RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780852|ref|YP_003065265.1| NADH dehydrogenase subunit A
[Candidatus Liberibacter asiaticus str. psy62]
         (121 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 29/162 (17%), Positives = 46/162 (28%), Gaps = 83/162 (51%)

Query: 19  SAIVIVLMISP--FIVAFKSPDPEKLSTYECGFD-----------------PFDDARVKF 59
             + I L+      +V+   P P+ L     G +                 PF + ++KF
Sbjct: 364 KQVEISLVNGAKNLVVS--GP-PQSL----YGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416

Query: 60  DIRFCLVSVLF-----------VIFDL---EIAF-----LFPWAVY-------------- 86
             RF  V+  F           +  DL    ++F       P  VY              
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--VYDTFDGSDLRVLSGS 474

Query: 87  -----FKQIT-----W---LGFGS--MMVF-------LGILT 106
                   I      W     F +  ++ F       LG+LT
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516


>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
           1r70_B 3cm9_A
          Length = 475

 Score = 25.2 bits (54), Expect = 3.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 32  VAFKSPDPEKLSTYECGFDPFDDARVKFD 60
           +   S  PE  + Y C  DP+   + +FD
Sbjct: 82  MGLSSLRPEDTAVYYCARDPYGGGKSEFD 110


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.334    0.147    0.480 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,142,896
Number of extensions: 50572
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 28
Length of query: 121
Length of database: 5,693,230
Length adjustment: 81
Effective length of query: 40
Effective length of database: 3,729,466
Effective search space: 149178640
Effective search space used: 149178640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 50 (23.4 bits)