RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780852|ref|YP_003065265.1| NADH dehydrogenase subunit A
[Candidatus Liberibacter asiaticus str. psy62]
(121 letters)
>gnl|CDD|180638 PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A;
Validated.
Length = 121
Score = 173 bits (440), Expect = 1e-44
Identities = 63/121 (52%), Positives = 92/121 (76%)
Query: 1 MSDLLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFD 60
M+++L Y P L+F+ +A + I+L+++ ++ ++PD EK S YE GF+ F DAR+KFD
Sbjct: 1 MTEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFD 60
Query: 61 IRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEW 120
+RF LV++LFVIFDLE AFLFPWAV F++I WLGF M+F+ +L VG +Y W+KGAL+W
Sbjct: 61 VRFYLVAILFVIFDLEAAFLFPWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDW 120
Query: 121 D 121
+
Sbjct: 121 E 121
>gnl|CDD|181171 PRK07928, PRK07928, NADH dehydrogenase subunit A; Validated.
Length = 119
Score = 99.4 bits (248), Expect = 2e-22
Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 2/119 (1%)
Query: 5 LTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARV--KFDIR 62
+ Y PILV A+A+A +V ++ +V K + KL YECG +P +F ++
Sbjct: 1 MNVYIPILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGGGRFPVK 60
Query: 63 FCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEWD 121
+ L ++LF++FD+EI FL+PWAV F + G M +F+ + V + Y W++G LEWD
Sbjct: 61 YYLTAMLFIVFDIEIVFLYPWAVSFDALGVFGLVEMALFMLTVFVAYAYVWRRGGLEWD 119
>gnl|CDD|169084 PRK07756, PRK07756, NADH dehydrogenase subunit A; Validated.
Length = 122
Score = 89.4 bits (222), Expect = 2e-19
Identities = 42/121 (34%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Query: 1 MSDLLT-SYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKF 59
M+ + SY +L+F+ + + +V + ++ P K +TYE G +PF DA ++F
Sbjct: 1 MASVYENSYMIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRF 60
Query: 60 DIRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALE 119
R+ + ++LFVIFD+E FL+PWAV + ++ M++F+ +L VG Y WKK L+
Sbjct: 61 HARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEMLIFVVMLLVGLAYAWKKKVLQ 120
Query: 120 W 120
W
Sbjct: 121 W 121
>gnl|CDD|181448 PRK08489, PRK08489, NADH dehydrogenase subunit A; Validated.
Length = 129
Score = 86.6 bits (215), Expect = 1e-18
Identities = 44/112 (39%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 12 LVFMAIASAIVIVLMISPFI---VAFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSV 68
++ + A + ++ FI +A K+ + KL+ YECG +P + F ++++
Sbjct: 15 VLLVLTFVAFFLTTRLARFISRKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMAL 73
Query: 69 LFVIFDLEIAFLFPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEW 120
LF++FD+EI F+FPWAV FK + G M++F+ +LT+GFIY WKKGALEW
Sbjct: 74 LFILFDVEIVFMFPWAVDFKLLGLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
>gnl|CDD|102372 PRK06432, PRK06432, NADH dehydrogenase subunit A; Validated.
Length = 144
Score = 44.8 bits (106), Expect = 6e-06
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 61 IRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEW 120
++ +V +LFV+FD+++ LFPWA FK++ + F ++FL + Y +K G + W
Sbjct: 83 NQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRW 142
>gnl|CDD|177667 PLN00033, PLN00033, photosystem II stability/assembly factor;
Provisional.
Length = 398
Score = 30.6 bits (69), Expect = 0.11
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 14 FMAIASAIVIVLMISPFIVAFKSPDP-EKLSTYECGFDPFDDARVKFDIRF 63
F+ + L++ P + D E+ S +E P D V DI F
Sbjct: 45 FLRQTATAAAALLLLPLLGPSAPADAAEQSSEWEQVDLPIDPGVVLLDIAF 95
>gnl|CDD|180383 PRK06073, PRK06073, NADH dehydrogenase subunit A; Validated.
Length = 124
Score = 29.2 bits (66), Expect = 0.25
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 1 MSDLLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFD 60
M L I++ +A +L + + P P K+S YE G P A++
Sbjct: 4 MQAALAFGLVIVLGLAAGVGTYKLLKL----ILPSKPTPLKVSRYEAGNPPTGPAKLWLP 59
Query: 61 IRFCLVSVLFVIFDLEIAFLFPWAV 85
+++ +LF+ + + L A
Sbjct: 60 MQYYGYLLLFLTLEPIVVLLLLIAF 84
>gnl|CDD|180519 PRK06298, PRK06298, type III secretion system protein; Validated.
Length = 356
Score = 27.1 bits (60), Expect = 1.1
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 4 LLTSYAPILVFMAIASAIVIVLMISP-FIVAFKSPDPEKLSTYECGFDPFDDARVKFDIR 62
+LT+ P+L +A +V L++ P F PD +K F+P D+ + KF ++
Sbjct: 83 ILTASLPLLGAVAFVGVLVGFLIVGPTFSTEVFKPDIKK-------FNPIDNLKQKFKVK 135
Query: 63 FCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMMVFLGILTV--GFIYE 112
L+ +L I + A L + V ++ + + + L + +Y+
Sbjct: 136 -TLIELLKSILKISGAALILYIVLKNRVPLIIETAGVPPLVTAQIFKEILYK 186
>gnl|CDD|150820 pfam10204, DuoxA, Dual oxidase maturation factor. DuoxA (Dual
oxidase maturation factor) is the essential protein
necessary for the final release of DUOX2 (an NADPH:O2
oxidoreductase flavoprotein) from the endoplasmic
reticulum. Dual oxidases (DUOX1 and DUOX2) constitute
the catalytic core of the hydrogen peroxide generator,
which generates H2O2 at the apical membrane of thyroid
follicular cells, essential for iodination of
thyroglobulin by thyroid peroxidases. DuoxA carries five
membrane-integral regions including a reverse
signal-anchor with external N-terminus (type III) and
two N-glycosylation sites. It is conserved from
nematodes to humans.
Length = 281
Score = 26.7 bits (59), Expect = 1.6
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 49 FDPFDDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMMVFLG--ILT 106
F P + FD+ ++ ++F+ L + P ++ WL + +F+G IL
Sbjct: 2 FYPPNRTSFTFDVSLLVIILVFLTLALAFLLILPGIRGKSRLFWLVRVLLSLFIGAVILA 61
Query: 107 VGFIYEWKKG 116
V F +W
Sbjct: 62 VNFTSDWHVA 71
>gnl|CDD|178532 PLN02946, PLN02946, cysteine-tRNA ligase.
Length = 557
Score = 26.4 bits (58), Expect = 2.0
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 7/35 (20%)
Query: 34 FKSPDPEKLSTYECGFDPFDD-----AR--VKFDI 61
FK K+ Y CG +D AR V FD+
Sbjct: 73 FKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDV 107
>gnl|CDD|179344 PRK01862, PRK01862, putative voltage-gated ClC-type chloride
channel ClcB; Provisional.
Length = 574
Score = 25.9 bits (57), Expect = 2.6
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 6 TSYAP----ILVF-MAIASAIVIVLMISPFIVAFKSPDPEKLSTYE 46
+ AP +++F M ++ +V+ LM+S + F + S YE
Sbjct: 384 ATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYE 429
>gnl|CDD|184190 PRK13628, PRK13628, serine/threonine transporter SstT;
Provisional.
Length = 402
Score = 25.2 bits (56), Expect = 3.8
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 9 APILVFMAIASAI 21
APILVF+ + ++I
Sbjct: 56 APILVFVLVMASI 68
>gnl|CDD|161942 TIGR00587, nfo, apurinic endonuclease (APN1). All proteins in
this family for which functions are known are 5' AP
endonculeases that are used in base excision repair and
the repair of abasic sites in DNA.This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 274
Score = 25.0 bits (55), Expect = 4.6
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 23 IVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIRFC 64
IVL+ +P+++ SPD EK E D D+ +++ C
Sbjct: 64 IVLVHAPYLINLASPDEEKE---EKSLDVLDE-----ELKRC 97
>gnl|CDD|182956 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 24.5 bits (54), Expect = 6.3
Identities = 9/17 (52%), Positives = 10/17 (58%), Gaps = 3/17 (17%)
Query: 71 VIFDLEIAFLFPWAVYF 87
+ F L I PWAVYF
Sbjct: 59 IFFGLLIT---PWAVYF 72
>gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating).
Length = 993
Score = 24.7 bits (54), Expect = 6.5
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 36 SPDPEKLSTYECGFDPFD---DARVKFDIR 62
+P+ +K CGFD D DA V IR
Sbjct: 43 TPEEQKAMAEYCGFDSLDALIDATVPKSIR 72
>gnl|CDD|129276 TIGR00172, maf, MAF protein. This nonessential gene causes
inhibition of septation when overexpressed. A member of
the family is found in the Archaeon Pyrococcus
horikoshii and another in the round worm Caenorhabditis
elegans.
Length = 183
Score = 24.3 bits (53), Expect = 8.3
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 16 AIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDA 55
A+ ++ ++ + V F++ DPE++ Y +P + A
Sbjct: 108 ALIDSVHLLTFLDVTKVHFRALDPEEIEKYVESGEPLEKA 147
>gnl|CDD|161930 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This protein
is a flavoprotein and has a beta-alpha-beta dinucleotide
binding motif near the amino end.
Length = 462
Score = 24.4 bits (53), Expect = 8.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 22 VIVLMISPFIVAFKSPDPEKLS 43
V+ +I P + + DP KLS
Sbjct: 151 VVENLIEPLLSGIYAGDPSKLS 172
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.334 0.147 0.480
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,105,431
Number of extensions: 128552
Number of successful extensions: 682
Number of sequences better than 10.0: 1
Number of HSP's gapped: 676
Number of HSP's successfully gapped: 72
Length of query: 121
Length of database: 5,994,473
Length adjustment: 81
Effective length of query: 40
Effective length of database: 4,244,225
Effective search space: 169769000
Effective search space used: 169769000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 51 (23.4 bits)