RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780852|ref|YP_003065265.1| NADH dehydrogenase subunit A
[Candidatus Liberibacter asiaticus str. psy62]
         (121 letters)



>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537
          {Pyrococcus furiosus [TaxId: 2261]}
          Length = 322

 Score = 24.8 bits (54), Expect = 2.0
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 35 KSPDPEKLSTYECGFDPFDDAR-VKFDIRFCLVSVLFVIFDLEIAFLF 81
          K   P+K+  Y    DP ++ +   + I       + ++ D E   + 
Sbjct: 13 KKIIPDKIYVYRLFNDPEEELQKEGYSIYRLAYENVGIVIDPENLIIA 60


>d3bz7a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain
          {Dictyostelium discoideum [TaxId: 44689]}
          Length = 46

 Score = 24.8 bits (53), Expect = 2.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 36 SPDPEKLSTYECG 48
          +PDP++  +YECG
Sbjct: 5  NPDPKERDSYECG 17


>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
          carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 250

 Score = 24.0 bits (52), Expect = 3.3
 Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 4/29 (13%)

Query: 40 EKLSTYE----CGFDPFDDARVKFDIRFC 64
           +L  Y+       DP D AR++      
Sbjct: 58 RRLKKYDNCWLALTDPRDVARIESKTVIV 86


>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS)
          {Escherichia coli [TaxId: 562]}
          Length = 315

 Score = 23.7 bits (50), Expect = 4.3
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 7/39 (17%)

Query: 32 VAFKSPDPEKLSTYECGFDPFDD-----AR--VKFDIRF 63
            FK     ++  Y CG   +D       R  V FD+  
Sbjct: 13 EEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVA 51


>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 184

 Score = 23.7 bits (51), Expect = 4.5
 Identities = 10/35 (28%), Positives = 11/35 (31%)

Query: 26 MISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFD 60
          M  PF V     D +            DD R KF 
Sbjct: 31 MFPPFKVRCSGLDKKAKYILLMDIIAADDCRYKFH 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.147    0.480 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 499,400
Number of extensions: 22714
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 24
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 47 (22.2 bits)