BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62] (551 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62] Length = 551 Score = 1110 bits (2870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 551/551 (100%), Positives = 551/551 (100%) Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI Sbjct: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60 Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI Sbjct: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120 Query: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA 180 DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA Sbjct: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA 180 Query: 181 KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA 240 KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA Sbjct: 181 KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA 240 Query: 241 TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV 300 TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV Sbjct: 241 TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV 300 Query: 301 ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360 ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY Sbjct: 301 ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360 Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV Sbjct: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420 Query: 421 RAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNA 480 RAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNA Sbjct: 421 RAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNA 480 Query: 481 QKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGGM 540 QKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGGM Sbjct: 481 QKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGGM 540 Query: 541 GGGMGGMDMMM 551 GGGMGGMDMMM Sbjct: 541 GGGMGGMDMMM 551 >gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter asiaticus str. psy62] Length = 864 Score = 27.7 bits (60), Expect = 0.46, Method: Compositional matrix adjust. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 410 GIVPGGGIALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQ 469 G VP L +A L+ K + + + +RK L + +KN+ D LI+++I Sbjct: 766 GPVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFD--HLILNQIL 823 Query: 470 ESKTANY 476 E Y Sbjct: 824 EELNPGY 830 >gi|254780507|ref|YP_003064920.1| hypothetical protein CLIBASIA_01970 [Candidatus Liberibacter asiaticus str. psy62] Length = 176 Score = 26.6 bits (57), Expect = 0.98, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 8/71 (11%) Query: 252 EDVEGDALATLVVNRVRCGLPV---LAVKAPAFGDRRKEVLRDIAAVVGATVISEEIGLK 308 +++ D L TL+ G P+ + +KA F + RK++ D+ + +G+ ISE + + Sbjct: 83 KEIATDYLYTLL-----SGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDE 137 Query: 309 LEKATIADLGS 319 L +I D+ S Sbjct: 138 LNYLSIVDMRS 148 >gi|254781012|ref|YP_003065425.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62] Length = 349 Score = 24.3 bits (51), Expect = 6.3, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 233 LLPILESATQSGRPLCIIAEDVEGD 257 ++P+LE G PLCI E + D Sbjct: 119 VMPVLERMETIGMPLCIHGEILNQD 143 >gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter asiaticus str. psy62] Length = 337 Score = 23.9 bits (50), Expect = 7.6, Method: Compositional matrix adjust. Identities = 8/18 (44%), Positives = 14/18 (77%) Query: 337 GPSERIEGRINEIQKAIE 354 PSE ++GR+ EI+K ++ Sbjct: 174 APSEMMDGRVQEIRKKLD 191 >gi|254780761|ref|YP_003065174.1| probable FAD-dependent oxidoreductase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 473 Score = 23.9 bits (50), Expect = 7.6, Method: Compositional matrix adjust. Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 369 LAKLAGGVAVLEVGDVTEAALG 390 LA AGG AVL G++ LG Sbjct: 149 LATNAGGTAVLSYGNIRHLCLG 170 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.133 0.365 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 317,165 Number of Sequences: 1233 Number of extensions: 12510 Number of successful extensions: 37 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 10 length of query: 551 length of database: 328,796 effective HSP length: 78 effective length of query: 473 effective length of database: 232,622 effective search space: 110030206 effective search space used: 110030206 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 41 (20.4 bits)