BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780851|ref|YP_003065264.1| hypothetical protein
CLIBASIA_03730 [Candidatus Liberibacter asiaticus str. psy62]
(64 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780851|ref|YP_003065264.1| hypothetical protein CLIBASIA_03730 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 64
Score = 134 bits (336), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 64/64 (100%), Positives = 64/64 (100%)
Query: 1 MLFWRREIYRWVNLVTGKIANLYLQKIETKDDKFEYCDVWNGQTRNWLREVVGKIRPSDM 60
MLFWRREIYRWVNLVTGKIANLYLQKIETKDDKFEYCDVWNGQTRNWLREVVGKIRPSDM
Sbjct: 1 MLFWRREIYRWVNLVTGKIANLYLQKIETKDDKFEYCDVWNGQTRNWLREVVGKIRPSDM 60
Query: 61 SRVC 64
SRVC
Sbjct: 61 SRVC 64
>gi|254780803|ref|YP_003065216.1| hypothetical protein CLIBASIA_03470 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 165
Score = 26.2 bits (56), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 5 RREIYRWVNLVTGKIANLYLQKIETKDDKFEYCDVWNGQTRN----------WLREVVGK 54
+ EIYR +N +T + L ++E D F + N +N + +E+ GK
Sbjct: 52 KNEIYRSINFLTSTVRTKNLYQLEVNIDSFTDHAISNAFFKNIGRITLKAKYYFKEISGK 111
>gi|254781213|ref|YP_003065626.1| head-to-tail joining protein, putative [Candidatus Liberibacter
asiaticus str. psy62]
Length = 556
Score = 23.1 bits (48), Expect = 1.0, Method: Composition-based stats.
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 32 DKFEYCDVWNGQTRNWLREVVGKIRP 57
D+F Y G+ W+ E+ G + P
Sbjct: 11 DRFNYLKNQRGELNYWMEELTGFLYP 36
>gi|254781043|ref|YP_003065456.1| succinate dehydrogenase flavoprotein subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 611
Score = 21.9 bits (45), Expect = 2.3, Method: Composition-based stats.
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 4 WRREIYRWVNLVTGKI 19
WR+ WV+ TGKI
Sbjct: 568 WRKHSLCWVDWNTGKI 583
>gi|254780604|ref|YP_003065017.1| 5-aminolevulinate synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 401
Score = 21.6 bits (44), Expect = 3.0, Method: Composition-based stats.
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 27 IETKDDKFEYCDVWNGQTRN 46
IE FE C + G TRN
Sbjct: 65 IENAQRTFEKCGIGAGGTRN 84
>gi|254781014|ref|YP_003065427.1| hypothetical protein CLIBASIA_04580 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 116
Score = 20.8 bits (42), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/43 (18%), Positives = 24/43 (55%)
Query: 2 LFWRREIYRWVNLVTGKIANLYLQKIETKDDKFEYCDVWNGQT 44
+FW + + W++++ ++N+Y Q + +K + ++ + T
Sbjct: 1 MFWIAKKFFWISVLLIVLSNVYAQPFLEETEKGKKTEITDFMT 43
>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 1576
Score = 20.4 bits (41), Expect = 5.3, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 11 WVNLVTGKIANLYLQKIETKDD 32
+VNL++G + Y QK +DD
Sbjct: 724 YVNLISGTLRTNYFQK--NQDD 743
>gi|254780274|ref|YP_003064687.1| lysophospholipase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 317
Score = 20.0 bits (40), Expect = 8.4, Method: Composition-based stats.
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 38 DVWNGQTRNW 47
D+WN +NW
Sbjct: 175 DLWNRNNQNW 184
>gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 673
Score = 19.6 bits (39), Expect = 9.1, Method: Composition-based stats.
Identities = 5/20 (25%), Positives = 15/20 (75%)
Query: 43 QTRNWLREVVGKIRPSDMSR 62
+ +NW+++V+G+ + +S+
Sbjct: 32 RIKNWIQKVIGEEKNKPLSQ 51
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.326 0.140 0.478
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,647
Number of Sequences: 1233
Number of extensions: 1346
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 64
length of database: 328,796
effective HSP length: 35
effective length of query: 29
effective length of database: 285,641
effective search space: 8283589
effective search space used: 8283589
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 31 (16.5 bits)