HHsearch alignment for GI: 254780853 and conserved domain: COG3260
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=334.50 Aligned_cols=128 Identities=41% Similarity=0.845 Sum_probs=120.4
Q ss_pred CCCCEEEEECC-CC--CCHHHHHHCCCCCCHHHCCEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 28834775235-46--5213566336667867648487068220607997141345569999999984686661998535
Q gi|254780853|r 52 TGSLMWMTFGL-AC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128 (185)
Q Consensus 52 ~~Slwp~~fg~-aC--C~iE~~a~~~p~yD~eRfG~~~~~sPRqADvliVtG~vT~km~~~l~~~yeqmpePK~ViA~G~ 128 (185)
T Consensus 6 ~rS~~v~~VdsG~CNgCdIEi~a~~sP~YDaErfgI~~v~sPRhADiLlVTG~vT~~~~e~lkk~Yea~PePKiViA~Ga 85 (148)
T COG3260 6 KRSLHVYHVDSGGCNGCDIEILAALSPRYDAERFGIKVVNSPRHADILLVTGAVTRQMREPLKKAYEAMPEPKIVIAVGA 85 (148)
T ss_pred CCCEEEEEECCCCCCCEEEEEEECCCCCCCHHHHEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 66359999426886765688754258534367811688479864338999521658889999999973899817999755
Q ss_pred CCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 566886347887220772223223067488768989999999999999964
Q gi|254780853|r 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179 (185)
Q Consensus 129 Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~ 179 (185)
T Consensus 86 Ca~~GGIf~~~~~v~gpvd~viPVDv~IPGCPP~P~~il~g~~~al~~~~k 136 (148)
T COG3260 86 CALSGGIFKDSYSVWGPVDKVIPVDVEIPGCPPRPEAILAGLVAALGKLEK 136 (148)
T ss_pred CCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 435776632565100465534574547279987979999999999888887