HHSEARCH alignment of GI: 254780853 and SCOP domain: d1cc1s_

Alignment
>d1cc1s_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfomicrobium baculatum [TaxId: 899]}
Probab=99.82  E-value=8.7e-22  Score=145.60  Aligned_cols=121  Identities=20%  Similarity=0.444  Sum_probs=94.9

Q ss_pred             CEEEEECCCC--CCHHHHHHCCCCCC--H-HHCCEEE-------------------CCCCCCCCEEEEECCCCHHHH---
Q ss_conf             3477523546--52135663366678--6-7648487-------------------068220607997141345569---
Q gi|254780853|r   55 LMWMTFGLAC--CAVEMMQASMPRYD--L-ERFGFAP-------------------RASPRQSDVMIVAGTLTNKMA---  107 (185)
Q Consensus        55 lwp~~fg~aC--C~iE~~a~~~p~yD--~-eRfG~~~-------------------~~sPRqADvliVtG~vT~km~---  107 (185)
                      +.+++++ +|  |.+++..+..|..|  + +.+-+.+                   ...+++.|+++|+|.|..+.-   
T Consensus         5 vvWl~~~-sC~GC~iS~ln~~~p~l~~~ll~~i~l~yhp~l~~~~g~~~~~~~~~~~~~~~~~dillVEGsI~~~~~~~~   83 (278)
T d1cc1s_           5 VIWVQGQ-GCTGCSVSLLNAVHPRIKEILLDVISLEFHPTVMASEGEMALAHMYEIAEKFNGNFFLLVEGAIPTAKEGRY   83 (278)
T ss_dssp             EEEEESB-CCSHHHHHHHTCBTTBHHHHHHHTEEEEECTTTCSCCHHHHHHHHHHHHHHTTTSSEEEEESBEECGGGGTT
T ss_pred             EEEECCC-CCCCHHHHHHCCCCCCHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEE
T ss_conf             8986388-788639999767998889997323777653102023037899999998635678828984267678766512


Q ss_pred             ----------------HHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCEEC--------CCCCCCCCEEECCCCCCCH
Q ss_conf             ----------------9999999846866619985355668863478872207--------7222322306748876898
Q gi|254780853|r  108 ----------------SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--------GCDRIVPVDIYVPGCPPTA  163 (185)
Q Consensus       108 ----------------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~--------g~d~~iPVDvyVPGCPPrP  163 (185)
                                      +.+..+.+..++.|+|||+|+||+.||++..+++..+        +.++++++|++||||||+|
T Consensus        84 ~~~g~~~~~~~~~~~~~~~e~~~~l~~kak~vVAvGtCA~~GGI~a~~~n~t~~~~~~~~~~~~~~~~~~i~IpGCPp~p  163 (278)
T d1cc1s_          84 CIVGETLDAKAHHHEVTMMELIRDLAPKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLLVNVPGCPPHP  163 (278)
T ss_dssp             BEEEC---CCSSSCCEEHHHHHHHHGGGSSEEEEESHHHHHCTGGGSTTCCSCEECHHHHHHHHTCCCCEEEECCSSCCH
T ss_pred             EEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCCCH
T ss_conf             44236555544446755999999997309889998533102796545578763521120057677578644558989877


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999999
Q gi|254780853|r  164 EALIYGILLLQKK  176 (185)
Q Consensus       164 eail~gl~~L~~k  176 (185)
                      +.|++.|..+..-
T Consensus       164 d~i~~tl~~~l~~  176 (278)
T d1cc1s_         164 DWMVGTLVAAWSH  176 (278)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             8888879999986


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfomicrobium baculatum [TaxId: 899]