HHsearch alignment of GI: 254780853 and MMDB domain: 1yq9_A_1-177
>1yq9_A (A:1-177) Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas}
Probab=99.97 E-value=6.7e-32 Score=206.89 Aligned_cols=133 Identities=17% Similarity=0.240 Sum_probs=119.1
Q ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCEE-------------------ECCCCCCCCEEEEECCCCHHH
Q ss_conf 9845612883477523546521356633666786764848-------------------706822060799714134556
Q gi|254780853|r 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-------------------PRASPRQSDVMIVAGTLTNKM 106 (185)
Q Consensus 46 l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~~-------------------~~~sPRqADvliVtG~vT~km 106 (185)
+.+|.+.+.+|.-..+.+||.++++.+..+.+|..+++.. +..+|+|+|+++|+|.||.++
T Consensus 1 m~~~~k~~i~w~~~~~C~GC~~s~l~~~~~~~~~~~l~~i~l~y~p~l~~~~~~~~~~~~~~~~~~~diliVEG~v~~~~ 80 (177)
T 1yq9_A 1 LTAKKRPSVVYLHNAECTGCSESVLRTVDPYVDELILDVISMDYHETLMAGAGHAVEEALHEAIKGDFVCVIEGGIPMGD 80 (177)
T ss_dssp ---CCSCEEEEEECBCCSHHHHHHHTCTTTTHHHHHHHTCEEEECTTTCSSCTHHHHHHHHHHTTSSEEEEEESBEECGG
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 98888995799858848863999971689879999738677864242022324789999975236772898646665788
Q ss_pred HH---------HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCE------ECCCCCCCCCEEECCCCCCCHHHHHHHHH
Q ss_conf 99---------9999998468666199853556688634788722------07722232230674887689899999999
Q gi|254780853|r 107 AS---------ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV------VRGCDRIVPVDIYVPGCPPTAEALIYGIL 171 (185)
Q Consensus 107 ~~---------~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v------~~g~d~~iPVDvyVPGCPPrPeail~gl~ 171 (185)
.. .+..++++++++|+|||+|+||+.||+|+.+|+. .+.++++++||++||||||+||.|+++|.
T Consensus 81 ~~~~~~~~~~~~~e~i~~~~~~ak~vIA~GtCA~~GGi~~~~~~~t~~~~~~~~~~~~v~vdi~IpGCPp~p~~i~~~l~ 160 (177)
T 1yq9_A 81 GGYWGKVGGRNMYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVV 160 (177)
T ss_dssp GSTTBEETTEEHHHHHHHHGGGSSEEEEEHHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
T ss_conf 86045307812999999986338879996343423886556688667523111365568872870798988899999999
Q ss_pred HHHHHHH
Q ss_conf 9999996
Q gi|254780853|r 172 LLQKKIR 178 (185)
Q Consensus 172 ~L~~ki~ 178 (185)
.|.+...
T Consensus 161 ~ll~g~~ 167 (177)
T 1yq9_A 161 HLLTKGM 167 (177)
T ss_dssp HHHHTCS
T ss_pred HHHHCCC
T ss_conf 9980799