BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus
Liberibacter asiaticus str. psy62]
(551 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62]
Length = 551
Score = 1110 bits (2870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/551 (100%), Positives = 551/551 (100%)
Query: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60
MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI
Sbjct: 1 MAAKDIKLGTAARDAIAYGVNTLAEAVKCTLGPKGRCVIIGNSFGAPRVTKDGVTVAKSI 60
Query: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120
SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI
Sbjct: 61 SFKNHFHEVGARMIRDVATNTEDSSGDGTTTATCLAQAIYNEGRKYVTAGLNPMDIKRGI 120
Query: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA 180
DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA
Sbjct: 121 DLAVQEVVEYLKANHKKVGSREEIIQVATISANGDREIGEKIAYAMEQIGPHGIITIDQA 180
Query: 181 KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA 240
KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA
Sbjct: 181 KTATTEVRVVQGMQIDRGYISPYFVTSTERMTAEVENPYILIYDKKISALQPLLPILESA 240
Query: 241 TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV 300
TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV
Sbjct: 241 TQSGRPLCIIAEDVEGDALATLVVNRVRCGLPVLAVKAPAFGDRRKEVLRDIAAVVGATV 300
Query: 301 ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360
ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY
Sbjct: 301 ISEEIGLKLEKATIADLGSAKKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDY 360
Query: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420
DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV
Sbjct: 361 DRDKLKERLAKLAGGVAVLEVGDVTEAALGEKKDRYQDSLDATRAASDEGIVPGGGIALV 420
Query: 421 RAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNA 480
RAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNA
Sbjct: 421 RAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQESKTANYGYNA 480
Query: 481 QKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGGM 540
QKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGGM
Sbjct: 481 QKSVFGDMFEMGIIDPVKVVRNALQSAGSLAGMMLITEAVVVDAPKDETASPQMPAGGGM 540
Query: 541 GGGMGGMDMMM 551
GGGMGGMDMMM
Sbjct: 541 GGGMGGMDMMM 551
>gi|254781202|ref|YP_003065615.1| hypothetical protein CLIBASIA_05545 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 864
Score = 27.7 bits (60), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 410 GIVPGGGIALVRAAQALSVKGDNEDQCAGIEIVRKALSYPCRQIIKNAGDESELIVSKIQ 469
G VP L +A L+ K + + + +RK L + +KN+ D LI+++I
Sbjct: 766 GPVPSMVTNLTSSAVELATKDNENSKVNATKAIRKTLPFMNMWYLKNSFD--HLILNQIL 823
Query: 470 ESKTANY 476
E Y
Sbjct: 824 EELNPGY 830
>gi|254780507|ref|YP_003064920.1| hypothetical protein CLIBASIA_01970 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 176
Score = 26.6 bits (57), Expect = 0.98, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 252 EDVEGDALATLVVNRVRCGLPV---LAVKAPAFGDRRKEVLRDIAAVVGATVISEEIGLK 308
+++ D L TL+ G P+ + +KA F + RK++ D+ + +G+ ISE + +
Sbjct: 83 KEIATDYLYTLL-----SGPPMGDFVQIKAFGFDNLRKKIKEDLNSRLGSQFISEVLIDE 137
Query: 309 LEKATIADLGS 319
L +I D+ S
Sbjct: 138 LNYLSIVDMRS 148
>gi|254781012|ref|YP_003065425.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62]
Length = 349
Score = 24.3 bits (51), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 233 LLPILESATQSGRPLCIIAEDVEGD 257
++P+LE G PLCI E + D
Sbjct: 119 VMPVLERMETIGMPLCIHGEILNQD 143
>gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 337
Score = 23.9 bits (50), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 337 GPSERIEGRINEIQKAIE 354
PSE ++GR+ EI+K ++
Sbjct: 174 APSEMMDGRVQEIRKKLD 191
>gi|254780761|ref|YP_003065174.1| probable FAD-dependent oxidoreductase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 473
Score = 23.9 bits (50), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 369 LAKLAGGVAVLEVGDVTEAALG 390
LA AGG AVL G++ LG
Sbjct: 149 LATNAGGTAVLSYGNIRHLCLG 170
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.315 0.133 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 317,165
Number of Sequences: 1233
Number of extensions: 12510
Number of successful extensions: 37
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 10
length of query: 551
length of database: 328,796
effective HSP length: 78
effective length of query: 473
effective length of database: 232,622
effective search space: 110030206
effective search space used: 110030206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 41 (20.4 bits)