HHsearch alignment for GI: 254780852 and conserved domain: COG0838
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion].
Probab=100.00 E-value=3.1e-42 Score=241.85 Aligned_cols=121 Identities=48% Similarity=1.040 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 96786537999999999999999999999971567898324174443130004347665247999999999987599999
Q gi|254780852|r 1 MSDLLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFL 80 (121)
Q Consensus 1 m~~~~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l 80 (121)
T Consensus 1 ~~~~~~~y~~i~i~l~v~~~~~~~~l~l~~lL~p~~~~~~K~~~YE~G~~p~g~a~~~f~~qyyl~ailFvvFDie~~fl 80 (123)
T COG0838 1 MMELLDEYLPVLIFLVVALLLGVLMLFLSKLLGPRRPNPEKLSPYECGNPPFGGARLRFSVQYYLVAILFVVFDVEVVFL 80 (123)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 92058889999999999999999999999985789998001675635999987523410208999999999998999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 79999960243899999999999999999999983575789
Q gi|254780852|r 81 FPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 81 ~Pw~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
T Consensus 81 ~pwav~~~~lg~~~f~e~~vFi~~l~vg~~Y~~kkgaL~W~ 121 (123)
T COG0838 81 FPWAVSFKELGLFGFLEMLVFIFVLLVGFVYAWKKGALEWQ 121 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999887706999999999999999999999999885556