HHsearch results for GI: 254780853 and protein with PDBid: 1yq9_A
>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A
Probab=99.81 E-value=1.1e-20 Score=140.60 Aligned_cols=121 Identities=17% Similarity=0.366 Sum_probs=93.6
Q ss_pred CCEEEEECCCC--CCHHHHHHCCCCCC--H-HHCCEEECC----------------CCCCCCEEEEECCCCHHHH-----
Q ss_conf 83477523546--52135663366678--6-764848706----------------8220607997141345569-----
Q gi|254780853|r 54 SLMWMTFGLAC--CAVEMMQASMPRYD--L-ERFGFAPRA----------------SPRQSDVMIVAGTLTNKMA----- 107 (185)
Q Consensus 54 Slwp~~fg~aC--C~iE~~a~~~p~yD--~-eRfG~~~~~----------------sPRqADvliVtG~vT~km~----- 107 (185)
++-+++++ +| |.++++.+..|.+| + +.+-+.+.. .+++.||++|+|.|+.++.
T Consensus 8 ~viWl~~~-~C~GC~iS~L~~~~p~l~~~l~~~i~l~y~p~l~~~~g~~~~~~~~~~~~g~~IlvVEGsI~~~~~g~~~~ 86 (264)
T 1yq9_A 8 SVVYLHNA-ECTGCSESVLRTVDPYVDELILDVISMDYHETLMAGAGHAVEEALHEAIKGDFVCVIEGGIPMGDGGYWGK 86 (264)
T ss_dssp EEEEEECB-CCSHHHHHHHTCTTTTHHHHHHHTCEEEECTTTCSSCTHHHHHHHHHHTTSSEEEEEESBEECGGGSTTBE
T ss_pred CEEEEECC-CCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf 47998488-38735999973799869999627667975250203527899999975135774899735665688861453
Q ss_pred ----HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCE------ECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf ----99999998468666199853556688634788722------077222322306748876898999999999999
Q gi|254780853|r 108 ----SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175 (185)
Q Consensus 108 ----~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v------~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ 175 (185)
+.+..+++.++++|+|||+|+||+.||++...++. ...+++.+++|++||||||+||.|++.|..|..
T Consensus 87 ~~~~~~~e~l~~l~~kak~VVA~GsCA~~GGI~a~~~n~t~~~~~~~~l~~~~~~vi~IPGCPp~p~~i~~~l~~ll~ 164 (264)
T 1yq9_A 87 VGGRNMYDICAEVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVGTVVHLLT 164 (264)
T ss_dssp ETTEEHHHHHHHHGGGSSEEEEEHHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHCCCEEEEEECHHHCCCCCCCCCCCCCCEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 268039999999974487799960213138854457887675522435665688636717999899999999999973