Query gi|254780850|ref|YP_003065263.1| hypothetical protein CLIBASIA_03725 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 30
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 39220
Date Sun May 29 23:29:42 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780850.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03080 CH4_NH3mon_ox_A meth 17.9 40 0.001 17.7 0.3 13 18-30 41-56 (243)
2 pfam02461 AMO Ammonia monooxyg 16.8 44 0.0011 17.5 0.3 13 18-30 41-56 (245)
3 pfam11300 DUF3102 Protein of u 16.7 50 0.0013 17.3 0.5 24 5-28 24-48 (130)
4 KOG1800 consensus 13.7 64 0.0016 16.8 0.4 18 12-29 420-437 (468)
5 smart00735 ZM ZASP-like motif. 10.1 96 0.0025 15.9 0.4 10 17-26 7-16 (26)
6 pfam09298 DUF1969 Domain of un 10.0 96 0.0025 15.9 0.4 10 17-26 1-10 (101)
7 KOG3405 consensus 10.0 1E+02 0.0026 15.8 0.5 16 13-28 113-128 (136)
8 TIGR01248 drrC daunorubicin re 9.8 1.1E+02 0.0028 15.7 0.6 18 11-28 112-129 (152)
9 PRK10879 proline aminopeptidas 8.1 65 0.0016 16.7 -1.1 26 1-27 257-283 (436)
10 TIGR00904 mreB cell shape dete 5.7 2E+02 0.005 14.5 0.3 9 10-20 292-300 (337)
No 1
>TIGR03080 CH4_NH3mon_ox_A methane monooxygenase/ammonia monooxygenase, subunit A. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit A of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=17.89 E-value=40 Score=17.71 Aligned_cols=13 Identities=54% Similarity=1.035 Sum_probs=8.3
Q ss_pred CCCCCC---CCCCCCC
Q ss_conf 686111---2331359
Q gi|254780850|r 18 NLPMGQ---FSDWKDR 30 (30)
Q Consensus 18 nlpmgq---fsdwkdr 30 (30)
-|-||. ..|||||
T Consensus 41 mL~~GDWDFW~DWKDR 56 (243)
T TIGR03080 41 MLLAGDWDFWVDWKDR 56 (243)
T ss_pred HHHCCCCCHHCCCCCC
T ss_conf 9852675122125524
No 2
>pfam02461 AMO Ammonia monooxygenase. Ammonia monooxygenase plays a key role in the nitrogen cycle and degrades a wide range of hydrocarbons and halogenated hydrocarbons.
Probab=16.79 E-value=44 Score=17.52 Aligned_cols=13 Identities=62% Similarity=1.224 Sum_probs=8.3
Q ss_pred CCCCCC---CCCCCCC
Q ss_conf 686111---2331359
Q gi|254780850|r 18 NLPMGQ---FSDWKDR 30 (30)
Q Consensus 18 nlpmgq---fsdwkdr 30 (30)
-|-||. ..|||||
T Consensus 41 mL~~GDWDFW~DWKDR 56 (245)
T pfam02461 41 MLTMGDWDFWVDWKDR 56 (245)
T ss_pred HHHCCCCCHHCCCCCC
T ss_conf 9852675122125524
No 3
>pfam11300 DUF3102 Protein of unknown function (DUF3102). This family of proteins has no known function.
Probab=16.67 E-value=50 Score=17.27 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHH-CCCCCCCCCCCC
Q ss_conf 145530345552-168611123313
Q gi|254780850|r 5 CEQEVGGALLET-RNLPMGQFSDWK 28 (30)
Q Consensus 5 ceqevggallet-rnlpmgqfsdwk 28 (30)
+--|+|-.|.+. .+||-|+|-.|-
T Consensus 24 ~aIEIGrrL~~~Ke~l~HGef~~WL 48 (130)
T pfam11300 24 SAIEIGRRLKEAKALLPHGEWGKWL 48 (130)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 9999999999999858866299999
No 4
>KOG1800 consensus
Probab=13.71 E-value=64 Score=16.76 Aligned_cols=18 Identities=44% Similarity=0.859 Sum_probs=15.6
Q ss_pred HHHHHCCCCCCCCCCCCC
Q ss_conf 455521686111233135
Q gi|254780850|r 12 ALLETRNLPMGQFSDWKD 29 (30)
Q Consensus 12 alletrnlpmgqfsdwkd 29 (30)
++|++|+.+.-.|+||+.
T Consensus 420 ~~l~~~~v~~v~w~dWe~ 437 (468)
T KOG1800 420 ALLESRGVRVVSWSDWEK 437 (468)
T ss_pred HHHHCCCCCEECCHHHHH
T ss_conf 764036974242506777
No 5
>smart00735 ZM ZASP-like motif. Short motif (26 amino acids) present in an alpha-actinin-binding protein, ZASP, and similar molecules.
Probab=10.11 E-value=96 Score=15.95 Aligned_cols=10 Identities=40% Similarity=0.760 Sum_probs=8.3
Q ss_pred CCCCCCCCCC
Q ss_conf 1686111233
Q gi|254780850|r 17 RNLPMGQFSD 26 (30)
Q Consensus 17 rnlpmgqfsd 26 (30)
-|-|||-+|+
T Consensus 7 YNsPigLYS~ 16 (26)
T smart00735 7 YNSPIGLYSS 16 (26)
T ss_pred CCCCCCEECH
T ss_conf 2797221023
No 6
>pfam09298 DUF1969 Domain of unknown function (DUF1969). The N-terminal domain of fumarylacetoacetate hydrolase is functionally uncharacterized, and adopts a structure consisting of an SH3-like barrel.
Probab=9.99 E-value=96 Score=15.94 Aligned_cols=10 Identities=60% Similarity=1.092 Sum_probs=7.4
Q ss_pred CCCCCCCCCC
Q ss_conf 1686111233
Q gi|254780850|r 17 RNLPMGQFSD 26 (30)
Q Consensus 17 rnlpmgqfsd 26 (30)
.|||.|-||.
T Consensus 1 qNLPfGVFs~ 10 (101)
T pfam09298 1 QNLPFGVFST 10 (101)
T ss_pred CCCCCEEEEC
T ss_conf 9988378665
No 7
>KOG3405 consensus
Probab=9.97 E-value=1e+02 Score=15.85 Aligned_cols=16 Identities=38% Similarity=0.935 Sum_probs=12.6
Q ss_pred HHHHCCCCCCCCCCCC
Q ss_conf 5552168611123313
Q gi|254780850|r 13 LLETRNLPMGQFSDWK 28 (30)
Q Consensus 13 lletrnlpmgqfsdwk 28 (30)
++-.|-||-|.|-||.
T Consensus 113 ~iIRRyLPDgSyEDW~ 128 (136)
T KOG3405 113 FIIRRYLPDGSYEDWS 128 (136)
T ss_pred EEEEEECCCCCCCCCC
T ss_conf 6887617898723465
No 8
>TIGR01248 drrC daunorubicin resistance protein C; InterPro: IPR005943 Daunorubicin resistance protein C confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin, however it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.; GO: 0016021 integral to membrane.
Probab=9.76 E-value=1.1e+02 Score=15.71 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=14.6
Q ss_pred HHHHHHCCCCCCCCCCCC
Q ss_conf 345552168611123313
Q gi|254780850|r 11 GALLETRNLPMGQFSDWK 28 (30)
Q Consensus 11 galletrnlpmgqfsdwk 28 (30)
-+.+.+--.|+.||.||-
T Consensus 112 ~~F~~~G~~P~~~yP~W~ 129 (152)
T TIGR01248 112 LVFLSTGLVPLKLYPDWI 129 (152)
T ss_pred HHHHCCCCCCHHCCCCHH
T ss_conf 999705862011076022
No 9
>PRK10879 proline aminopeptidase P II; Provisional
Probab=8.15 E-value=65 Score=16.74 Aligned_cols=26 Identities=42% Similarity=0.694 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCC-CCCCCC
Q ss_conf 974014553034555216861-112331
Q gi|254780850|r 1 MDTGCEQEVGGALLETRNLPM-GQFSDW 27 (30)
Q Consensus 1 mdtgceqevggalletrnlpm-gqfsdw 27 (30)
||.||+-. |=+-=-||..|. |.||+.
T Consensus 257 iD~G~~~~-gY~sDitRT~pv~Gkfs~~ 283 (436)
T PRK10879 257 IDAGCEYK-GYAGDITRTFPVNGKFTPA 283 (436)
T ss_pred EECCCEEC-CCCCCCEEEEEECCCCCHH
T ss_conf 82371168-7735753898858968899
No 10
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis . Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor . The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography . It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes .; GO: 0000902 cell morphogenesis.
Probab=5.71 E-value=2e+02 Score=14.54 Aligned_cols=9 Identities=89% Similarity=1.309 Sum_probs=0.0
Q ss_pred HHHHHHHCCCC
Q ss_conf 03455521686
Q gi|254780850|r 10 GGALLETRNLP 20 (30)
Q Consensus 10 ggalletrnlp 20 (30)
||||| |||+
T Consensus 292 GGaLL--rnLD 300 (337)
T TIGR00904 292 GGALL--RNLD 300 (337)
T ss_pred CHHHH--HCCC
T ss_conf 30545--2101
Done!