RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780852|ref|YP_003065265.1| NADH dehydrogenase subunit A [Candidatus Liberibacter asiaticus str. psy62] (121 letters) >1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A (A:52-97) Length = 46 Score = 27.2 bits (60), Expect = 0.80 Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 30 FIVAFKSPDPEKLSTYECG 48 F ++PDP +++ Y CG Sbjct: 8 FGQCIENPDPAQVNMYXCG 26 >1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} (X:15-217,X:293-379) Length = 290 Score = 26.2 bits (57), Expect = 1.5 Identities = 7/25 (28%), Positives = 14/25 (56%) Query: 34 FKSPDPEKLSTYECGFDPFDDARVK 58 + P+ E+L + CG F + R++ Sbjct: 208 WSEPNEEELIKFMCGEKQFSEERIR 232 >2v27_A Phenylalanine hydroxylase; cold adaptation, tetrahydrobiopterin, stability, flexibility, alkaptonuria, oxidoreductase; 1.50A {Colwellia psychrerythraea 34H} PDB: 2v28_A (A:1-41,A:150-275) Length = 167 Score = 26.3 bits (58), Expect = 1.6 Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 6/47 (12%) Query: 33 AFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAF 79 A + D ++ FD D R + I + + +++ + Sbjct: 86 AMNNTDVDRK-----PFDILDVLRTPYRI-DIMQPIYYMLTKVSDLD 126 >1ltz_A Phenylalanine-4-hydroxylase; oxidoreductase, dihydrobiopterin, bacterial enzyme; HET: HBI; 1.40A {Chromobacterium violaceum} (A:1-58,A:169-297) Length = 187 Score = 26.0 bits (57), Expect = 1.8 Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 6/47 (12%) Query: 33 AFKSPDPEKLSTYECGFDPFDDARVKFDIRFCLVSVLFVIFDLEIAF 79 S P ++ GFD ++ I FVI + F Sbjct: 101 CLDSASPNRV-----GFDLMRIMNTRYRI-DTFQKTYFVIDSFKQLF 141 >1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication; 2.00A {Pyrococcus furiosus} (A:1-211,A:289-340) Length = 263 Score = 25.0 bits (54), Expect = 3.7 Identities = 8/25 (32%), Positives = 13/25 (52%) Query: 34 FKSPDPEKLSTYECGFDPFDDARVK 58 ++ PD E + + C F + RVK Sbjct: 215 WRDPDEEGILKFLCDEHDFSEERVK 239 >1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanococcus jannaschii} (A:1-209,A:275-326) Length = 261 Score = 24.3 bits (52), Expect = 6.3 Identities = 8/25 (32%), Positives = 12/25 (48%) Query: 34 FKSPDPEKLSTYECGFDPFDDARVK 58 K PD E + + + F+ RVK Sbjct: 213 LKLPDKEGIIKFLVDENDFNYDRVK 237 >3bgy_A Polynucleotide 5'-triphosphatase; RNA capping, tunnel triphsophatase, metalloenzyme, beta barrel, hydrolase, mRNA capping; 1.65A {Acanthamoeba polyphaga mimivirus} PDB: 2qy2_A* 2qze_A (A:) Length = 237 Score = 24.3 bits (52), Expect = 6.6 Identities = 11/36 (30%), Positives = 14/36 (38%) Query: 27 ISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFDIR 62 I FI F +S Y DP DD + + R Sbjct: 94 IGEFITKFSKASSNDISRYIVSLDPSDDIEIVYKNR 129 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.334 0.147 0.480 Gapped Lambda K H 0.267 0.0408 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,013,942 Number of extensions: 44027 Number of successful extensions: 156 Number of sequences better than 10.0: 1 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 19 Length of query: 121 Length of database: 4,956,049 Length adjustment: 72 Effective length of query: 49 Effective length of database: 2,522,089 Effective search space: 123582361 Effective search space used: 123582361 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 50 (23.9 bits)