HHsearch alignment of GI: 254780853 and MMDB domain: 1yq9_A_1-177

>1yq9_A (A:1-177) Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas}
Probab=99.97  E-value=6.7e-32  Score=206.89  Aligned_cols=133  Identities=17%  Similarity=0.240  Sum_probs=119.1

Q ss_pred             HHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCEE-------------------ECCCCCCCCEEEEECCCCHHH
Q ss_conf             9845612883477523546521356633666786764848-------------------706822060799714134556
Q gi|254780853|r   46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-------------------PRASPRQSDVMIVAGTLTNKM  106 (185)
Q Consensus        46 l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~~-------------------~~~sPRqADvliVtG~vT~km  106 (185)
                      +.+|.+.+.+|.-..+.+||.++++.+..+.+|..+++..                   +..+|+|+|+++|+|.||.++
T Consensus         1 m~~~~k~~i~w~~~~~C~GC~~s~l~~~~~~~~~~~l~~i~l~y~p~l~~~~~~~~~~~~~~~~~~~diliVEG~v~~~~   80 (177)
T 1yq9_A            1 LTAKKRPSVVYLHNAECTGCSESVLRTVDPYVDELILDVISMDYHETLMAGAGHAVEEALHEAIKGDFVCVIEGGIPMGD   80 (177)
T ss_dssp             ---CCSCEEEEEECBCCSHHHHHHHTCTTTTHHHHHHHTCEEEECTTTCSSCTHHHHHHHHHHTTSSEEEEEESBEECGG
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf             98888995799858848863999971689879999738677864242022324789999975236772898646665788


Q ss_pred             HH---------HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCE------ECCCCCCCCCEEECCCCCCCHHHHHHHHH
Q ss_conf             99---------9999998468666199853556688634788722------07722232230674887689899999999
Q gi|254780853|r  107 AS---------ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV------VRGCDRIVPVDIYVPGCPPTAEALIYGIL  171 (185)
Q Consensus       107 ~~---------~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v------~~g~d~~iPVDvyVPGCPPrPeail~gl~  171 (185)
                      ..         .+..++++++++|+|||+|+||+.||+|+.+|+.      .+.++++++||++||||||+||.|+++|.
T Consensus        81 ~~~~~~~~~~~~~e~i~~~~~~ak~vIA~GtCA~~GGi~~~~~~~t~~~~~~~~~~~~v~vdi~IpGCPp~p~~i~~~l~  160 (177)
T 1yq9_A           81 GGYWGKVGGRNMYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVV  160 (177)
T ss_dssp             GSTTBEETTEEHHHHHHHHGGGSSEEEEEHHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf             86045307812999999986338879996343423886556688667523111365568872870798988899999999


Q ss_pred             HHHHHHH
Q ss_conf             9999996
Q gi|254780853|r  172 LLQKKIR  178 (185)
Q Consensus       172 ~L~~ki~  178 (185)
                      .|.+...
T Consensus       161 ~ll~g~~  167 (177)
T 1yq9_A          161 HLLTKGM  167 (177)
T ss_dssp             HHHHTCS
T ss_pred             HHHHCCC
T ss_conf             9980799