RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780852|ref|YP_003065265.1| NADH dehydrogenase subunit A
[Candidatus Liberibacter asiaticus str. psy62]
         (121 letters)



>1z1y_A Ookinete surface protein PVS25; four EGF-like domains,
          cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB:
          1z27_A 1z3g_A (A:52-97)
          Length = 46

 Score = 27.2 bits (60), Expect = 0.80
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 30 FIVAFKSPDPEKLSTYECG 48
          F    ++PDP +++ Y CG
Sbjct: 8  FGQCIENPDPAQVNMYXCG 26


>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein,
           flap DNA, flap endonuclease, sliding clamp, DNA clamp;
           2.90A {Homo sapiens} (X:15-217,X:293-379)
          Length = 290

 Score = 26.2 bits (57), Expect = 1.5
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 34  FKSPDPEKLSTYECGFDPFDDARVK 58
           +  P+ E+L  + CG   F + R++
Sbjct: 208 WSEPNEEELIKFMCGEKQFSEERIR 232


>2v27_A Phenylalanine hydroxylase; cold adaptation,
           tetrahydrobiopterin, stability, flexibility,
           alkaptonuria, oxidoreductase; 1.50A {Colwellia
           psychrerythraea 34H} PDB: 2v28_A (A:1-41,A:150-275)
          Length = 167

 Score = 26.3 bits (58), Expect = 1.6
 Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 6/47 (12%)

Query: 33  AFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAF 79
           A  + D ++       FD  D  R  + I   +  + +++  +    
Sbjct: 86  AMNNTDVDRK-----PFDILDVLRTPYRI-DIMQPIYYMLTKVSDLD 126


>1ltz_A Phenylalanine-4-hydroxylase; oxidoreductase,
           dihydrobiopterin, bacterial enzyme; HET: HBI; 1.40A
           {Chromobacterium violaceum} (A:1-58,A:169-297)
          Length = 187

 Score = 26.0 bits (57), Expect = 1.8
 Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 6/47 (12%)

Query: 33  AFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAF 79
              S  P ++     GFD       ++ I        FVI   +  F
Sbjct: 101 CLDSASPNRV-----GFDLMRIMNTRYRI-DTFQKTYFVIDSFKQLF 141


>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication;
           2.00A {Pyrococcus furiosus} (A:1-211,A:289-340)
          Length = 263

 Score = 25.0 bits (54), Expect = 3.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 34  FKSPDPEKLSTYECGFDPFDDARVK 58
           ++ PD E +  + C    F + RVK
Sbjct: 215 WRDPDEEGILKFLCDEHDFSEERVK 239


>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA
           replication, RTH, RAD27, DNA repair; 2.00A
           {Methanococcus jannaschii} (A:1-209,A:275-326)
          Length = 261

 Score = 24.3 bits (52), Expect = 6.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)

Query: 34  FKSPDPEKLSTYECGFDPFDDARVK 58
            K PD E +  +    + F+  RVK
Sbjct: 213 LKLPDKEGIIKFLVDENDFNYDRVK 237


>3bgy_A Polynucleotide 5'-triphosphatase; RNA capping, tunnel
           triphsophatase, metalloenzyme, beta barrel, hydrolase,
           mRNA capping; 1.65A {Acanthamoeba polyphaga mimivirus}
           PDB: 2qy2_A* 2qze_A (A:)
          Length = 237

 Score = 24.3 bits (52), Expect = 6.6
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 27  ISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIR 62
           I  FI  F       +S Y    DP DD  + +  R
Sbjct: 94  IGEFITKFSKASSNDISRYIVSLDPSDDIEIVYKNR 129


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.334    0.147    0.480 

Gapped
Lambda     K      H
   0.267   0.0408    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,013,942
Number of extensions: 44027
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 19
Length of query: 121
Length of database: 4,956,049
Length adjustment: 72
Effective length of query: 49
Effective length of database: 2,522,089
Effective search space: 123582361
Effective search space used: 123582361
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 50 (23.9 bits)