HHSEARCH alignment of GI: 254780853 and SCOP domain: d1wuis1

Alignment
>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit {Desulfovibrio vulgaris [TaxId: 881]}
Probab=99.88  E-value=5.7e-24  Score=158.31  Aligned_cols=126  Identities=20%  Similarity=0.323  Sum_probs=99.6

Q ss_pred             HCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCC-EEECCC--------------------CCCCCEEEEECCCCHHHH--
Q ss_conf             128834775235465213566336667867648-487068--------------------220607997141345569--
Q gi|254780853|r   51 RTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRAS--------------------PRQSDVMIVAGTLTNKMA--  107 (185)
Q Consensus        51 R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG-~~~~~s--------------------PRqADvliVtG~vT~km~--  107 (185)
                      |-+.+|.-.-+.++|.++++.+..|.+|...++ +.++-+                    ++++||++|+|.|+.++.  
T Consensus         6 rp~v~Wl~~~~C~GC~iSlL~~~~p~~d~~~~~~i~l~y~p~lm~~~g~~~~~~~~~~~~~~~~dilvVEGsI~~~~~~~   85 (267)
T d1wuis1           6 RPSVVYLHNAECTGCSESVLRAFEPYIDTLILDTLSLDYHETIMAAAGDAAEAALEQAVNSPHGFIAVVEGGIPTAANGI   85 (267)
T ss_dssp             SCEEEEEECBCCSHHHHHHHTCTTTTHHHHHHTTCEEEECTTTCSCCHHHHHHHHHHHHTCTTCEEEEEESBEECGGGGT
T ss_pred             CCCEEEEECCCCCCHHHHHHCCCCCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCC
T ss_conf             88189983884787399997269987899975883698625321221478999999975366774999825667655432


Q ss_pred             -------HHHHHHHHHCCCCCEEEEECCCCCCCCCCC--CCCCEECCCC----CCCCCEEECCCCCCCHHHHHHHHHHHH
Q ss_conf             -------999999984686661998535566886347--8872207722----232230674887689899999999999
Q gi|254780853|r  108 -------SALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCD----RIVPVDIYVPGCPPTAEALIYGILLLQ  174 (185)
Q Consensus       108 -------~~l~~~yeqmpePK~ViA~G~Ca~sGG~f~--~sY~v~~g~d----~~iPVDvyVPGCPPrPeail~gl~~L~  174 (185)
                             +.+.++++.++++|+|||+|+||+.||++.  .++....+++    +++.||+|||||||+|+.|+..|..+.
T Consensus        86 ~~~~~~~~~~e~v~~~r~~ak~vVAvGtCA~~GGI~a~~~~~t~~~~~~~~l~~~~~vdi~IpGCPp~p~~i~~~l~~~l  165 (267)
T d1wuis1          86 YGKVANHTMLDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGVKAINIAGCPPNPYNLVGTIVYYL  165 (267)
T ss_dssp             TBEETTEEHHHHHHHHGGGSSEEEEESHHHHHCCGGGSTTCTTCEECHHHHHGGGTCCCEEECSSSCCHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHCCCEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             02127804999999984249889995030104786666799766423533344568972784898989999999999998


Q ss_pred             HH
Q ss_conf             99
Q gi|254780853|r  175 KK  176 (185)
Q Consensus       175 ~k  176 (185)
                      ..
T Consensus       166 ~~  167 (267)
T d1wuis1         166 KN  167 (267)
T ss_dssp             HH
T ss_pred             HC
T ss_conf             35


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nickel-iron hydrogenase, small subunit
domain: Nickel-iron hydrogenase, small subunit
species: Desulfovibrio vulgaris [TaxId: 881]