HHsearch alignment of GI: 254780853 and MMDB domain: 3i9v_6_

>3i9v_6 (6:) NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_6* 3iam_6* 3ias_6*
Probab=100.00  E-value=7e-45  Score=282.47  Aligned_cols=157  Identities=55%  Similarity=1.007  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCE-EECCCCCCCCEEEEECCC
Q ss_conf             2577766754108768855999984561288347752354652135663366678676484-870682206079971413
Q gi|254780853|r   24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTL  102 (185)
Q Consensus        24 ~~~~~~~~~~~~~~~i~t~~d~l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~-~~~~sPRqADvliVtG~v  102 (185)
                      +.+.....+.+..+++.++.+++.||+|.+++|+.++|++||.+|++++..+.+|++|||. .++++|||||+++|+|+|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~iw~~~~~C~GC~~s~l~~~~~~~~~~~~~~~~~~~~~~~aDiliveG~v   84 (181)
T 3i9v_6            5 DLFERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRL   84 (181)
T ss_dssp             ----------CTTSHHHHHHHHHHHHHHTTSCCCEEEECSTHHHHHTTTTTTC----------------CCCCEEEESCC
T ss_pred             HHHHHHHHHHHHCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCHHCCCCCCCCCCCCCCCEEEEECCC
T ss_conf             56788899876478388579999889982787502135764332343313888634205451147898768789970633


Q ss_pred             CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             4556999999998468666199853556688634788722077222322306748876898999999999999996412
Q gi|254780853|r  103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG  181 (185)
Q Consensus       103 T~km~~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~~~  181 (185)
                      |.+|.+.++++||++|+||+|||+|+||++||+|. +|+..+|++++++||+|||||||+||+|+++|..|++++..+-
T Consensus        85 ~~~~~~~~~~~~e~~~~ak~vVA~G~CA~~GGi~~-~~~~~~gv~~~i~vd~~IpGCPp~Pe~i~~~l~~l~~~~~~~~  162 (181)
T 3i9v_6           85 SKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFN-NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQA  162 (181)
T ss_dssp             BTTTHHHHHHHHHSSCSSCCEEEEHHHHHSCTTCC-STTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             07779999999984899856997454466797057-7644478454675775778988599999999999999986323