAGLSLETIQLDLLGQARRIIVTKDSTTII-ADGNEEQVKARCEQLRKQIEIADSSYE 360 Query: 362 RDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVR 421 ++KL+ERLAKL+GGVAV++VG TE + +KK R +D+++AT+AA +EGIVPGGG LV Sbjct: 361 KEKLQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVH 420 Query: 422 AAQALSVKGDN---EDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGY 478 ++ L N ED+ G IV +A+ P ++I +NAG +I+ K+QE + GY Sbjct: 421 LSENLKTWAKNNLKEDELIGALIVARAILAPLKRIAENAGKNGSVIIEKVQE-QDFEIGY 479 Query: 479 NAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDE 528 NA + F +M+E GIIDP KV R+ALQ+A S+A M+L TE ++VD + Sbjct: 480 NAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTTECIIVDKKESS 529 >gnl|CDD|30807 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]. Length = 524 Score = 431 bits (1109), Expect = e-121 Identities = 233/550 (42%), Positives = 317/550 (57%), Gaps = 42/550 (7%) Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60 M K+ K G AR + LA+AVK TLGPKGR ++ +S G +T DGVT+ K I Sbjct: 1 MMGKERKFGEDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEI 60 Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120 ++ GA+++ +VA +D +GDGTTTA LA A+ E K + AG++P IKRG Sbjct: 61 ELEH----PGAKLLVEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGY 116 Query: 121 DLAVQEVVEYLKANHKKVGSRE-----EIIQVATISANGDREIGEKIAYAMEQIGP---- 171 LAV++ VE LK K V E I VA+ SAN D EIGE + A+E++G Sbjct: 117 RLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSD 176 Query: 172 -HGIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISAL 230 GII + ++ + TE+ VV+GM D+GY+SPYF+ +ENP IL+ DKK+ Sbjct: 177 LDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDK-----RLENPKILLLDKKLEIK 231 Query: 231 QPLLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLR 290 +P LP LE SG+PL IIAED EG+ALATLVVN +R G V+ VKAP D K L Sbjct: 232 KPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLE 290 Query: 291 DIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQ 350 DIA + G V E++G +L K LG AK V + KD TTIV G G + +E Sbjct: 291 DIAILTGRRVKKEDLGERLAK-----LGGAKIVSVLKDLTTIVLGEGAAGLVE------- 338 Query: 351 KAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEG 410 E DYD +KL+ER AK AGGVA + V TE L EK+ R +D+L+ RAA +EG Sbjct: 339 ---ETKTGDYDMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEG 394 Query: 411 -IVPGGGIALVRAAQALSVKGDN---EDQCAGIEIVRKALSYPCRQIIKNAGDESELIVS 466 IVPGGG A + AA L D+ GIE +AL P RQ+ +NAG + ++S Sbjct: 395 KIVPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLS 454 Query: 467 KIQESK-TANYGYNAQK-SVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDA 524 K++ + T NYG +A DM E GIIDP+KV R+AL++A AG++L + ++ Sbjct: 455 KLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAK 514 Query: 525 PKDETASPQM 534 P+++ +P Sbjct: 515 PEEKKPAPPG 524 >gnl|CDD|143893 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family. This family includes members from the HSP60 chaperone family and the TCP-1 (T-complex protein) family. Length = 481 Score = 340 bits (874), Expect = 7e-94 Identities = 160/545 (29%), Positives = 255/545 (46%), Gaps = 106/545 (19%) Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82 LA+AVK TLGPKGR ++ N G +T DG T+ K I ++ A+++ + A + + Sbjct: 1 LADAVKTTLGPKGRNKMLVNHGGKITITNDGATILKEIEIQHPA----AKLLVEAAKSQD 56 Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKV-GSR 141 + GDGTTTA LA + E K + AG++P DI RG +LA++ ++ L+ V Sbjct: 57 EEVGDGTTTAVVLAGELLEEAEKLIEAGIHPTDIIRGYELALEIALKALEELSIPVSDDD 116 Query: 142 EEIIQVATISANGD------REIGEKIAYAM------EQIGPHGIITIDQAKTATTEVRV 189 E+++ VA S N +G+ + A+ +G G+I I+ +E + Sbjct: 117 EDLLNVARTSLNSKISSRESELLGKLVVDAVLLIIEKFDVGNIGVIKIEGGSLEDSE--L 174 Query: 190 VQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQP----------------- 232 ++G+ +D+GY+SP M +ENP IL+ D + + Sbjct: 175 IEGIVLDKGYLSP-------DMPKRLENPKILLLDCPLEYEKTEKVIISTAEELERLLEA 227 Query: 233 ----LLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEV 288 LLP+LE +G L II + ++ AL L N + V +KE Sbjct: 228 EEKQLLPLLEKIVDAGVNLVIIQKGIDDLALHFLAKNGILALRRV-----------KKED 276 Query: 289 LRDIAAVVGATVISEEIGLKLEKATIADLGSAKKV---VMSKDDTTIVGGNGPSERIEGR 345 L +A GATV+S L+ + +LGSA KV + +D TT + G Sbjct: 277 LERLAKATGATVVSSLDDLEPD-----ELGSAGKVEEREIGEDKTTFIEG---------- 321 Query: 346 INEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRA 405 L+G VA + + T+ L E + +D+L+A +A Sbjct: 322 -------------------------CLSGKVATILLRGATDHELDELERAIEDALNAVKA 356 Query: 406 A-SDEGIVPGGGIALVRAAQALS--VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESE 462 A DEG+VPGGG A + ++AL K + + GIE +AL R + +NAG + Sbjct: 357 ALKDEGVVPGGGAAELELSRALREYAKSVSGKEQLGIEAFAEALEVIPRTLAENAGLDPI 416 Query: 463 LIVSKIQE--SKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAV 520 +++K++ K N G +A GDM E GIIDP+KV R+AL+SA +A ++L + + Sbjct: 417 EVLAKLKAAHKKGNNLGIDADTGEIGDMKEAGIIDPLKVKRSALKSAVEVASLILTIDQI 476 Query: 521 VVDAP 525 + P Sbjct: 477 IKAKP 481 >gnl|CDD|73189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.. Length = 464 Score = 333 bits (856), Expect = 8e-92 Identities = 171/545 (31%), Positives = 253/545 (46%), Gaps = 107/545 (19%) Query: 4 KDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFK 63 K+ + G AR + LA+AVK TLGPKG ++ +S G P +T DG T+ K I + Sbjct: 1 KEREFGEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVE 60 Query: 64 NHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLA 123 + A+++ +VA + +D GDGTTT LA + E K + AG++P +I RG + A Sbjct: 61 H----PAAKLLVEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKA 116 Query: 124 VQEVVEYLK--ANHKKVGSREEIIQVATISAN------GDREIGEKIAYAMEQIGP---- 171 V++ +E LK A V REE+++VAT S N GD +GE + A+ ++G Sbjct: 117 VEKALEILKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGD 176 Query: 172 --HGIITIDQAKTAT-TEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKIS 228 G+I +++ K + + +V GM D+GY+SPY M +EN IL+ D K+ Sbjct: 177 VDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPY-------MPKRLENAKILLLDCKLE 229 Query: 229 ALQPLLPILESATQSGRPLCIIAED-VEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKE 287 + +IAE ++ +AL L ++AV+ RKE Sbjct: 230 YV------------------VIAEKGIDDEALHYLAKLG------IMAVRR-----VRKE 260 Query: 288 VLRDIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSK----DDTTIVGGNGPSERIE 343 L IA GAT++S LE T DLG+A V +K T I G G Sbjct: 261 DLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKG------ 309 Query: 344 GRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDAT 403 G VA + + TE L E + D+L A Sbjct: 310 ------------------------------GKVATILLRGATEVELDEAERSLHDALCAV 339 Query: 404 RAA-SDEGIVPGGGIALVRAAQALS--VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDE 460 RAA D GIVPGGG A + ++AL K + GIE AL R + +NAG + Sbjct: 340 RAAVEDGGIVPGGGAAEIELSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLD 399 Query: 461 SELIVSKIQESKTA---NYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLIT 517 +V+K++ N G + + DM E GIIDP+KV R AL+SA A ++L Sbjct: 400 PIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATEAASLILTI 459 Query: 518 EAVVV 522 + ++V Sbjct: 460 DDIIV 464 >gnl|CDD|73350 cd03333, chaperonin_like, chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.. Length = 209 Score = 102 bits (257), Expect = 2e-22 Identities = 73/286 (25%), Positives = 110/286 (38%), Gaps = 94/286 (32%) Query: 141 REEIIQVATISAN-----GDREIGEKIAYAMEQIGP------HGIITIDQAKTAT-TEVR 188 RE ++QVAT S N D +G+ + A+ ++GP G+I +++ + + Sbjct: 1 RELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSLEDSE 60 Query: 189 VVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESATQSGRPLC 248 +V G+ D+GY SPY M +EN IL+ D + + Sbjct: 61 LVVGVVFDKGYASPY-------MPKRLENAKILLLDCPLEYV------------------ 95 Query: 249 IIAED-VEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVISEEIGL 307 +IAE ++ AL L + +AV+ +KE L IA GAT++S Sbjct: 96 VIAEKGIDDLALHYLAKAGI------MAVRR-----VKKEDLERIARATGATIVSS---- 140 Query: 308 KLEKATIADLGSAKKVVMSKD----DTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRD 363 LE T DLG+A+ V +K T I G G Sbjct: 141 -LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKG-------------------------- 173 Query: 364 KLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDE 409 G A + + TE L E K D+L A RAA +E Sbjct: 174 ----------GKAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 >gnl|CDD|48160 cd03343, cpn60, cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.. Length = 517 Score = 97.2 bits (242), Expect = 9e-21 Identities = 128/534 (23%), Positives = 216/534 (40%), Gaps = 91/534 (17%) Query: 22 TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81 +AEAV+ TLGPKG ++ +S G +T DG T+ K + ++ A+M+ +VA Sbjct: 26 AVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHP----AAKMLVEVAKTQ 81 Query: 82 EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVG-- 139 ++ GDGTTTA LA + + + ++P I G LA ++ +E L KV Sbjct: 82 DEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPD 141 Query: 140 SREEIIQVATISANG-----DREIGEKIAY-----AMEQIGPHGIITIDQAKT------A 183 ++ + ++A S G ++ + E+ ++ +D K + Sbjct: 142 DKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGS 201 Query: 184 TTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPI---LESA 240 + +++G+ ID+ + P M VEN I + D + + + + S Sbjct: 202 VDDTELIRGIVIDKEVVHP-------GMPKRVENAKIALLDAPLEVKKTEIDAKIRITSP 254 Query: 241 TQSGRPLCIIAEDVEG--DALATLVVNRVRC--GLPVLA----VKAPAFGDRR--KEVLR 290 Q L ++ D +A N V C G+ LA KA RR K + Sbjct: 255 DQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDME 314 Query: 291 DIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQ 350 +A GA +++ ++ T DLG A+ V Sbjct: 315 KLARATGAKIVT-----NIDDLTPEDLGEAELV--------------------------- 342 Query: 351 KAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEG 410 + + D + K V +L G TE + E + +D+L A ++G Sbjct: 343 ----EERKVGDDKMVFVEGCKNPKAVTILLRGG-TEHVVDELERALEDALRVVADALEDG 397 Query: 411 -IVPGGGIALVRAAQAL-----SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAG-DESEL 463 +V GGG + A+ L SV G +Q A +E AL R + +NAG D + Sbjct: 398 KVVAGGGAVEIELAKRLREYARSVGG--REQLA-VEAFADALEEIPRTLAENAGLDPIDT 454 Query: 464 IVS--KIQESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMML 515 +V E N G + DM E G+I+P++V + A++SA A M+L Sbjct: 455 LVELRAAHEKGNKNAGLDVYTGEVVDMLEKGVIEPLRVKKQAIKSATEAATMIL 508 >gnl|CDD|73353 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.. Length = 484 Score = 74.8 bits (184), Expect = 6e-14 Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 32/232 (13%) Query: 12 ARDAIAYGVN-----TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHF 66 R A VN L + +K LGPKG ++ + G ++TKDG + + ++ Sbjct: 8 LRRGQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPT 67 Query: 67 HEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQE 126 A MI AT +D +GDGTT+ L + + +Y+ G++P I G +LA + Sbjct: 68 ----ASMIARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNK 123 Query: 127 VVEYL---KANHKKVGSREEIIQVA--TISANGDREIGEKIAYAM-----------EQIG 170 +++L K + RE ++ VA ++ ++ +++ + E I Sbjct: 124 ALKFLESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPID 183 Query: 171 PHGIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILI 222 H + + + ++ ++++G+ +D G P M VEN YIL Sbjct: 184 LHMVEIMQMQHKSDSDTKLIRGLVLDHGARHP-------DMPKRVENAYILT 228 Score = 44.0 bits (104), Expect = 1e-04 Identities = 51/204 (25%), Positives = 73/204 (35%), Gaps = 52/204 (25%) Query: 367 ERLAKLAGGVAVLEVGDVTEAALG------------EK---------------------- 392 ERL GGVA+ V D++ LG EK Sbjct: 280 ERLTLACGGVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNPKSCTILIKGPND 339 Query: 393 ------KDRYQDSLDATRAA-SDEGIVPGGGIALVRAAQAL-----SVKGDNEDQCAGIE 440 KD +D L A + A D+ +VPG G V L SVKG + G++ Sbjct: 340 HTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKSVKGKAK---LGVQ 396 Query: 441 IVRKALSYPCRQIIKNAG-DESELIVSKIQESKTAN--YGYNAQKSVFGDMFEMGIIDPV 497 AL + + +N+G D E +V E G + D GI D Sbjct: 397 AFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNY 456 Query: 498 KVVRNALQSAGSLAGMMLITEAVV 521 V R L SA +A +L+ + ++ Sbjct: 457 SVKRQILHSATVIASQLLLVDEII 480 >gnl|CDD|48153 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.. Length = 517 Score = 68.0 bits (166), Expect = 7e-12 Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 6/137 (4%) Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKG--RCVIIGNSFGAPRVTKDGVTVAKSISFKNHF 66 G AR + G + + VK TLGPKG + + G VT DG T+ KSI N Sbjct: 11 GETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDN-- 68 Query: 67 HEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQE 126 A+++ D++ +D GDGTT+ T LA + E K V ++P I G +A Sbjct: 69 --PAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAA 126 Query: 127 VVEYLKANHKKVGSREE 143 E L ++ S EE Sbjct: 127 AREALLSSAVDHSSDEE 143 Score = 44.8 bits (106), Expect = 6e-05 Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 6/148 (4%) Query: 385 TEAALGEKKDRYQDSLDA-TRAASDEGIVPGGGIALVRAAQALSVKGDNED--QCAGIEI 441 ++ L E + D+L + D +V GGG + + A+A+ + IE Sbjct: 369 SQQILDEAERSLHDALCVLAQTVKDTRVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEA 428 Query: 442 VRKALSYPCRQIIKNAGDESELIVSKIQESKTA---NYGYNAQKSVFGDMFEMGIIDPVK 498 KAL I NAG +S +V++++ + G + +K GDM E+GI + K Sbjct: 429 FAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGTVGDMKELGITESFK 488 Query: 499 VVRNALQSAGSLAGMMLITEAVVVDAPK 526 V R L SA A M+L + ++ AP+ Sbjct: 489 VKRQVLLSASEAAEMILRVDDIIKCAPR 516 >gnl|CDD|35584 KOG0363, KOG0363, KOG0363, Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]. Length = 527 Score = 66.9 bits (163), Expect = 1e-11 Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 11/147 (7%) Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKG--RCVIIGNSFGAPRVTKDGVTVAKSISFKNHF 66 G AR + G + + VK TLGPKG + + G VT DG T+ KSI N Sbjct: 16 GENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDN-- 73 Query: 67 HEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQE 126 A+++ D++ +D GDGTT+ T LA + E K V ++P I G +A Sbjct: 74 --PAAKVLVDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAA 131 Query: 127 VVEYLKA-----NHKKVGSREEIIQVA 148 +E L + K RE+++++A Sbjct: 132 ALEALTKSSIDNSSDKEKFREDLLKIA 158 Score = 47.3 bits (112), Expect = 1e-05 Identities = 37/151 (24%), Positives = 71/151 (47%), Gaps = 6/151 (3%) Query: 385 TEAALGEKKDRYQDSLDA-TRAASDEGIVPGGGIALVRAAQALSVKGDNED--QCAGIEI 441 T+ L E + D+L + + +V GGG + + A+A+ + + IE Sbjct: 374 TQQILDEAERSLHDALCVLAQTVKESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEA 433 Query: 442 VRKALSYPCRQIIKNAGDESELIVSKIQE---SKTANYGYNAQKSVFGDMFEMGIIDPVK 498 +AL I NAG +S +V++++ + G + + GDM E+GI++ +K Sbjct: 434 FARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEIGDMRELGIVESLK 493 Query: 499 VVRNALQSAGSLAGMMLITEAVVVDAPKDET 529 V + + SA A M+L + ++ AP++ Sbjct: 494 VKQAVVSSASEAAEMILRVDNIIKAAPRERE 524 >gnl|CDD|35580 KOG0359, KOG0359, KOG0359, Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]. Length = 520 Score = 65.4 bits (159), Expect = 4e-11 Identities = 116/525 (22%), Positives = 206/525 (39%), Gaps = 65/525 (12%) Query: 22 TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81 L + LGPKG ++ + G ++ KDG + K + ++ A +I VAT Sbjct: 28 GLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHP----TASLIAKVATAQ 83 Query: 82 EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVGSR 141 +D +GDGTT+ L + + +Y++ GL+P I G + A + +E+L+ ++V R Sbjct: 84 DDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREV-DR 142 Query: 142 EEIIQVA--TISANGDREIGEKIAYAM-----------EQIGPHGIITIDQAKTATTEVR 188 E + VA ++ E+ + + + E I + ++ + + Sbjct: 143 ETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTS 202 Query: 189 VVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLP---ILESATQSGR 245 +VQG+ +D G P M VE+ YILI + + +P + +A + Sbjct: 203 LVQGLVLDHGARHP-------DMPRRVEDAYILICNVSLEYEKPEINSGFFYSTAEEREV 255 Query: 246 PLCIIAEDVEGDALATLVVNRVRCGLPVLAVKA--PAFGDRRKEVLRDIAAVVGATVISE 303 + + ++ + + R C V+ K P D A G + Sbjct: 256 LVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSL--------DSLAKSGILALRR 307 Query: 304 EIGLKLEKATIADLGSAKKVVMSKDDTT--IVGGNGP-SERIEGRINEIQKAIEDTKSDY 360 +E+ +A G A V S DD T +G G E G E IE + Sbjct: 308 AKRRNMERLVLACGGEA---VNSVDDLTPDYLGYAGLVYEYTLG--EEKFTFIEKCNN-- 360 Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAA-SDEGIVPGGGIAL 419 V +L G + + + KD +D L A + D+ +PG G Sbjct: 361 ------------PSSVTILIKGP-NKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAFE 407 Query: 420 VRAAQALSVKGDNEDQCA--GIEIVRKALSYPCRQIIKNAG-DESELIVSKIQESKTANY 476 V + L + A G++ AL + + KN+G DE E +VS +E + Sbjct: 408 VALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLR 467 Query: 477 GYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVV 521 G + + D GI D V + L+S +A +L+ + ++ Sbjct: 468 GLDLFRGEECDPSRKGIYDNYSVKKQLLRSEAVIATNLLLVDEII 512 >gnl|CDD|48157 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.. Length = 522 Score = 63.7 bits (155), Expect = 1e-10 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 4/110 (3%) Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82 +A+AV+ TLGP+G +I + G ++ DG T+ K + + H A+ + D+A + + Sbjct: 28 IADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLL---DIVHPA-AKTLVDIAKSQD 83 Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLK 132 GDGTT+ LA E + ++ G++P I RG A+Q +E +K Sbjct: 84 AEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIK 133 Score = 43.7 bits (103), Expect = 1e-04 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 404 RAASDEGIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDE 460 RA ++ +V GGG + L + + S + Q I KAL RQ+ NAG + Sbjct: 394 RAIKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLV-INAFAKALEIIPRQLCDNAGFD 452 Query: 461 SELIVSKIQ----ESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMML 515 + I++K++ + YG + D FE + +P V NAL +A A ++L Sbjct: 453 ATDILNKLRQKHAQGGGKWYGVDINNEGIADNFEAFVWEPSLVKINALTAATEAACLIL 511 >gnl|CDD|73352 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.. Length = 472 Score = 63.3 bits (154), Expect = 2e-10 Identities = 100/541 (18%), Positives = 199/541 (36%), Gaps = 125/541 (23%) Query: 20 VNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVAT 79 L++ + + GP G ++ N VT D T+ + + + H A+++ + Sbjct: 17 CKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQ---HPA-AKLLVMASQ 72 Query: 80 NTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLK------- 132 E+ GDGT LA + + + + GL+P +I G + A+++ +E L+ Sbjct: 73 MQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKI 132 Query: 133 ANHKKVGSREEIIQVATISANGDRE--IGEKIAYAMEQIGPHGIITIDQAKTATTEVRVV 190 + + + ++ A S E + +A A + P I + +RVV Sbjct: 133 EDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFN-----VDNIRVV 187 Query: 191 Q--GMQIDRGYISPYFVTSTERMTA--EVENPYILIY----DKKISALQPLLPILESATQ 242 + G ++ + V E + V+ + ++ D ++ Sbjct: 188 KILGGSLEDSKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDIGVN-------------- 233 Query: 243 SGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI- 301 I+A GD LA N+ ++ +K + K LR + VGAT + Sbjct: 234 -----VIVAGGSVGD-LALHYCNKYG----IMVIKINS-----KFELRRLCRTVGATPLP 278 Query: 302 ------SEEIGLKLEKATIADLGSAKKVVMSKDD------TTIVGGNGPSERIEGRINEI 349 EEIG + + ++G K VV ++ T ++ G + ++++ Sbjct: 279 RLGAPTPEEIG-YCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGA-----TQNILDDV 332 Query: 350 QKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDE 409 ++AI+D GV V + D Sbjct: 333 ERAIDD-------------------GVNVFKS-----------------------LTKDG 350 Query: 410 GIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVS 466 VPG G I L + + K +Q A I+ +A R + +NAG ++ ++S Sbjct: 351 RFVPGAGATEIELAKKLKEYGEKTPGLEQYA-IKKFAEAFEVVPRTLAENAGLDATEVLS 409 Query: 467 KI-----QESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVV 521 ++ + +K+A + D E GI D + + A++ A A +L + ++ Sbjct: 410 ELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIKLATEAAVTVLRVDQII 469 Query: 522 V 522 + Sbjct: 470 M 470 >gnl|CDD|48155 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.. Length = 515 Score = 63.3 bits (154), Expect = 2e-10 Identities = 39/133 (29%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82 +A+A++ +LGP+G +I G +T DG T+ K + + H A+M+ +++ + Sbjct: 20 VADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQM---SVLHPA-AKMLVELSKAQD 75 Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVG--S 140 +GDGTT+ LA A+ + + G++P I +A ++ VE L + V Sbjct: 76 IEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLND 135 Query: 141 REEIIQVATISAN 153 RE +I+ AT S N Sbjct: 136 RESLIKSATTSLN 148 Score = 33.3 bits (76), Expect = 0.20 Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 11/114 (9%) Query: 410 GIVPGGG-----IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELI 464 ++PGGG IAL + A ++ G + C + AL + +NAG I Sbjct: 397 ALIPGGGAPEIEIALQLSEWARTLTGVEQ-YC--VRAFADALEVIPYTLAENAGLNPISI 453 Query: 465 VSKIQE---SKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMML 515 V++++ N G N +K ++ E ++ P+ V +A+ A M+L Sbjct: 454 VTELRNRHAQGEKNAGINVRKGAITNILEENVVQPLLVSTSAITLATETVRMIL 507 >gnl|CDD|35579 KOG0358, KOG0358, KOG0358, Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]. Length = 534 Score = 61.9 bits (150), Expect = 4e-10 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 6/154 (3%) Query: 2 AAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSIS 61 A KD + R + +A+A++ +LGPKG +I G +T DG T+ K ++ Sbjct: 17 AFKDKEKPEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMN 76 Query: 62 FKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGID 121 A+M+ +++ + +GDGTT+ LA A+ K + G++P I Sbjct: 77 V----LHPAAKMLVELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQ 132 Query: 122 LAVQEVVEYLKANHKKV--GSREEIIQVATISAN 153 A ++ V+ L V RE +I+ AT S N Sbjct: 133 SAAKKAVDILDEMSVPVELSDRESLIKSATTSLN 166 Score = 33.4 bits (76), Expect = 0.18 Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 6/175 (3%) Query: 353 IEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRA-ASDEGI 411 +E+T S + +K + AG + + + L E + D+L R + Sbjct: 357 VEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRAL 416 Query: 412 VPGGGIALVRAAQALSVKGDNEDQCAG--IEIVRKALSYPCRQIIKNAGDESELIVSKIQ 469 + GGG + A LS + AL + +NAG V++++ Sbjct: 417 IAGGGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELR 476 Query: 470 ---ESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVV 521 N G N +K ++ E ++ P+ V +A+ A +L + +V Sbjct: 477 NRHAQGEKNAGINVRKGGITNILEENVVQPLLVSISAITLATETVRSILKIDDIV 531 >gnl|CDD|35582 KOG0361, KOG0361, KOG0361, Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]. Length = 543 Score = 59.6 bits (144), Expect = 2e-09 Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 4/110 (3%) Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82 +AEA++ TLGP+G +I +S G ++ DG T+ K + + H A+ + D+A + + Sbjct: 32 VAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLL---DIVHPA-AKTLVDIARSQD 87 Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLK 132 GDGTT+ LA E + ++ G++P I R A Q VE +K Sbjct: 88 AEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIK 137 Score = 53.0 bits (127), Expect = 2e-07 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 9/149 (6%) Query: 404 RAASDEGIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDE 460 RA ++ +V GGG + L + + S + Q I KAL RQ+ NAG + Sbjct: 398 RALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQ-LFINAYAKALEVIPRQLCDNAGFD 456 Query: 461 SELIVSKIQESKT---ANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLIT 517 + I++K+++ YG + D FE + +P V NA+ +A A ++L Sbjct: 457 ATNILNKLRQRHAQGEKWYGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSV 516 Query: 518 EAVVVDAPKDETASPQMPAGGGMGGGMGG 546 + + PK ++A P AG G G G Sbjct: 517 DETIK-NPKSQSAPP-SAAGRGRGRGRPR 543 >gnl|CDD|48152 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.. Length = 527 Score = 58.7 bits (142), Expect = 4e-09 Identities = 125/562 (22%), Positives = 212/562 (37%), Gaps = 117/562 (20%) Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHE 68 G R +A VK +LGP G ++ + G +T DG T+ K + ++ Sbjct: 6 GQDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP--- 62 Query: 69 VGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVV 128 A+++ ++A + GDGTT+ +A + + V ++P I G LA +E V Sbjct: 63 -AAKILVELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAV 121 Query: 129 EYLKANHKKVGS---REEIIQVATIS-----ANGDREIGEKIAY----AMEQIGPHG--- 173 +Y+K + +E +I VA S D + + A++ G Sbjct: 122 KYIKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTK 181 Query: 174 --IITIDQAKT---ATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKIS 228 I ++ K + E +V G ++ S + M V+N I D + Sbjct: 182 YPIKAVNILKAHGKSAKESYLVNGYALNCTRAS-------QGMPTRVKNAKIACLDFNLQ 234 Query: 229 ALQPLLPI---------LESATQSGRPLCIIAEDVEG--DALATLVVNRVRCGLPVLAVK 277 + L + LE Q R I E ++ A A +V+ G+ + +K Sbjct: 235 KTKMKLGVQVVVTDPEKLEKIRQ--RESDITKERIKKILAAGANVVL--TTGGIDDMCLK 290 Query: 278 ----APAFGDRR--KEVLRDIAAVVGATVISEEIGLKLEKA-TIADLGSAKKVVMSK--D 328 A A RR KE LR IA GAT++S L+ E+ + LG A++VV + D Sbjct: 291 YFVEAGAMAVRRVKKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVVQERIGD 350 Query: 329 DTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAA 388 D I+ G +R I I +D+ D+++ L Sbjct: 351 DELIL-IKGTKKRSSASI------ILRGANDFMLDEMERSL------------------- 384 Query: 389 LGEKKDRYQDSLDA-TRAASDEGIVPGGGIALVRAAQALSVKGDN-------EDQCAGIE 440 D+L R +VPGGG ALS+ +N +Q A E Sbjct: 385 --------HDALCVVKRTLESNSVVPGGGAVET----ALSIYLENFATTLGSREQLAIAE 432 Query: 441 IVRKALSYPCRQIIKNAGDESELIVSKI-----------QESKTANYGYNAQKSVFGDMF 489 L P + + NA ++ +V+K+ + YG + D Sbjct: 433 FAEALLVIP-KTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKWYGLDLINGKVRDNL 491 Query: 490 EMGIIDP----VKVVRNALQSA 507 E G+++P +K ++ A ++A Sbjct: 492 EAGVLEPTVSKIKSLKFATEAA 513 >gnl|CDD|48156 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.. Length = 526 Score = 56.4 bits (136), Expect = 2e-08 Identities = 37/134 (27%), Positives = 71/134 (52%), Gaps = 8/134 (5%) Query: 22 TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81 ++A ++ +LGP+G I+ + G VT DG T+ + + + A+++ +++ + Sbjct: 34 SVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQI----AKLLVELSKSQ 89 Query: 82 EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVG-- 139 +D GDGTT LA A+ + K + G++P+ I G + A + VE+L+ K+ Sbjct: 90 DDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFS 149 Query: 140 --SREEIIQVATIS 151 ++E +IQ A S Sbjct: 150 PDNKEPLIQTAMTS 163 Score = 30.6 bits (69), Expect = 1.3 Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 13/142 (9%) Query: 391 EKKDRYQDSLDATRA-ASDEGIVPGGGIALVRAAQALSVKGDNEDQCAGIE--IVR---K 444 E K D+L R D IV GGG A + + A+ D+C+GIE +R Sbjct: 388 EAKRSLHDALCVVRNLIRDNRIVYGGGAAEISCSLAVE---KAADKCSGIEQYAMRAFAD 444 Query: 445 ALSYPCRQIIKNAGDESELIVSKIQ----ESKTANYGYNAQKSVFGDMFEMGIIDPVKVV 500 AL + +N+G +S+++ + K + G + DM E + + + Sbjct: 445 ALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDCLGRGTNDMKEQKVFETLISK 504 Query: 501 RNALQSAGSLAGMMLITEAVVV 522 + + A + M+L + V+V Sbjct: 505 KQQILLATQVVKMILKIDDVIV 526 >gnl|CDD|35583 KOG0362, KOG0362, KOG0362, Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]. Length = 537 Score = 54.5 bits (131), Expect = 6e-08 Identities = 110/543 (20%), Positives = 204/543 (37%), Gaps = 92/543 (16%) Query: 20 VNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVAT 79 V LA ++ GP GR ++ N G VT D T+ + + H A+++ + Sbjct: 35 VRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEV-EH---PAAKLLVEATQ 90 Query: 80 NTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKA----NH 135 E+ GDGT LA A+ + + + GL P +I G + A +E +E L + Sbjct: 91 MQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSI 150 Query: 136 KKVGSREEIIQVATISANGDRE--IGEKIAYAMEQIGPHGIITIDQAKTAT------TEV 187 + +E ++ +S E + + +A A I P +D + + Sbjct: 151 GDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLEDS 210 Query: 188 RVVQGMQIDRG---------------YISPYFVTSTE-RMTAEVENPYILI-YDKKISAL 230 VV GM R + P+ + TE + T ++N L+ + K AL Sbjct: 211 CVVCGMVFKRDPEGEVKSAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEAL 270 Query: 231 QPLLPILESATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLR 290 L +++ +G + + V+ L L N+ + ++ ++ + K LR Sbjct: 271 --LEEQVKAIADAGVKVIVSGGKVDEMTLHFL--NKYK----IMVLQINS-----KFDLR 317 Query: 291 DIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQ 350 + VGAT + +L +LG V Q Sbjct: 318 RLCRTVGATALP-----RLFPPAPEELGYCDSV------------------------STQ 348 Query: 351 KAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRA-ASDE 409 + + + + R+A + A + D E A+ D ++ +A SD Sbjct: 349 EIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAV-------DDGVNTYKALCSDS 401 Query: 410 GIVPGGGIALVRAAQALSVKGD---NEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVS 466 ++PG G + A+ +S +G Q A I+ +AL + + +NAG +++ Sbjct: 402 RLLPGAGATEIELAKQISSRGATLPGLKQLA-IKKFAEALEVLPKTLAENAGLAVTEVIA 460 Query: 467 KI----QESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVV 522 K+ Q K A+ D+ E GI D + V A++ A A +L + +++ Sbjct: 461 KLYAVHQGGKNLGMDIEAEGGTI-DVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIM 519 Query: 523 DAP 525 Sbjct: 520 AKK 522 >gnl|CDD|35581 KOG0360, KOG0360, KOG0360, Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]. Length = 545 Score = 46.5 bits (110), Expect = 2e-05 Identities = 115/549 (20%), Positives = 195/549 (35%), Gaps = 96/549 (17%) Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHE 68 G R +A VK +LGP G ++ + G +T DG T+ +S H Sbjct: 17 GERVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATI---LSLLEVEHP 73 Query: 69 VGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVV 128 ++ ++A ++ GDGTT+ +A + + V ++P I G LA E V Sbjct: 74 AAKVLV-ELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAV 132 Query: 129 EYLKANHKKVG---SREEIIQVA-------TISANGDREIGEKIAYAMEQIGPHGIITID 178 +Y+ K + +I +A I + D E + A+ + I+ I+ Sbjct: 133 KYITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFF-TEMVVDALLAV---KILDIN 188 Query: 179 -QAKTATTEVRVVQ---GMQIDRGYISPYFVTSTE---RMTAEVENPYILIYDKKISALQ 231 + V +++ QI+ + Y + + M ++N I D + + Sbjct: 189 GEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTK 248 Query: 232 PLLPILESATQSGRPLCIIAEDVE-----------GDALATLVVNRVRCGLPVLAVKAPA 280 L + + I + + A L + V+A A Sbjct: 249 MKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGA 308 Query: 281 FGDRR--KEVLRDIAAVVGATVISEEIGLKLEKA-TIADLGSAKKVVMSK--DDTTIVGG 335 RR KE L+ IA GAT++S L+ E+ A LGSA +VV + DD I+ Sbjct: 309 MAVRRCKKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVVQERIGDDELIL-- 366 Query: 336 NGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDR 395 I+G I +D+ L E + Sbjct: 367 ------IKGTKATSASIILRGANDF---------------------------MLDEMERS 393 Query: 396 YQDSLDATRAASDEG-IVPGGG-----IALVRAAQALSVKGDNEDQCAGIEIVRKALSYP 449 D+L + + +VPGGG +++ A SV G E A E LS P Sbjct: 394 LHDALCVLKRTLESKSVVPGGGAVETALSIYLENFATSV-GSREQL-AIAEFAAALLSIP 451 Query: 450 CRQIIKNAGDESELIVSKIQESKTA-----------NYGYNAQKSVFGDMFEMGIIDPVK 498 + + NA +S +V+K++ + YG + D G +P Sbjct: 452 -KTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYGLDLINGKIRDNKSAGSFEPPI 510 Query: 499 VVRNALQSA 507 V +L+ A Sbjct: 511 VKVKSLKFA 519 >gnl|CDD|73351 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.. Length = 480 Score = 43.7 bits (103), Expect = 1e-04 Identities = 49/238 (20%), Positives = 100/238 (42%), Gaps = 35/238 (14%) Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHE 68 G A+ T+A+ ++ LGP+ ++ + G +T DG + + I H Sbjct: 14 GRKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVA---HP 70 Query: 69 VGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVV 128 MI +++ ++ GDGTT+ LA I ++ G++P I + A+++ + Sbjct: 71 AAKSMI-ELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDAL 129 Query: 129 EYLK--ANHKKVGSREEIIQV-----ATISANGDREIGEKIAY------AMEQIGPHGII 175 + L+ + V R +++++ T + ++ +A A+E+ G Sbjct: 130 KILEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENG--RKK 187 Query: 176 TIDQAKTATTE---------VRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYD 224 ID + A E RV+ G+ +++ P +M +ENP I++ D Sbjct: 188 EIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHP-------KMRRRIENPRIVLLD 238 Score = 36.3 bits (84), Expect = 0.021 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 7/140 (5%) Query: 389 LGEKKDRYQDSLDATR-AASDEGIVPGGGIALVRAAQALSVKGDNED--QCAGIEIVRKA 445 L E + QD++ R + +VPGGG + + ALS K + + + + V A Sbjct: 339 LNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASA 398 Query: 446 LSYPCRQIIKNAGDESELIVSKIQESKTAN----YGYNAQKSVFGDMFEMGIIDPVKVVR 501 L R + +N G +++++ +G + + DM E+GI DP+ V Sbjct: 399 LEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKA 458 Query: 502 NALQSAGSLAGMMLITEAVV 521 ++A A M+L + +V Sbjct: 459 QTYKTAIEAACMLLRIDDIV 478 >gnl|CDD|35578 KOG0357, KOG0357, KOG0357, Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]. Length = 400 Score = 40.4 bits (94), Expect = 0.001 Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 13/153 (8%) Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60 KD G A + +A ++ +LGPKG ++ + G VT DGV Sbjct: 18 QERKDRLFGLDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDGV------ 71 Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120 A++I ++ + +D GDGTT LA A+ + + + G++P+ I +G Sbjct: 72 -------HQIAKLIVILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGY 124 Query: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISAN 153 + A VE+L E I Q+ AN Sbjct: 125 EKAKVVAVEHLDEISDPFEFEEMIQQIKETGAN 157 Score = 31.9 bits (72), Expect = 0.49 Identities = 32/146 (21%), Positives = 54/146 (36%), Gaps = 9/146 (6%) Query: 391 EKKDRYQDSLDATRA-ASDEGIVPGGGIALVRAAQALS---VKGDNEDQCAGIEIVRKAL 446 E K D+L R D +V GGG A + A A+S K +Q A AL Sbjct: 256 EAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYA-FRAFADAL 314 Query: 447 SYPCRQIIKNAGDESELIVSKI----QESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRN 502 + +N+G + +S + + G + DM E +I+ + + Sbjct: 315 ESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQ 374 Query: 503 ALQSAGSLAGMMLITEAVVVDAPKDE 528 + A + M+L + V +E Sbjct: 375 QISLATQMVRMILKIDDVRKPGESEE 400 >gnl|CDD|35585 KOG0364, KOG0364, KOG0364, Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]. Length = 527 Score = 37.7 bits (87), Expect = 0.009 Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 28/220 (12%) Query: 22 TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81 +A+ ++ LGP+ ++ + G +T DG + + I H MI +++ Sbjct: 30 AIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVA---HPAAKSMI-ELSRTQ 85 Query: 82 EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVGSR 141 ++ GDGTT+ LA + N ++ G++P I + A+++ + L V + Sbjct: 86 DEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVK 145 Query: 142 EEI-------IQVATISANGDREIGEKIAY-AMEQIGPHGIITIDQAKTATTE------- 186 ++ V T + ++ +A A++ +G ID + A E Sbjct: 146 DQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLL 205 Query: 187 --VRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYD 224 V++G+ I++ P +M +ENP I++ D Sbjct: 206 EDSCVLKGVMINKDVTHP-------KMRRAIENPRIVLLD 238 >gnl|CDD|144567 pfam01026, TatD_DNase, TatD related DNase. This family of proteins are related to a large superfamily of metalloenzymes. TatD, a member of this family has been shown experimentally to be a DNase enzyme. Length = 255 Score = 33.4 bits (77), Expect = 0.19 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 7/73 (9%) Query: 66 FHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQ 125 E G + V T+ +D L A G+ Y G++P + + ++ Sbjct: 23 AREAGVTAVVVVGTDLKDF-------ERALELARKYPGKVYAAVGVHPHEADEASEEVLE 75 Query: 126 EVVEYLKANHKKV 138 + + A H KV Sbjct: 76 ALEKLKLAEHPKV 88 >gnl|CDD|146057 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a molecular chaperone required for the activity of numerous eukaryotic protein kinases. This domain corresponds to the N terminal domain which binds predominantly to protein kinases and is found N terminal to the Hsp (Heat shocked protein) 90-binding domain pfam08565. Expression of a construct consisting of only the N-terminal domain of Saccharomyces pombe Cdc37 results in cellular viability. This indicates that interactions with the cochaperone Hsp90 may not be essential for Cdc37 function. Length = 172 Score = 30.5 bits (69), Expect = 1.3 Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Query: 303 EEIGLKLEKATIADLGSAKKVVMS----KDDTTIVGGNGP--SERIEGRINEIQKAIEDT 356 E + L + LGS++ V+ S D V P +E +E ++++ +++ Sbjct: 63 ERVDKLLSELKEESLGSSQAVMKSLNENFTDKENVEPEQPTYNEMVEDLFDQVKDEVDEK 122 Query: 357 KSDYDRDKLKERLAKLA 373 ++L++ KL Sbjct: 123 NGAALIEELQKHRDKLK 139 >gnl|CDD|173932 cd08173, Gro1PDH, Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosphate backbone [sn- glycerol-1-phosphate (G-1-P)] that is the mirror image structure of the bacterial or eukaryal counterpart [sn-glycerol- 3-phosphate (G-3-P)]. The absolute stereochemistry of the glycerol moiety in all archaeal polar lipids is opposite to that of glycerol ester lipids in bacteria and eukarya. This protein family is only found in Archaea. Length = 339 Score = 29.2 bits (66), Expect = 3.3 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%) Query: 287 EVLRDIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSER 341 +RD VGA ++E+G+ E I L A K+ + TI+G G + Sbjct: 278 RRIRDALKKVGAPTTAKELGIDDEIV-IEALTIAHKI--RPERYTILGEVGLTRE 329 >gnl|CDD|37230 KOG2019, KOG2019, KOG2019, Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only, Posttranslational modification, protein turnover, chaperones]. Length = 998 Score = 28.8 bits (64), Expect = 4.0 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 391 EKKDRYQDSLDATRAASDEGIVPGG-GIALVRAAQALSVKGDNEDQCAGIEIVR 443 +D+++ + + + GI G G A R+A L+ G +Q G+ + Sbjct: 680 TNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLE 733 >gnl|CDD|37219 KOG2008, KOG2008, KOG2008, BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]. Length = 426 Score = 28.6 bits (63), Expect = 5.1 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 13/97 (13%) Query: 340 ERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDS 399 R+ + ++AI+ ++ ++ K + + D EA + K Y+ S Sbjct: 162 GRMRQLEKKNKRAIKKSRPYFEL---KAKYTVQLE--QQKKTVDDLEAEVTLAKGEYKMS 216 Query: 400 LDATRAASDEGIVPGGGIALVRAAQ-ALSVKGDNEDQ 435 L SDE I R++Q A++ D E Sbjct: 217 LRNLEMISDE-------IHEERSSQSAMAPSSDGEGA 246 >gnl|CDD|109560 pfam00509, Hemagglutinin, Hemagglutinin. Hemagglutinin from influenza virus causes membrane fusion of the viral membrane with the host membrane. Fusion occurs after the host cell internalises the virus by endocytosis. The drop of pH causes release of a hydrophobic fusion peptide and a large conformational change leading to membrane fusion. Length = 550 Score = 28.1 bits (63), Expect = 7.1 Identities = 7/18 (38%), Positives = 12/18 (66%) Query: 342 IEGRINEIQKAIEDTKSD 359 +E RIN + K ++D +D Sbjct: 401 LERRINNLNKKVDDGITD 418 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.315 0.133 0.365 Gapped Lambda K H 0.267 0.0647 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 6,042,858 Number of extensions: 320280 Number of successful extensions: 877 Number of sequences better than 10.0: 1 Number of HSP's gapped: 811 Number of HSP's successfully gapped: 71 Length of query: 551 Length of database: 6,263,737 Length adjustment: 99 Effective length of query: 452 Effective length of database: 4,124,446 Effective search space: 1864249592 Effective search space used: 1864249592 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 60 (27.1 bits)