HHsearch alignment for GI: 254780853 and conserved domain: COG3260

>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion].
Probab=100.00  E-value=0  Score=334.50  Aligned_cols=128  Identities=41%  Similarity=0.845  Sum_probs=120.4

Q ss_pred             CCCCEEEEECC-CC--CCHHHHHHCCCCCCHHHCCEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             28834775235-46--5213566336667867648487068220607997141345569999999984686661998535
Q gi|254780853|r   52 TGSLMWMTFGL-AC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS  128 (185)
Q Consensus        52 ~~Slwp~~fg~-aC--C~iE~~a~~~p~yD~eRfG~~~~~sPRqADvliVtG~vT~km~~~l~~~yeqmpePK~ViA~G~  128 (185)
T Consensus         6 ~rS~~v~~VdsG~CNgCdIEi~a~~sP~YDaErfgI~~v~sPRhADiLlVTG~vT~~~~e~lkk~Yea~PePKiViA~Ga   85 (148)
T COG3260           6 KRSLHVYHVDSGGCNGCDIEILAALSPRYDAERFGIKVVNSPRHADILLVTGAVTRQMREPLKKAYEAMPEPKIVIAVGA   85 (148)
T ss_pred             CCCEEEEEECCCCCCCEEEEEEECCCCCCCHHHHEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             66359999426886765688754258534367811688479864338999521658889999999973899817999755


Q ss_pred             CCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             566886347887220772223223067488768989999999999999964
Q gi|254780853|r  129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR  179 (185)
Q Consensus       129 Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~  179 (185)
T Consensus        86 Ca~~GGIf~~~~~v~gpvd~viPVDv~IPGCPP~P~~il~g~~~al~~~~k  136 (148)
T COG3260          86 CALSGGIFKDSYSVWGPVDKVIPVDVEIPGCPPRPEAILAGLVAALGKLEK  136 (148)
T ss_pred             CCCCCCEECCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             435776632565100465534574547279987979999999999888887