Query gi|254780852|ref|YP_003065265.1| NADH dehydrogenase subunit A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 121
No_of_seqs 117 out of 2581
Neff 6.3
Searched_HMMs 13730
Date Wed Jun 1 10:45:58 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780852.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bz7a1 b.34.3.1 (A:34-79) Myo 38.0 2.8 0.00021 18.9 -0.3 18 36-53 5-22 (46)
2 d2adra2 g.37.1.1 (A:131-161) A 8.4 29 0.0021 13.6 -0.5 10 44-53 1-10 (31)
3 d1rjxb_ b.47.1.2 (B:) Plasmin( 8.0 44 0.0032 12.7 0.3 10 45-54 2-11 (247)
4 d1ct5a_ c.1.6.2 (A:) "Hypothet 7.1 40 0.0029 12.9 -0.2 23 36-58 49-71 (244)
5 g1pnb.1 a.52.1.3 (A:,B:) Napin 5.5 59 0.0043 12.0 -0.1 17 38-54 84-100 (106)
6 d2aqaa1 g.41.16.1 (A:2-58) H/a 5.5 71 0.0052 11.6 0.3 22 38-61 15-36 (57)
7 d1s6da_ a.52.1.3 (A:) Methioni 4.7 88 0.0064 11.1 0.3 15 38-52 85-99 (103)
8 d1x6ea2 g.37.1.1 (A:41-66) Zin 3.2 92 0.0067 11.0 -0.6 4 44-47 2-5 (26)
9 d1fvia2 d.142.2.1 (A:2-189) AT 3.1 99 0.0072 10.8 -0.5 10 39-48 165-174 (188)
10 d1wosa2 d.250.1.1 (A:1-278) Gl 3.1 1.3E+02 0.0096 10.2 0.9 11 40-50 245-255 (278)
No 1
>d3bz7a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=37.99 E-value=2.8 Score=18.92 Aligned_cols=18 Identities=39% Similarity=0.794 Sum_probs=12.8
Q ss_pred CCCHHHHCHHHHHCHHCC
Q ss_conf 898324174443130004
Q gi|254780852|r 36 SPDPEKLSTYECGFDPFD 53 (121)
Q Consensus 36 ~~~~~K~s~yECGf~p~~ 53 (121)
+|++.....||||..-..
T Consensus 5 npdpkerdsyecgeivse 22 (46)
T d3bz7a1 5 NPDPKERDSYECGEIVSE 22 (46)
T ss_dssp CSSTTCTTCCEEEEEEEE
T ss_pred CCCCCCCCCCHHCCEEEC
T ss_conf 788220353000120210
No 2
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=8.39 E-value=29 Score=13.58 Aligned_cols=10 Identities=30% Similarity=0.663 Sum_probs=5.7
Q ss_pred HHHHHCHHCC
Q ss_conf 4443130004
Q gi|254780852|r 44 TYECGFDPFD 53 (121)
Q Consensus 44 ~yECGf~p~~ 53 (121)
||+||+-.-.
T Consensus 1 Pf~C~~C~R~ 10 (31)
T d2adra2 1 PYPCGLCNRA 10 (31)
T ss_dssp SEECTTTCCE
T ss_pred CCCCCCCCCH
T ss_conf 9654504351
No 3
>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.02 E-value=44 Score=12.65 Aligned_cols=10 Identities=20% Similarity=0.793 Sum_probs=4.2
Q ss_pred HHHHCHHCCC
Q ss_conf 4431300043
Q gi|254780852|r 45 YECGFDPFDD 54 (121)
Q Consensus 45 yECGf~p~~~ 54 (121)
||||-.+...
T Consensus 2 ~~cg~~~~~~ 11 (247)
T d1rjxb_ 2 FDCGKPQVEP 11 (247)
T ss_dssp CSTTCCSSCC
T ss_pred CCCCCCCCCC
T ss_conf 8889987677
No 4
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.14 E-value=40 Score=12.88 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=15.1
Q ss_pred CCCHHHHCHHHHHCHHCCCCCCC
Q ss_conf 89832417444313000434766
Q gi|254780852|r 36 SPDPEKLSTYECGFDPFDDARVK 58 (121)
Q Consensus 36 ~~~~~K~s~yECGf~p~~~~~~~ 58 (121)
.+...-...|+||...+|+.|.|
T Consensus 49 ~~~~~I~~~~~~G~~~fGENrvQ 71 (244)
T d1ct5a_ 49 KPASDIQILYDHGVREFGENYVQ 71 (244)
T ss_dssp SCHHHHHHHHHHTCCEEEECCHH
T ss_pred CCHHHHHHHHHCCCCHHHCCHHH
T ss_conf 99999999998498612004045
No 5
>g1pnb.1 a.52.1.3 (A:,B:) Napin BNIb {Rape (Brassica napus) [TaxId: 3708]}
Probab=5.54 E-value=59 Score=11.99 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=13.2
Q ss_pred CHHHHCHHHHHCHHCCC
Q ss_conf 83241744431300043
Q gi|254780852|r 38 DPEKLSTYECGFDPFDD 54 (121)
Q Consensus 38 ~~~K~s~yECGf~p~~~ 54 (121)
...|+.|..||..|++.
T Consensus 84 q~A~~LP~~C~i~p~~~ 100 (106)
T g1pnb.1 84 QIAKNLPNVCNMKQIGT 100 (106)
T ss_dssp HHCCSCSCSSCCTTTCC
T ss_pred HHHHHCCCCCCCCCCCC
T ss_conf 99985723039899888
No 6
>d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex subunit 3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.50 E-value=71 Score=11.55 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=15.0
Q ss_pred CHHHHCHHHHHCHHCCCCCCCCCH
Q ss_conf 832417444313000434766524
Q gi|254780852|r 38 DPEKLSTYECGFDPFDDARVKFDI 61 (121)
Q Consensus 38 ~~~K~s~yECGf~p~~~~~~~Fsi 61 (121)
.-.|..| ||-...+.-..+||-
T Consensus 15 TLkk~~p--~G~~T~sahPaRFSP 36 (57)
T d2aqaa1 15 TLKKVTE--SGEITKSAHPARFSP 36 (57)
T ss_dssp CCCCSSC--CCCCCCSSCCCCCCS
T ss_pred EEECCCC--CCCCCCCCCCCCCCC
T ss_conf 8402388--998125657886786
No 7
>d1s6da_ a.52.1.3 (A:) Methionine-rich 2S protein (albumin 8) {Common sunflower (Helianthus annuus) [TaxId: 4232]}
Probab=4.66 E-value=88 Score=11.08 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=11.3
Q ss_pred CHHHHCHHHHHCHHC
Q ss_conf 832417444313000
Q gi|254780852|r 38 DPEKLSTYECGFDPF 52 (121)
Q Consensus 38 ~~~K~s~yECGf~p~ 52 (121)
...|+.|..||.+|.
T Consensus 85 q~Ak~LPs~C~i~P~ 99 (103)
T d1s6da_ 85 SMAHNLPIECNLMSQ 99 (103)
T ss_dssp HHHHHHHHHTTSSSS
T ss_pred HHHHHCHHHCCCCCC
T ss_conf 999857373298976
No 8
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.25 E-value=92 Score=10.99 Aligned_cols=4 Identities=50% Similarity=1.713 Sum_probs=0.0
Q ss_pred HHHH
Q ss_conf 4443
Q gi|254780852|r 44 TYEC 47 (121)
Q Consensus 44 ~yEC 47 (121)
||||
T Consensus 2 Py~C 5 (26)
T d1x6ea2 2 PYKC 5 (26)
T ss_dssp CEEC
T ss_pred CCCC
T ss_conf 8248
No 9
>d1fvia2 d.142.2.1 (A:2-189) ATP-dependent DNA ligase, N-terminal domain {Chlorella virus PBCV-1 [TaxId: 10506]}
Probab=3.13 E-value=99 Score=10.80 Aligned_cols=10 Identities=20% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHCHHHHH
Q ss_conf 3241744431
Q gi|254780852|r 39 PEKLSTYECG 48 (121)
Q Consensus 39 ~~K~s~yECG 48 (121)
+...++||||
T Consensus 165 K~~ds~Y~~g 174 (188)
T d1fvia2 165 RKPDGKYKFG 174 (188)
T ss_dssp ECTTCCCCSS
T ss_pred ECCCCCCCCC
T ss_conf 7799965999
No 10
>d1wosa2 d.250.1.1 (A:1-278) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=3.09 E-value=1.3e+02 Score=10.15 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=0.0
Q ss_pred HHHCHHHHHCH
Q ss_conf 24174443130
Q gi|254780852|r 40 EKLSTYECGFD 50 (121)
Q Consensus 40 ~K~s~yECGf~ 50 (121)
+..+|+|||.+
T Consensus 245 ~~~~P~E~gl~ 255 (278)
T d1wosa2 245 ENTNPFEVGLS 255 (278)
T ss_dssp TTSCGGGGTCG
T ss_pred CCCCHHHCCCC
T ss_conf 99898888972
Done!