HHsearch alignment for GI: 254780852 and conserved domain: MTH00055
>MTH00055 ND3 NADH dehydrogenase subunit 3; Provisional.
Probab=100.00 E-value=0 Score=266.81 Aligned_cols=118 Identities=49% Similarity=1.015 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86537999999999999999999999971567898324174443130004347665247999999999987599999799
Q gi|254780852|r 4 LLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPW 83 (121)
Q Consensus 4 ~~~~y~~ili~~~~~~~~~~~~~~~s~~l~~~~~~~~K~s~yECGf~p~~~~~~~Fsi~fyliallFliFDvEiv~l~Pw 83 (121)
T Consensus 1 M~~~y~~ili~~~~~~~l~~~~~~~s~ll~~~~~~~eK~spYECG~~p~~~~r~~f~v~fylvailFliFDvEi~fl~Pw 80 (118)
T MTH00055 1 MSAEFLGIFILLLCSIGLSTVISGASYILGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPW 80 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 93669999999999999999999999994789999555888377989988777765400799999999999999999899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99960243899999999999999999999983575789
Q gi|254780852|r 84 AVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121 (121)
Q Consensus 84 ~~~~~~~~~~~~~~~~~F~~iL~~gl~yew~~G~L~W~ 121 (121)
T Consensus 81 av~~~~~~~~g~~~~~~F~~iL~~GliYew~kGaL~W~ 118 (118)
T MTH00055 81 CVVYNQIGLLGFWVMYLFLIILTLGLIYEWVKGGLEWE 118 (118)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99973365999999999999999999999973766889