HHsearch alignment of GI: 254780853 and MMDB domain: 1wui_S_1-180
>1wui_S (S:1-180) Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str}
Probab=99.97 E-value=4.6e-33 Score=213.70 Aligned_cols=134 Identities=19% Similarity=0.276 Sum_probs=119.3
Q ss_pred HHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCEE---------------------ECCCCCCCCEEEEECCCCHH
Q ss_conf 845612883477523546521356633666786764848---------------------70682206079971413455
Q gi|254780853|r 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA---------------------PRASPRQSDVMIVAGTLTNK 105 (185)
Q Consensus 47 ~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~~---------------------~~~sPRqADvliVtG~vT~k 105 (185)
.+|.|.+.+|.-..+.+||.+|++.+..|.+|.++||+. +..+|||+|+++|+|.||.+
T Consensus 2 ~~~~k~~i~w~~~~~C~GC~~sll~~~~~~~~~~~~~~i~l~~~~~l~~~~g~~~~~~~~~~~~~~~~diliVeG~v~~~ 81 (180)
T 1wui_S 2 MGPRRPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTA 81 (180)
T ss_dssp CCSSSCEEEEEECBCCSHHHHHHHTCTTTTHHHHHHTTCEEEECTTTCSCCHHHHHHHHHHHHTCTTCEEEEEESBEECG
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHCCCCCHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 98888828998288478649999706998689997588159862520034267899999987435677599983677676
Q ss_pred HH---------HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEE--CCCCC----CCCCEEECCCCCCCHHHHHHHH
Q ss_conf 69---------999999984686661998535566886347887220--77222----3223067488768989999999
Q gi|254780853|r 106 MA---------SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV--RGCDR----IVPVDIYVPGCPPTAEALIYGI 170 (185)
Q Consensus 106 m~---------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~--~g~d~----~iPVDvyVPGCPPrPeail~gl 170 (185)
|. +.+..+|++++++|+|||+|+||+.||+|+.+|+.. .++++ +++||++||||||+||.|+++|
T Consensus 82 ~~~~~~~~~~~~~~e~~~~~~~~ak~vVA~GtCA~~GGi~a~~~~~t~~~~~~~~l~~~~~~di~IpGCPp~pe~i~~~l 161 (180)
T 1wui_S 82 ANGIYGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTI 161 (180)
T ss_dssp GGGTTBEETTEEHHHHHHHHGGGSSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHCCCEEEEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 65302444780499999998404988999842020279655679976650220115557896278589998999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999641
Q gi|254780853|r 171 LLLQKKIRRV 180 (185)
Q Consensus 171 ~~L~~ki~~~ 180 (185)
..|.++++..
T Consensus 162 ~~ll~~~~~p 171 (180)
T 1wui_S 162 VYYLKNKAAP 171 (180)
T ss_dssp HHHHHHSSCC
T ss_pred HHHHHCCCCC
T ss_conf 9998269987