BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780852|ref|YP_003065265.1| NADH dehydrogenase subunit A
[Candidatus Liberibacter asiaticus str. psy62]
         (121 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780852|ref|YP_003065265.1| NADH dehydrogenase subunit A [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 121

 Score =  239 bits (611), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MSDLLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFD 60
           MSDLLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFD
Sbjct: 1   MSDLLTSYAPILVFMAIASAIVIVLMISPFIVAFKSPDPEKLSTYECGFDPFDDARVKFD 60

Query: 61  IRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEW 120
           IRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEW
Sbjct: 61  IRFCLVSVLFVIFDLEIAFLFPWAVYFKQITWLGFGSMMVFLGILTVGFIYEWKKGALEW 120

Query: 121 D 121
           D
Sbjct: 121 D 121


>gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 461

 Score = 23.1 bits (48), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 31 IVAFKSPDPEKLSTYECGFDPFDDARV 57
          I  F++ DP  +  Y CG   +D A +
Sbjct: 15 ITEFQAIDPSNIRMYVCGPTVYDFAHI 41


>gi|254780905|ref|YP_003065318.1| glutamate racemase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 271

 Score = 21.6 bits (44), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 2  SDLLTSYAPILVFMAIASAIVIV 24
          SD+L  Y P+L  +A  +A  ++
Sbjct: 69 SDILDKYQPVLSVIACNTAFTLI 91


>gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 273

 Score = 21.6 bits (44), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 10/38 (26%), Positives = 21/38 (55%)

Query: 53  DDARVKFDIRFCLVSVLFVIFDLEIAFLFPWAVYFKQI 90
           +  +++ D+   +V ++F  F + +  L P AVY + I
Sbjct: 85  ETTKLREDVAIAVVYIIFYSFAMFMLSLSPSAVYVENI 122


>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 606

 Score = 21.2 bits (43), Expect = 5.4,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 91  TWLGFGSMMVFLGILTVGFIYE 112
           T LGFG    FLG+L +  I E
Sbjct: 341 TALGFGFRCGFLGLLHLEIIQE 362


>gi|254780944|ref|YP_003065357.1| hypothetical protein CLIBASIA_04215 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 228

 Score = 21.2 bits (43), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 86  YFKQITWLGFGSMMVFLGILTVGF 109
           Y+   +  GFG ++V +GI  VGF
Sbjct: 58  YYCDFSIPGFGLLVVIVGINIVGF 81


>gi|254780404|ref|YP_003064817.1| inositol monophosphatase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 286

 Score = 20.8 bits (42), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 5/26 (19%)

Query: 95  FGSMMVF-----LGILTVGFIYEWKK 115
           FG M +      L ++ + F+YEWK+
Sbjct: 8   FGGMNLLYWYKKLCLMDIDFMYEWKQ 33


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.334    0.147    0.480 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,587
Number of Sequences: 1233
Number of extensions: 2727
Number of successful extensions: 17
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 9
length of query: 121
length of database: 328,796
effective HSP length: 64
effective length of query: 57
effective length of database: 249,884
effective search space: 14243388
effective search space used: 14243388
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 33 (17.3 bits)