Query gi|254780851|ref|YP_003065264.1| hypothetical protein CLIBASIA_03730 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 64
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:05:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780851.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2eiaa2 a.73.1.1 (A:17-147) EI 14.1 45 0.0033 14.1 2.2 18 6-23 110-128 (131)
2 d1hx0a1 b.71.1.1 (A:404-496) A 10.3 38 0.0028 14.5 0.7 17 28-44 38-54 (93)
3 d1g94a1 b.71.1.1 (A:355-448) B 9.4 43 0.0032 14.2 0.7 17 28-44 39-55 (94)
4 d3e9oa1 c.55.3.14 (A:1835-2087 9.2 34 0.0025 14.8 0.1 22 35-56 60-88 (253)
5 d3enba1 c.55.3.14 (A:1771-1989 8.6 36 0.0026 14.6 0.1 12 35-46 52-63 (219)
6 d1jaea1 b.71.1.1 (A:379-471) A 7.8 56 0.004 13.6 0.7 17 27-43 37-53 (93)
7 d2qjza1 a.40.1.1 (A:13-132) Mi 6.8 59 0.0043 13.5 0.5 31 4-38 4-34 (120)
8 d2qalr1 a.4.8.1 (R:19-73) Ribo 6.6 57 0.0041 13.6 0.3 13 52-64 17-29 (55)
9 d2uubr1 a.4.8.1 (R:19-88) Ribo 6.0 72 0.0052 13.0 0.6 12 53-64 30-41 (70)
10 d1shwb_ b.18.1.4 (B:) Ligand-b 6.0 22 0.0016 15.8 -2.1 17 33-49 40-56 (181)
No 1
>d2eiaa2 a.73.1.1 (A:17-147) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=14.07 E-value=45 Score=14.14 Aligned_cols=18 Identities=17% Similarity=0.464 Sum_probs=7.4
Q ss_pred HHHH-HHHHHHHHHHHHHH
Q ss_conf 8899-99987642356667
Q gi|254780851|r 6 REIY-RWVNLVTGKIANLY 23 (64)
Q Consensus 6 reiy-rwvnlvtgkianly 23 (64)
|+|| ||+-+--.|+...|
T Consensus 110 g~iyrrWiIlgL~k~vkmy 128 (131)
T d2eiaa2 110 RQTYRQWIIEAMSEGIKVM 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999988764
No 2
>d1hx0a1 b.71.1.1 (A:404-496) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=10.33 E-value=38 Score=14.51 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=11.3
Q ss_pred HCCCCCEEEEECCCCCH
Q ss_conf 22433320000207714
Q gi|254780851|r 28 ETKDDKFEYCDVWNGQT 44 (64)
Q Consensus 28 etkddkfeycdvwngqt 44 (64)
.|---.=+||||-.|..
T Consensus 38 ~T~LPaG~YCDVisG~~ 54 (93)
T d1hx0a1 38 QTGLPGGTYCDVISGDK 54 (93)
T ss_dssp ECCSCSEEEECTTTCCE
T ss_pred ECCCCCCCEEEEEECCC
T ss_conf 44799953058333541
No 3
>d1g94a1 b.71.1.1 (A:355-448) Bacterial alpha-Amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]}
Probab=9.41 E-value=43 Score=14.22 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=11.1
Q ss_pred HCCCCCEEEEECCCCCH
Q ss_conf 22433320000207714
Q gi|254780851|r 28 ETKDDKFEYCDVWNGQT 44 (64)
Q Consensus 28 etkddkfeycdvwngqt 44 (64)
.|--..=+||||-.|..
T Consensus 39 ~TgLPaG~YCDVisG~~ 55 (94)
T d1g94a1 39 QTDMASGQYCNVLKGEL 55 (94)
T ss_dssp ECCSCSEEEECTTTCCB
T ss_pred ECCCCCCEEEEEEECCC
T ss_conf 75699942468761331
No 4
>d3e9oa1 c.55.3.14 (A:1835-2087) Pre-mRNA-splicing factor 8, Prp8 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=9.17 E-value=34 Score=14.80 Aligned_cols=22 Identities=41% Similarity=0.730 Sum_probs=12.6
Q ss_pred EEEECCCCCHHH-----HH--HHHHHHCC
Q ss_conf 000020771468-----99--99972048
Q gi|254780851|r 35 EYCDVWNGQTRN-----WL--REVVGKIR 56 (64)
Q Consensus 35 eycdvwngqtrn-----wl--revvgkir 56 (64)
--|+||.||.|- |. .||++-||
T Consensus 60 iHtSvwaGQKRl~qLaKwktAeEv~alir 88 (253)
T d3e9oa1 60 IHTSVWAGQKRLSQLAKWKTAEEVSALVR 88 (253)
T ss_dssp ECGGGGTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred EEEHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86002055568888887867999999997
No 5
>d3enba1 c.55.3.14 (A:1771-1989) Pre-mRNA-splicing factor 8, Prp8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.56 E-value=36 Score=14.65 Aligned_cols=12 Identities=42% Similarity=0.653 Sum_probs=8.4
Q ss_pred EEEECCCCCHHH
Q ss_conf 000020771468
Q gi|254780851|r 35 EYCDVWNGQTRN 46 (64)
Q Consensus 35 eycdvwngqtrn 46 (64)
--|.||+||.|-
T Consensus 52 ihtSvwaGQKRl 63 (219)
T d3enba1 52 IHTSVWAGQKRL 63 (219)
T ss_dssp ECGGGCCSCSCH
T ss_pred EEEHHCCCHHHH
T ss_conf 860120555688
No 6
>d1jaea1 b.71.1.1 (A:379-471) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}
Probab=7.81 E-value=56 Score=13.64 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=11.3
Q ss_pred HHCCCCCEEEEECCCCC
Q ss_conf 32243332000020771
Q gi|254780851|r 27 IETKDDKFEYCDVWNGQ 43 (64)
Q Consensus 27 ietkddkfeycdvwngq 43 (64)
..|--..=+||||-.|.
T Consensus 37 ~qTgLPaG~YCDVisG~ 53 (93)
T d1jaea1 37 LNTGLPAGTYCDVISGE 53 (93)
T ss_dssp EECCCCSEEEECTTTCC
T ss_pred EECCCCCCCEEEEEECC
T ss_conf 85579995304724433
No 7
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.78 E-value=59 Score=13.49 Aligned_cols=31 Identities=32% Similarity=0.549 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 27889999987642356667755322433320000
Q gi|254780851|r 4 WRREIYRWVNLVTGKIANLYLQKIETKDDKFEYCD 38 (64)
Q Consensus 4 wrreiyrwvnlvtgkianlylqkietkddkfeycd 38 (64)
-|.|+-.|+|-..+ +-++|||.--+--.||.
T Consensus 4 SR~eLL~WiN~~L~----~~~~kiEel~tGa~yCQ 34 (120)
T d2qjza1 4 SRHDMLAWINESLQ----LNLTKIEQLCSGAAYCQ 34 (120)
T ss_dssp CHHHHHHHHHHHHT----CCCCCGGGGGGSHHHHH
T ss_pred CHHHHHHHHHHHHC----CCHHHHHHHCCCHHHHH
T ss_conf 79999999999838----98034998356399999
No 8
>d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]}
Probab=6.61 E-value=57 Score=13.58 Aligned_cols=13 Identities=38% Similarity=0.542 Sum_probs=9.3
Q ss_pred HHHCCHHHHHHCC
Q ss_conf 7204800454119
Q gi|254780851|r 52 VGKIRPSDMSRVC 64 (64)
Q Consensus 52 vgkirpsdmsrvc 64 (64)
-|||.|+..+.+|
T Consensus 17 ~GkI~~rr~Tgl~ 29 (55)
T d2qalr1 17 SGKIVPSRITGTR 29 (55)
T ss_dssp TSSBCCSTTTCCC
T ss_pred CCEEECCCCCCCC
T ss_conf 8858387407878
No 9
>d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]}
Probab=6.04 E-value=72 Score=13.05 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=0.0
Q ss_pred HHCCHHHHHHCC
Q ss_conf 204800454119
Q gi|254780851|r 53 GKIRPSDMSRVC 64 (64)
Q Consensus 53 gkirpsdmsrvc 64 (64)
|+|.|+..+.+|
T Consensus 30 GkIlprr~TGl~ 41 (70)
T d2uubr1 30 GKILPRRRTGLS 41 (70)
T ss_dssp SCBCCHHHHCCC
T ss_pred CEEECCCCCCCC
T ss_conf 758167448978
No 10
>d1shwb_ b.18.1.4 (B:) Ligand-binding domain of the ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.01 E-value=22 Score=15.82 Aligned_cols=17 Identities=35% Similarity=1.077 Sum_probs=0.0
Q ss_pred CEEEEECCCCCHHHHHH
Q ss_conf 32000020771468999
Q gi|254780851|r 33 KFEYCDVWNGQTRNWLR 49 (64)
Q Consensus 33 kfeycdvwngqtrnwlr 49 (64)
.|+-|+|-.+...||||
T Consensus 40 tYqVC~v~~~~qnNWLr 56 (181)
T d1shwb_ 40 TYQVCNVFESSQNNWLR 56 (181)
T ss_dssp EEEEECTTSSSCCEEEE
T ss_pred EEEECCCCCCCCCCEEE
T ss_conf 88778889889886066
Done!