HHSEARCH alignment of GI: 254780853 and SCOP domain: d1frfs_

Alignment
>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfovibrio fructosovorans [TaxId: 878]}
Probab=99.84  E-value=2.5e-22  Score=148.71  Aligned_cols=120  Identities=18%  Similarity=0.451  Sum_probs=99.3

Q ss_pred             CEEEEECCCC--CCHHHHHHCCCCCC---HHHCCEEECC------------------CCCCCCEEEEECCCCHHHH----
Q ss_conf             3477523546--52135663366678---6764848706------------------8220607997141345569----
Q gi|254780853|r   55 LMWMTFGLAC--CAVEMMQASMPRYD---LERFGFAPRA------------------SPRQSDVMIVAGTLTNKMA----  107 (185)
Q Consensus        55 lwp~~fg~aC--C~iE~~a~~~p~yD---~eRfG~~~~~------------------sPRqADvliVtG~vT~km~----  107 (185)
                      +.+++++ +|  |.++++.+..|.+|   ++.+-+.+..                  ++++.|+++|+|.|+.++.    
T Consensus         6 ViWl~~~-~C~GCs~S~l~~~~p~l~~~l~~~i~l~y~p~lm~~~g~~~~~~l~~~~~~~~~~vl~VEGsV~~~~~g~~~   84 (261)
T d1frfs_           6 VVWLHNA-ECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGETSEAALHEALEGKDGYYLVVEGGLPTIDGGQWG   84 (261)
T ss_dssp             EEEEECB-CCSHHHHHHTTCTTTTHHHHHHHTCEEEECTTTCSCCHHHHHHHHHHHHHCSSCCEEEEESBEECHHHHTTB
T ss_pred             EEEEECC-CCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEE
T ss_conf             8998488-388629999746998689997487469751643211136799999987505677179986477348896046


Q ss_pred             -----HHHHHHHHHCCCCCEEEEECCCCCCCCCC--CCCCCEECCCCCCCCCEE-ECCCCCCCHHHHHHHHHHHHH
Q ss_conf             -----99999998468666199853556688634--788722077222322306-748876898999999999999
Q gi|254780853|r  108 -----SALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDI-YVPGCPPTAEALIYGILLLQK  175 (185)
Q Consensus       108 -----~~l~~~yeqmpePK~ViA~G~Ca~sGG~f--~~sY~v~~g~d~~iPVDv-yVPGCPPrPeail~gl~~L~~  175 (185)
                           +.+.++++..+.+|+|||+|+||+.||++  ..++.-..|+++++++|+ +||||||+|+.|+.+|..|..
T Consensus        85 ~~~~~~~~e~~~~~~~~ak~vIAvGtCA~~GGI~a~~~n~t~~~~v~~~i~~~vinIpGCPp~p~~i~~~l~~ll~  160 (261)
T d1frfs_          85 MVAGHPMIETCKKAAAKAKGIICIGTCSPYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLT  160 (261)
T ss_dssp             EETTEEHHHHHHHHHHHCSEEEEETTHHHHCCSTTSTTCTTCEECHHHHHTSCCEEECSSSCCHHHHHHHHHHHHT
T ss_pred             EECCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             5469449999997605787899984351227864557997655475562687658716999999999999999982


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio fructosovorans [TaxId: 878]