HHsearch alignment for GI: 254780853 and conserved domain: TIGR03294
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=99.70 E-value=3.1e-17 Score=121.69 Aligned_cols=113 Identities=25% Similarity=0.508 Sum_probs=81.6
Q ss_pred CC--CCHHHHHHCCCCCC-HHHC-CEEE---CCCCC---CCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 46--52135663366678-6764-8487---06822---06079971413455699999999846866619985355668
Q gi|254780853|r 63 AC--CAVEMMQASMPRYD-LERF-GFAP---RASPR---QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132 (185)
Q Consensus 63 aC--C~iE~~a~~~p~yD-~eRf-G~~~---~~sPR---qADvliVtG~vT~km~~~l~~~yeqmpePK~ViA~G~Ca~s 132 (185)
T Consensus 11 gC~GC~lSllD~~E~Lldll~~v~divy~~~l~d~ke~pe~DValVEGsV~~~~e~~le~ikeiRekskilVA~GaCA~~ 90 (228)
T TIGR03294 11 GCTGCLVSLTDNYEGLLDILDNIADLVYCQTLADAREIPEMDVALVEGSVCLQDEHSLEEIKELREKAKVVVALGACAAT 90 (228)
T ss_pred CCCCHHHHHHCCHHHHHHHHHHHHEEEECHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCC
T ss_conf 76653774650315799999752324744011157658885189995501578677799999999868889996412102
Q ss_pred CCCCCC---------CCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 863478---------8722077222322306748876898999999999999
Q gi|254780853|r 133 GGYYHY---------SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 (185)
Q Consensus 133 GG~f~~---------sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ 175 (185)
T Consensus 91 GGI~~~~~ggq~~~P~~e~~~Pi~~vV~VD~~iPGCPP~pe~I~~~~~all~ 142 (228)
T TIGR03294 91 GNFTRYSRGGQQAQPQHESFVPITDVIDVDLAIPGCPPSPEAIRNVCVALLN 142 (228)
T ss_pred CCCCEECCCCCCCCCCCCCCCCHHHEEEECEECCCCCCCHHHHHHHHHHHHC
T ss_conf 8820002588778887555256014476167827998498999999999973