RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780852|ref|YP_003065265.1| NADH dehydrogenase subunit A [Candidatus Liberibacter asiaticus str. psy62] (121 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.4 bits (89), Expect = 4e-04 Identities = 29/162 (17%), Positives = 46/162 (28%), Gaps = 83/162 (51%) Query: 19 SAIVIVLMISP--FIVAFKSPDPEKLSTYECGFD-----------------PFDDARVKF 59 + I L+ +V+ P P+ L G + PF + ++KF Sbjct: 364 KQVEISLVNGAKNLVVS--GP-PQSL----YGLNLTLRKAKAPSGLDQSRIPFSERKLKF 416 Query: 60 DIRFCLVSVLF-----------VIFDL---EIAF-----LFPWAVY-------------- 86 RF V+ F + DL ++F P VY Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--VYDTFDGSDLRVLSGS 474 Query: 87 -----FKQIT-----W---LGFGS--MMVF-------LGILT 106 I W F + ++ F LG+LT Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516 >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A Length = 475 Score = 25.2 bits (54), Expect = 3.5 Identities = 9/29 (31%), Positives = 14/29 (48%) Query: 32 VAFKSPDPEKLSTYECGFDPFDDARVKFD 60 + S PE + Y C DP+ + +FD Sbjct: 82 MGLSSLRPEDTAVYYCARDPYGGGKSEFD 110 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.334 0.147 0.480 Gapped Lambda K H 0.267 0.0568 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,142,896 Number of extensions: 50572 Number of successful extensions: 226 Number of sequences better than 10.0: 1 Number of HSP's gapped: 226 Number of HSP's successfully gapped: 28 Length of query: 121 Length of database: 5,693,230 Length adjustment: 81 Effective length of query: 40 Effective length of database: 3,729,466 Effective search space: 149178640 Effective search space used: 149178640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 50 (23.4 bits)