HHsearch alignment of GI: 254780853 and MMDB domain: 3i9v_6_
>3i9v_6 (6:) NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_6* 3iam_6* 3ias_6*
Probab=100.00 E-value=7e-45 Score=282.47 Aligned_cols=157 Identities=55% Similarity=1.007 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCE-EECCCCCCCCEEEEECCC
Q ss_conf 2577766754108768855999984561288347752354652135663366678676484-870682206079971413
Q gi|254780853|r 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTL 102 (185)
Q Consensus 24 ~~~~~~~~~~~~~~~i~t~~d~l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~-~~~~sPRqADvliVtG~v 102 (185)
+.+.....+.+..+++.++.+++.||+|.+++|+.++|++||.+|++++..+.+|++|||. .++++|||||+++|+|+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iw~~~~~C~GC~~s~l~~~~~~~~~~~~~~~~~~~~~~~aDiliveG~v 84 (181)
T 3i9v_6 5 DLFERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRL 84 (181)
T ss_dssp ----------CTTSHHHHHHHHHHHHHHTTSCCCEEEECSTHHHHHTTTTTTC----------------CCCCEEEESCC
T ss_pred HHHHHHHHHHHHCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 56788899876478388579999889982787502135764332343313888634205451147898768789970633
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 4556999999998468666199853556688634788722077222322306748876898999999999999996412
Q gi|254780853|r 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181 (185)
Q Consensus 103 T~km~~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~~~ 181 (185)
|.+|.+.++++||++|+||+|||+|+||++||+|. +|+..+|++++++||+|||||||+||+|+++|..|++++..+-
T Consensus 85 ~~~~~~~~~~~~e~~~~ak~vVA~G~CA~~GGi~~-~~~~~~gv~~~i~vd~~IpGCPp~Pe~i~~~l~~l~~~~~~~~ 162 (181)
T 3i9v_6 85 SKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFN-NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQA 162 (181)
T ss_dssp BTTTHHHHHHHHHSSCSSCCEEEEHHHHHSCTTCC-STTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 07779999999984899856997454466797057-7644478454675775778988599999999999999986323