RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus
Liberibacter asiaticus str. psy62]
(551 letters)
>gnl|CDD|178794 PRK00013, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 818 bits (2116), Expect = 0.0
Identities = 335/547 (61%), Positives = 413/547 (75%), Gaps = 6/547 (1%)
Query: 2 AAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSIS 61
AKDIK G AR + GVN LA+AVK TLGPKGR V++ SFGAP +TKDGVTVAK I
Sbjct: 1 MAKDIKFGEDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIE 60
Query: 62 FKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGID 121
++ F +GA+++++VA+ T D +GDGTTTAT LAQAI EG K V AG NPMD+KRGID
Sbjct: 61 LEDPFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGID 120
Query: 122 LAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAK 181
AV+ VE LK K V +EEI QVATISANGD EIG+ IA AME++G G+IT++++K
Sbjct: 121 KAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESK 180
Query: 182 TATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESAT 241
TE+ VV+GMQ DRGY+SPYFVT E+M AE+ENPYILI DKKIS +Q LLP+LE
Sbjct: 181 GFETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISNIQDLLPVLEQVA 240
Query: 242 QSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI 301
QSG+PL IIAEDVEG+ALATLVVN++R L V+AVKAP FGDRRK +L DIA + G TVI
Sbjct: 241 QSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVI 300
Query: 302 SEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYD 361
SEE+GLKLE AT+ DLG AKKVV++KD+TTIV G G E I+ R+ +I+ IE+T SDYD
Sbjct: 301 SEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYD 360
Query: 362 RDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVR 421
R+KL+ERLAKLAGGVAV++VG TE + EKKDR +D+L ATRAA +EGIVPGGG+AL+R
Sbjct: 361 REKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLR 420
Query: 422 AAQAL-SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNA 480
AA AL ++KG N D+ GI IV +AL P RQI +NAG E ++V K++ K YGYNA
Sbjct: 421 AAPALEALKGLNGDEATGINIVLRALEAPLRQIAENAGLEGSVVVEKVKNGKGKGYGYNA 480
Query: 481 QKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGGM 540
+ DM E GIIDP KV R+ALQ+A S+AG++L TEAVV D P+ + A+P M
Sbjct: 481 ATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTTEAVVADKPEKKAAAPPM-----G 535
Query: 541 GGGMGGM 547
GGGMGGM
Sbjct: 536 GGGMGGM 542
>gnl|CDD|183791 PRK12849, groEL, chaperonin GroEL; Reviewed.
Length = 542
Score = 750 bits (1938), Expect = 0.0
Identities = 327/550 (59%), Positives = 415/550 (75%), Gaps = 9/550 (1%)
Query: 2 AAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSIS 61
AK IK AR A+ GVN LA+AVK TLGPKGR V+I SFGAP +TKDGV++AK I
Sbjct: 1 MAKIIKFDEEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIE 60
Query: 62 FKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGID 121
++ F +GA+++++VA+ T D +GDGTTTAT LAQA+ EG K V AG NPMD+KRGID
Sbjct: 61 LEDPFENLGAQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGID 120
Query: 122 LAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAK 181
AV+ VVE LKA + V EEI QVATISANGD EIGE IA AME++G G+IT++++K
Sbjct: 121 KAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESK 180
Query: 182 TATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESAT 241
T TE+ V +GMQ DRGY+SPYFVT ERM A +E+P IL+ DKKIS+LQ LLP+LE
Sbjct: 181 TLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISSLQDLLPLLEKVA 240
Query: 242 QSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI 301
QSG+PL IIAEDVEG+ALATLVVN++R GL V AVKAP FGDRRK +L DIA + G TVI
Sbjct: 241 QSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVI 300
Query: 302 SEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYD 361
SE++GLKLE+ T+ DLG AK+V ++KD+TTIV G G E IE R+ +I++ IE+T SDYD
Sbjct: 301 SEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYD 360
Query: 362 RDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVR 421
R+KL+ERLAKLAGGVAV++VG TE L E+KDR +D+L+ATRAA +EGIVPGGG+AL+R
Sbjct: 361 REKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLR 420
Query: 422 AAQAL-SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNA 480
AA+AL + G N DQ AG+EIVR+AL P RQI +NAG + ++V+K+ E + +G+NA
Sbjct: 421 AAKALDELAGLNGDQAAGVEIVRRALEAPLRQIAENAGLDGSVVVAKVLELE-DGFGFNA 479
Query: 481 QKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGGM 540
+GD+ GIIDPVKV R+ALQ+A S+AG++L TEA+V D P++E G
Sbjct: 480 ATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTTEALVADKPEEEDP-------PGG 532
Query: 541 GGGMGGMDMM 550
GGMGGM M
Sbjct: 533 MGGMGGMGHM 542
>gnl|CDD|162814 TIGR02348, GroEL, chaperonin GroL. This family consists of GroEL,
the larger subunit of the GroEL/GroES cytosolic
chaperonin. It is found in bacteria, organelles derived
from bacteria, and occasionally in the Archaea. The
bacterial GroEL/GroES group I chaperonin is replaced a
group II chaperonin, usually called the thermosome in
the Archaeota and CCT (chaperone-containing TCP) in the
Eukaryota. GroEL, thermosome subunits, and CCT subunits
all fall under the scope of Pfam model pfam00118.
Length = 524
Score = 703 bits (1817), Expect = 0.0
Identities = 312/525 (59%), Positives = 398/525 (75%), Gaps = 2/525 (0%)
Query: 3 AKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISF 62
AK IK AR A+ GV+ LA+AVK TLGPKGR V++ SFGAP +TKDGVTVAK I
Sbjct: 1 AKQIKFDEEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIEL 60
Query: 63 KNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDL 122
++ F +GA+++++VA+ T D +GDGTTTAT LAQAI EG K V AG NP+++KRGI+
Sbjct: 61 EDKFENMGAQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEK 120
Query: 123 AVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAKT 182
AV+ VE LK K V ++EI QVATISAN D EIG IA AME++G G+IT++++K+
Sbjct: 121 AVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKS 180
Query: 183 ATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESATQ 242
TE+ VV+GMQ DRGYISPYFVT E+M E+ENPYILI DKKIS ++ LLP+LE Q
Sbjct: 181 LETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISNIKDLLPLLEKVAQ 240
Query: 243 SGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVIS 302
SG+PL IIAEDVEG+ALATLVVN++R L V AVKAP FGDRRK +L DIA + G VIS
Sbjct: 241 SGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQVIS 300
Query: 303 EEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDR 362
EE+GLKLE+ T+ DLG AKKV + KD+TTIV G G I+ R+ +I+ IE+T SDYDR
Sbjct: 301 EELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDR 360
Query: 363 DKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVRA 422
+KL+ERLAKLAGGVAV++VG TE + EKK R +D+L+ATRAA +EGIVPGGG+AL+RA
Sbjct: 361 EKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRA 420
Query: 423 AQAL-SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNAQ 481
A AL +KGDNED+ GI+IV++AL P RQI +NAG + ++ K++ESK N+G+NA
Sbjct: 421 AAALEGLKGDNEDEAIGIDIVKRALEAPLRQIAENAGKDGAVVAEKVKESK-GNFGFNAA 479
Query: 482 KSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPK 526
+ D+ E GIIDP KV R+ALQ+A S+AG++L TEAVV D P+
Sbjct: 480 TGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTTEAVVADKPE 524
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional.
Length = 555
Score = 698 bits (1804), Expect = 0.0
Identities = 298/542 (54%), Positives = 398/542 (73%), Gaps = 5/542 (0%)
Query: 2 AAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSIS 61
K+I+ G AR ++ G+ LA+AV TLGPKGR VII +G+P++TKDGVTVAK+I
Sbjct: 13 KGKEIRFGDEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIE 72
Query: 62 FKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGID 121
F + F VGA++IR VA+ T D +GDGTTTAT LA+AI+ EG K V AGLNPMD+KRGID
Sbjct: 73 FSDRFENVGAQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGID 132
Query: 122 LAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQAK 181
LAV+ V+E LK + V ++E+I+ VATISANGD EIG IA AM+++G G IT++ K
Sbjct: 133 LAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGK 192
Query: 182 TATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESAT 241
T E+ VV+GM DRGYISPYFVT+ + E+ENP IL+ DKKIS++Q +LPILE A
Sbjct: 193 TLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISSIQSILPILEHAV 252
Query: 242 QSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATVI 301
++ RPL IIAEDVEG+AL TL++N++R GL V AVKAP FGD RK++L+DIA + GATV+
Sbjct: 253 KNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATVV 312
Query: 302 SEE-IGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360
SE+ +GLKL+ + LGSAKKV ++KD+T I+ G G I+ R+ ++ IE T S+Y
Sbjct: 313 SEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEY 372
Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420
D++KLKERLAKL+GGVAV++VG +E + EKKDR +D+L+ATRAA +EGIVPGGG+AL+
Sbjct: 373 DKEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALL 432
Query: 421 RAAQAL-SVKGDNE---DQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANY 476
RA++ L ++ DNE DQ G++IVR AL P +QI +NAG E ++V KI E K ++
Sbjct: 433 RASKLLDKLEEDNELTPDQRTGVKIVRNALRLPTKQIAENAGVEGAVVVEKILEKKDPSF 492
Query: 477 GYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPA 536
GY+AQ + +MFE GIIDP KVVR+AL A S+A +ML TEA +VD PK++ + A
Sbjct: 493 GYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTTEAAIVDLPKEKKKNKNSAA 552
Query: 537 GG 538
Sbjct: 553 PP 554
>gnl|CDD|183792 PRK12850, groEL, chaperonin GroEL; Reviewed.
Length = 544
Score = 687 bits (1775), Expect = 0.0
Identities = 328/543 (60%), Positives = 411/543 (75%), Gaps = 3/543 (0%)
Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60
MAAK+I+ T ARD + GVN LA AVK TLGPKGR V++ SFGAPR+TKDGVTVAK I
Sbjct: 1 MAAKEIRFSTDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEI 60
Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120
++ F +GA+M+++VA+ T D +GDGTTTAT LAQAI EG K V AG+NPMD+KRGI
Sbjct: 61 ELEDKFENMGAQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGI 120
Query: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA 180
DLAV VV+ LK KKV S +EI QVATISANGD IGE IA AM+++G G+IT+++A
Sbjct: 121 DLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEA 180
Query: 181 KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA 240
KT TE+ VV+GMQ DRGY+SPYFVT+ E+M AE+E+PYIL+++KKIS LQ LLPILE+
Sbjct: 181 KTLGTELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISNLQDLLPILEAV 240
Query: 241 TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV 300
QSGRPL IIAEDVEG+ALATLVVN++R GL +AVKAP FGDRRK +L DIA + G V
Sbjct: 241 VQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQV 300
Query: 301 ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360
ISE++G+KLE T+ LG AK+V+++K++TTI+ G G + IE R+ +I+ IE+T SDY
Sbjct: 301 ISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDY 360
Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420
DR+KL+ERLAKLAGGVAV+ VG TE + EKKDR D+L ATRAA +EGIVPGGG+AL+
Sbjct: 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALL 420
Query: 421 RAAQALS-VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYN 479
RA AL +KG N D+ AGI+IVR+AL P RQI NAG E ++V K+ E N+G+N
Sbjct: 421 RARSALRGLKGANADETAGIDIVRRALEEPLRQIATNAGFEGSVVVGKVAELPG-NFGFN 479
Query: 480 AQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGG 539
AQ +GDM E GIIDP KV R ALQ A S+A +++ TEA+V +APK A G G
Sbjct: 480 AQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITTEAMVAEAPKKAAA-AAAGPGPG 538
Query: 540 MGG 542
MGG
Sbjct: 539 MGG 541
>gnl|CDD|171771 PRK12852, groEL, chaperonin GroEL; Reviewed.
Length = 545
Score = 670 bits (1729), Expect = 0.0
Identities = 320/543 (58%), Positives = 410/543 (75%), Gaps = 2/543 (0%)
Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60
MAAKD+K ARD + GV+ LA AVK TLGPKGR V+I SFGAPR+TKDGVTVAK I
Sbjct: 1 MAAKDVKFSGDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEI 60
Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120
++ F +GA+M+R+VA+ T D +GDGTTTAT LAQAI EG K V AG+NPMD+KRGI
Sbjct: 61 ELEDKFENMGAQMVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGI 120
Query: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA 180
D+AV VV+ ++ K V S EI QV TISANGD IG+ IA AM+++G G+IT+++
Sbjct: 121 DIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEEN 180
Query: 181 KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA 240
K+ TEV +V+GM+ DRGY+SPYFVT+ E+MT E+++ YIL+++KK+S LQ +LP+LE+
Sbjct: 181 KSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAV 240
Query: 241 TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV 300
QSG+PL IIAEDVEG+ALATLVVNR+R GL V AVKAP FGDRRK +L DIA + G +
Sbjct: 241 VQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQL 300
Query: 301 ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360
ISE++G+KLE T+ LG AKKVV+ K++TTIV G G IE R+ +I+ IE+T SDY
Sbjct: 301 ISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDY 360
Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420
DR+KL+ERLAKLAGGVAV+ VG TE + EKKDR +D+L+ATRAA EGIVPGGG+AL+
Sbjct: 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALL 420
Query: 421 RAAQALS-VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYN 479
RA +A+ + DN D AGI IV KAL P RQI +NAG E ++V KI E+K+ +G++
Sbjct: 421 RAKKAVGRINNDNADVQAGINIVLKALEAPIRQIAENAGVEGSIVVGKILENKSETFGFD 480
Query: 480 AQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGG 539
AQ + DM GIIDP KVVR ALQ A S+AG+++ TEA+V + PK + A+P MPAGGG
Sbjct: 481 AQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTTEAMVAELPKKD-AAPAMPAGGG 539
Query: 540 MGG 542
MGG
Sbjct: 540 MGG 542
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 667 bits (1723), Expect = 0.0
Identities = 327/542 (60%), Positives = 413/542 (76%), Gaps = 3/542 (0%)
Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60
MAAK++K AR+ + GVN LA+AVK TLGPKGR V+I SFGAP +T DGVT+AK I
Sbjct: 1 MAAKEVKFHVEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEI 60
Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120
++ F +GA+M+R+VA+ T D +GDGTTTAT LAQAI EG K V AG NPMD+KRGI
Sbjct: 61 ELEDKFENMGAQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGI 120
Query: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA 180
D AV VVE LKAN + V + EI QVATISANGD EIG +A AME++G G+IT++++
Sbjct: 121 DRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEES 180
Query: 181 KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA 240
KTA TE+ VV+GMQ DRGY+SPYFVT ++M AE+E+PYILI++KKIS LQ LLP+LE+
Sbjct: 181 KTAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISNLQDLLPVLEAV 240
Query: 241 TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV 300
QSG+PL IIAEDVEG+ALATLVVN++R GL V AVKAP FGDRRK +L DIA + G TV
Sbjct: 241 VQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTV 300
Query: 301 ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360
ISE++G+KLE T+ LG AKKVV+ K++TTI+ G G IEGR+ +I+ IE+T SDY
Sbjct: 301 ISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDY 360
Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420
DR+KL+ERLAKLAGGVAV+ VG TE + EKKDR D+L ATRAA +EGIVPGGG+AL+
Sbjct: 361 DREKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALL 420
Query: 421 RAAQAL-SVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYN 479
RA +AL ++ N DQ G+EIVR+AL P RQI +NAG E ++V K++E K YG+N
Sbjct: 421 RAVKALDKLETANGDQRTGVEIVRRALEAPVRQIAENAGAEGSVVVGKLRE-KPGGYGFN 479
Query: 480 AQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGG 539
A + +GD++ G+IDPVKVVR ALQ+A S+AG++L TEA+V + PK E A P P GGG
Sbjct: 480 AATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTTEAMVAEKPKKEPAPPAPP-GGG 538
Query: 540 MG 541
M
Sbjct: 539 MD 540
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional.
Length = 546
Score = 590 bits (1523), Expect = e-169
Identities = 315/543 (58%), Positives = 414/543 (76%), Gaps = 1/543 (0%)
Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60
M+AK++K G ARD + GV+ LA AVK TLGPKGR V++ SFGAPR+TKDGVTVAK I
Sbjct: 1 MSAKEVKFGVDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEI 60
Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120
++ F +GA+M+R+VA+ + D++GDGTTTAT LAQAI EG K V AG+NPMD+KRGI
Sbjct: 61 ELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGI 120
Query: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA 180
DLAV+ VV L N KKV S +EI QV TISANGD EIG+ +A AM+++G G+IT+++A
Sbjct: 121 DLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEA 180
Query: 181 KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA 240
K+ TE+ VV+GMQ DRGYISPYFVT+ ++M E+++ YILI +KK+S+L LLP+LE+
Sbjct: 181 KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKKLSSLNELLPLLEAV 240
Query: 241 TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV 300
Q+G+PL I+AEDVEG+ALATLVVNR+R GL V AVKAP FGDRRK +L+DIA + G
Sbjct: 241 VQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQA 300
Query: 301 ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360
ISE++G+KLE T+ LG AKKV++ K++TTIV G G IE R+ +I+ IE+T SDY
Sbjct: 301 ISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDY 360
Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420
DR+KL+ERLAKLAGGVAV+ VG TE + E+KDR D++ ATRAA +EGIVPGGG+AL+
Sbjct: 361 DREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALL 420
Query: 421 RAAQALS-VKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYN 479
RA++ L +K N+DQ G+EIVRKALS P RQI NAG++ +IV KI E + +YG++
Sbjct: 421 RASEQLKGIKTKNDDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYSYGFD 480
Query: 480 AQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGG 539
+Q +G++ GIIDP KVVR A+Q+A S+A +++ TEA+V + PK A P MP GGG
Sbjct: 481 SQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMVAELPKKGGAGPAMPPGGG 540
Query: 540 MGG 542
MGG
Sbjct: 541 MGG 543
>gnl|CDD|178711 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional.
Length = 600
Score = 470 bits (1210), Expect = e-133
Identities = 249/547 (45%), Positives = 355/547 (64%), Gaps = 12/547 (2%)
Query: 2 AAKDI---KLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAK 58
AAK++ K G+A + A GVN LA+ V TLGPKGR V++ + +G+P++ DGVTVAK
Sbjct: 55 AAKELHFNKDGSAIKKLQA-GVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAK 113
Query: 59 SISFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKR 118
+ ++ +GA+++R A T D +GDGTTT+ LAQ + EG K V AG NP+ I R
Sbjct: 114 EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITR 173
Query: 119 GIDLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITID 178
GI+ + +V+ LK K+V E+ VA +SA + E+G IA AM ++G G++T++
Sbjct: 174 GIEKTAKALVKELKKMSKEV-EDSELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLE 232
Query: 179 QAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILE 238
+ K+A + VV+GMQ DRGYISPYFVT +E+M+ E +N +L+ DKKI+ + L+ ILE
Sbjct: 233 EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITNARDLIGILE 292
Query: 239 SATQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGA 298
A + G PL IIAED+E +ALATLVVN++R L + A+KAP FG+R+ + L DIA + G
Sbjct: 293 DAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGG 352
Query: 299 TVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKS 358
TVI EE+GL L+K LG+A KVV++KD TTIVG E + R+ +I+ IE +
Sbjct: 353 TVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQ 412
Query: 359 DYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIA 418
DY+++KL ER+AKL+GGVAV++VG TE L EKK R +D+L+AT+AA +EGIV GGG
Sbjct: 413 DYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCT 472
Query: 419 LVRAAQ---ALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTAN 475
L+R A A+ +N++Q G +IV++ALSYP + I KNAG ++ K+ +
Sbjct: 473 LLRLASKVDAIKDTLENDEQKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNPK 532
Query: 476 YGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMP 535
+GYNA + D+ GIIDP KVVR L+ A S+A L ++ VVV+ + E P
Sbjct: 533 FGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDCVVVEIKEPEPV----P 588
Query: 536 AGGGMGG 542
AG M
Sbjct: 589 AGNPMDN 595
>gnl|CDD|162810 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal.
Thermosome is the name given to the archaeal rather
than eukaryotic form of the group II chaperonin
(counterpart to the group I chaperonin, GroEL/GroES, in
bacterial), a torroidal, ATP-dependent molecular
chaperone that assists in the folding or refolding of
nascent or denatured proteins. Various homologous
subunits, one to five per archaeal genome, may be
designated alpha, beta, etc., but phylogenetic analysis
does not show distinct alpha subunit and beta subunit
lineages traceable to ancient paralogs.
Length = 519
Score = 92.5 bits (230), Expect = 2e-19
Identities = 134/551 (24%), Positives = 225/551 (40%), Gaps = 96/551 (17%)
Query: 10 TAARDAIAYGV---NTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHF 66
T RDA + +AEAVK TLGP+G ++ +S G +T DG T+ K + ++
Sbjct: 12 TKGRDAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHP- 70
Query: 67 HEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQE 126
A+M+ +VA + GDGTTTA LA + + + G++P I G A ++
Sbjct: 71 ---AAKMLVEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEK 127
Query: 127 VVEYLKANHKKVG--SREEIIQVATISANGD-------REIGEKIAYAMEQIGPH----- 172
+E + K+ R+ + +VA S G ++ + A++Q+
Sbjct: 128 ALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGK 187
Query: 173 ------GIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKK 226
I + + + +V+G+ +D+ + P M V+N I + D
Sbjct: 188 YYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHP-------GMPKRVKNAKIALLDAP 240
Query: 227 ISALQPLLPI---LESATQSGRPLCIIAEDVEG--DALATLVVNRVRC--GLPVLA---- 275
+ + + + Q + L ++ D +A N V C G+ LA
Sbjct: 241 LEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYL 300
Query: 276 VKAPAFGDRR--KEVLRDIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIV 333
KA RR K + +A GA ++S +++ T +DLG A V K
Sbjct: 301 AKAGILAVRRVKKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEERKV----- 350
Query: 334 GGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKK 393
G+ +EG K V +L G TE + E +
Sbjct: 351 -GDDKMTFVEG-------------------------CKNPKAVTILLRGG-TEHVVDELE 383
Query: 394 DRYQDSLDATRAASDEG-IVPGGG-----IALVRAAQALSVKGDNEDQCAGIEIVRKALS 447
QD+L +A ++G +V GGG +AL + A + G +Q A IE AL
Sbjct: 384 RSIQDALHVVASALEDGKVVAGGGAVEIELALRLRSYARKIGG--REQLA-IEAFADALE 440
Query: 448 YPCRQIIKNAGDESELIVSKIQ---ESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNAL 504
R + +NAG + + +++ E N G N DM E+G+I+P++V A+
Sbjct: 441 EIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVFTGEIEDMLELGVIEPLRVKEQAI 500
Query: 505 QSAGSLAGMML 515
+SA A M+L
Sbjct: 501 KSATEAATMIL 511
>gnl|CDD|162813 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
zeta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 67.4 bits (165), Expect = 8e-12
Identities = 51/216 (23%), Positives = 96/216 (44%), Gaps = 27/216 (12%)
Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82
L + +K LGPKG ++ + G ++TKDG + + A MI AT +
Sbjct: 28 LQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEM----QIQHPTASMIARAATAQD 83
Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKVGS-- 140
D +GDGTT+ L + + +Y+ G++P + G ++A E++E+L K
Sbjct: 84 DITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEV 143
Query: 141 -REEIIQVA--TISANGDREIGEKIAYAM-----------EQIGPHGIITIDQAKTATTE 186
RE ++ VA ++ ++ +++ + EQI + ++ + T+
Sbjct: 144 DRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATD 203
Query: 187 VRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILI 222
+++G+ +D G P M V+N YIL
Sbjct: 204 TTLIRGLVLDHGARHP-------DMPRRVKNAYILT 232
>gnl|CDD|131394 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
beta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 519
Score = 64.9 bits (158), Expect = 6e-11
Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKG--RCVIIGNSFGAPRVTKDGVTVAKSISFKNHF 66
G AR + G + + VK TLGPKG + + G+S VT DG T+ KSI N
Sbjct: 12 GENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDN-- 69
Query: 67 HEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQE 126
A+++ D++ +D GDGTT+ T LA + E K V ++P I G A +
Sbjct: 70 --PAAKVLVDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKA 127
Query: 127 VVEYLKAN-----HKKVGSREEIIQVA 148
E LK + K R++++ +A
Sbjct: 128 AQEALKKSSIDNGSDKTKFRDDLLNIA 154
Score = 40.6 bits (95), Expect = 0.001
Identities = 35/148 (23%), Positives = 71/148 (47%), Gaps = 6/148 (4%)
Query: 385 TEAALGEKKDRYQDSLDA-TRAASDEGIVPGGGIALVRAAQALSVKGDNED--QCAGIEI 441
T+ L E + D+L ++ + V GGG + + ++A++V+ + +E
Sbjct: 370 TQQILDESERSLHDALCVLSQTVKESRTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEA 429
Query: 442 VRKALSYPCRQIIKNAGDESELIVSKIQESKT---ANYGYNAQKSVFGDMFEMGIIDPVK 498
+AL I NAG +S +V++++ + G + ++ DM ++GII+ K
Sbjct: 430 FARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGEIADMRKLGIIESYK 489
Query: 499 VVRNALQSAGSLAGMMLITEAVVVDAPK 526
V R + SA A ++L + ++ AP+
Sbjct: 490 VKRAVVSSAAEAAEVILRVDNIIKAAPR 517
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional.
Length = 533
Score = 60.8 bits (148), Expect = 8e-10
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 14/134 (10%)
Query: 15 AIAYGVNTLAEAVKCTLGPKGRCVII-----GNSFGAPRVTKDGVTVAKSISFKNHFHEV 69
AIA +A+ VK TLGPKG I+ G G VT DG T+ KS+ N
Sbjct: 31 AIA-----VADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNP---- 81
Query: 70 GARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVE 129
A+++ D++ ++ GDGTT+ LA + E K + ++P I G +A+ +
Sbjct: 82 AAKILVDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARK 141
Query: 130 YLKANHKKVGSREE 143
L+ GS EE
Sbjct: 142 ALEEIAFDHGSDEE 155
Score = 39.6 bits (93), Expect = 0.002
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 15/130 (11%)
Query: 407 SDEGIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQ----IIKNAGD 459
D +V GGG + + A + L+ K + + A IE KAL RQ I N G
Sbjct: 404 KDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLA-IEAFAKAL----RQIPTIIADNGGY 458
Query: 460 ESELIVSKIQESKTA---NYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLI 516
+S +VSK++ G + +K GDM E+GI + KV + L SA A M+L
Sbjct: 459 DSAELVSKLRAEHYKGNKTAGIDMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILR 518
Query: 517 TEAVVVDAPK 526
+ ++ AP+
Sbjct: 519 VDDIIRCAPR 528
>gnl|CDD|131395 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
delta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 517
Score = 59.4 bits (144), Expect = 3e-09
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82
+A+A++ +LGP+G +I + G +T DG T+ K + A+M+ +++ +
Sbjct: 21 VADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGV----IHPAAKMLVELSKAQD 76
Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKV--GS 140
+GDGTT+ LA A+ + G++P I +A E ++ L V
Sbjct: 77 IEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSD 136
Query: 141 REEIIQVATISAN 153
RE +I+ AT S +
Sbjct: 137 REILIKSATTSLS 149
Score = 29.8 bits (67), Expect = 1.8
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 12/142 (8%)
Query: 389 LGEKKDRYQDSLDATRA-ASDEGIVPGGGIALVRAAQALSVKGDNEDQCAGIE--IVRK- 444
+ E + D+L R+ G++PGGG + A LS G+E VR
Sbjct: 376 IDEAERSLHDALCVIRSLVKKRGLIPGGGAPEIEIAIKLSKLAR---TMKGVESYCVRAF 432
Query: 445 --ALSYPCRQIIKNAGDESELIVSKIQE---SKTANYGYNAQKSVFGDMFEMGIIDPVKV 499
AL + +NAG +V++++ + G + +K DM E ++ P+ V
Sbjct: 433 ADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLEEEVLQPLLV 492
Query: 500 VRNALQSAGSLAGMMLITEAVV 521
+A+ A M+L + +V
Sbjct: 493 TTSAVTLASETVRMILKIDDIV 514
>gnl|CDD|131398 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit. Members
of this family, all eukaryotic, are part of the group II
chaperonin complex called CCT (chaperonin containing
TCP-1) or TRiC. The archaeal equivalent group II
chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
eta chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 522
Score = 58.6 bits (142), Expect = 4e-09
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82
+AE +K TLGP+G +I V+ DG T+ K + + H A+ + D+A + +
Sbjct: 30 IAEILKTTLGPRGMDKLIVGK-NGATVSNDGATILKLL---DIVHPA-AKTLVDIAKSQD 84
Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKAN 134
GDGTT+ LA + E + ++ G++P I R A+ +E LK
Sbjct: 85 SEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEI 136
Score = 42.4 bits (100), Expect = 3e-04
Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 404 RAASDEGIVPGGG---IALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDE 460
RA IV GGG + L + + S K D + Q IE KAL R + +NAG +
Sbjct: 395 RALKARKIVAGGGAIEMELSKILREHSKKIDGKQQLI-IEAFAKALEIIPRSLCENAGFD 453
Query: 461 SELIVSKIQ---ESKTANYGYNAQKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLIT 517
S I++K++ YG + GD FE + +P+ V +NAL++A A +L
Sbjct: 454 SIEILNKLRSRHAKGGKWYGVDINTEDIGDNFENFVWEPLLVKKNALKAAFEAACTILSI 513
Query: 518 EAVVV 522
+ ++
Sbjct: 514 DETIM 518
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
epsilon chain (part of a paralogous family) from
animals, plants, fungi, and other eukaryotes.
Length = 532
Score = 52.9 bits (127), Expect = 2e-07
Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 14/149 (9%)
Query: 20 VNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVAT 79
++A ++ +LGPKG ++ + G VT DG T+ + N A+++ +++
Sbjct: 36 AKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPI----AKLMVELSK 91
Query: 80 NTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKANHKKV- 138
+ +D GDGTT LA A+ + + G++P+ I G ++A + VE+L+ +++
Sbjct: 92 SQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEIS 151
Query: 139 ---GSREEIIQVATISANGDREIGEKIAY 164
++E +IQ A S +G KI
Sbjct: 152 DDNNNKEPLIQAAKTS------LGSKIVS 174
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 536
Score = 47.8 bits (114), Expect = 7e-06
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 9 GTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHE 68
G R +A VK +LGP G ++ + G +T DG T+ K + ++
Sbjct: 10 GQDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHP--- 66
Query: 69 VGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVV 128
A+++ ++A + GDGTT+ +A + + + ++P I G LA +E V
Sbjct: 67 -AAKILVELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAV 125
Query: 129 EYLKANHKKVGS---REEIIQVATIS 151
+Y+K N RE +I VA S
Sbjct: 126 KYIKENLSVSVDELGREALINVAKTS 151
Score = 32.8 bits (75), Expect = 0.22
Identities = 59/262 (22%), Positives = 98/262 (37%), Gaps = 71/262 (27%)
Query: 276 VKAPAFGDRR--KEVLRDIAAVVGATVISEEIGLKLEKA-TIADLGSAKKVVMSK--DDT 330
V+A A G RR KE L+ IA G T++S L+ E+ + LG A +VV + DD
Sbjct: 297 VEAGAMGVRRCKKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVVEERIADDE 356
Query: 331 TIVGGNGPSERIEGRI----------NEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLE 380
I+ G R I +E+++++ D R E + + GG AV
Sbjct: 357 CIL-IKGTKGRKSASIILRGANDFMLDEMERSLHDALCVVKR--TLESNSVVPGGGAV-- 411
Query: 381 VGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALVRAAQALSVKGDNEDQCAGIE 440
E AL + + +L + +Q A E
Sbjct: 412 -----ETALSIYLENFATTL------------------------------GSREQLAIAE 436
Query: 441 IVRKALSYPCRQIIKNAGDESELIVSKI-----------QESKTANYGYNAQKSVFGDMF 489
L P + + NA +S +V+K+ ++ YG + D
Sbjct: 437 FAEALLIIP-KVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLKWYGLDLSNGKIRDNK 495
Query: 490 EMGIIDP----VKVVRNALQSA 507
E G+++P VK ++ A ++A
Sbjct: 496 EAGVLEPAVSKVKSLKFATEAA 517
>gnl|CDD|162812 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
alpha chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 531
Score = 45.1 bits (107), Expect = 5e-05
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 23 LAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNTE 82
L+ + +LGP G ++ N VT D T+ + + + H A+++ + E
Sbjct: 30 LSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQ---HPA-AKLLVMASEMQE 85
Query: 83 DSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYL 131
+ GDGT LA + ++ + + GL+P +I +G + A+++ +E L
Sbjct: 86 NEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVL 134
>gnl|CDD|162811 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit.
Members of this family, all eukaryotic, are part of the
group II chaperonin complex called CCT (chaperonin
containing TCP-1) or TRiC. The archaeal equivalent group
II chaperonin is often called the thermosome. Both are
somewhat related to the group I chaperonin of bacterial,
GroEL/GroES. This family consists exclusively of the CCT
gamma chain (part of a paralogous family) from animals,
plants, fungi, and other eukaryotes.
Length = 525
Score = 34.7 bits (80), Expect = 0.070
Identities = 48/233 (20%), Positives = 91/233 (39%), Gaps = 51/233 (21%)
Query: 22 TLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDVATNT 81
+A+ ++ TLGP+ ++ + G +T DG + + I H MI +++
Sbjct: 27 AVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVA---HPAAKSMI-ELSRTQ 82
Query: 82 EDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGIDLAVQEVVEYLKA-------- 133
++ GDGTT+ LA + + ++ ++P I R A+ + + L+
Sbjct: 83 DEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVN 142
Query: 134 -------------NHKKVGSREEII---------QVATISANGDREIGEKIAYAMEQIGP 171
K V +++ V NG +EI K +E+I P
Sbjct: 143 DDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKI-P 201
Query: 172 HGIITIDQAKTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYD 224
G I + V++G+ I++ P +M +ENP I++ D
Sbjct: 202 GGDI---------EDSCVLKGVMINKDVTHP-------KMRRYIENPRIVLLD 238
Score = 28.6 bits (64), Expect = 4.3
Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 9/147 (6%)
Query: 389 LGEKKDRYQDSLDATRAASDEG-IVPGGGIALVRAAQALSVKGD--NEDQCAGIEIVRKA 445
L E + QD++ R E ++PGGG + + L+ K Q V A
Sbjct: 380 LNEIERNLQDAMAVARNVLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADA 439
Query: 446 LSYPCRQIIKNAGDE-----SELIVSKIQESKTANYGYNAQKSVFGDMFEMGIIDPVKVV 500
L R + +N G +EL QE +G + + DM E GI +P+ V
Sbjct: 440 LEIIPRTLAQNCGVNVIRTLTELRAKHAQEGN-CTWGIDGETGKIVDMKEKGIWEPLAVK 498
Query: 501 RNALQSAGSLAGMMLITEAVVVDAPKD 527
++A A M+L + +V K
Sbjct: 499 LQTYKTAIESACMLLRIDDIVSGVKKK 525
>gnl|CDD|165505 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 33.0 bits (75), Expect = 0.22
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 22/129 (17%)
Query: 285 RKEVLRDIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGP----SE 340
+ E DI + E +L+ T+ L A+ V+ S D T + +GP +E
Sbjct: 1715 KAETANDIVTQAALLLTKVEETKELDTQTVEWLKHAESVIDSHDLTVRIDESGPMTIYAE 1774
Query: 341 RIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVG-DVTEAALGEKKDRYQDS 399
RI+ + L+ RLA+L +A+ EV D T + KDR S
Sbjct: 1775 RIDALVR-----------------LENRLAELKSELALAEVAWDDTWSTFIHDKDRIDKS 1817
Query: 400 LDATRAASD 408
+ AA +
Sbjct: 1818 SEGFSAARE 1826
>gnl|CDD|147974 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 167
Score = 31.5 bits (72), Expect = 0.58
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 342 IEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLD 401
E I E++K ++ TK + ++++LK L + + + KDR ++ L
Sbjct: 60 REKEIEELKKKLKKTKDEEEKEELKRALQSM-----------KSRLKTLKNKDREREILA 108
Query: 402 ATRAASDEGIVPG 414
+ E I G
Sbjct: 109 EHKKQEKELIKEG 121
>gnl|CDD|165506 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 29.5 bits (66), Expect = 2.4
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 398 DSLDATRAASDEGIVPGGGIALVRAAQALSVKGDNEDQCAGIEIVRKALSYPC 450
D LDA RA + GG+ L AA A D A E+VR ++ C
Sbjct: 1489 DRLDALRADVHRAL---GGVPLDLAAAAEQTSRLRNDPAAAAELVRTGVTLAC 1538
>gnl|CDD|180966 PRK07409, PRK07409, threonine synthase; Validated.
Length = 353
Score = 28.6 bits (65), Expect = 4.5
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 11/47 (23%)
Query: 411 IVPGGGIALVRAAQA-------LSVKGDNEDQCAGIEIVRK-ALSYP 449
++P G IAL + AQA + + G N D +EIVR+ A YP
Sbjct: 107 LIPEGKIALGKLAQAVMYGAEIIQIDG-NFDDA--LEIVRELAEKYP 150
>gnl|CDD|178604 PLN03037, PLN03037, lipase class 3 family protein; Provisional.
Length = 525
Score = 28.4 bits (63), Expect = 5.6
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 8/35 (22%)
Query: 43 SFGAPRVTKDGVTVAKSISFKNHFHEVGARMIRDV 77
SFGAPRV +++FK +E+G +++R V
Sbjct: 353 SFGAPRV--------GNLAFKEKLNELGVKVLRVV 379
>gnl|CDD|148284 pfam06583, Neogenin_C, Neogenin C-terminus. This family represents
the C-terminus of eukaryotic neogenin precursor
proteins, which contains several potential
phosphorylation sites. Neogenin is a member of the N-CAM
family of cell adhesion molecules (and therefore
contains multiple copies of pfam00047 and pfam00041) and
is closely related to the DCC tumour suppressor gene
product - these proteins may play an integral role in
regulating differentiation programmes and/or cell
migration events within many adult and embryonic
tissues.
Length = 378
Score = 28.0 bits (62), Expect = 6.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 348 EIQKAIEDTKSDYDRDKLKERLAKLAG 374
E K +ED S Y+ D+L E +A L G
Sbjct: 341 ETTKMLEDPDSSYEPDELSEEMAHLEG 367
>gnl|CDD|163109 TIGR03023, WcaJ_sugtrans, Undecaprenyl-phosphate glucose
phosphotransferase. Colanic acid biosynthesis utilizes
a glucose-undecaprenyl carrier, knockout of EpsB
abolishes incorporation of UDP-glucose into the lipid
phase and the C-terminal portion of GumD has been shown
to be responsible for the glucosyl-1-transferase
activity.
Length = 451
Score = 27.9 bits (63), Expect = 6.6
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 12/98 (12%)
Query: 284 RRKEVLRDIAAVVGATVISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIE 343
RRK +VGA E+G +L + + +VV DD +
Sbjct: 122 RRKGFNLRRVLIVGAG----ELGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVL 177
Query: 344 GRINEIQKAIEDTKSD--------YDRDKLKERLAKLA 373
G+++++++ I + + D D++ E L L
Sbjct: 178 GKLDDLEELIREGEVDEVYIALPLAAEDRILELLDALE 215
>gnl|CDD|148710 pfam07262, DUF1436, Protein of unknown function (DUF1436). This
family consists of several hypothetical bacterial
proteins of around 160 residues in length. The function
of this family is unknown.
Length = 158
Score = 27.7 bits (62), Expect = 7.3
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 14/73 (19%)
Query: 431 DNEDQCAGIEIVRKALSYP-------CRQIIKNAGDESEL--IVSKIQESKTANYGYNAQ 481
D +D G I +ALS R V K+ E YGY ++
Sbjct: 39 DVDDSDLGKAI-LQALSKSRTIDEDEFRHFFDLEKLSEFYKNWVKKLMEK----YGYKSK 93
Query: 482 KSVFGDMFEMGII 494
+++F +M GI
Sbjct: 94 RALFKNMKFCGIS 106
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase
inhibitor.
Length = 539
Score = 27.7 bits (61), Expect = 7.7
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 51 KDGVTVAKSISFKNHFHEVGARMIRDVATN---TEDSSGDGTTTATCLAQAIYNEGRKYV 107
+G T A F R++R V N +D SG T + AI GR+ V
Sbjct: 195 NNGNTTANQKGFPTWVSRKDRRLLRLVRANLVVAKDGSGHFNT----VQAAIDVAGRRKV 250
Query: 108 TAGLNPMDIKRGI 120
T+G + +KRGI
Sbjct: 251 TSGRFVIYVKRGI 263
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 27.9 bits (62), Expect = 8.1
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 12/66 (18%)
Query: 204 FVTSTERMTAEVENPYILIYDKKISA------------LQPLLPILESATQSGRPLCIIA 251
FV RM A + P L ISA +P + ILE T SG + A
Sbjct: 32 FVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCA 91
Query: 252 EDVEGD 257
E +E
Sbjct: 92 EAIERR 97
>gnl|CDD|152291 pfam11855, DUF3375, Protein of unknown function (DUF3375). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 479 to 499 amino acids in
length.
Length = 471
Score = 27.7 bits (62), Expect = 8.2
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 343 EGRINEIQKAIED--TKSDYDRDK----LKERLAKLAGGVAVLEVGDVTEAALGEKKDRY 396
E R+ + + + ++ D + L+ + +L + LE GDV + ++R+
Sbjct: 118 ESRLLTVFELLRQLAEGTEPDPEARLAELEREIDELDAEIDRLEAGDVPLLDDTQVRERF 177
Query: 397 QDSLD-ATRAASD 408
+ LD A +D
Sbjct: 178 RQILDLARELPAD 190
>gnl|CDD|173129 PRK14666, uvrC, excinuclease ABC subunit C; Provisional.
Length = 694
Score = 27.5 bits (61), Expect = 8.7
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 353 IEDTKSDYD--RDKLKERLAKLAGGVAVLE-VGDVTEAALGEKKDRYQDSLDATRAASDE 409
+ DT DY R + A L G + +E +G T L E+ SL A AA +E
Sbjct: 614 VRDTVHDYAIGRHRRARAGAALTGELQRVEGIGPATARLLWERFG----SLQAMAAAGEE 669
Query: 410 GIVPGGGIALVRAAQ 424
G+ GI RAA
Sbjct: 670 GLAAVPGIGPARAAA 684
>gnl|CDD|162694 TIGR02089, TTC, tartrate dehydrogenase. Tartrate dehydrogenase
catalyzes the oxidation of both meso- and (+)-tartrate
as well as a D-malate. These enzymes are closely related
to the 3-isopropylmalate and isohomocitrate
dehydrogenases found in TIGR00169 and TIGR02088,
respectively.
Length = 352
Score = 27.5 bits (61), Expect = 8.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 154 GDREIGEKIAYAMEQIGPHGIITIDQAKTATT 185
G++E G KI A+E++ GI+T D ATT
Sbjct: 310 GEKEAGAKIMDAIERVTAAGILTPDVGGKATT 341
>gnl|CDD|184643 PRK14354, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 458
Score = 27.5 bits (62), Expect = 9.9
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 473 TANY-GYNAQKSVFGDMFEMG----IIDPVKVVRNALQSAGSLAGMMLITEAVVVDA 524
T NY G N K++ GD +G ++ PV V NA +AGS IT+ V DA
Sbjct: 383 TVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGS-----TITKDVPEDA 434
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.315 0.133 0.365
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,816,592
Number of extensions: 592682
Number of successful extensions: 1234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1197
Number of HSP's successfully gapped: 67
Length of query: 551
Length of database: 5,994,473
Length adjustment: 98
Effective length of query: 453
Effective length of database: 3,876,889
Effective search space: 1756230717
Effective search space used: 1756230717
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.8 bits)