HHSEARCH alignment of GI: 254780853 and SCOP domain: d2fug61

Alignment
>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6, Nqo6 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=456.96  Aligned_cols=147  Identities=56%  Similarity=1.045  Sum_probs=142.5

Q ss_pred             HCCEEEEEHHHHHHHHHCCCCEEEEECCCCCCHHHHHHCCCCCCHHHCCEE-ECCCCCCCCEEEEECCCCHHHHHHHHHH
Q ss_conf             087688559999845612883477523546521356633666786764848-7068220607997141345569999999
Q gi|254780853|r   35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRV  113 (185)
Q Consensus        35 ~~~~i~t~~d~l~nW~R~~Slwp~~fg~aCC~iE~~a~~~p~yD~eRfG~~-~~~sPRqADvliVtG~vT~km~~~l~~~  113 (185)
                      ++|+++|++|+++||+|++|+||+|||++||+|||+++.+|+||+||||+. |++||||||+|||+|+||+||+++|+++
T Consensus         2 ~~~~i~t~~~~~~nw~r~~Slw~~~~g~~cC~iE~~a~~~p~yD~eRfG~~~~~~sPR~ADvllVtG~vT~km~~~l~~~   81 (161)
T d2fug61           2 REGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRV   81 (161)
T ss_dssp             TTSHHHHHHHHHHHHHHHHCCCCCCEECSHHHHHTGGGCCC-----------------CCCCEEEESCCBTTTHHHHHHH
T ss_pred             CCCEEEEEHHHHHHHHHHCCCCEEECCCCCCHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf             88568756999988998088730020556308777531387665666234235788654767897063308889999999


Q ss_pred             HHHCCCCCEEEEECCCCCCCCCCCCCCCEECCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             984686661998535566886347887220772223223067488768989999999999999964126
Q gi|254780853|r  114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN  182 (185)
Q Consensus       114 yeqmpePK~ViA~G~Ca~sGG~f~~sY~v~~g~d~~iPVDvyVPGCPPrPeail~gl~~L~~ki~~~~~  182 (185)
                      ||||||||||||+|+||++||+| +||++++|+|++||||+||||||||||+||+||++||+||+++..
T Consensus        82 y~qmPePK~VIA~GaCa~sGG~f-~~y~v~~gvd~~iPVDvyIPGCPPrPeail~gl~~l~~ki~~~~~  149 (161)
T d2fug61          82 WEQMPDPKWVISMGACASSGGMF-NNYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVRGQAY  149 (161)
T ss_dssp             HHTSCSSCCEEEEHHHHHSCTTC-CSTTBCSCGGGTSCCSEEECCSSCCHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHCCCCCEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             99678976699855445678766-876445785755767516899874989999999999999863000


SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: HydA/Nqo6-like
superfamily: HydA/Nqo6-like
family: Nq06-like
domain: NAD-quinone oxidoreductase chain 6, Nqo6
species: Thermus thermophilus [TaxId: 274]