BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B
[Candidatus Liberibacter asiaticus str. psy62]
(185 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040530|gb|ACT57326.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus
str. psy62]
Length = 185
Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats.
Identities = 185/185 (100%), Positives = 185/185 (100%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF
Sbjct: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP
Sbjct: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV
Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
Query: 181 GNVKC 185
GNVKC
Sbjct: 181 GNVKC 185
>gi|260545498|ref|ZP_05821239.1| NADH-quinone oxidoreductase subunit C/D [Brucella abortus NCTC
8038]
gi|297248157|ref|ZP_06931875.1| NADH dehydrogenase I subunit B [Brucella abortus bv. 5 str. B3196]
gi|260096905|gb|EEW80780.1| NADH-quinone oxidoreductase subunit C/D [Brucella abortus NCTC
8038]
gi|297175326|gb|EFH34673.1| NADH dehydrogenase I subunit B [Brucella abortus bv. 5 str. B3196]
Length = 200
Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats.
Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEK--------VDADFSRISSEITHKGFLVTSVDQLVTWART 52
MGLT N +++ Q L+ DA F+ ++ E++ KGF+VTS D L+TWART
Sbjct: 8 MGLTGTNTTLVAPQPKGILDPRTGKTVGSDDAFFNDLNGELSDKGFIVTSADALITWART 67
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 68 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 127
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL
Sbjct: 128 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 187
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G ++
Sbjct: 188 LQKKIRRTGTIE 199
>gi|62289752|ref|YP_221545.1| NADH dehydrogenase subunit B [Brucella abortus bv. 1 str. 9-941]
gi|82699680|ref|YP_414254.1| NADH dehydrogenase subunit B [Brucella melitensis biovar Abortus
2308]
gi|189023997|ref|YP_001934765.1| NADH dehydrogenase subunit B [Brucella abortus S19]
gi|237815239|ref|ZP_04594237.1| NADH-quinone oxidoreductase, B subunit [Brucella abortus str. 2308
A]
gi|254689059|ref|ZP_05152313.1| NADH dehydrogenase subunit B [Brucella abortus bv. 6 str. 870]
gi|254697193|ref|ZP_05159021.1| NADH dehydrogenase subunit B [Brucella abortus bv. 2 str. 86/8/59]
gi|254730089|ref|ZP_05188667.1| NADH dehydrogenase subunit B [Brucella abortus bv. 4 str. 292]
gi|256257308|ref|ZP_05462844.1| NADH dehydrogenase subunit B [Brucella abortus bv. 9 str. C68]
gi|260754557|ref|ZP_05866905.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
gi|260757778|ref|ZP_05870126.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
gi|260761603|ref|ZP_05873946.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
gi|260883584|ref|ZP_05895198.1| NADH-quinone oxidoreductase subunit B [Brucella abortus bv. 9 str.
C68]
gi|75496975|sp|Q57DV0|NUOB_BRUAB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|123546615|sp|Q2YNC8|NUOB_BRUA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218527975|sp|B2S544|NUOB_BRUA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|62195884|gb|AAX74184.1| NuoB, NADH dehydrogenase I, B subunit [Brucella abortus bv. 1 str.
9-941]
gi|82615781|emb|CAJ10779.1| NADH ubiquinone oxidoreductase domain, 20 kDa subunit:NADH
dehydrogenase (ubiquinone), 20 kDa subunit [Brucella
melitensis biovar Abortus 2308]
gi|189019569|gb|ACD72291.1| NADH dehydrogenase beta subunit [Brucella abortus S19]
gi|237790076|gb|EEP64286.1| NADH-quinone oxidoreductase, B subunit [Brucella abortus str. 2308
A]
gi|260668096|gb|EEX55036.1| NADH-quinone oxidoreductase [Brucella abortus bv. 4 str. 292]
gi|260672035|gb|EEX58856.1| NADH-quinone oxidoreductase [Brucella abortus bv. 2 str. 86/8/59]
gi|260674665|gb|EEX61486.1| NADH-quinone oxidoreductase [Brucella abortus bv. 6 str. 870]
gi|260873112|gb|EEX80181.1| NADH-quinone oxidoreductase subunit B [Brucella abortus bv. 9 str.
C68]
Length = 193
Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats.
Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEK--------VDADFSRISSEITHKGFLVTSVDQLVTWART 52
MGLT N +++ Q L+ DA F+ ++ E++ KGF+VTS D L+TWART
Sbjct: 1 MGLTGTNTTLVAPQPKGILDPRTGKTVGSDDAFFNDLNGELSDKGFIVTSADALITWART 60
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 180
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192
>gi|17987440|ref|NP_540074.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 1 str. 16M]
gi|260563836|ref|ZP_05834322.1| NADH-quinone oxidoreductase subunit C/D [Brucella melitensis bv. 1
str. 16M]
gi|260566633|ref|ZP_05837103.1| NADH-quinone oxidoreductase subunit C/D [Brucella suis bv. 4 str.
40]
gi|17983133|gb|AAL52338.1| NADH-quinone oxidoreductase chain b [Brucella melitensis bv. 1 str.
16M]
gi|260153852|gb|EEW88944.1| NADH-quinone oxidoreductase subunit C/D [Brucella melitensis bv. 1
str. 16M]
gi|260156151|gb|EEW91231.1| NADH-quinone oxidoreductase subunit C/D [Brucella suis bv. 4 str.
40]
Length = 200
Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats.
Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEK--------VDADFSRISSEITHKGFLVTSVDQLVTWART 52
MGLT N +++ Q L+ DA F+ ++ E++ KGF+VTS D L+TWART
Sbjct: 8 MGLTGTNTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNGELSDKGFIVTSADALITWART 67
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 68 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 127
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL
Sbjct: 128 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 187
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G ++
Sbjct: 188 LQKKIRRTGTIE 199
>gi|23501690|ref|NP_697817.1| NADH dehydrogenase subunit B [Brucella suis 1330]
gi|148559527|ref|YP_001258781.1| NADH dehydrogenase subunit B [Brucella ovis ATCC 25840]
gi|161618767|ref|YP_001592654.1| NADH dehydrogenase subunit B [Brucella canis ATCC 23365]
gi|163843076|ref|YP_001627480.1| NADH dehydrogenase subunit B [Brucella suis ATCC 23445]
gi|225627300|ref|ZP_03785337.1| NADH-quinone oxidoreductase, B subunit [Brucella ceti str. Cudo]
gi|225852319|ref|YP_002732552.1| NADH dehydrogenase subunit B [Brucella melitensis ATCC 23457]
gi|254693541|ref|ZP_05155369.1| NADH dehydrogenase subunit B [Brucella abortus bv. 3 str. Tulya]
gi|254701571|ref|ZP_05163399.1| NADH dehydrogenase subunit B [Brucella suis bv. 5 str. 513]
gi|254704118|ref|ZP_05165946.1| NADH dehydrogenase subunit B [Brucella suis bv. 3 str. 686]
gi|254706982|ref|ZP_05168810.1| NADH dehydrogenase subunit B [Brucella pinnipedialis M163/99/10]
gi|254709911|ref|ZP_05171722.1| NADH dehydrogenase subunit B [Brucella pinnipedialis B2/94]
gi|254713912|ref|ZP_05175723.1| NADH dehydrogenase subunit B [Brucella ceti M644/93/1]
gi|254717030|ref|ZP_05178841.1| NADH dehydrogenase subunit B [Brucella ceti M13/05/1]
gi|254718912|ref|ZP_05180723.1| NADH dehydrogenase subunit B [Brucella sp. 83/13]
gi|256031404|ref|ZP_05445018.1| NADH dehydrogenase subunit B [Brucella pinnipedialis M292/94/1]
gi|256044482|ref|ZP_05447386.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 1 str. Rev.1]
gi|256060915|ref|ZP_05451073.1| NADH dehydrogenase subunit B [Brucella neotomae 5K33]
gi|256113333|ref|ZP_05454195.1| NADH dehydrogenase subunit B [Brucella melitensis bv. 3 str. Ether]
gi|256159525|ref|ZP_05457293.1| NADH dehydrogenase subunit B [Brucella ceti M490/95/1]
gi|256254812|ref|ZP_05460348.1| NADH dehydrogenase subunit B [Brucella ceti B1/94]
gi|256264182|ref|ZP_05466714.1| NADH dehydrogenase beta subunit [Brucella melitensis bv. 2 str.
63/9]
gi|256369235|ref|YP_003106743.1| NADH dehydrogenase beta subunit [Brucella microti CCM 4915]
gi|260168538|ref|ZP_05755349.1| NADH dehydrogenase subunit B [Brucella sp. F5/99]
gi|261213806|ref|ZP_05928087.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
gi|261218837|ref|ZP_05933118.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M13/05/1]
gi|261221993|ref|ZP_05936274.1| NADH-quinone oxidoreductase subunit B [Brucella ceti B1/94]
gi|261314445|ref|ZP_05953642.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
M163/99/10]
gi|261317457|ref|ZP_05956654.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
B2/94]
gi|261321664|ref|ZP_05960861.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M644/93/1]
gi|261324915|ref|ZP_05964112.1| NADH-quinone oxidoreductase subunit B [Brucella neotomae 5K33]
gi|261752124|ref|ZP_05995833.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 5 str.
513]
gi|261754784|ref|ZP_05998493.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 3 str.
686]
gi|261758011|ref|ZP_06001720.1| NADH dehydrogenase subunit B [Brucella sp. F5/99]
gi|265983899|ref|ZP_06096634.1| NADH-quinone oxidoreductase subunit B [Brucella sp. 83/13]
gi|265988493|ref|ZP_06101050.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
M292/94/1]
gi|265990906|ref|ZP_06103463.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 1
str. Rev.1]
gi|265994743|ref|ZP_06107300.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 3
str. Ether]
gi|265997957|ref|ZP_06110514.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M490/95/1]
gi|294852160|ref|ZP_06792833.1| NADH-quinone oxidoreductase subunit B [Brucella sp. NVSL 07-0026]
gi|306838240|ref|ZP_07471092.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. NF 2653]
gi|306841959|ref|ZP_07474636.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO2]
gi|306843740|ref|ZP_07476339.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO1]
gi|81752805|sp|Q8G1B6|NUOB_BRUSU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218527976|sp|A9MAI0|NUOB_BRUC2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218527977|sp|A5VPY4|NUOB_BRUO2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218527978|sp|B0CLD0|NUOB_BRUSI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528072|sp|Q8YGK1|NUOB_BRUME RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|254767790|sp|C0RIE0|NUOB_BRUMB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|23347612|gb|AAN29732.1| NADH dehydrogenase I, B subunit [Brucella suis 1330]
gi|148370784|gb|ABQ60763.1| NADH dehydrogenase I, B subunit [Brucella ovis ATCC 25840]
gi|161335578|gb|ABX61883.1| NADH-quinone oxidoreductase, B subunit [Brucella canis ATCC 23365]
gi|163673799|gb|ABY37910.1| NADH-quinone oxidoreductase, B subunit [Brucella suis ATCC 23445]
gi|225617305|gb|EEH14350.1| NADH-quinone oxidoreductase, B subunit [Brucella ceti str. Cudo]
gi|225640684|gb|ACO00598.1| NADH-quinone oxidoreductase, B subunit [Brucella melitensis ATCC
23457]
gi|255999395|gb|ACU47794.1| NADH dehydrogenase beta subunit [Brucella microti CCM 4915]
gi|260915413|gb|EEX82274.1| NADH-quinone oxidoreductase [Brucella abortus bv. 3 str. Tulya]
gi|260920577|gb|EEX87230.1| NADH-quinone oxidoreductase subunit B [Brucella ceti B1/94]
gi|260923926|gb|EEX90494.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M13/05/1]
gi|261294354|gb|EEX97850.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M644/93/1]
gi|261296680|gb|EEY00177.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
B2/94]
gi|261300895|gb|EEY04392.1| NADH-quinone oxidoreductase subunit B [Brucella neotomae 5K33]
gi|261303471|gb|EEY06968.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
M163/99/10]
gi|261737995|gb|EEY25991.1| NADH dehydrogenase subunit B [Brucella sp. F5/99]
gi|261741877|gb|EEY29803.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 5 str.
513]
gi|261744537|gb|EEY32463.1| NADH-quinone oxidoreductase subunit B [Brucella suis bv. 3 str.
686]
gi|262552425|gb|EEZ08415.1| NADH-quinone oxidoreductase subunit B [Brucella ceti M490/95/1]
gi|262765856|gb|EEZ11645.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 3
str. Ether]
gi|263001690|gb|EEZ14265.1| NADH-quinone oxidoreductase subunit B [Brucella melitensis bv. 1
str. Rev.1]
gi|263094400|gb|EEZ18245.1| NADH dehydrogenase beta subunit [Brucella melitensis bv. 2 str.
63/9]
gi|264660690|gb|EEZ30951.1| NADH-quinone oxidoreductase subunit B [Brucella pinnipedialis
M292/94/1]
gi|264662491|gb|EEZ32752.1| NADH-quinone oxidoreductase subunit B [Brucella sp. 83/13]
gi|294820749|gb|EFG37748.1| NADH-quinone oxidoreductase subunit B [Brucella sp. NVSL 07-0026]
gi|306275931|gb|EFM57644.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO1]
gi|306287950|gb|EFM59361.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. BO2]
gi|306406684|gb|EFM62911.1| NADH-quinone oxidoreductase, B subunit [Brucella sp. NF 2653]
gi|326408826|gb|ADZ65891.1| NADH dehydrogenase subunit B [Brucella melitensis M28]
Length = 193
Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats.
Identities = 144/192 (75%), Positives = 160/192 (83%), Gaps = 8/192 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEK--------VDADFSRISSEITHKGFLVTSVDQLVTWART 52
MGLT N +++ Q L+ DA F+ ++ E++ KGF+VTS D L+TWART
Sbjct: 1 MGLTGTNTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNGELSDKGFIVTSADALITWART 60
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILL 180
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192
>gi|153009751|ref|YP_001370966.1| NADH dehydrogenase subunit B [Ochrobactrum anthropi ATCC 49188]
gi|218527999|sp|A6X1N3|NUOB_OCHA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|151561639|gb|ABS15137.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum anthropi ATCC
49188]
Length = 193
Score = 253 bits (647), Expect = 7e-66, Method: Composition-based stats.
Identities = 145/192 (75%), Positives = 162/192 (84%), Gaps = 8/192 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEK--------VDADFSRISSEITHKGFLVTSVDQLVTWART 52
MGLTT N +++ Q L+ DA F+ ++SE++ KGF+VTS D L+TWART
Sbjct: 1 MGLTTANTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNSELSDKGFIVTSADALITWART 60
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGIL+
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILM 180
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192
>gi|239831687|ref|ZP_04680016.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum intermedium
LMG 3301]
gi|239823954|gb|EEQ95522.1| NADH-quinone oxidoreductase, B subunit [Ochrobactrum intermedium
LMG 3301]
Length = 193
Score = 253 bits (646), Expect = 9e-66, Method: Composition-based stats.
Identities = 144/192 (75%), Positives = 162/192 (84%), Gaps = 8/192 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEK--------VDADFSRISSEITHKGFLVTSVDQLVTWART 52
MGLT+ N +++ Q L+ DA F+ ++SE++ KGF+VTS D L+TWART
Sbjct: 1 MGLTSANTTLVAPQPKGILDPRTGKPVGSDDAFFNDLNSELSDKGFIVTSADALITWART 60
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLMWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61 GSLMWMTFGLACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRK 120
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGIL+
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILM 180
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192
>gi|144899466|emb|CAM76330.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Magnetospirillum
gryphiswaldense MSR-1]
Length = 186
Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats.
Identities = 126/186 (67%), Positives = 149/186 (80%), Gaps = 5/186 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEK---VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMW 57
MG+T N +++ + L + D+ ++ E+ KGF++ +VD+LV WARTGSL
Sbjct: 1 MGVT--NSGLVTPAHAAPLPQGAAQDSVLKLVTDELEDKGFVLANVDKLVNWARTGSLWP 58
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
MTFGLACCAVEM+ A RYD++RFG R SPRQSDVMIVAGTLTNKMA ALRRVYDQM
Sbjct: 59 MTFGLACCAVEMIHAGCSRYDMDRFGVVFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQM 118
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EPR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKI
Sbjct: 119 AEPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGILQLQKKI 178
Query: 178 RRVGNV 183
RR G++
Sbjct: 179 RRTGSI 184
>gi|315122725|ref|YP_004063214.1| NADH dehydrogenase subunit B [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313496127|gb|ADR52726.1| NADH dehydrogenase subunit B [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 185
Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats.
Identities = 158/184 (85%), Positives = 168/184 (91%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
MGLT ++KI+ SS SLEK DF +E+ +KGFLV +DQLVTWARTGSLMWMTF
Sbjct: 1 MGLTKFDRKIVVDHSSFSLEKAGMDFPSTDTELMNKGFLVAPIDQLVTWARTGSLMWMTF 60
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP
Sbjct: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGILLLQKKIRR+
Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGILLLQKKIRRI 180
Query: 181 GNVK 184
GN+K
Sbjct: 181 GNIK 184
>gi|222085576|ref|YP_002544106.1| NADH-ubiquinone oxidoreductase chain B protein [Agrobacterium
radiobacter K84]
gi|238065070|sp|B9JD43|NUOB_AGRRK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|221723024|gb|ACM26180.1| NADH-ubiquinone oxidoreductase chain B protein [Agrobacterium
radiobacter K84]
Length = 193
Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats.
Identities = 141/192 (73%), Positives = 160/192 (83%), Gaps = 8/192 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWART 52
MG+ N +++ Q ++ D F I++E+ KGFLVTS D+L+ WART
Sbjct: 1 MGVAQSNTTLVAPQPKGIIDPATGKPVGSNDPFFGEINNELADKGFLVTSTDELINWART 60
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61 GSLMWMTFGLACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRK 120
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP+DIY+PGCPPTAEAL+YG+LL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYIPGCPPTAEALLYGVLL 180
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192
>gi|227821618|ref|YP_002825588.1| NADH dehydrogenase subunit B [Sinorhizobium fredii NGR234]
gi|227340617|gb|ACP24835.1| NADH dehydrogenase I chain B [Sinorhizobium fredii NGR234]
Length = 192
Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats.
Identities = 141/182 (77%), Positives = 156/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 10 VAPQPKGIIDPATGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 69
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 70 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 130 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 189
Query: 183 VK 184
++
Sbjct: 190 IE 191
>gi|300023456|ref|YP_003756067.1| NADH-quinone oxidoreductase subunit beta [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525277|gb|ADJ23746.1| NADH-quinone oxidoreductase, B subunit [Hyphomicrobium
denitrificans ATCC 51888]
Length = 198
Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats.
Identities = 141/174 (81%), Positives = 158/174 (90%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
+SG ++ + D F+ IS+E+ KGFLVT+VD L+ WARTGSLMWMTFGLACCAVEMM
Sbjct: 24 VSGAATSIIRPDDQFFTGISNELADKGFLVTTVDDLINWARTGSLMWMTFGLACCAVEMM 83
Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 84 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 143
Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
NGGGYYHYSY+VVRGCDR+VPVD+YVPGCPPTAEAL+YGILLLQ+KIRR G ++
Sbjct: 144 NGGGYYHYSYAVVRGCDRVVPVDVYVPGCPPTAEALVYGILLLQRKIRRTGTIE 197
>gi|326538542|gb|ADZ86757.1| NADH-quinone oxidoreductase, B subunit [Brucella melitensis M5-90]
Length = 191
Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats.
Identities = 138/182 (75%), Positives = 156/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + I+ ++ + DA F+ ++ E++ KGF+VTS D L+TWARTGSLMWMTFGL
Sbjct: 9 VAPQPKGILDPRTGKPVGSDDAFFNDLNGELSDKGFIVTSADALITWARTGSLMWMTFGL 68
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 69 ACCAVEMMHISMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 128
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQKKIRR G
Sbjct: 129 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGT 188
Query: 183 VK 184
++
Sbjct: 189 IE 190
>gi|197097452|ref|NP_001126953.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial precursor [Pongo abelii]
gi|269969393|sp|P0CB83|NDUS7_PONAB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
7, mitochondrial; AltName: Full=Complex I-20kD;
Short=CI-20kD; AltName: Full=NADH-ubiquinone
oxidoreductase 20 kDa subunit; Flags: Precursor
gi|55733271|emb|CAH93318.1| hypothetical protein [Pongo abelii]
Length = 213
Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats.
Identities = 116/181 (64%), Positives = 138/181 (76%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
V+Q + + S + + + + ++V +D L+ WAR SL MTFGLA
Sbjct: 28 QGVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLINWARRSSLWPMTFGLA 87
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV
Sbjct: 88 CCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYV 147
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R +
Sbjct: 148 VSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRL 207
Query: 184 K 184
+
Sbjct: 208 Q 208
>gi|15965018|ref|NP_385371.1| NADH dehydrogenase subunit B [Sinorhizobium meliloti 1021]
gi|307301090|ref|ZP_07580859.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
BL225C]
gi|307317824|ref|ZP_07597262.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
AK83]
gi|7387950|sp|O68853|NUOB1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|5650735|emb|CAB51621.1| nuoB1 [Sinorhizobium meliloti]
gi|15074197|emb|CAC45844.1| NADH-ubiqionone oxidoreductase subunit K transmembrane protein
[Sinorhizobium meliloti 1021]
gi|306896586|gb|EFN27334.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
AK83]
gi|306904045|gb|EFN34631.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
BL225C]
Length = 192
Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats.
Identities = 140/182 (76%), Positives = 156/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + I+ + + DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 10 VAPQPKGILDPATGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 69
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 70 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 130 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 189
Query: 183 VK 184
++
Sbjct: 190 IE 191
>gi|217979050|ref|YP_002363197.1| NADH-quinone oxidoreductase, B subunit [Methylocella silvestris
BL2]
gi|238065173|sp|B8EIL8|NUOB_METSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|217504426|gb|ACK51835.1| NADH-quinone oxidoreductase, B subunit [Methylocella silvestris
BL2]
Length = 187
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 144/186 (77%), Positives = 160/186 (86%), Gaps = 2/186 (1%)
Query: 1 MGLTTVNQK--IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58
MGLT Q+ +I+ + L D F I+ ++ KGFLVTS D+L+ WARTGSLMWM
Sbjct: 1 MGLTPAPQEGLVINPATDRPLAANDPYFLSINDKLADKGFLVTSTDELINWARTGSLMWM 60
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMMQASMPRYD+ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 61 TFGLACCAVEMMQASMPRYDVERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMP 120
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQ+KIR
Sbjct: 121 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQRKIR 180
Query: 179 RVGNVK 184
R G ++
Sbjct: 181 RTGTIE 186
>gi|110633377|ref|YP_673585.1| NADH dehydrogenase subunit B [Mesorhizobium sp. BNC1]
gi|122966123|sp|Q11JK5|NUOB_MESSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|110284361|gb|ABG62420.1| NADH dehydrogenase subunit B [Chelativorans sp. BNC1]
Length = 190
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 142/189 (75%), Positives = 156/189 (82%), Gaps = 5/189 (2%)
Query: 1 MGLTTV-----NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSL 55
MGL ++ II + + D + I+ E++ KGFLVTS + L+TWARTGSL
Sbjct: 1 MGLNDTLVAPRSRGIIDPNTGNPVGANDPFYGAINEELSDKGFLVTSSEALITWARTGSL 60
Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
MWMTFGLACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYD
Sbjct: 61 MWMTFGLACCAVEMMHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYD 120
Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQK
Sbjct: 121 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQK 180
Query: 176 KIRRVGNVK 184
KIRR G ++
Sbjct: 181 KIRRTGTIE 189
>gi|13543603|gb|AAH05954.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
(NADH-coenzyme Q reductase) [Homo sapiens]
gi|84105526|gb|AAI11518.1| NDUFS7 protein [Homo sapiens]
gi|325464357|gb|ADZ15949.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
(NADH-coenzyme Q reductase) [synthetic construct]
Length = 213
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 117/180 (65%), Positives = 138/180 (76%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V+Q + + S + + + + ++V +D LV WAR SL MTFGLAC
Sbjct: 29 GVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 88
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+
Sbjct: 89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 148
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++
Sbjct: 149 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208
>gi|307942118|ref|ZP_07657469.1| NADH-quinone oxidoreductase subunit b 1 [Roseibium sp. TrichSKD4]
gi|307774404|gb|EFO33614.1| NADH-quinone oxidoreductase subunit b 1 [Roseibium sp. TrichSKD4]
Length = 193
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 141/192 (73%), Positives = 158/192 (82%), Gaps = 8/192 (4%)
Query: 1 MGLTTVNQK--------IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52
MGLT ++ II + + D F ++ ++ KGFLVTS D L+ WART
Sbjct: 1 MGLTQTSKPLIAEQPKGIIDPNTGKPVGADDPFFLEVNDQLADKGFLVTSTDNLIQWART 60
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61 GSLMWMTFGLACCAVEMMQMSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRK 120
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLM 180
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192
>gi|254456317|ref|ZP_05069746.1| NADH dehydrogenase i chain b [Candidatus Pelagibacter sp. HTCC7211]
gi|207083319|gb|EDZ60745.1| NADH dehydrogenase i chain b [Candidatus Pelagibacter sp. HTCC7211]
Length = 171
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 126/164 (76%), Positives = 146/164 (89%)
Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
+++V +F +++ + + GF+ TS+D L+ W+R+GSL WMTFGLACCAVEMMQ +MPRYD
Sbjct: 5 IDQVPEEFKQLAEDFSKNGFITTSLDNLINWSRSGSLHWMTFGLACCAVEMMQTAMPRYD 64
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
LERFG APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY
Sbjct: 65 LERFGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 124
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
SYSVVRGCDRIVPVD+YVPGCPP+AEAL+YGIL LQKKIR G+
Sbjct: 125 SYSVVRGCDRIVPVDVYVPGCPPSAEALLYGILQLQKKIRNKGS 168
>gi|254503578|ref|ZP_05115729.1| NADH-quinone oxidoreductase, B subunit subfamily [Labrenzia
alexandrii DFL-11]
gi|222439649|gb|EEE46328.1| NADH-quinone oxidoreductase, B subunit subfamily [Labrenzia
alexandrii DFL-11]
Length = 199
Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats.
Identities = 143/191 (74%), Positives = 157/191 (82%), Gaps = 7/191 (3%)
Query: 1 MGLTT-------VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTG 53
MGLTT + II + + D F ++ E+ KGFLVTS D L+ WARTG
Sbjct: 8 MGLTTAKPLIAEQPKGIIDPNTGKPVGADDPFFLEVNDELADKGFLVTSTDNLIQWARTG 67
Query: 54 SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
SLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 68 SLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKV 127
Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+L
Sbjct: 128 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLML 187
Query: 174 QKKIRRVGNVK 184
QKKIRR G ++
Sbjct: 188 QKKIRRTGTIE 198
>gi|71083583|ref|YP_266302.1| NADH dehydrogenase subunit B [Candidatus Pelagibacter ubique
HTCC1062]
gi|91761996|ref|ZP_01263961.1| NADH dehydrogenase beta subunit [Candidatus Pelagibacter ubique
HTCC1002]
gi|123646646|sp|Q4FM90|NUOB_PELUB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|71062696|gb|AAZ21699.1| NADH Dehydrogenase I Chain B [Candidatus Pelagibacter ubique
HTCC1062]
gi|91717798|gb|EAS84448.1| NADH dehydrogenase beta subunit [Candidatus Pelagibacter ubique
HTCC1002]
Length = 173
Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats.
Identities = 125/165 (75%), Positives = 145/165 (87%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+++ +F +++ + + GF+ TS+D L+ W+R GSL WMTFGLACCAVEMMQ +MPRYDL
Sbjct: 8 KEIPEEFKKLAEDFSKNGFITTSLDNLINWSRAGSLHWMTFGLACCAVEMMQTAMPRYDL 67
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
ERFG APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYS
Sbjct: 68 ERFGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYS 127
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSVVRGCD+IVPVDIYVPGCPP+AEAL+YGIL LQKKIR G+ +
Sbjct: 128 YSVVRGCDKIVPVDIYVPGCPPSAEALLYGILQLQKKIRNKGSFE 172
>gi|190891286|ref|YP_001977828.1| NADH-ubiquinone oxidoreductase, chain B [Rhizobium etli CIAT 652]
gi|238065013|sp|B3PVZ8|NUOB1_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|190696565|gb|ACE90650.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
CIAT 652]
Length = 194
Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats.
Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 9/193 (4%)
Query: 1 MGLTTVN---------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51
MG+T V+ + II + + DA F I++E+ KGFLVTS D+L+ WAR
Sbjct: 1 MGVTPVSNEPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 60
Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 61 TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120
Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 180
Query: 172 LLQKKIRRVGNVK 184
LLQKKIRR G ++
Sbjct: 181 LLQKKIRRTGTIE 193
>gi|86357237|ref|YP_469129.1| NADH dehydrogenase subunit B [Rhizobium etli CFN 42]
gi|218673424|ref|ZP_03523093.1| NADH dehydrogenase subunit B [Rhizobium etli GR56]
gi|123512314|sp|Q2K9T4|NUOB1_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|86281339|gb|ABC90402.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN
42]
Length = 194
Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats.
Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 9/193 (4%)
Query: 1 MGLTTVN---------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51
MG+T V+ + II + + DA F I++E+ KGFLVTS D+L+ WAR
Sbjct: 1 MGVTPVSNQPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 60
Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 61 TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120
Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 180
Query: 172 LLQKKIRRVGNVK 184
LLQKKIRR G ++
Sbjct: 181 LLQKKIRRTGTIE 193
>gi|304391399|ref|ZP_07373341.1| NADH-quinone oxidoreductase subunit b 1 [Ahrensia sp. R2A130]
gi|303295628|gb|EFL89986.1| NADH-quinone oxidoreductase subunit b 1 [Ahrensia sp. R2A130]
Length = 191
Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats.
Identities = 134/182 (73%), Positives = 154/182 (84%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + ++ + + + D F I++E+ KGF+VT+ D L+ W+RTGSLMWMTFGL
Sbjct: 9 IAPTPKGVLDPATGKPVGQNDPFFGEINNELADKGFIVTTTDDLINWSRTGSLMWMTFGL 68
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 69 ACCAVEMMQMSMPRYDSERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 128
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G
Sbjct: 129 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTGT 188
Query: 183 VK 184
++
Sbjct: 189 IE 190
>gi|209548863|ref|YP_002280780.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|238065201|sp|B5ZYL3|NUOB_RHILW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|209534619|gb|ACI54554.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 194
Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats.
Identities = 141/182 (77%), Positives = 157/182 (86%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 12 VAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 71
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72 ACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191
Query: 183 VK 184
++
Sbjct: 192 IE 193
>gi|163759542|ref|ZP_02166627.1| NADH dehydrogenase beta subunit [Hoeflea phototrophica DFL-43]
gi|162283139|gb|EDQ33425.1| NADH dehydrogenase beta subunit [Hoeflea phototrophica DFL-43]
Length = 191
Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats.
Identities = 138/182 (75%), Positives = 157/182 (86%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + + DA F +++E+ KGFLVTS D+L+ W+RTGSLMWMTFGL
Sbjct: 9 VAPAAKGIIDPNTGKPVGQDDAFFGEVNNELADKGFLVTSTDELINWSRTGSLMWMTFGL 68
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 69 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 128
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKK+RR G
Sbjct: 129 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKMRRTGT 188
Query: 183 VK 184
++
Sbjct: 189 IE 190
>gi|327188488|gb|EGE55702.1| NADH dehydrogenase subunit B [Rhizobium etli CNPAF512]
Length = 201
Score = 247 bits (631), Expect = 5e-64, Method: Composition-based stats.
Identities = 144/193 (74%), Positives = 162/193 (83%), Gaps = 9/193 (4%)
Query: 1 MGLTTVN---------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51
MG+T V+ + II + + DA F I++E+ KGFLVTS D+L+ WAR
Sbjct: 8 MGVTPVSNQPLVAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWAR 67
Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
TGSLMWMTFGLACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 68 TGSLMWMTFGLACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 127
Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+L
Sbjct: 128 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVL 187
Query: 172 LLQKKIRRVGNVK 184
LLQKKIRR G ++
Sbjct: 188 LLQKKIRRTGTIE 200
>gi|49474178|ref|YP_032220.1| NADH dehydrogenase subunit B [Bartonella quintana str. Toulouse]
gi|81647090|sp|Q6FZZ0|NUOB_BARQU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|49239682|emb|CAF26057.1| NADH dehydrogenase I, B subunit [Bartonella quintana str. Toulouse]
Length = 193
Score = 247 bits (630), Expect = 7e-64, Method: Composition-based stats.
Identities = 139/184 (75%), Positives = 158/184 (85%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M + ++ II + + D F I++E++ KGFLVTS D L+TWARTGSLMWM+F
Sbjct: 9 MVVAPKSKGIIDPNTGKLIGSDDRFFHDINAELSDKGFLVTSADALITWARTGSLMWMSF 68
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEP
Sbjct: 69 GLACCAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEP 128
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR
Sbjct: 129 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRT 188
Query: 181 GNVK 184
G+++
Sbjct: 189 GSIE 192
>gi|119589914|gb|EAW69508.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
(NADH-coenzyme Q reductase), isoform CRA_b [Homo
sapiens]
Length = 224
Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats.
Identities = 117/180 (65%), Positives = 138/180 (76%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V+Q + + S + + + + ++V +D LV WAR SL MTFGLAC
Sbjct: 40 GVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 99
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+
Sbjct: 100 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 159
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++
Sbjct: 160 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 219
>gi|170748477|ref|YP_001754737.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium
radiotolerans JCM 2831]
gi|238065171|sp|B1LUN6|NUOB_METRJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|170654999|gb|ACB24054.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium
radiotolerans JCM 2831]
Length = 195
Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats.
Identities = 137/182 (75%), Positives = 153/182 (84%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + D F IS E+ +GFL+T+ D+L+ WARTGSLMWMTFGL
Sbjct: 13 IAPQPKGIIDPNTGRPIGADDPTFLSISDELADRGFLLTTTDELINWARTGSLMWMTFGL 72
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 73 ACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 132
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 133 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 192
Query: 183 VK 184
++
Sbjct: 193 IE 194
>gi|154253664|ref|YP_001414488.1| NADH-quinone oxidoreductase subunit B [Parvibaculum lavamentivorans
DS-1]
gi|238065187|sp|A7HY48|NUOB_PARL1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|154157614|gb|ABS64831.1| NADH-quinone oxidoreductase, B subunit [Parvibaculum
lavamentivorans DS-1]
Length = 191
Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats.
Identities = 138/189 (73%), Positives = 157/189 (83%), Gaps = 6/189 (3%)
Query: 1 MGLTTVNQ------KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGS 54
MG+T ++ ++ +S + DA F + + ++ KGF++T+VD L+ W+RTGS
Sbjct: 1 MGVTNPDKVISNTPGVVDPATSVPAWQDDAFFRQATDQLADKGFVLTTVDDLINWSRTGS 60
Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
LMWMTFGLACCAVEMMQ SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VY
Sbjct: 61 LMWMTFGLACCAVEMMQTSMPRYDAERFGVAPRASPRQSDVMIVAGTLTNKMAPALRKVY 120
Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ
Sbjct: 121 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILALQ 180
Query: 175 KKIRRVGNV 183
KKIRR G +
Sbjct: 181 KKIRRTGTL 189
>gi|115502488|sp|Q0MQH9|NDUS7_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
7, mitochondrial; AltName: Full=Complex I-20kD;
Short=CI-20kD; AltName: Full=NADH-ubiquinone
oxidoreductase 20 kDa subunit; Flags: Precursor
gi|269969394|sp|P0CB84|NDUS7_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
7, mitochondrial; AltName: Full=Complex I-20kD;
Short=CI-20kD; AltName: Full=NADH-ubiquinone
oxidoreductase 20 kDa subunit; Flags: Precursor
gi|111661828|gb|ABH12164.1| mitochondrial complex I subunit NDUFS7 [Gorilla gorilla]
gi|111661830|gb|ABH12165.1| mitochondrial complex I subunit NDUFS7 [Pongo pygmaeus]
Length = 213
Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats.
Identities = 117/180 (65%), Positives = 138/180 (76%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V+Q + + S + + + + ++V +D LV WAR SL MTFGLAC
Sbjct: 29 GVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 88
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+
Sbjct: 89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 148
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++
Sbjct: 149 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208
>gi|187281616|ref|NP_077718.3| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial precursor [Homo sapiens]
gi|90110040|sp|O75251|NDUS7_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
7, mitochondrial; AltName: Full=Complex I-20kD;
Short=CI-20kD; AltName: Full=NADH-ubiquinone
oxidoreductase 20 kDa subunit; AltName: Full=PSST
subunit; Flags: Precursor
gi|33150724|gb|AAP97240.1|AF115969_1 NADH:ubiquinone oxidoreductase PSST subunit [Homo sapiens]
gi|62897035|dbj|BAD96458.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 variant [Homo
sapiens]
Length = 213
Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats.
Identities = 117/180 (65%), Positives = 138/180 (76%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V+Q + + S + + + + ++V +D LV WAR SL MTFGLAC
Sbjct: 29 GVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 88
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+
Sbjct: 89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 148
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++
Sbjct: 149 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208
>gi|159031992|ref|NP_001103713.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial precursor [Pan troglodytes]
gi|115502489|sp|Q0MQI0|NDUS7_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
7, mitochondrial; AltName: Full=Complex I-20kD;
Short=CI-20kD; AltName: Full=NADH-ubiquinone
oxidoreductase 20 kDa subunit; Flags: Precursor
gi|111661826|gb|ABH12163.1| mitochondrial complex I subunit NDUFS7 [Pan troglodytes]
Length = 213
Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats.
Identities = 117/180 (65%), Positives = 139/180 (77%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
+V+Q + + S + + + + ++V +D LV WAR SL MTFGLAC
Sbjct: 29 SVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 88
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+
Sbjct: 89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 148
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++
Sbjct: 149 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 208
>gi|34189943|gb|AAH01715.2| NDUFS7 protein [Homo sapiens]
Length = 208
Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats.
Identities = 117/180 (65%), Positives = 138/180 (76%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V+Q + + S + + + + ++V +D LV WAR SL MTFGLAC
Sbjct: 24 GVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 83
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+
Sbjct: 84 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 143
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++
Sbjct: 144 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 203
>gi|298291846|ref|YP_003693785.1| NADH-quinone oxidoreductase subunit beta [Starkeya novella DSM 506]
gi|296928357|gb|ADH89166.1| NADH-quinone oxidoreductase, B subunit [Starkeya novella DSM 506]
Length = 192
Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats.
Identities = 138/182 (75%), Positives = 156/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + D F +++E+ KGFLVT+ D+L+ WARTGSLMWMTFGL
Sbjct: 10 VAPAARGIIDPNTGKPVGTTDPFFVEVNAELADKGFLVTATDELINWARTGSLMWMTFGL 69
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 70 ACCAVEMMQTSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 130 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGVLLLQKKIRRTGT 189
Query: 183 VK 184
++
Sbjct: 190 IE 191
>gi|118590038|ref|ZP_01547442.1| NADH dehydrogenase subunit B [Stappia aggregata IAM 12614]
gi|118437535|gb|EAV44172.1| NADH dehydrogenase subunit B [Stappia aggregata IAM 12614]
Length = 192
Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats.
Identities = 145/191 (75%), Positives = 159/191 (83%), Gaps = 7/191 (3%)
Query: 1 MGLTTVN-------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTG 53
MGLTT Q II + + DA F +++E+ KGFLVTS D L+ WARTG
Sbjct: 1 MGLTTTEPLVAPQPQGIIDPNTGKPVGADDAFFLEVNNELADKGFLVTSTDNLIQWARTG 60
Query: 54 SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
SLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 61 SLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKV 120
Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+L
Sbjct: 121 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLML 180
Query: 174 QKKIRRVGNVK 184
QKKIRR G ++
Sbjct: 181 QKKIRRTGTIE 191
>gi|116251467|ref|YP_767305.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. viciae
3841]
gi|238065200|sp|Q1MIL4|NUOB_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|115256115|emb|CAK07196.1| putative NADH-quinone oxidoreductase subunit B [Rhizobium
leguminosarum bv. viciae 3841]
Length = 194
Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats.
Identities = 140/182 (76%), Positives = 156/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + D F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 12 VAQQPKGIIDPSTGKPIGSNDPFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 71
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72 ACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191
Query: 183 VK 184
++
Sbjct: 192 IE 193
>gi|218457950|ref|ZP_03498041.1| NADH dehydrogenase subunit B [Rhizobium etli Kim 5]
Length = 185
Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats.
Identities = 140/179 (78%), Positives = 156/179 (87%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ ++ II + + DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 7 VARQSKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 66
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 67 ACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 126
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VISMGSCANGGGYYHYSYSVVRGCDR+VP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 127 VISMGSCANGGGYYHYSYSVVRGCDRVVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTG 185
>gi|241204087|ref|YP_002975183.1| NADH dehydrogenase subunit B [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240857977|gb|ACS55644.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 194
Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats.
Identities = 140/182 (76%), Positives = 156/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + D F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 12 VAQQPKGIIDPSTGKPVGSNDPFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 71
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72 ACCAVEMMQLSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191
Query: 183 VK 184
++
Sbjct: 192 IE 193
>gi|13471406|ref|NP_102972.1| NADH dehydrogenase subunit B [Mesorhizobium loti MAFF303099]
gi|14022148|dbj|BAB48758.1| NADH-ubiquinone dehydrogenase chain B 1 [Mesorhizobium loti
MAFF303099]
Length = 200
Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats.
Identities = 135/182 (74%), Positives = 154/182 (84%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + + D F I++E+ KGFLVTS + L+TWAR+GSLM+MTFGL
Sbjct: 18 VAPKPKGIIDPNTGRPVGEDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGL 77
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEM+ SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 78 ACCAVEMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRY 137
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQKKIRR G
Sbjct: 138 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGT 197
Query: 183 VK 184
++
Sbjct: 198 IE 199
>gi|121602032|ref|YP_989071.1| NADH dehydrogenase subunit B [Bartonella bacilliformis KC583]
gi|238055234|sp|A1USW8|NUOB_BARBK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|120614209|gb|ABM44810.1| NADH dehydrogenase (quinone), B subunit [Bartonella bacilliformis
KC583]
Length = 193
Score = 246 bits (627), Expect = 2e-63, Method: Composition-based stats.
Identities = 143/192 (74%), Positives = 162/192 (84%), Gaps = 8/192 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWART 52
MGL N I++ Q+ ++ D F +++E++ KGFLVTSVD L+TWART
Sbjct: 1 MGLVFNNSTIVAPQAKGIIDPNTSKLIGANDQFFQDMNAELSDKGFLVTSVDSLITWART 60
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLMWM+FGLACCAVEMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+
Sbjct: 61 GSLMWMSFGLACCAVEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRK 120
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILL 180
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G+++
Sbjct: 181 LQKKIRRTGSIE 192
>gi|319405697|emb|CBI79320.1| NADH dehydrogenase I, B subunit [Bartonella sp. AR 15-3]
Length = 193
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 138/182 (75%), Positives = 159/182 (87%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ ++ II ++ ++ + FS I++E+ KGFLVTS D L+TWARTGSLMWM+FGL
Sbjct: 11 VAPKSKGIIDPNTAELVDSNNKFFSDINTELGDKGFLVTSADALITWARTGSLMWMSFGL 70
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71 ACCAVEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGS 190
Query: 183 VK 184
++
Sbjct: 191 IE 192
>gi|15888598|ref|NP_354279.1| NADH dehydrogenase subunit B [Agrobacterium tumefaciens str. C58]
gi|15156318|gb|AAK87064.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium tumefaciens
str. C58]
Length = 201
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 140/193 (72%), Positives = 161/193 (83%), Gaps = 9/193 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWART 52
MG++ N +++ Q ++ DA F+ I+ E+ KGFLVTS D+L+TWART
Sbjct: 8 MGMSQNNSTLVAPQPKGIIDPATGKPVGSNDAYFTEINDELADKGFLVTSTDELITWART 67
Query: 53 GSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
GSLMWM FGLACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 68 GSLMWMQFGLACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIVAGTLTNKMAPALR 127
Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+L
Sbjct: 128 KVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVL 187
Query: 172 LLQKKIRRVGNVK 184
LLQKKIRR G ++
Sbjct: 188 LLQKKIRRTGTIE 200
>gi|49475657|ref|YP_033698.1| NADH dehydrogenase subunit B [Bartonella henselae str. Houston-1]
gi|81647866|sp|Q6G389|NUOB_BARHE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|49238464|emb|CAF27692.1| NADH dehydrogenase I, B subunit [Bartonella henselae str.
Houston-1]
Length = 193
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 141/192 (73%), Positives = 161/192 (83%), Gaps = 8/192 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEK--------VDADFSRISSEITHKGFLVTSVDQLVTWART 52
MGL + N I + +S ++ D F +++E++ KGFLVTS D L+TWART
Sbjct: 1 MGLISSNSTITAPKSKGIIDPNTGELIGSDDRFFCEVNAELSEKGFLVTSADALITWART 60
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLMWM+FGLACCA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+
Sbjct: 61 GSLMWMSFGLACCAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRK 120
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILL 180
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G+++
Sbjct: 181 LQKKIRRTGSIE 192
>gi|154248551|ref|YP_001419509.1| NADH-quinone oxidoreductase, B subunit [Xanthobacter autotrophicus
Py2]
gi|238065245|sp|A7IPA6|NUOB_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|154162636|gb|ABS69852.1| NADH-quinone oxidoreductase, B subunit [Xanthobacter autotrophicus
Py2]
Length = 194
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 138/182 (75%), Positives = 157/182 (86%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ Q I+ + + D F I+SE+ KGF++T+ D L+TWARTGSLMWMTFGL
Sbjct: 12 IAQAPQGIVDPSTGRPVGADDPFFKEINSELADKGFILTTADDLITWARTGSLMWMTFGL 71
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYH+SY+VVRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR+G
Sbjct: 132 VISMGSCANGGGYYHFSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRIGT 191
Query: 183 VK 184
++
Sbjct: 192 IE 193
>gi|150396112|ref|YP_001326579.1| NADH dehydrogenase subunit B [Sinorhizobium medicae WSM419]
gi|238065217|sp|A6U7W4|NUOB_SINMW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|150027627|gb|ABR59744.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium medicae
WSM419]
Length = 192
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 141/182 (77%), Positives = 157/182 (86%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + I+ + + DA F I++E+ KGFLVTS D+L+TWARTGSLMWMTFGL
Sbjct: 10 VAPQPKGILDPATGKPIGSNDAFFGEINNELADKGFLVTSTDELITWARTGSLMWMTFGL 69
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 70 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 130 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 189
Query: 183 VK 184
++
Sbjct: 190 IE 191
>gi|119589913|gb|EAW69507.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
(NADH-coenzyme Q reductase), isoform CRA_a [Homo
sapiens]
Length = 298
Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats.
Identities = 117/180 (65%), Positives = 138/180 (76%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V+Q + + S + + + + ++V +D LV WAR SL MTFGLAC
Sbjct: 114 GVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 173
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+
Sbjct: 174 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 233
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL LQ+KI+R ++
Sbjct: 234 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQ 293
>gi|325292633|ref|YP_004278497.1| NADH dehydrogenase I chain B [Agrobacterium sp. H13-3]
gi|238065076|sp|A9CJB2|NUOB_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|325060486|gb|ADY64177.1| NADH dehydrogenase I chain B [Agrobacterium sp. H13-3]
Length = 194
Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats.
Identities = 140/193 (72%), Positives = 161/193 (83%), Gaps = 9/193 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWART 52
MG++ N +++ Q ++ DA F+ I+ E+ KGFLVTS D+L+TWART
Sbjct: 1 MGMSQNNSTLVAPQPKGIIDPATGKPVGSNDAYFTEINDELADKGFLVTSTDELITWART 60
Query: 53 GSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
GSLMWM FGLACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 61 GSLMWMQFGLACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIVAGTLTNKMAPALR 120
Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+L
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVL 180
Query: 172 LLQKKIRRVGNVK 184
LLQKKIRR G ++
Sbjct: 181 LLQKKIRRTGTIE 193
>gi|319782982|ref|YP_004142458.1| NADH-quinone oxidoreductase, subunit beta [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|218528069|sp|Q98KQ6|NUOB_RHILO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|317168870|gb|ADV12408.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 193
Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats.
Identities = 135/182 (74%), Positives = 154/182 (84%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + + D F I++E+ KGFLVTS + L+TWAR+GSLM+MTFGL
Sbjct: 11 VAPKPKGIIDPNTGRPVGEDDPFFLEINNELADKGFLVTSTEALITWARSGSLMFMTFGL 70
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEM+ SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71 ACCAVEMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRY 130
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGILLLQKKIRR G
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGILLLQKKIRRTGT 190
Query: 183 VK 184
++
Sbjct: 191 IE 192
>gi|157827450|ref|YP_001496514.1| NADH dehydrogenase subunit B [Rickettsia bellii OSU 85-389]
gi|218528017|sp|A8GX77|NUOB_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|157802754|gb|ABV79477.1| NADH dehydrogenase subunit B [Rickettsia bellii OSU 85-389]
Length = 174
Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats.
Identities = 113/160 (70%), Positives = 138/160 (86%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ +++E++++GFL+T VD ++ WAR+ SL MTFGLACCAVEMMQA+ RYD++RFG
Sbjct: 8 EDELLNNELSNRGFLLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGM 67
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVR
Sbjct: 68 LFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVR 127
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K
Sbjct: 128 GCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167
>gi|323138146|ref|ZP_08073219.1| NADH-quinone oxidoreductase, B subunit [Methylocystis sp. ATCC
49242]
gi|322396608|gb|EFX99136.1| NADH-quinone oxidoreductase, B subunit [Methylocystis sp. ATCC
49242]
Length = 194
Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats.
Identities = 131/182 (71%), Positives = 155/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + +I ++ + D F +I+ E+ KGF VT+ D ++ WARTGSLMWMTFGL
Sbjct: 12 VAPQPKGLIDPRTGKPVGSDDPFFLQINEELADKGFFVTATDDVINWARTGSLMWMTFGL 71
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEM+QA+MPRYDLERFGFAPRASPRQSD +I+AGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72 ACCAVEMIQAAMPRYDLERFGFAPRASPRQSDCIIIAGTLTNKMAPALRKVYDQMPEPRY 131
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRI+PVD+YVPGCPP+AEAL+YG+LLLQKKIRR G
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIIPVDVYVPGCPPSAEALVYGMLLLQKKIRRTGT 191
Query: 183 VK 184
++
Sbjct: 192 IE 193
>gi|260462231|ref|ZP_05810475.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium opportunistum
WSM2075]
gi|259032091|gb|EEW33358.1| NADH-quinone oxidoreductase, B subunit [Mesorhizobium opportunistum
WSM2075]
Length = 193
Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats.
Identities = 137/192 (71%), Positives = 157/192 (81%), Gaps = 8/192 (4%)
Query: 1 MGLTTVN--------QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWART 52
MGL + + II + + + D F I++E+ KGFLVTS + L+TWAR+
Sbjct: 1 MGLNDSSGTLVAPKPKGIIDPNTGKPVGQDDPFFLEINNELADKGFLVTSTEALITWARS 60
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLM+MTFGLACCAVEM+ SMPRYD ERFG APRASPRQSD+MIVAGTLTNKMA ALR+
Sbjct: 61 GSLMFMTFGLACCAVEMIHTSMPRYDSERFGVAPRASPRQSDIMIVAGTLTNKMAPALRK 120
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGILL 180
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192
>gi|254469713|ref|ZP_05083118.1| NADH-ubiquinone oxidoreductase chain b protein [Pseudovibrio sp.
JE062]
gi|211961548|gb|EEA96743.1| NADH-ubiquinone oxidoreductase chain b protein [Pseudovibrio sp.
JE062]
Length = 194
Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats.
Identities = 137/182 (75%), Positives = 156/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
++ + II + + + D F +++E++ KGFLVTS + L+ WARTGSLMWMTFGL
Sbjct: 12 VSQAPKGIIDPNTGRPVGENDPFFMNVNNELSDKGFLVTSSESLIQWARTGSLMWMTFGL 71
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72 ACCAVEMMQMSMPRYDAERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191
Query: 183 VK 184
++
Sbjct: 192 IE 193
>gi|297275661|ref|XP_002808210.1| PREDICTED: LOW QUALITY PROTEIN: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 7, mitochondrial-like [Macaca
mulatta]
Length = 362
Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats.
Identities = 118/180 (65%), Positives = 139/180 (77%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V+Q + + S + + + + + ++V +D LV WAR SL MTFGLAC
Sbjct: 178 GVHQSVATDGPSSAQPALPKAGAMVPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 237
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVI
Sbjct: 238 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVI 297
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YG+L LQ+KI+R V+
Sbjct: 298 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGVLQLQRKIKRERKVQ 357
>gi|296536155|ref|ZP_06898283.1| NADH dehydrogenase (ubiquinone) subunit B [Roseomonas cervicalis
ATCC 49957]
gi|296263526|gb|EFH10023.1| NADH dehydrogenase (ubiquinone) subunit B [Roseomonas cervicalis
ATCC 49957]
Length = 184
Score = 244 bits (622), Expect = 5e-63, Method: Composition-based stats.
Identities = 127/181 (70%), Positives = 147/181 (81%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
++ Q + Q+ + DA +S EI KGF+V ++D++V WARTGSL MTFGL
Sbjct: 1 MSANEQLAWNSQALPPGAEQDAVIKGVSGEIEDKGFIVANLDKVVNWARTGSLWPMTFGL 60
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAV M+ A MPRYDL+RFG PR SPRQSDVMIVAGTLTNKMA ALR+VYDQM EPR+
Sbjct: 61 ACCAVPMIHAYMPRYDLDRFGVIPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEPRW 120
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKIRR G+
Sbjct: 121 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIRRTGS 180
Query: 183 V 183
+
Sbjct: 181 I 181
>gi|319407266|emb|CBI80905.1| NADH dehydrogenase I, B subunit [Bartonella sp. 1-1C]
Length = 193
Score = 244 bits (622), Expect = 5e-63, Method: Composition-based stats.
Identities = 138/182 (75%), Positives = 157/182 (86%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + D F+ I++E+ KGFLVTSVD L+TWARTGSLMWM+FGL
Sbjct: 11 VAPKAKGIIDPNTGKLVGSNDKFFNDINAELGDKGFLVTSVDSLITWARTGSLMWMSFGL 70
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEM+Q SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71 ACCAVEMIQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGS 190
Query: 183 VK 184
++
Sbjct: 191 IE 192
>gi|319898883|ref|YP_004158976.1| NADH dehydrogenase I, B subunit [Bartonella clarridgeiae 73]
gi|319402847|emb|CBI76398.1| NADH dehydrogenase I, B subunit [Bartonella clarridgeiae 73]
Length = 193
Score = 244 bits (622), Expect = 5e-63, Method: Composition-based stats.
Identities = 141/182 (77%), Positives = 157/182 (86%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+T + II + + D FS I++E+ KGFLVTS D L+TWARTGSLMWM+FGL
Sbjct: 11 VTPKPKGIIDPNTGELVGSNDKFFSDINTELGDKGFLVTSADALITWARTGSLMWMSFGL 70
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71 ACCAVEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGS 190
Query: 183 VK 184
++
Sbjct: 191 IE 192
>gi|158423292|ref|YP_001524584.1| NADH dehydrogenase subunit B [Azorhizobium caulinodans ORS 571]
gi|218527974|sp|A8I3Y7|NUOB_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|158330181|dbj|BAF87666.1| NADH ubiqionone oxidoreductase chain B protein [Azorhizobium
caulinodans ORS 571]
Length = 192
Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats.
Identities = 138/182 (75%), Positives = 158/182 (86%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
++ + II + + D + I++E+ KGFLVT+VD L+TWARTGSLMWMTFGL
Sbjct: 10 VSEAPKGIIDPSTGRPILSDDPFYKEINAELADKGFLVTTVDDLITWARTGSLMWMTFGL 69
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 70 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 129
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQ+KIRR G
Sbjct: 130 VISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQRKIRRTGT 189
Query: 183 VK 184
++
Sbjct: 190 IE 191
>gi|92117743|ref|YP_577472.1| NADH dehydrogenase subunit B [Nitrobacter hamburgensis X14]
gi|123387068|sp|Q1QL85|NUOB_NITHX RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|91800637|gb|ABE63012.1| NADH dehydrogenase subunit B [Nitrobacter hamburgensis X14]
Length = 202
Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats.
Identities = 137/182 (75%), Positives = 155/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+T I+ ++ + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 20 VTPAAASILDPRTGRPVGAGDPYFLEVNHELSDKGFFVAATDDLITWARTGSLMWMTFGL 79
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 80 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 139
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVP+D+YVPGCPPTAEAL+YGILLLQKKIRR G
Sbjct: 140 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDVYVPGCPPTAEALLYGILLLQKKIRRTGT 199
Query: 183 VK 184
++
Sbjct: 200 IE 201
>gi|319404258|emb|CBI77851.1| NADH dehydrogenase I, B subunit [Bartonella rochalimae ATCC
BAA-1498]
Length = 193
Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats.
Identities = 139/182 (76%), Positives = 157/182 (86%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + D FS I++E+ KGFLVTSVD L+TWARTGSLMWM+FGL
Sbjct: 11 VAPKAKGIIDPNTGKLVGSNDKFFSDINAELGDKGFLVTSVDALITWARTGSLMWMSFGL 70
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEM+Q SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71 ACCAVEMIQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRY 130
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGILLLQKKIRR G+
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILLLQKKIRRTGS 190
Query: 183 VK 184
++
Sbjct: 191 IE 192
>gi|67458958|ref|YP_246582.1| NADH dehydrogenase subunit B [Rickettsia felis URRWXCal2]
gi|75536604|sp|Q4UM06|NUOB_RICFE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|67004491|gb|AAY61417.1| NADH dehydrogenase I chain B [Rickettsia felis URRWXCal2]
Length = 174
Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats.
Identities = 113/160 (70%), Positives = 137/160 (85%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ +++E++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG
Sbjct: 8 EDELLNNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGM 67
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVR
Sbjct: 68 LFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVR 127
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K
Sbjct: 128 GCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167
>gi|240850584|ref|YP_002971984.1| NADH dehydrogenase I subunit B [Bartonella grahamii as4aup]
gi|240267707|gb|ACS51295.1| NADH dehydrogenase I subunit B [Bartonella grahamii as4aup]
Length = 193
Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats.
Identities = 139/192 (72%), Positives = 159/192 (82%), Gaps = 8/192 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEK--------VDADFSRISSEITHKGFLVTSVDQLVTWART 52
M L + N I + + ++ D F +++E++ KGFLVTS D L+TWART
Sbjct: 1 MELRSNNSTIAAPKPKGIIDPNTGELIGSDDKFFRDLNAELSDKGFLVTSADALITWART 60
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLMWM+FGLACCA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+
Sbjct: 61 GSLMWMSFGLACCAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRK 120
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILL 180
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G+++
Sbjct: 181 LQKKIRRTGSIE 192
>gi|15892407|ref|NP_360121.1| NADH dehydrogenase subunit B [Rickettsia conorii str. Malish 7]
gi|34580591|ref|ZP_00142071.1| NADH dehydrogenase I chain B [Rickettsia sibirica 246]
gi|157828358|ref|YP_001494600.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933066|ref|YP_001649855.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. Iowa]
gi|238651035|ref|YP_002916892.1| NADH dehydrogenase subunit B [Rickettsia peacockii str. Rustic]
gi|20139043|sp|Q92ID6|NUOB_RICCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528020|sp|B0BX73|NUOB_RICRO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528021|sp|A8GRR7|NUOB_RICRS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|259514688|sp|C4K2P3|NUOB_RICPU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|15619558|gb|AAL03022.1| NADH dehydrogenase I chain B [Rickettsia conorii str. Malish 7]
gi|28261976|gb|EAA25480.1| NADH dehydrogenase I chain B [Rickettsia sibirica 246]
gi|157800839|gb|ABV76092.1| NADH dehydrogenase subunit B [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908153|gb|ABY72449.1| NADH-quinone oxidoreductase chain B [Rickettsia rickettsii str.
Iowa]
gi|238625133|gb|ACR47839.1| NADH dehydrogenase subunit B [Rickettsia peacockii str. Rustic]
Length = 174
Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats.
Identities = 114/160 (71%), Positives = 137/160 (85%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ +S+E++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG
Sbjct: 8 EDELLSNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGM 67
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVR
Sbjct: 68 LFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVR 127
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K
Sbjct: 128 GCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167
>gi|239947491|ref|ZP_04699244.1| NADH-quinone oxidoreductase subunit B [Rickettsia endosymbiont of
Ixodes scapularis]
gi|239921767|gb|EER21791.1| NADH-quinone oxidoreductase subunit B [Rickettsia endosymbiont of
Ixodes scapularis]
Length = 187
Score = 243 bits (621), Expect = 8e-63, Method: Composition-based stats.
Identities = 114/160 (71%), Positives = 136/160 (85%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ ++ E++++GFL+T VD ++ WART SL MTFGLACCAVEMMQA+ RYD++RFG
Sbjct: 21 EDELLNHELSNRGFLLTKVDDVIGWARTNSLWPMTFGLACCAVEMMQAAASRYDMDRFGM 80
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVR
Sbjct: 81 LFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVR 140
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDRIVPVDIYVPGCPPTAE LIYG++ LQKKI+R K
Sbjct: 141 GCDRIVPVDIYVPGCPPTAETLIYGLMQLQKKIKRTTGFK 180
>gi|91205212|ref|YP_537567.1| NADH dehydrogenase subunit B [Rickettsia bellii RML369-C]
gi|122425872|sp|Q1RJI6|NUOB_RICBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|91068756|gb|ABE04478.1| NADH dehydrogenase I chain B [Rickettsia bellii RML369-C]
Length = 174
Score = 243 bits (620), Expect = 8e-63, Method: Composition-based stats.
Identities = 112/160 (70%), Positives = 137/160 (85%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ +++E++++G L+T VD ++ WAR+ SL MTFGLACCAVEMMQA+ RYD++RFG
Sbjct: 8 EDELLNNELSNRGVLLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGM 67
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVR
Sbjct: 68 LFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVR 127
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K
Sbjct: 128 GCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167
>gi|162148810|ref|YP_001603271.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl
5]
gi|209545442|ref|YP_002277671.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl
5]
gi|221272394|sp|A9HRU3|NUOB2_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|161787387|emb|CAP56982.1| NADH-quinone oxidoreductase chain B [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533119|gb|ACI53056.1| NADH-quinone oxidoreductase, B subunit [Gluconacetobacter
diazotrophicus PAl 5]
Length = 191
Score = 243 bits (620), Expect = 8e-63, Method: Composition-based stats.
Identities = 128/167 (76%), Positives = 139/167 (83%)
Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
+ DA I+ EIT KGF+V S+D+LV W RTGSL M+FGLACCAVEM+ A MPR
Sbjct: 22 PPGPEQDAVIKGITGEITEKGFVVASLDKLVNWGRTGSLWPMSFGLACCAVEMIHAYMPR 81
Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
YDL+R G PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYY
Sbjct: 82 YDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYY 141
Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
HYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGI LQKKIRR G +
Sbjct: 142 HYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIFQLQKKIRRTGTI 188
>gi|163868372|ref|YP_001609581.1| NADH dehydrogenase subunit B [Bartonella tribocorum CIP 105476]
gi|238055237|sp|A9IUQ3|NUOB_BART1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|161018028|emb|CAK01586.1| NADH dehydrogenase I, B subunit [Bartonella tribocorum CIP 105476]
Length = 193
Score = 243 bits (620), Expect = 8e-63, Method: Composition-based stats.
Identities = 140/192 (72%), Positives = 159/192 (82%), Gaps = 8/192 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEK--------VDADFSRISSEITHKGFLVTSVDQLVTWART 52
M L + N I + + ++ D F I++E++ KGFLVTS D L+TWART
Sbjct: 1 MELRSNNSTITAPKPKGIIDPNTGELIGSDDRFFRDINAELSDKGFLVTSADALITWART 60
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLMWM+FGLACCA+EMMQ SMP YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+
Sbjct: 61 GSLMWMSFGLACCAIEMMQCSMPHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRK 120
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILL
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILL 180
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G+++
Sbjct: 181 LQKKIRRTGSIE 192
>gi|254294103|ref|YP_003060126.1| NADH-quinone oxidoreductase subunit beta [Hirschia baltica ATCC
49814]
gi|254042634|gb|ACT59429.1| NADH-quinone oxidoreductase, B subunit [Hirschia baltica ATCC
49814]
Length = 188
Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats.
Identities = 128/183 (69%), Positives = 150/183 (81%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M TVN + +S + D F+ +S E+ KGF+V +D ++WARTGSLM+M+F
Sbjct: 4 MSTPTVNSAQSASDASAKIRGDDPFFAGVSDELADKGFVVAKLDDAISWARTGSLMFMSF 63
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMM A+ PRYD+ERFG APR +PRQSD+MIVAGTLTNKMA A+R+VYDQM EP
Sbjct: 64 GLACCAVEMMHAANPRYDMERFGMAPRGTPRQSDLMIVAGTLTNKMAPAMRKVYDQMAEP 123
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+L LQKKIRR
Sbjct: 124 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALMYGLLQLQKKIRRE 183
Query: 181 GNV 183
G +
Sbjct: 184 GTI 186
>gi|328543686|ref|YP_004303795.1| NADH-quinone oxidoreductase subunit B [polymorphum gilvum
SL003B-26A1]
gi|326413430|gb|ADZ70493.1| NADH-quinone oxidoreductase subunit B [Polymorphum gilvum
SL003B-26A1]
Length = 193
Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats.
Identities = 140/192 (72%), Positives = 157/192 (81%), Gaps = 8/192 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEKV--------DADFSRISSEITHKGFLVTSVDQLVTWART 52
MGLTT +++ ++ D F ++ E+ KGFLVT+ D L+ WART
Sbjct: 1 MGLTTTKGPLVAPAPRGIIDPNTGKPVGANDPFFMGMNDELADKGFLVTTTDNLIQWART 60
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
GSLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 61 GSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRK 120
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L+
Sbjct: 121 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLM 180
Query: 173 LQKKIRRVGNVK 184
LQKKIRR G ++
Sbjct: 181 LQKKIRRTGTIE 192
>gi|229586623|ref|YP_002845124.1| NADH dehydrogenase subunit B [Rickettsia africae ESF-5]
gi|259514686|sp|C3PN71|NUOB_RICAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|228021673|gb|ACP53381.1| NADH dehydrogenase I chain B [Rickettsia africae ESF-5]
Length = 174
Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats.
Identities = 114/160 (71%), Positives = 137/160 (85%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ +S+E++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG
Sbjct: 8 EDELLSNELSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGM 67
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVR
Sbjct: 68 LFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVR 127
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K
Sbjct: 128 GCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167
>gi|262277300|ref|ZP_06055093.1| NADH-quinone oxidoreductase subunit b (nadhdehydrogenase i subunit
b) (ndh-1 subunit b) [alpha proteobacterium HIMB114]
gi|262224403|gb|EEY74862.1| NADH-quinone oxidoreductase subunit b (nadhdehydrogenase i subunit
b) (ndh-1 subunit b) [alpha proteobacterium HIMB114]
Length = 173
Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats.
Identities = 132/166 (79%), Positives = 148/166 (89%)
Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
L+++ +F ++ E + KGF+ + D L+ WARTGSL WMTFGLACCAVEMMQASMPRYD
Sbjct: 7 LDQIPQEFREVAEEFSEKGFVTIASDTLINWARTGSLHWMTFGLACCAVEMMQASMPRYD 66
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
LERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHY
Sbjct: 67 LERFGAAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHY 126
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SYSVVRGCDRIVPVDIYVPGCPP+AEAL+Y IL LQKKIRR G+++
Sbjct: 127 SYSVVRGCDRIVPVDIYVPGCPPSAEALLYAILQLQKKIRREGSLQ 172
>gi|114327965|ref|YP_745122.1| NADH dehydrogenase subunit B [Granulibacter bethesdensis CGDNIH1]
gi|122327073|sp|Q0BSK3|NUOB_GRABC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|114316139|gb|ABI62199.1| NADH-quinone oxidoreductase chain B [Granulibacter bethesdensis
CGDNIH1]
Length = 194
Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats.
Identities = 128/167 (76%), Positives = 142/167 (85%)
Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
+A I+ E+ KGF+V ++D+LV WARTGSL MTFGLACCAVEM+ A MPR
Sbjct: 25 PPGPGQEAVLRGITGEMADKGFVVANLDKLVNWARTGSLWPMTFGLACCAVEMIHAYMPR 84
Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
YDL+RFG PRASPRQSDVMIVAGTLTNKMA ALRRVYDQMPEPR+VISMGSCANGGGYY
Sbjct: 85 YDLDRFGVIPRASPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYY 144
Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
HYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G +
Sbjct: 145 HYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGIMQLQKKIRRTGTI 191
>gi|299135032|ref|ZP_07028223.1| NADH-quinone oxidoreductase, B subunit [Afipia sp. 1NLS2]
gi|298590009|gb|EFI50213.1| NADH-quinone oxidoreductase, B subunit [Afipia sp. 1NLS2]
Length = 197
Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats.
Identities = 137/182 (75%), Positives = 155/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
++ ++ ++ + D F I+ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 15 ISQPATGVLDPRTGQPVGADDRYFLEINHELSDKGFFVAAADDLITWARTGSLMWMTFGL 74
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 75 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 134
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 135 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 194
Query: 183 VK 184
++
Sbjct: 195 IE 196
>gi|330813983|ref|YP_004358222.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Pelagibacter sp.
IMCC9063]
gi|327487078|gb|AEA81483.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Pelagibacter sp.
IMCC9063]
Length = 175
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 132/170 (77%), Positives = 148/170 (87%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+ L+ + +F ++ E T KGF+ D+L+ WARTGSL WMTFGLACCAVEMMQ SM
Sbjct: 5 PAEKLKDIPKEFREVAEEFTEKGFVTIGSDRLINWARTGSLHWMTFGLACCAVEMMQTSM 64
Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
PRYDLERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGG
Sbjct: 65 PRYDLERFGAAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGG 124
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YYHYSYSVVRGCD+IVPVDIYVPGCPP+AEAL+YGIL LQKKIRR G+++
Sbjct: 125 YYHYSYSVVRGCDKIVPVDIYVPGCPPSAEALLYGILQLQKKIRREGSLQ 174
>gi|258542721|ref|YP_003188154.1| NADH dehydrogenase subunit B [Acetobacter pasteurianus IFO 3283-01]
gi|256633799|dbj|BAH99774.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
3283-01]
gi|256636858|dbj|BAI02827.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
3283-03]
gi|256639911|dbj|BAI05873.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
3283-07]
gi|256642967|dbj|BAI08922.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
3283-22]
gi|256646022|dbj|BAI11970.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
3283-26]
gi|256649075|dbj|BAI15016.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
3283-32]
gi|256652062|dbj|BAI17996.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655119|dbj|BAI21046.1| NADH-quinone oxidoreductase chain B [Acetobacter pasteurianus IFO
3283-12]
Length = 186
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 123/183 (67%), Positives = 144/183 (78%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M + + + ++ + DA I+ + KGF+V ++D+LV W RTGSL M+F
Sbjct: 1 MTTNQQDAVLWNREALPPGPEQDAVVRGITGVLAEKGFVVANLDKLVNWGRTGSLWPMSF 60
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEM+ A MPRYDL+R G PR SPRQSDVMIVAGTLTNKMA LRR+Y+QM EP
Sbjct: 61 GLACCAVEMIHAYMPRYDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPVLRRLYEQMAEP 120
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGI+LLQKKIRR
Sbjct: 121 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIMLLQKKIRRT 180
Query: 181 GNV 183
G +
Sbjct: 181 GTI 183
>gi|157964436|ref|YP_001499260.1| NADH dehydrogenase subunit B [Rickettsia massiliae MTU5]
gi|218528019|sp|A8F1C7|NUOB_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|157844212|gb|ABV84713.1| NADH dehydrogenase I chain B [Rickettsia massiliae MTU5]
Length = 174
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 114/160 (71%), Positives = 137/160 (85%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ +S+E++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG
Sbjct: 8 EDELLSNELSNRGFLLTKVDNVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGM 67
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVR
Sbjct: 68 LFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVR 127
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K
Sbjct: 128 GCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167
>gi|77463071|ref|YP_352575.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides 2.4.1]
gi|221638927|ref|YP_002525189.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides KD131]
gi|332557944|ref|ZP_08412266.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N]
gi|123592237|sp|Q3J3G0|NUOB1_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|238065016|sp|B9KQW1|NUOB1_RHOSK RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|77387489|gb|ABA78674.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B [Rhodobacter
sphaeroides 2.4.1]
gi|221159708|gb|ACM00688.1| NADH dehydrogenase I, B subunit [Rhodobacter sphaeroides KD131]
gi|332275656|gb|EGJ20971.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N]
Length = 174
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 131/161 (81%), Positives = 143/161 (88%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D D ++ E+ KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM SMPRYD+ERF
Sbjct: 12 DYDTQSLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 71
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 72 GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 172
>gi|126323645|ref|XP_001373250.1| PREDICTED: hypothetical protein [Monodelphis domestica]
Length = 304
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 115/149 (77%), Positives = 129/149 (86%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
+++T +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDV
Sbjct: 151 GEYVITKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDV 210
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY
Sbjct: 211 MIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 270
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VPGCPPTAEAL+YGIL LQKKI+R ++
Sbjct: 271 VPGCPPTAEALLYGILQLQKKIKREKRLR 299
>gi|47217431|emb|CAG00791.1| unnamed protein product [Tetraodon nigroviridis]
Length = 219
Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats.
Identities = 113/158 (71%), Positives = 131/158 (82%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
S + +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG
Sbjct: 57 KPASVASSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVF 116
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+DVMIVAGTLTNKMA ALR+VY+QMPEPRYVISMGSCANGGGYYHYSY+VVRGC
Sbjct: 117 RASPRQADVMIVAGTLTNKMAPALRKVYEQMPEPRYVISMGSCANGGGYYHYSYAVVRGC 176
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
DRIVPVDIYVPGCPPTAEAL+YG+L LQ+KI+R ++
Sbjct: 177 DRIVPVDIYVPGCPPTAEALLYGVLQLQRKIKREKKLR 214
>gi|75676078|ref|YP_318499.1| NADH dehydrogenase subunit B [Nitrobacter winogradskyi Nb-255]
gi|123613264|sp|Q3SRE4|NUOB_NITWN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|74420948|gb|ABA05147.1| NADH dehydrogenase subunit B [Nitrobacter winogradskyi Nb-255]
Length = 207
Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 139/177 (78%), Positives = 153/177 (86%)
Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
I+ + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAV
Sbjct: 30 TSILDPATGRPVGASDPYFLEVNHELSDKGFFVAAADDLITWARTGSLMWMTFGLACCAV 89
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
EMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 90 EMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 149
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRRVG ++
Sbjct: 150 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRVGTIE 206
>gi|220924006|ref|YP_002499308.1| NADH dehydrogenase subunit B [Methylobacterium nodulans ORS 2060]
gi|238065169|sp|B8IUU7|NUOB_METNO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|219948613|gb|ACL59005.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium nodulans
ORS 2060]
Length = 197
Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 137/182 (75%), Positives = 154/182 (84%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + D F I+ E+ +GFL+T+ D L+TWARTGSLMWMTFGL
Sbjct: 15 IAPQPKGIIDPATGLPVGATDPTFLSINDELADRGFLLTTADDLITWARTGSLMWMTFGL 74
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 75 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 134
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G
Sbjct: 135 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTGT 194
Query: 183 VK 184
++
Sbjct: 195 IE 196
>gi|209885052|ref|YP_002288909.1| NADH-quinone oxidoreductase subunit b 1 [Oligotropha
carboxidovorans OM5]
gi|238065186|sp|B6JGW0|NUOB_OLICO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|209873248|gb|ACI93044.1| NADH-quinone oxidoreductase subunit b 1 [Oligotropha
carboxidovorans OM5]
Length = 198
Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 137/182 (75%), Positives = 156/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
++ ++ ++ + D F I+ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 16 VSQPATGVLDPRTGQPVGADDRYFLEINHELSDKGFFVAAADDLITWARTGSLMWMTFGL 75
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 76 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 135
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+LLLQKKIRR+G
Sbjct: 136 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLLLQKKIRRIGT 195
Query: 183 VK 184
++
Sbjct: 196 IE 197
>gi|126461943|ref|YP_001043057.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17029]
gi|218528014|sp|A3PIW9|NUOB1_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|126103607|gb|ABN76285.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
ATCC 17029]
Length = 176
Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 131/161 (81%), Positives = 143/161 (88%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D D ++ E+ KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM SMPRYD+ERF
Sbjct: 14 DYDTQSLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 73
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 74 GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 133
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 134 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 174
>gi|148236498|ref|NP_001088930.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
(NADH-coenzyme Q reductase) [Xenopus laevis]
gi|57032922|gb|AAH88820.1| LOC496303 protein [Xenopus laevis]
Length = 180
Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 118/165 (71%), Positives = 134/165 (81%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
V + + S F++T +D+LV WAR SL MTFGLACCAVEMM + PRYD+
Sbjct: 11 RAVQSLQKKTSLPSNKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDM 70
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
+RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYS
Sbjct: 71 DRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYS 130
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++
Sbjct: 131 YSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 175
>gi|56606108|ref|NP_001008525.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial [Rattus norvegicus]
gi|55824717|gb|AAH86574.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Rattus norvegicus]
gi|149034571|gb|EDL89308.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_d
[Rattus norvegicus]
Length = 218
Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats.
Identities = 119/183 (65%), Positives = 140/183 (76%), Gaps = 5/183 (2%)
Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
G + Q +S + ++ + R + ++VT +D L+ WAR SL MTFG
Sbjct: 36 GSPSSTQSAVSKAGAGAVVPKPSHLPR-----SRAEYVVTKLDDLINWARRSSLWPMTFG 90
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
LACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 91 LACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPR 150
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
YV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R
Sbjct: 151 YVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQ 210
Query: 182 NVK 184
+K
Sbjct: 211 KLK 213
>gi|294083712|ref|YP_003550469.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
oxidoreductase [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663284|gb|ADE38385.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
oxidoreductase [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 182
Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats.
Identities = 119/178 (66%), Positives = 141/178 (79%), Gaps = 3/178 (1%)
Query: 9 KIISGQSSCSLEK---VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+I ++ + DA + EIT++GF++ D+L WAR+GSL MTFGLACC
Sbjct: 2 GVIDPYNAPPIPPGADQDAILKAVGDEITNRGFVIAKADKLFNWARSGSLWPMTFGLACC 61
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
AVEMM ++ RYD++R+G R SPRQSDVMIVAGTLTNKMA ALRRVYDQMPEPR+V+S
Sbjct: 62 AVEMMHSAASRYDMDRYGMLFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWVLS 121
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
MGSCANGGGYYHYSY+VVRGCDRIVPVD+YVPGCPPTAEALIYG+L LQKKIRR +
Sbjct: 122 MGSCANGGGYYHYSYAVVRGCDRIVPVDVYVPGCPPTAEALIYGLLQLQKKIRRTATI 179
>gi|198431614|ref|XP_002130919.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
[Ciona intestinalis]
Length = 236
Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats.
Identities = 115/174 (66%), Positives = 139/174 (79%)
Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
K I + + L+ + ++ SR+ + + ++ T +D LV + RT SL MTFGLACCAV
Sbjct: 36 DKKIETEPAQVLQPIRSEISRLKNADSRGEYIATRIDDLVNYVRTNSLWPMTFGLACCAV 95
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
EMM + PRYD++RFG RASPRQSD+MIVAGTLTNKMA ALRRVYDQM +P++V+SMG
Sbjct: 96 EMMHFAAPRYDMDRFGVVFRASPRQSDLMIVAGTLTNKMAPALRRVYDQMADPKWVLSMG 155
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK+RR
Sbjct: 156 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKVRRTK 209
>gi|329114679|ref|ZP_08243438.1| NADH-quinone oxidoreductase subunit B 2 [Acetobacter pomorum DM001]
gi|326696159|gb|EGE47841.1| NADH-quinone oxidoreductase subunit B 2 [Acetobacter pomorum DM001]
Length = 186
Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats.
Identities = 123/183 (67%), Positives = 144/183 (78%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M + + + ++ + DA I+ + KGF+V ++D+LV W RTGSL M+F
Sbjct: 1 MTANQQDAVLWNREALPPGPEQDAVVRGITGVLAEKGFVVANLDKLVNWGRTGSLWPMSF 60
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEM+ A MPRYDL+R G PR SPRQSDVMIVAGTLTNKMA LRR+Y+QM EP
Sbjct: 61 GLACCAVEMIHAYMPRYDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPVLRRLYEQMAEP 120
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGI+LLQKKIRR
Sbjct: 121 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIMLLQKKIRRT 180
Query: 181 GNV 183
G +
Sbjct: 181 GTI 183
>gi|188580284|ref|YP_001923729.1| NADH dehydrogenase subunit B [Methylobacterium populi BJ001]
gi|238065170|sp|B1ZA45|NUOB_METPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|179343782|gb|ACB79194.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium populi
BJ001]
Length = 195
Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats.
Identities = 138/182 (75%), Positives = 154/182 (84%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + D F ISSE+ +GFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 13 IAPAPKGIIDPATGRPIGANDPTFLSISSELADRGFLVTSADELINWARTGSLMWMTFGL 72
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 73 ACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 132
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR G
Sbjct: 133 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRTGT 192
Query: 183 VK 184
++
Sbjct: 193 IE 194
>gi|330994055|ref|ZP_08317985.1| NADH-quinone oxidoreductase subunit B 2 [Gluconacetobacter sp.
SXCC-1]
gi|329759001|gb|EGG75515.1| NADH-quinone oxidoreductase subunit B 2 [Gluconacetobacter sp.
SXCC-1]
Length = 192
Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats.
Identities = 129/184 (70%), Positives = 145/184 (78%), Gaps = 1/184 (0%)
Query: 2 GLTTVNQKII-SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
G I + + + DA I+ E+T KGF+V ++D+LV W RTGSL M+F
Sbjct: 7 GTERPADSIAWNREMLPPGPEQDAVIKGITGEMTEKGFVVANLDRLVNWGRTGSLWPMSF 66
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEM+ A MPRYDL+R G PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EP
Sbjct: 67 GLACCAVEMIHAYMPRYDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEP 126
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGIL LQKKIRR
Sbjct: 127 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGILQLQKKIRRT 186
Query: 181 GNVK 184
G ++
Sbjct: 187 GTIR 190
>gi|21312950|ref|NP_083548.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial precursor [Mus musculus]
gi|47117311|sp|Q9DC70|NDUS7_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
7, mitochondrial; AltName: Full=Complex I-20kD;
Short=CI-20kD; AltName: Full=NADH-ubiquinone
oxidoreductase 20 kDa subunit; Flags: Precursor
gi|12833606|dbj|BAB22592.1| unnamed protein product [Mus musculus]
gi|15488721|gb|AAH13503.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Mus musculus]
gi|148699633|gb|EDL31580.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_b [Mus
musculus]
Length = 224
Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats.
Identities = 115/151 (76%), Positives = 130/151 (86%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ ++VT +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+
Sbjct: 69 SRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 128
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 129 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 188
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IYVPGCPPTAEAL+YGIL LQ+KI+R +K
Sbjct: 189 IYVPGCPPTAEALLYGILQLQRKIKREQKLK 219
>gi|91977356|ref|YP_570015.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisB5]
gi|122969140|sp|Q135X5|NUOB2_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|91683812|gb|ABE40114.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
BisB5]
Length = 199
Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats.
Identities = 136/182 (74%), Positives = 152/182 (83%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ II + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 17 IARAPSGIIDPNTGKPVGADDPFFLGVNRELSDKGFFVAATDDLITWARTGSLMWMTFGL 76
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 77 ACCAVEMMQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 136
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G
Sbjct: 137 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 196
Query: 183 VK 184
++
Sbjct: 197 IE 198
>gi|84000019|ref|NP_001033111.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial precursor [Bos taurus]
gi|1171865|sp|P42026|NDUS7_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
7, mitochondrial; AltName: Full=Complex I-20kD;
Short=CI-20kD; AltName: Full=NADH-ubiquinone
oxidoreductase 20 kDa subunit; AltName: Full=PSST
subunit; Flags: Precursor
gi|599691|emb|CAA46154.1| PSST subunit of the NADH: ubiquinone oxidoreductase complex [Bos
taurus]
gi|83638667|gb|AAI09717.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
(NADH-coenzyme Q reductase) [Bos taurus]
gi|296485358|gb|DAA27473.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial precursor [Bos taurus]
Length = 216
Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats.
Identities = 118/186 (63%), Positives = 139/186 (74%), Gaps = 4/186 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEI----THKGFLVTSVDQLVTWARTGSLMWM 58
+ V+ + + S + V + + + ++V +D L+ WAR SL M
Sbjct: 26 VRGVHSSMAADSPSSTQPAVSQARAVVPKPAALPSSRGEYVVAKLDDLINWARRSSLWPM 85
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 86 TFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 145
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+
Sbjct: 146 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIK 205
Query: 179 RVGNVK 184
R ++
Sbjct: 206 REKRLR 211
>gi|296444795|ref|ZP_06886758.1| NADH-quinone oxidoreductase, B subunit [Methylosinus trichosporium
OB3b]
gi|296257743|gb|EFH04807.1| NADH-quinone oxidoreductase, B subunit [Methylosinus trichosporium
OB3b]
Length = 194
Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats.
Identities = 130/182 (71%), Positives = 156/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + ++ ++ + D + ++ E+ KGF+VT+ D ++ WARTGSLMWMTFGL
Sbjct: 12 VAPSAKGLVDPRTGKPVGADDPFYLGLNDELADKGFVVTATDDIINWARTGSLMWMTFGL 71
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEM+QA+MPRYDLERFGFAPRASPRQSDV+I+AGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72 ACCAVEMIQAAMPRYDLERFGFAPRASPRQSDVIIIAGTLTNKMAPALRKVYDQMPEPRY 131
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPP+AEAL+YG+LLLQKKIRR G
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPSAEALVYGVLLLQKKIRRSGT 191
Query: 183 VK 184
++
Sbjct: 192 IE 193
>gi|296116534|ref|ZP_06835144.1| NADH dehydrogenase subunit B [Gluconacetobacter hansenii ATCC
23769]
gi|295976746|gb|EFG83514.1| NADH dehydrogenase subunit B [Gluconacetobacter hansenii ATCC
23769]
Length = 192
Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats.
Identities = 126/167 (75%), Positives = 140/167 (83%)
Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
+ DA ++ EIT KGF+V ++D++V W RTGSL M+FGLACCAVEM+ A MPR
Sbjct: 23 PPGPEQDAVIRGVTGEITEKGFVVANLDKIVNWGRTGSLWPMSFGLACCAVEMIHAYMPR 82
Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
YDL+R G PR SPRQSDVMIVAGTLTNKMA ALRRVYDQM EPR+VISMGSCANGGGYY
Sbjct: 83 YDLDRMGIIPRGSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYY 142
Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
HYSYSVVRGCDRIVPVD+YVPGCPPTAEALIYGIL LQKKIRR G +
Sbjct: 143 HYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGILQLQKKIRRTGTI 189
>gi|147902669|ref|NP_001087274.1| MGC85267 protein [Xenopus laevis]
gi|51873813|gb|AAH78494.1| MGC85267 protein [Xenopus laevis]
Length = 217
Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats.
Identities = 116/151 (76%), Positives = 130/151 (86%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
F++T +D+LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+
Sbjct: 62 NKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 121
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 122 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 181
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IYVPGCPPTAEAL+YGIL LQKKI+R ++
Sbjct: 182 IYVPGCPPTAEALLYGILQLQKKIKREKRLR 212
>gi|308321280|gb|ADO27792.1| mitochondrial NADH dehydrogenase iron-sulfur protein 7 [Ictalurus
furcatus]
Length = 217
Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats.
Identities = 114/151 (75%), Positives = 129/151 (85%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+
Sbjct: 62 SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 121
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 122 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 181
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IYVPGCPPTAEAL+YG L LQ+KI+R ++
Sbjct: 182 IYVPGCPPTAEALLYGTLQLQRKIKREKKMR 212
>gi|163850516|ref|YP_001638559.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium extorquens
PA1]
gi|218529213|ref|YP_002420029.1| NADH dehydrogenase subunit B [Methylobacterium chloromethanicum
CM4]
gi|240137581|ref|YP_002962052.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B)
[Methylobacterium extorquens AM1]
gi|254560052|ref|YP_003067147.1| NADH-quinone oxidoreductase subunit B [Methylobacterium extorquens
DM4]
gi|238065167|sp|A9W1N2|NUOB_METEP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|254767795|sp|B7KQ65|NUOB_METC4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|163662121|gb|ABY29488.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium extorquens
PA1]
gi|218521516|gb|ACK82101.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium
chloromethanicum CM4]
gi|240007549|gb|ACS38775.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B)
[Methylobacterium extorquens AM1]
gi|254267330|emb|CAX23162.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B)
[Methylobacterium extorquens DM4]
Length = 195
Score = 241 bits (614), Expect = 4e-62, Method: Composition-based stats.
Identities = 136/182 (74%), Positives = 154/182 (84%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + D F I+ E+ +GFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 13 IAPAPKGIIDPATGRPIGANDPTFLSINDELADRGFLVTSADELINWARTGSLMWMTFGL 72
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 73 ACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 132
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR+G
Sbjct: 133 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRIGT 192
Query: 183 VK 184
++
Sbjct: 193 IE 194
>gi|170742512|ref|YP_001771167.1| NADH dehydrogenase subunit B [Methylobacterium sp. 4-46]
gi|238065172|sp|B0ULK5|NUOB_METS4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|168196786|gb|ACA18733.1| NADH-quinone oxidoreductase, B subunit [Methylobacterium sp. 4-46]
Length = 195
Score = 241 bits (614), Expect = 4e-62, Method: Composition-based stats.
Identities = 136/182 (74%), Positives = 154/182 (84%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + I+ + + D F I+ E+ +GFL+T+ D L+TWARTGSLMWMTFGL
Sbjct: 13 IAPEPKGILDPATGLPIGATDPTFLSINDELADRGFLLTTADDLITWARTGSLMWMTFGL 72
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 73 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 132
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQKKIRR G
Sbjct: 133 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQKKIRRTGT 192
Query: 183 VK 184
++
Sbjct: 193 IE 194
>gi|86749691|ref|YP_486187.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris HaA2]
gi|86572719|gb|ABD07276.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
HaA2]
Length = 204
Score = 241 bits (614), Expect = 4e-62, Method: Composition-based stats.
Identities = 137/182 (75%), Positives = 152/182 (83%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ II + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 22 IARAPSGIIDPNTGKPVGADDPFFLDVNRELSDKGFFVAATDDLITWARTGSLMWMTFGL 81
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 82 ACCAVEMMQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 141
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++LLQKKIRR G
Sbjct: 142 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 201
Query: 183 VK 184
++
Sbjct: 202 IE 203
>gi|118404166|ref|NP_001072396.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kDa
(NADH-coenzyme Q reductase) [Xenopus (Silurana)
tropicalis]
gi|113197754|gb|AAI21597.1| hypothetical protein MGC147194 [Xenopus (Silurana) tropicalis]
Length = 217
Score = 241 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 116/151 (76%), Positives = 130/151 (86%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
F++T +D+LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+
Sbjct: 62 NKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 121
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 122 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 181
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IYVPGCPPTAEAL+YGIL LQKKI+R ++
Sbjct: 182 IYVPGCPPTAEALLYGILQLQKKIKREKRLR 212
>gi|157803902|ref|YP_001492451.1| NADH dehydrogenase subunit B [Rickettsia canadensis str. McKiel]
gi|218528018|sp|A8EZ83|NUOB_RICCK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|157785165|gb|ABV73666.1| NADH dehydrogenase beta subunit [Rickettsia canadensis str. McKiel]
Length = 174
Score = 241 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 112/160 (70%), Positives = 137/160 (85%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ ++++++++GFL+T VD ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG
Sbjct: 8 EDEILNNKLSNRGFLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGM 67
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVR
Sbjct: 68 LFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVR 127
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDRIVPVDIY+PGCPPTAEALIYG++ LQKKI+R K
Sbjct: 128 GCDRIVPVDIYIPGCPPTAEALIYGLMQLQKKIKRTTGFK 167
>gi|326934474|ref|XP_003213314.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial-like, partial [Meleagris gallopavo]
Length = 212
Score = 241 bits (614), Expect = 5e-62, Method: Composition-based stats.
Identities = 115/152 (75%), Positives = 130/152 (85%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
+ ++VT +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ
Sbjct: 56 TSRGEYIVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 115
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 116 ADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 175
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
DIYVPGCPPTAEAL+YGIL LQKKI+R ++
Sbjct: 176 DIYVPGCPPTAEALLYGILQLQKKIKREKKIQ 207
>gi|23006634|ref|ZP_00048864.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related
Fe-S oxidoreductases [Magnetospirillum magnetotacticum
MS-1]
Length = 195
Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats.
Identities = 136/182 (74%), Positives = 154/182 (84%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + D F I+ E+ +GFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 13 IAPAPKGIIDPATGRPIGANDPTFLSINDELADRGFLVTSADELINWARTGSLMWMTFGL 72
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 73 ACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 132
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPP+AEAL+YG+LLLQ+KIRR+G
Sbjct: 133 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPSAEALLYGVLLLQRKIRRLGT 192
Query: 183 VK 184
++
Sbjct: 193 IE 194
>gi|225707068|gb|ACO09380.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
[Osmerus mordax]
Length = 220
Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats.
Identities = 115/152 (75%), Positives = 129/152 (84%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
+ +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ
Sbjct: 64 TSKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQ 123
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
SDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPV
Sbjct: 124 SDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPV 183
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
DIYVPGCPPTAEAL+YG L LQKKI+R ++
Sbjct: 184 DIYVPGCPPTAEALLYGTLQLQKKIKREKKMR 215
>gi|198285499|gb|ACH85288.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Salmo salar]
Length = 215
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 114/151 (75%), Positives = 129/151 (85%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+
Sbjct: 60 SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 119
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVD
Sbjct: 120 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 179
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IYVPGCPPTAEAL+YG L LQKKI+R ++
Sbjct: 180 IYVPGCPPTAEALLYGTLQLQKKIKREKKMR 210
>gi|318054193|ref|NP_001187743.1| mitochondrial NADH dehydrogenase (ubiquinone) iron-sulfur protein 7
[Ictalurus punctatus]
gi|308323857|gb|ADO29064.1| mitochondrial NADH dehydrogenase (ubiquinone) iron-sulfur protein 7
[Ictalurus punctatus]
Length = 217
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 114/151 (75%), Positives = 129/151 (85%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+
Sbjct: 62 SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 121
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 122 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 181
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IYVPGCPPTAEAL+YG L LQ+KI+R ++
Sbjct: 182 IYVPGCPPTAEALLYGTLQLQRKIKREKKMR 212
>gi|138519723|gb|AAI35870.1| hypothetical protein MGC147194 [Xenopus (Silurana) tropicalis]
Length = 217
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 115/151 (76%), Positives = 130/151 (86%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
F++T +D+LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+
Sbjct: 62 NKGEFVITKLDELVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 121
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVM+VAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 122 DVMVVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 181
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IYVPGCPPTAEAL+YGIL LQKKI+R ++
Sbjct: 182 IYVPGCPPTAEALLYGILQLQKKIKREKRLR 212
>gi|11466535|ref|NP_044784.1| NADH dehydrogenase subunit 10 [Reclinomonas americana]
gi|6647649|sp|O21272|NDUS7_RECAM RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit;
AltName: Full=NADH dehydrogenase subunit 10
gi|2258365|gb|AAD11899.1| NADH dehydrogenase subunit 10 [Reclinomonas americana]
Length = 182
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 115/158 (72%), Positives = 132/158 (83%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
F ++++ F+V+ +D+LV WAR GSL MTFGLACCAVEMM ++ RYDL+RFG
Sbjct: 19 FMILNNKQNKTEFIVSKMDELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGII 78
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG
Sbjct: 79 FRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRG 138
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
CDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+R
Sbjct: 139 CDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKRSRKT 176
>gi|114764719|ref|ZP_01443904.1| NADH dehydrogenase beta subunit [Pelagibaca bermudensis HTCC2601]
gi|114542919|gb|EAU45940.1| NADH dehydrogenase beta subunit [Roseovarius sp. HTCC2601]
Length = 206
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 128/181 (70%), Positives = 150/181 (82%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + ++ + + + ++ E++ KGFL+TSVD ++ WARTGSL WMTFGL
Sbjct: 24 VKSGPSSPVAYGTYRAGGDQEVATQALNRELSDKGFLLTSVDDVINWARTGSLHWMTFGL 83
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCA+EMM SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 84 ACCAIEMMHTSMPRYDLERFGSAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRY 143
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG++ LQKKIRR G
Sbjct: 144 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGLMALQKKIRRTGT 203
Query: 183 V 183
+
Sbjct: 204 I 204
>gi|85717029|ref|ZP_01047991.1| NADH dehydrogenase beta subunit [Nitrobacter sp. Nb-311A]
gi|85696153|gb|EAQ34049.1| NADH dehydrogenase beta subunit [Nitrobacter sp. Nb-311A]
Length = 200
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 139/177 (78%), Positives = 154/177 (87%)
Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
I+ + S+ D F ++ E++ KGF V + D L+TWARTGSLMWMTFGLACCAV
Sbjct: 23 TSILDPGTGRSVGAGDPYFLEVNHELSDKGFFVAAADDLITWARTGSLMWMTFGLACCAV 82
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
EMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 83 EMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 142
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGILLLQKKIRRVG ++
Sbjct: 143 SCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILLLQKKIRRVGTIE 199
>gi|11466592|ref|NP_066482.1| NADH dehydrogenase subunit 10 [Rhodomonas salina]
gi|10444179|gb|AAG17753.1|AF288090_29 NADH dehydrogenase subunit 10 [Rhodomonas salina]
Length = 158
Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats.
Identities = 112/152 (73%), Positives = 129/152 (84%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
+ F+++ +D L+ WAR GSL MTFGLACCAVEMM A RYD +RFG RASPRQ
Sbjct: 2 LNKTKFVISKIDDLLNWARRGSLWPMTFGLACCAVEMMHAGASRYDFDRFGIIFRASPRQ 61
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
SD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH+SYSVVRGCD+IVPV
Sbjct: 62 SDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHFSYSVVRGCDKIVPV 121
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D++VPGCPPTAEAL+YGIL LQKKI+R V+
Sbjct: 122 DVFVPGCPPTAEALLYGILQLQKKIKRTKTVQ 153
>gi|146278043|ref|YP_001168202.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17025]
gi|218528015|sp|A4WU33|NUOB2_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|145556284|gb|ABP70897.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
ATCC 17025]
Length = 174
Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats.
Identities = 130/161 (80%), Positives = 144/161 (89%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D D + ++ E+ KGFL+T+ + L+ WARTGSL WMTFGLACCAVEMM SMPRYD+ERF
Sbjct: 12 DYDTAGLNRELQDKGFLLTTTEDLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDVERF 71
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 72 GVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G +
Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTI 172
>gi|73987562|ref|XP_533960.2| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
[Canis familiaris]
Length = 216
Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats.
Identities = 117/186 (62%), Positives = 139/186 (74%), Gaps = 4/186 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEI----THKGFLVTSVDQLVTWARTGSLMWM 58
+ V+ + S + V + + + + ++V +D L+ WAR SL M
Sbjct: 26 VRGVHSSVAVDSPSSTQPAVSSAGAVVPKSSALPSSRGEYVVAKLDDLINWARRSSLWPM 85
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 86 TFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 145
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+
Sbjct: 146 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIK 205
Query: 179 RVGNVK 184
R ++
Sbjct: 206 REKKLR 211
>gi|83311885|ref|YP_422149.1| NADH dehydrogenase subunit B [Magnetospirillum magneticum AMB-1]
gi|123541537|sp|Q2W3I5|NUOB_MAGMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|82946726|dbj|BAE51590.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
oxidoreductase [Magnetospirillum magneticum AMB-1]
Length = 186
Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats.
Identities = 126/184 (68%), Positives = 145/184 (78%), Gaps = 3/184 (1%)
Query: 3 LTTVNQKIISGQSSCSLEKVDAD---FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
+ I+S + +L A +++EI+ KGF++ SVD +V WARTGSL MT
Sbjct: 1 MNPSAGGILSPDHAAALPPGPAQDALLKAVTTEISDKGFVLASVDAVVNWARTGSLWPMT 60
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A RYD++RFG R SPRQSD+MIVAGTLTNKMA ALRRVYDQM E
Sbjct: 61 FGLACCAVEMMHAGCSRYDMDRFGVVFRPSPRQSDLMIVAGTLTNKMAPALRRVYDQMAE 120
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGIL LQKKIRR
Sbjct: 121 PRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALMYGILQLQKKIRR 180
Query: 180 VGNV 183
G++
Sbjct: 181 TGSI 184
>gi|46202360|ref|ZP_00053337.2| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related
Fe-S oxidoreductases [Magnetospirillum magnetotacticum
MS-1]
Length = 186
Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats.
Identities = 126/184 (68%), Positives = 145/184 (78%), Gaps = 3/184 (1%)
Query: 3 LTTVNQKIISGQSSCSLEKVDAD---FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
+ I+S + +L A +++EI+ KGF++ SVD +V WARTGSL MT
Sbjct: 1 MNPGTGGILSPDHAAALPPGPAQDALLKAVTTEISDKGFVLASVDAVVNWARTGSLWPMT 60
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A RYD++RFG R SPRQSD+MIVAGTLTNKMA ALRRVYDQM E
Sbjct: 61 FGLACCAVEMMHAGCSRYDMDRFGVVFRPSPRQSDLMIVAGTLTNKMAPALRRVYDQMAE 120
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YGIL LQKKIRR
Sbjct: 121 PRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALMYGILQLQKKIRR 180
Query: 180 VGNV 183
G++
Sbjct: 181 TGSI 184
>gi|114799608|ref|YP_760447.1| NADH dehydrogenase subunit B [Hyphomonas neptunium ATCC 15444]
gi|122942427|sp|Q0C1E6|NUOB_HYPNA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|114739782|gb|ABI77907.1| NADH-quinone oxidoreductase, B subunit [Hyphomonas neptunium ATCC
15444]
Length = 190
Score = 240 bits (612), Expect = 8e-62, Method: Composition-based stats.
Identities = 128/162 (79%), Positives = 142/162 (87%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D +S +S ++ KG+ + D L++WARTGSLMWMTFGLACCAVEMM A PRYDLERF
Sbjct: 28 DPFYSGLSDQLADKGYFTAAADDLISWARTGSLMWMTFGLACCAVEMMHAGNPRYDLERF 87
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 88 GMAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 147
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VRGCDRIVPVDIY+PGCPPTAEAL+YG L LQKKIRR G+++
Sbjct: 148 VRGCDRIVPVDIYIPGCPPTAEALVYGFLQLQKKIRREGSIE 189
>gi|209730616|gb|ACI66177.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
[Salmo salar]
gi|209731354|gb|ACI66546.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
[Salmo salar]
gi|223646164|gb|ACN09840.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
[Salmo salar]
gi|223672011|gb|ACN12187.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
[Salmo salar]
gi|303660793|gb|ADM16006.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
[Salmo salar]
Length = 220
Score = 240 bits (612), Expect = 8e-62, Method: Composition-based stats.
Identities = 114/151 (75%), Positives = 129/151 (85%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+
Sbjct: 65 SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 124
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVD
Sbjct: 125 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 184
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IYVPGCPPTAEAL+YG L LQKKI+R ++
Sbjct: 185 IYVPGCPPTAEALLYGTLQLQKKIKREKKMR 215
>gi|315583009|ref|NP_001186841.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, (NADH-coenzyme Q
reductase) [Danio rerio]
Length = 217
Score = 240 bits (612), Expect = 8e-62, Method: Composition-based stats.
Identities = 115/151 (76%), Positives = 129/151 (85%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+
Sbjct: 62 SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 121
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 122 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 181
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IYVPGCPPTAEAL+YG L LQ+KI+R +K
Sbjct: 182 IYVPGCPPTAEALLYGTLQLQRKIKREKRMK 212
>gi|316969245|gb|EFV53373.1| NADH dehydrogenase I, B subunit [Trichinella spiralis]
Length = 803
Score = 240 bits (612), Expect = 9e-62, Method: Composition-based stats.
Identities = 104/175 (59%), Positives = 132/175 (75%), Gaps = 5/175 (2%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + + F++++S + + D L+ WAR GSL +TFGLACCA+EMM
Sbjct: 342 ADKPPRDISWTGTPFTKVNSA---AEYALARADDLINWARRGSLWPLTFGLACCAIEMMH 398
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR--VYDQMPEPRYVISMGSC 129
+ PRYD++RFG RASPRQ+D MI+AGT+TNKMA ALRR +YDQMP+P++VISMGSC
Sbjct: 399 FAAPRYDMDRFGIVFRASPRQADCMIIAGTVTNKMAPALRRVNIYDQMPDPKWVISMGSC 458
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
ANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPP+AEAL+Y L LQKKI+ + +
Sbjct: 459 ANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPSAEALLYAFLQLQKKIKGMTRAQ 513
>gi|256821516|ref|YP_003145479.1| NADH-quinone oxidoreductase subunit B [Kangiella koreensis DSM
16069]
gi|256795055|gb|ACV25711.1| NADH-quinone oxidoreductase, B subunit [Kangiella koreensis DSM
16069]
Length = 186
Score = 240 bits (612), Expect = 9e-62, Method: Composition-based stats.
Identities = 114/156 (73%), Positives = 129/156 (82%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ ++ GF+ TS+ L WARTGS+ +TFGLACCA+EMM A RYD++RFG R
Sbjct: 2 GLEQQLQGDGFVTTSIKDLFDWARTGSMWPVTFGLACCAIEMMHAGAARYDMDRFGVIFR 61
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
SPRQSDVMIVAGTLTNKMA ALRRVYDQMPEP++VISMGSCANGGGYYHYSYSVVRGCD
Sbjct: 62 PSPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVVRGCD 121
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
RIVPVDIYVPGCPPTAEAL+YGI+ LQ KIRR +
Sbjct: 122 RIVPVDIYVPGCPPTAEALLYGIIQLQNKIRRQKVI 157
>gi|182679352|ref|YP_001833498.1| NADH-quinone oxidoreductase, B subunit [Beijerinckia indica subsp.
indica ATCC 9039]
gi|238055244|sp|B2IHW6|NUOB_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|182635235|gb|ACB96009.1| NADH-quinone oxidoreductase, B subunit [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 180
Score = 240 bits (612), Expect = 9e-62, Method: Composition-based stats.
Identities = 140/184 (76%), Positives = 154/184 (83%), Gaps = 5/184 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
MGL Q ++ + D F I+ ++ KGFLVTS D+L+ WARTGSLMWMTF
Sbjct: 1 MGLIATPQPVVGTPPAQ-----DNYFLSINDQLADKGFLVTSTDELINWARTGSLMWMTF 55
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMMQ SMPRYD ERFGFAPR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 56 GLACCAVEMMQMSMPRYDCERFGFAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEP 115
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP+AEAL+YG+LLLQKKIRR
Sbjct: 116 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALLYGVLLLQKKIRRT 175
Query: 181 GNVK 184
G ++
Sbjct: 176 GTIE 179
>gi|39936016|ref|NP_948292.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris CGA009]
gi|192291671|ref|YP_001992276.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris TIE-1]
gi|81562349|sp|Q6N5M3|NUOB1_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|238065014|sp|B3Q7N5|NUOB1_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|39649870|emb|CAE28392.1| NADH-ubiquinone dehydrogenase chain B [Rhodopseudomonas palustris
CGA009]
gi|192285420|gb|ACF01801.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
TIE-1]
Length = 198
Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats.
Identities = 136/182 (74%), Positives = 152/182 (83%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ II + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 16 IARPATGIIDPNTGRPVGADDPFFLNVNRELSDKGFFVAATDDLITWARTGSLMWMTFGL 75
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 76 ACCAVEMMQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 135
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G
Sbjct: 136 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 195
Query: 183 VK 184
++
Sbjct: 196 IE 197
>gi|260434181|ref|ZP_05788152.1| NADH-quinone oxidoreductase, b subunit [Silicibacter
lacuscaerulensis ITI-1157]
gi|260418009|gb|EEX11268.1| NADH-quinone oxidoreductase, b subunit [Silicibacter
lacuscaerulensis ITI-1157]
Length = 174
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 130/172 (75%), Positives = 146/172 (84%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADF--SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + VD + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1 MTGANTAGVDKEVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMH 60
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCAN
Sbjct: 61 TSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCAN 120
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 121 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 172
>gi|332023286|gb|EGI63540.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial [Acromyrmex echinatior]
Length = 224
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 112/180 (62%), Positives = 132/180 (73%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
+ ++ + +S + + D L+ W R GSL MTFGLAC
Sbjct: 40 ATETSVQEAKTQLPEKSKVEPYSPFQKPSNMAEYALARADDLLNWGRKGSLWPMTFGLAC 99
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDV+IVAGTLTNKMA ALRR+YDQMPEPR+VI
Sbjct: 100 CAVEMMHIAAPRYDMDRFGVVFRASPRQSDVIIVAGTLTNKMAPALRRIYDQMPEPRWVI 159
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKKI+R+ +
Sbjct: 160 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKIKRMQTTQ 219
>gi|56697623|ref|YP_167992.1| NADH dehydrogenase subunit B [Ruegeria pomeroyi DSS-3]
gi|56679360|gb|AAV96026.1| NADH dehydrogenase I, B subunit [Ruegeria pomeroyi DSS-3]
Length = 184
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 130/172 (75%), Positives = 146/172 (84%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADF--SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + VD + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 11 MTGANTAGVDKEVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMH 70
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCAN
Sbjct: 71 TSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCAN 130
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 131 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 182
>gi|301776330|ref|XP_002923562.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 240
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 116/186 (62%), Positives = 138/186 (74%), Gaps = 4/186 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEI----THKGFLVTSVDQLVTWARTGSLMWM 58
+ V+ + + S + + + + ++V +D L+ WAR SL M
Sbjct: 50 VRGVHSSVAADSPSSTQPAASTAGAVVPKSTALPSSRGEYVVAKLDDLINWARRSSLWPM 109
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 110 TFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 169
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+
Sbjct: 170 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIK 229
Query: 179 RVGNVK 184
R ++
Sbjct: 230 RERKLR 235
>gi|148284880|ref|YP_001248970.1| NADH dehydrogenase subunit B [Orientia tsutsugamushi str. Boryong]
gi|189183819|ref|YP_001937604.1| NADH dehydrogenase subunit B [Orientia tsutsugamushi str. Ikeda]
gi|218528000|sp|A5CES0|NUOB_ORITB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528001|sp|B3CSG9|NUOB_ORITI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|146740319|emb|CAM80723.1| NADH dehydrogenase I chain B [Orientia tsutsugamushi str. Boryong]
gi|189180590|dbj|BAG40370.1| NADH dehydrogenase I chain B [Orientia tsutsugamushi str. Ikeda]
Length = 171
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 114/167 (68%), Positives = 135/167 (80%)
Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
S S + ++++GF++ +++ LV+WART SL MTFGLACCA+EMMQ + RY
Sbjct: 2 SENTFSDTTSIYNQNLSNQGFILANLENLVSWARTRSLWPMTFGLACCAIEMMQTAGSRY 61
Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
D++R+G R SPRQ+DVMIVAGTLTNKMA ALRRVYDQM EP++VISMGSCANGGGYYH
Sbjct: 62 DMDRYGMLFRPSPRQADVMIVAGTLTNKMAPALRRVYDQMTEPKWVISMGSCANGGGYYH 121
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSYSVVRGCD+IVPVDIYVPGCPPT EAL+YGIL LQKKI R VK
Sbjct: 122 YSYSVVRGCDKIVPVDIYVPGCPPTPEALLYGILQLQKKINRTQQVK 168
>gi|159043857|ref|YP_001532651.1| NADH dehydrogenase subunit B [Dinoroseobacter shibae DFL 12]
gi|218527990|sp|A8LIT6|NUOB_DINSH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|157911617|gb|ABV93050.1| NADH-quinone oxidoreductase [Dinoroseobacter shibae DFL 12]
Length = 177
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 127/155 (81%), Positives = 141/155 (90%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYD ERFG APRA
Sbjct: 21 LNNELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERFGIAPRA 80
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 81 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+VPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 141 VVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 175
>gi|254486398|ref|ZP_05099603.1| NADH-quinone oxidoreductase chain b [Roseobacter sp. GAI101]
gi|214043267|gb|EEB83905.1| NADH-quinone oxidoreductase chain b [Roseobacter sp. GAI101]
Length = 178
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 130/161 (80%), Positives = 142/161 (88%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERF
Sbjct: 16 DVATQNLNKELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERF 75
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 76 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 135
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 136 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 176
>gi|163738798|ref|ZP_02146212.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis BS107]
gi|163741491|ref|ZP_02148882.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis 2.10]
gi|161385225|gb|EDQ09603.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis 2.10]
gi|161388126|gb|EDQ12481.1| NADH dehydrogenase subunit B [Phaeobacter gallaeciensis BS107]
Length = 174
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 127/172 (73%), Positives = 146/172 (84%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADF--SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + VD + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1 MTGANTAGVDKEVVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMH 60
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCAN
Sbjct: 61 TSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCAN 120
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 121 GGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172
>gi|83942674|ref|ZP_00955135.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. EE-36]
gi|83953913|ref|ZP_00962634.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. NAS-14.1]
gi|83841858|gb|EAP81027.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. NAS-14.1]
gi|83846767|gb|EAP84643.1| NADH dehydrogenase beta subunit [Sulfitobacter sp. EE-36]
Length = 178
Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats.
Identities = 127/161 (78%), Positives = 142/161 (88%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERF
Sbjct: 16 DVATQNLNKELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERF 75
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 76 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 135
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VRGCDR+VPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR G +
Sbjct: 136 VRGCDRVVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTI 176
>gi|148555890|ref|YP_001263472.1| NADH dehydrogenase subunit B [Sphingomonas wittichii RW1]
gi|218528008|sp|A5VAL8|NUOB_SPHWW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|148501080|gb|ABQ69334.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas wittichii RW1]
Length = 187
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 131/188 (69%), Positives = 149/188 (79%), Gaps = 6/188 (3%)
Query: 1 MGLTTVNQKIISGQS----SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLM 56
MG+T ++ + F + +E+ KGFLVTS ++L WARTGSL
Sbjct: 1 MGVTL--DSALNPHKPEGFGEVVAPDPDYFKALQAEVNDKGFLVTSAEELFQWARTGSLW 58
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
WMTFGLACCAVEM+ +MPRYDLERFG APRASPRQSDVMIVAGTL NKMA ALRRVYDQ
Sbjct: 59 WMTFGLACCAVEMIHVNMPRYDLERFGAAPRASPRQSDVMIVAGTLCNKMAPALRRVYDQ 118
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
M EP+YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+K
Sbjct: 119 MSEPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRK 178
Query: 177 IRRVGNVK 184
IRR+G ++
Sbjct: 179 IRRIGTLE 186
>gi|254511808|ref|ZP_05123875.1| NADH dehydrogenase i, b subunit [Rhodobacteraceae bacterium KLH11]
gi|221535519|gb|EEE38507.1| NADH dehydrogenase i, b subunit [Rhodobacteraceae bacterium KLH11]
Length = 174
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 129/172 (75%), Positives = 146/172 (84%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADF--SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + VD + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1 MTGANTAGVDKEVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMH 60
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCAN
Sbjct: 61 TSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCAN 120
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 121 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTI 172
>gi|194212381|ref|XP_001503839.2| PREDICTED: similar to PSST subunit of the NADH: ubiquinone
oxidoreductase complex [Equus caballus]
Length = 259
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 118/184 (64%), Positives = 139/184 (75%), Gaps = 4/184 (2%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEI----THKGFLVTSVDQLVTWARTGSLMWMTF 60
V+ + + S + + + + + ++VT +D LV WAR SL MTF
Sbjct: 71 DVHASVATEGPSSTQPAMSKAGAVVPKPTALPSSRGEYVVTKLDDLVNWARRSSLWPMTF 130
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 131 GLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEP 190
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
RYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R
Sbjct: 191 RYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKRE 250
Query: 181 GNVK 184
++
Sbjct: 251 KRLR 254
>gi|218528064|sp|Q5LPR4|NUOB_SILPO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
Length = 177
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 130/172 (75%), Positives = 146/172 (84%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADF--SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + VD + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 4 MTGANTAGVDKEVATQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMH 63
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCAN
Sbjct: 64 TSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCAN 123
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 124 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQRKIRRTGTI 175
>gi|86137600|ref|ZP_01056177.1| NADH dehydrogenase beta subunit [Roseobacter sp. MED193]
gi|85825935|gb|EAQ46133.1| NADH dehydrogenase beta subunit [Roseobacter sp. MED193]
Length = 174
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 129/172 (75%), Positives = 146/172 (84%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADF--SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + VD + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1 MTGANTAGVDKEVVTQALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMH 60
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCAN
Sbjct: 61 TSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCAN 120
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 121 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172
>gi|163746197|ref|ZP_02153556.1| NADH dehydrogenase subunit B [Oceanibulbus indolifex HEL-45]
gi|161380942|gb|EDQ05352.1| NADH dehydrogenase subunit B [Oceanibulbus indolifex HEL-45]
Length = 204
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 129/161 (80%), Positives = 144/161 (89%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +SMPRYDLERF
Sbjct: 42 DVATHSLNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHSSMPRYDLERF 101
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 102 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 161
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 162 VRGCDRIVPVDVYVPGCPPTAEALLYGILQLQRKIRRTGTI 202
>gi|110680471|ref|YP_683478.1| NADH dehydrogenase subunit B [Roseobacter denitrificans OCh 114]
gi|123172224|sp|Q163Q1|NUOB_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|109456587|gb|ABG32792.1| NADH-quinone oxidoreductase chain B [Roseobacter denitrificans OCh
114]
Length = 177
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 125/157 (79%), Positives = 141/157 (89%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +MPRYD+ERFG AP
Sbjct: 19 QELNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTAP 78
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC
Sbjct: 79 RASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 138
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRIVPVD+YVPGCPPTAEAL+YGI+ LQ+KIRR G +
Sbjct: 139 DRIVPVDVYVPGCPPTAEALLYGIMQLQRKIRRTGTI 175
>gi|115524527|ref|YP_781438.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisA53]
gi|122296214|sp|Q07NM6|NUOB2_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|115518474|gb|ABJ06458.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
BisA53]
Length = 200
Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats.
Identities = 134/182 (73%), Positives = 155/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ I+ ++ + D F +++E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 18 IAPAATGILDPRTGRPVGADDRFFVEVNNELSDKGFFVAATDDLITWARTGSLMWMTFGL 77
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 78 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 137
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSY+VVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR+G
Sbjct: 138 VISMGSCANGGGYYHYSYAVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRIGT 197
Query: 183 VK 184
++
Sbjct: 198 IE 199
>gi|126740377|ref|ZP_01756065.1| NADH dehydrogenase subunit B [Roseobacter sp. SK209-2-6]
gi|126718513|gb|EBA15227.1| NADH dehydrogenase subunit B [Roseobacter sp. SK209-2-6]
Length = 174
Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 128/172 (74%), Positives = 146/172 (84%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADF--SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + VD + I++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1 MTGANTAGVDKEVVTQAINAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMH 60
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCAN
Sbjct: 61 TSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCAN 120
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 121 GGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172
>gi|99080583|ref|YP_612737.1| NADH dehydrogenase subunit B [Ruegeria sp. TM1040]
gi|123077741|sp|Q1GIP1|NUOB_SILST RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|99036863|gb|ABF63475.1| NADH-quinone oxidoreductase B subunit [Ruegeria sp. TM1040]
Length = 174
Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 129/172 (75%), Positives = 146/172 (84%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADF--SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + VD + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1 MAGANTAGVDKEMVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMH 60
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCAN
Sbjct: 61 TSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCAN 120
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 121 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172
>gi|89053661|ref|YP_509112.1| NADH dehydrogenase subunit B [Jannaschia sp. CCS1]
gi|122499244|sp|Q28T75|NUOB_JANSC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|88863210|gb|ABD54087.1| NADH dehydrogenase subunit B [Jannaschia sp. CCS1]
Length = 177
Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 130/173 (75%), Positives = 145/173 (83%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
++ + + + ++ E+ KGFLVTS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 3 VATNPNHAGADREVGTQALNRELQDKGFLVTSSEDIINWARTGSLHWMTFGLACCAVEMM 62
Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCA
Sbjct: 63 HTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCA 122
Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 123 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 175
>gi|229366862|gb|ACQ58411.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
[Anoplopoma fimbria]
Length = 219
Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 114/151 (75%), Positives = 128/151 (84%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ + +T +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+
Sbjct: 64 SKGEYAITKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 123
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 124 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 183
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IYVPGCPPTAEAL+YG L LQKKI+R ++
Sbjct: 184 IYVPGCPPTAEALLYGTLQLQKKIKREKKLR 214
>gi|148255914|ref|YP_001240499.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. BTAi1]
gi|238055271|sp|A5EK99|NUOB_BRASB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|146408087|gb|ABQ36593.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. BTAi1]
Length = 194
Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 136/182 (74%), Positives = 153/182 (84%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + I+ + + D F + E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 12 IAPAPKGILDPATGRPIGANDPYFLEVRHELSDKGFFVATADDLITWARTGSLMWMTFGL 71
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 72 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 131
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 132 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 191
Query: 183 VK 184
++
Sbjct: 192 IE 193
>gi|254476799|ref|ZP_05090185.1| NADH-quinone oxidoreductase chain b [Ruegeria sp. R11]
gi|214031042|gb|EEB71877.1| NADH-quinone oxidoreductase chain b [Ruegeria sp. R11]
Length = 177
Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 127/172 (73%), Positives = 146/172 (84%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADF--SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + VD + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 4 MTGANTAGVDKEMVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMH 63
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCAN
Sbjct: 64 TSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCAN 123
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 124 GGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 175
>gi|221108593|ref|XP_002170450.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein
7, partial [Hydra magnipapillata]
Length = 198
Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 116/148 (78%), Positives = 128/148 (86%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+V VD LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVM
Sbjct: 46 EFVVAKVDDLVNWARRSSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVM 105
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALRRVYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYV
Sbjct: 106 IVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYV 165
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184
PGCPPTAEAL+YG+L LQKKI+R +K
Sbjct: 166 PGCPPTAEALLYGVLQLQKKIKRTREIK 193
>gi|254465701|ref|ZP_05079112.1| NADH-quinone oxidoreductase chain b [Rhodobacterales bacterium Y4I]
gi|206686609|gb|EDZ47091.1| NADH-quinone oxidoreductase chain b [Rhodobacterales bacterium Y4I]
Length = 174
Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 127/172 (73%), Positives = 146/172 (84%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADF--SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + VD + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1 MTGANTAGVDKEVVTRALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMH 60
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCAN
Sbjct: 61 TSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCAN 120
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 121 GGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGLMQLQRKIRRTGTL 172
>gi|157825617|ref|YP_001493337.1| NADH dehydrogenase subunit B [Rickettsia akari str. Hartford]
gi|218528016|sp|A8GN54|NUOB_RICAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|157799575|gb|ABV74829.1| NADH dehydrogenase subunit B [Rickettsia akari str. Hartford]
Length = 174
Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 112/160 (70%), Positives = 136/160 (85%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ +++EI+++GFL+T +D ++ WAR SL MTFGLACCAVEMMQA+ RYD++RFG
Sbjct: 8 EDELLNNEISNRGFLLTKIDDIIGWARAHSLWPMTFGLACCAVEMMQAASSRYDMDRFGM 67
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R SPRQSD+MIVAGTLTNKMA ALR+VYDQM P++V+SMGSCANGGGYYH+SYSVVR
Sbjct: 68 LFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAVPKWVLSMGSCANGGGYYHFSYSVVR 127
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K
Sbjct: 128 GCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167
>gi|27380029|ref|NP_771558.1| NADH dehydrogenase subunit B [Bradyrhizobium japonicum USDA 110]
gi|81736772|sp|Q89KI7|NUOB_BRAJA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|27353183|dbj|BAC50183.1| NADH ubiqionone oxidoreductase chain B [Bradyrhizobium japonicum
USDA 110]
Length = 202
Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 138/182 (75%), Positives = 155/182 (85%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
L + I+ + + D F ++SE++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 20 LAPAPKGILDPSTGKPVGANDPFFLEVNSELSDKGFFVAATDDLITWARTGSLMWMTFGL 79
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 80 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 139
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 140 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 199
Query: 183 VK 184
++
Sbjct: 200 IE 201
>gi|146341114|ref|YP_001206162.1| NADH dehydrogenase subunit B [Bradyrhizobium sp. ORS278]
gi|238055272|sp|A4YVL1|NUOB_BRASO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|146193920|emb|CAL77937.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B)
(NDH-1, chain B) [Bradyrhizobium sp. ORS278]
Length = 193
Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats.
Identities = 136/182 (74%), Positives = 153/182 (84%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + I+ + + D F + E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 11 IAPAPKGILDPATGRPVGAHDPYFLEVKHELSDKGFFVATADDLITWARTGSLMWMTFGL 70
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 71 ACCAVEMMQVSMPRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 130
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 131 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVLLLQKKIRRTGT 190
Query: 183 VK 184
++
Sbjct: 191 IE 192
>gi|225704208|gb|ACO07950.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
[Oncorhynchus mykiss]
Length = 218
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 113/151 (74%), Positives = 128/151 (84%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ +++T +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASP Q+
Sbjct: 63 SKGEYVITKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPGQA 122
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDRIVPVD
Sbjct: 123 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 182
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IYVPGCPPTAEAL+YG L LQKKI+R ++
Sbjct: 183 IYVPGCPPTAEALLYGTLQLQKKIKREKKMR 213
>gi|197128812|gb|ACH45310.1| putative NADH dehydrogenase Fe-S protein 7 >Feature gb|DQ213771
[Taeniopygia guttata]
Length = 216
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 113/151 (74%), Positives = 129/151 (85%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ +++ +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+
Sbjct: 61 SRGEYVIAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 120
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 121 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 180
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IYVPGCPPTAEAL+YGIL LQ+KI+R ++
Sbjct: 181 IYVPGCPPTAEALLYGILQLQRKIKREKRMQ 211
>gi|90423901|ref|YP_532271.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris BisB18]
gi|122476336|sp|Q215I4|NUOB1_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|90105915|gb|ABD87952.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
BisB18]
Length = 201
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 134/182 (73%), Positives = 153/182 (84%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ I+ ++ + D F +++E+ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 19 VAPAATGILDPRTGRPVGADDRFFLEVNNELADKGFFVAATDDLITWARTGSLMWMTFGL 78
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 79 ACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 138
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSY+VVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G
Sbjct: 139 VISMGSCANGGGYYHYSYAVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 198
Query: 183 VK 184
++
Sbjct: 199 IE 200
>gi|259418740|ref|ZP_05742657.1| NADH-quinone oxidoreductase subunit b [Silicibacter sp. TrichCH4B]
gi|259344962|gb|EEW56816.1| NADH-quinone oxidoreductase subunit b [Silicibacter sp. TrichCH4B]
Length = 177
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 129/172 (75%), Positives = 146/172 (84%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADF--SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + VD + +++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 4 MAGANTAGVDKEVVTQALNAELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMH 63
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCAN
Sbjct: 64 TSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCAN 123
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G +
Sbjct: 124 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLMQLQRKIRRTGTL 175
>gi|163732066|ref|ZP_02139512.1| NADH dehydrogenase subunit B [Roseobacter litoralis Och 149]
gi|161394364|gb|EDQ18687.1| NADH dehydrogenase subunit B [Roseobacter litoralis Och 149]
Length = 177
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 126/157 (80%), Positives = 141/157 (89%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +MPRYD+ERFG AP
Sbjct: 19 QELNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTAP 78
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC
Sbjct: 79 RASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 138
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRIVPVDIYVPGCPPTAEAL+YGI+ LQ+KIRR G +
Sbjct: 139 DRIVPVDIYVPGCPPTAEALLYGIMQLQRKIRRTGTI 175
>gi|126729549|ref|ZP_01745362.1| NADH dehydrogenase subunit B [Sagittula stellata E-37]
gi|126709668|gb|EBA08721.1| NADH dehydrogenase subunit B [Sagittula stellata E-37]
Length = 174
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 129/172 (75%), Positives = 146/172 (84%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADF--SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + VD + ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM
Sbjct: 1 MTGANTAGVDREVATQDLNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMH 60
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCAN
Sbjct: 61 TSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCAN 120
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G +
Sbjct: 121 GGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALLYGIMALQKKIRRTGTL 172
>gi|85708754|ref|ZP_01039820.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B
[Erythrobacter sp. NAP1]
gi|85690288|gb|EAQ30291.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain B
[Erythrobacter sp. NAP1]
Length = 197
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 127/189 (67%), Positives = 151/189 (79%), Gaps = 5/189 (2%)
Query: 1 MGLTTVN-----QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSL 55
+G+T N + + ++ + + F + +E+ KGFLVTS + L WARTGSL
Sbjct: 8 VGITPPNNLPDVSALETAKAGEVRQPDEDYFRSLQTEVNDKGFLVTSTEDLFQWARTGSL 67
Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYD 115
WMTFGLACCAVEM+ +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYD
Sbjct: 68 WWMTFGLACCAVEMIHVNMPRYDMERFGIAPRASPRQSDVMIVAGTLCNKMAPALRKVYD 127
Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
QM +P+YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+
Sbjct: 128 QMSDPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQR 187
Query: 176 KIRRVGNVK 184
KIRR G ++
Sbjct: 188 KIRRSGTIE 196
>gi|316933892|ref|YP_004108874.1| NADH-quinone oxidoreductase subunit B [Rhodopseudomonas palustris
DX-1]
gi|315601606|gb|ADU44141.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
DX-1]
Length = 198
Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats.
Identities = 136/182 (74%), Positives = 152/182 (83%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ II + + D F ++ E++ KGF V + D L+TWARTGSLMWMTFGL
Sbjct: 16 IARPATGIIDPSTGKPVGANDPFFLNVNRELSDKGFFVAATDDLITWARTGSLMWMTFGL 75
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 76 ACCAVEMMQLSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 135
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YG++LLQKKIRR G
Sbjct: 136 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALLYGVMLLQKKIRRTGT 195
Query: 183 VK 184
++
Sbjct: 196 IE 197
>gi|85374165|ref|YP_458227.1| NADH dehydrogenase subunit B [Erythrobacter litoralis HTCC2594]
gi|84787248|gb|ABC63430.1| NuoB, NADH dehydrogenase I, B subunit [Erythrobacter litoralis
HTCC2594]
Length = 217
Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats.
Identities = 124/165 (75%), Positives = 142/165 (86%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ F+ + +E+ KGFLVTS + L WARTGSL WMTFGLACCAVEM+ +MPRYD+
Sbjct: 52 QPDGDYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDM 111
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMGSCANGGGYYHYS
Sbjct: 112 ERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMGSCANGGGYYHYS 171
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++
Sbjct: 172 YSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTIE 216
>gi|329889333|ref|ZP_08267676.1| NADH-quinone oxidoreductase subunit B [Brevundimonas diminuta ATCC
11568]
gi|328844634|gb|EGF94198.1| NADH-quinone oxidoreductase subunit B [Brevundimonas diminuta ATCC
11568]
Length = 192
Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats.
Identities = 127/162 (78%), Positives = 146/162 (90%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D F +++E+ +GFL TS+D ++TWARTGSLMWM+FGLACCAVEM+ SMPR+DLERF
Sbjct: 30 DKFFESVNTELGERGFLTTSLDDVITWARTGSLMWMSFGLACCAVEMIHLSMPRFDLERF 89
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APR SPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYVISMGSCANGGGYYHYSYSV
Sbjct: 90 GTAPRGSPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVISMGSCANGGGYYHYSYSV 149
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKIRR G ++
Sbjct: 150 VRGCDRVVPVDVYVPGCPPTAEALLYGILQLQKKIRRTGTIE 191
>gi|117926908|ref|YP_867525.1| NADH-quinone oxidoreductase subunit beta [Magnetococcus sp. MC-1]
gi|238065166|sp|A0LDS6|NUOB_MAGSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|117610664|gb|ABK46119.1| NADH dehydrogenase subunit B [Magnetococcus sp. MC-1]
Length = 167
Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats.
Identities = 116/158 (73%), Positives = 133/158 (84%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
+ E++ +GFL+TS D+LV W R+ S+ MTFGLACCAVEMM A RYDL+RFG
Sbjct: 2 IEELHQEVSDRGFLLTSADKLVNWGRSMSMWPMTFGLACCAVEMMNAGASRYDLDRFGVV 61
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
R SPRQSDV+IVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG
Sbjct: 62 FRGSPRQSDVIIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 121
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
CDRI+PVD+Y+PGCPPTAEA++YGI+ LQKKI R G V
Sbjct: 122 CDRILPVDVYIPGCPPTAEAVMYGIMQLQKKINREGQV 159
>gi|260800203|ref|XP_002595024.1| hypothetical protein BRAFLDRAFT_99644 [Branchiostoma floridae]
gi|229280264|gb|EEN51035.1| hypothetical protein BRAFLDRAFT_99644 [Branchiostoma floridae]
Length = 194
Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats.
Identities = 118/170 (69%), Positives = 134/170 (78%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
Q + D + + + + F+V +D LV WAR SL MTFGLACCAVEMM +
Sbjct: 19 QRIRLVPAEDTNAVTPAPKPSDAEFVVARLDDLVNWARRSSLWPMTFGLACCAVEMMHMA 78
Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGG
Sbjct: 79 APRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGG 138
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R +
Sbjct: 139 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKRTKTL 188
>gi|114771817|ref|ZP_01449210.1| NADH dehydrogenase subunit B [alpha proteobacterium HTCC2255]
gi|114547633|gb|EAU50524.1| NADH dehydrogenase subunit B [alpha proteobacterium HTCC2255]
Length = 177
Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats.
Identities = 128/157 (81%), Positives = 143/157 (91%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
S ++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM ++MPRYDLERFG AP
Sbjct: 19 SALNRELQDKGFLLTSAEDIINWARTGSLHWMTFGLACCAVEMMHSAMPRYDLERFGTAP 78
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC
Sbjct: 79 RASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 138
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 139 DRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 175
>gi|268370120|ref|NP_001161241.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial [Nasonia vitripennis]
Length = 217
Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats.
Identities = 107/170 (62%), Positives = 132/170 (77%), Gaps = 2/170 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
S +EK S + + + +D L+ W R GS+ +TFGLACCAVEMM +
Sbjct: 45 PSKPIEK--ESISPFPKKTNVVEYAMARLDDLLNWGRKGSMWPLTFGLACCAVEMMHIAA 102
Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
PRYD++RFG RASPR +DV+IVAGT+TNKMA ALR+VYDQMP+P++VISMGSCANGGG
Sbjct: 103 PRYDMDRFGVVFRASPRHADVIIVAGTVTNKMAPALRKVYDQMPDPKWVISMGSCANGGG 162
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R+ +
Sbjct: 163 YYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKVKRMETTQ 212
>gi|163793188|ref|ZP_02187164.1| excinuclease ABC subunit A [alpha proteobacterium BAL199]
gi|159181834|gb|EDP66346.1| excinuclease ABC subunit A [alpha proteobacterium BAL199]
Length = 179
Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats.
Identities = 123/183 (67%), Positives = 141/183 (77%), Gaps = 6/183 (3%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
MG+ + + +G + DA S +S EI KGF++ D+L WAR GSL MTF
Sbjct: 1 MGVINAERPVPAGANQ------DAILSAVSDEIREKGFVIAQADKLFNWARCGSLWPMTF 54
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMM + RYDL+RFG R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EP
Sbjct: 55 GLACCAVEMMHTAASRYDLDRFGLVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEP 114
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+KI+R
Sbjct: 115 RWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQRKIKRT 174
Query: 181 GNV 183
+
Sbjct: 175 ATI 177
>gi|255262340|ref|ZP_05341682.1| NADH-quinone oxidoreductase subunit b [Thalassiobium sp. R2A62]
gi|255104675|gb|EET47349.1| NADH-quinone oxidoreductase subunit b [Thalassiobium sp. R2A62]
Length = 177
Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 127/157 (80%), Positives = 141/157 (89%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERFG AP
Sbjct: 19 QELNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAP 78
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC
Sbjct: 79 RASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 138
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRIVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 139 DRIVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTL 175
>gi|84502605|ref|ZP_01000724.1| NADH dehydrogenase beta subunit [Oceanicola batsensis HTCC2597]
gi|84389000|gb|EAQ01798.1| NADH dehydrogenase beta subunit [Oceanicola batsensis HTCC2597]
Length = 207
Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats.
Identities = 128/181 (70%), Positives = 145/181 (80%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ T + + + + ++ E+ KGFL+TS + L+ WARTGSL WMTFGL
Sbjct: 25 VKTGPSAVAAYGPHGAGPDPEMATQALNKELQDKGFLLTSTEDLINWARTGSLHWMTFGL 84
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM SMPRYD ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 85 ACCAVEMMHTSMPRYDAERFGIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 144
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ L +KIRR G
Sbjct: 145 VVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLARKIRRTGT 204
Query: 183 V 183
+
Sbjct: 205 I 205
>gi|90417843|ref|ZP_01225755.1| NADH dehydrogenase I, B subunit [Aurantimonas manganoxydans
SI85-9A1]
gi|90337515|gb|EAS51166.1| NADH dehydrogenase I, B subunit [Aurantimonas manganoxydans
SI85-9A1]
Length = 194
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 138/193 (71%), Positives = 156/193 (80%), Gaps = 9/193 (4%)
Query: 1 MGLTTVNQKIIS---------GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51
MGL ++ +++ D + +++E+ KGFLVTS + L+ WAR
Sbjct: 1 MGLIDTSRPLVAHAPSTDAGVAGPRTVAPAADPFVTDVNNELADKGFLVTSTEDLIQWAR 60
Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
TGSLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 61 TGSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120
Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+L
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVL 180
Query: 172 LLQKKIRRVGNVK 184
LLQKKIRR G ++
Sbjct: 181 LLQKKIRRTGTIE 193
>gi|159124830|gb|EDP49948.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
fumigatus A1163]
Length = 225
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 106/166 (63%), Positives = 130/166 (78%), Gaps = 1/166 (0%)
Query: 20 EKVDADFSRISSEITHK-GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
+ F++ E K ++T+ D L+ WAR GSL ++FGLACC VEMM ASMPRYD
Sbjct: 55 PSLPTSFNQSKEENAGKLHHILTTTDSLINWARQGSLWPLSFGLACCGVEMMAASMPRYD 114
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
+R G RASPRQ+DVM+VAGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYYH+
Sbjct: 115 QDRQGIIFRASPRQADVMLVAGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYHH 174
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SYSVVRG DR+VPVDIYVPGCPPT EAL+YGIL L++KI R +
Sbjct: 175 SYSVVRGVDRLVPVDIYVPGCPPTPEALLYGILQLKRKIERTKVTR 220
>gi|328705672|ref|XP_001949063.2| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur
protein 7, mitochondrial-like isoform 1 [Acyrthosiphon
pisum]
gi|328705674|ref|XP_003242871.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur
protein 7, mitochondrial-like isoform 2 [Acyrthosiphon
pisum]
gi|239788027|dbj|BAH70710.1| ACYPI008241 [Acyrthosiphon pisum]
Length = 218
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 109/173 (63%), Positives = 133/173 (76%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ Q + EK +S + V +D ++ W R SL +TFGLACCAVEMM
Sbjct: 41 ASQDTNIEEKPYRPYSPFQKTNNMAEYAVARLDDVLNWGRKHSLWPLTFGLACCAVEMMH 100
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
+ PRYD++R+G RASPRQ+D++IVAGTLTNKMA ALRRVYDQMP+P++VISMGSCAN
Sbjct: 101 IAAPRYDMDRYGVVFRASPRQADLIIVAGTLTNKMAPALRRVYDQMPDPKWVISMGSCAN 160
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ +
Sbjct: 161 GGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGILQLQKKIKRMSLAQ 213
>gi|315499789|ref|YP_004088592.1| NADH-quinone oxidoreductase, b subunit [Asticcacaulis excentricus
CB 48]
gi|315417801|gb|ADU14441.1| NADH-quinone oxidoreductase, B subunit [Asticcacaulis excentricus
CB 48]
Length = 186
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 133/162 (82%), Positives = 148/162 (91%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D F +SSE+ KGFLV S D ++TWARTGSLMWMTFGLACCAVEMMQASMPRYD+ERF
Sbjct: 24 DKFFEAVSSELNEKGFLVASADDVITWARTGSLMWMTFGLACCAVEMMQASMPRYDMERF 83
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 84 GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVLSMGSCANGGGYYHYSYSV 143
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VRGCDRIVPVD+YVPGCPP+AEAL+YG+L LQKKIRR G ++
Sbjct: 144 VRGCDRIVPVDVYVPGCPPSAEALLYGLLQLQKKIRRNGTIR 185
>gi|186920122|ref|YP_001874776.1| NADH dehydrogenase subunit 10 [Hemiselmis andersenii]
gi|186461068|gb|ACC78230.1| NADH dehydrogenase subunit 10 [Hemiselmis andersenii]
Length = 182
Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats.
Identities = 113/149 (75%), Positives = 128/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
F+++ +D L+ WAR GSL MTFGLACCAVEMM A RYD +RFG RASPRQSD
Sbjct: 28 KTEFVISKLDDLLNWARRGSLWPMTFGLACCAVEMMHAGASRYDFDRFGIIFRASPRQSD 87
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDR+VPVDI
Sbjct: 88 VMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDI 147
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQKKI++ N+
Sbjct: 148 YVPGCPPTAEALLYGIVQLQKKIKQNKNL 176
>gi|89067783|ref|ZP_01155237.1| NADH dehydrogenase beta subunit [Oceanicola granulosus HTCC2516]
gi|89046753|gb|EAR52808.1| NADH dehydrogenase beta subunit [Oceanicola granulosus HTCC2516]
Length = 204
Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats.
Identities = 131/176 (74%), Positives = 147/176 (83%), Gaps = 1/176 (0%)
Query: 9 KIISGQSSCSLEKVDAD-FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
+++ + + E ++ E+ KGFLVTS ++ WARTGSL WMTFGLACCAV
Sbjct: 27 SVLTPYGANTAEGDKEVATQALNRELQDKGFLVTSTADIINWARTGSLHWMTFGLACCAV 86
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
EMM +SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMG
Sbjct: 87 EMMHSSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMG 146
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 147 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIRRTGTI 202
>gi|288958988|ref|YP_003449329.1| NADH dehydrogenase I chain B [Azospirillum sp. B510]
gi|288911296|dbj|BAI72785.1| NADH dehydrogenase I chain B [Azospirillum sp. B510]
Length = 188
Score = 237 bits (605), Expect = 6e-61, Method: Composition-based stats.
Identities = 122/169 (72%), Positives = 136/169 (80%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+ DA +S EI KGF++ + L+ WARTGSL MTFGLACCAVEM+ A M
Sbjct: 18 PIPPGPEQDAYIRAVSDEIQDKGFVLAKYEDLLAWARTGSLWPMTFGLACCAVEMIHAYM 77
Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
RYDL+RFG PR SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGG
Sbjct: 78 SRYDLDRFGVIPRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGG 137
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R +
Sbjct: 138 YYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIKRGNRI 186
>gi|194595689|gb|ACF77132.1| NADH dehydrogenase subunit B [Azospirillum brasilense]
Length = 180
Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats.
Identities = 122/169 (72%), Positives = 135/169 (79%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+ DA ++ EI KGF+ + ++ WARTGSL MTFGLACCAVEM+ A M
Sbjct: 10 PIPPGPEQDAYLRAVTEEIQEKGFITAKYEDVLAWARTGSLWPMTFGLACCAVEMIHAYM 69
Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
RYDL+RFG PR SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGG
Sbjct: 70 SRYDLDRFGVIPRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGG 129
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKIRR +
Sbjct: 130 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIRRGNRI 178
>gi|148259933|ref|YP_001234060.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5]
gi|326403113|ref|YP_004283194.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum
AIU301]
gi|218527971|sp|A5FX09|NUOB1_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|146401614|gb|ABQ30141.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5]
gi|325049974|dbj|BAJ80312.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum
AIU301]
Length = 186
Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats.
Identities = 127/166 (76%), Positives = 141/166 (84%)
Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
+ +A I+ EI KGF+V ++D+LV WARTGSL MTFGLACCAVEM+ A MPR+
Sbjct: 18 PGAEQEAVIRGITGEIAGKGFVVANLDRLVNWARTGSLWPMTFGLACCAVEMIHAYMPRW 77
Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
DL+RFG PR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH
Sbjct: 78 DLDRFGIIPRNSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYH 137
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI LQKKIRR G +
Sbjct: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGITQLQKKIRRTGTI 183
>gi|149914578|ref|ZP_01903108.1| NADH dehydrogenase subunit B [Roseobacter sp. AzwK-3b]
gi|149811371|gb|EDM71206.1| NADH dehydrogenase subunit B [Roseobacter sp. AzwK-3b]
Length = 177
Score = 237 bits (604), Expect = 6e-61, Method: Composition-based stats.
Identities = 130/157 (82%), Positives = 142/157 (90%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
++ E+ KGFLVTS + ++ WARTGSL WMTFGLACCAVEMM ASMPRYDLERFG AP
Sbjct: 19 QDLNRELQDKGFLVTSTEDIINWARTGSLHWMTFGLACCAVEMMHASMPRYDLERFGTAP 78
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC
Sbjct: 79 RASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 138
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRIVPVDIYVPGCPPTAEAL+YGI+ LQ+KIRR G +
Sbjct: 139 DRIVPVDIYVPGCPPTAEALVYGIMQLQRKIRRTGTI 175
>gi|15604224|ref|NP_220740.1| NADH dehydrogenase subunit B [Rickettsia prowazekii str. Madrid E]
gi|6647678|sp|Q9ZDH2|NUOB_RICPR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|3860916|emb|CAA14816.1| NADH DEHYDROGENASE I CHAIN B (nuoB) [Rickettsia prowazekii]
gi|292571965|gb|ADE29880.1| NADH dehydrogenase I chain B [Rickettsia prowazekii Rp22]
Length = 174
Score = 237 bits (604), Expect = 7e-61, Method: Composition-based stats.
Identities = 113/160 (70%), Positives = 138/160 (86%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ ++S +T++GFL++ VD++++WAR SL MTFGLACCAVEMMQA+ RYD++RFG
Sbjct: 8 EDELLNSGLTNRGFLLSKVDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGM 67
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVR
Sbjct: 68 LFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVR 127
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K
Sbjct: 128 GCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167
>gi|299471504|emb|CBN79990.1| NUO10 homolog, NADH dehydrogenase (ubiquinone) subunit 10
[Ectocarpus siliculosus]
Length = 225
Score = 237 bits (604), Expect = 7e-61, Method: Composition-based stats.
Identities = 118/172 (68%), Positives = 134/172 (77%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+S L + + + F+V+ VD LV WAR GSL MTFGLACCAVEMM
Sbjct: 48 RKPTSSELTRAENVDQLMQQGKGGVEFVVSKVDDLVNWARKGSLWPMTFGLACCAVEMMH 107
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
++ RYDLERFG RASPRQSDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCAN
Sbjct: 108 SAASRYDLERFGMVFRASPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCAN 167
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+ ++
Sbjct: 168 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSL 219
>gi|289207894|ref|YP_003459960.1| NADH-quinone oxidoreductase subunit beta [Thioalkalivibrio sp.
K90mix]
gi|288943525|gb|ADC71224.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp.
K90mix]
Length = 158
Score = 237 bits (604), Expect = 7e-61, Method: Composition-based stats.
Identities = 117/149 (78%), Positives = 128/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 EKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLVNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIRRTNTI 156
>gi|296283830|ref|ZP_06861828.1| NADH dehydrogenase subunit B [Citromicrobium bathyomarinum JL354]
Length = 192
Score = 237 bits (604), Expect = 7e-61, Method: Composition-based stats.
Identities = 126/173 (72%), Positives = 144/173 (83%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ Q + F+ + +E+ KGFLVTS ++L WARTGSL WMTFGLACCAVEM+
Sbjct: 19 AAQPGEVRQPDSDYFNALQTEVNDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIH 78
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
+MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM P+YVISMGSCAN
Sbjct: 79 VNMPRYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVISMGSCAN 138
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G V+
Sbjct: 139 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTVE 191
>gi|3342734|gb|AAC27669.1| NUKM_HUMAN, partial CDS [Homo sapiens]
Length = 158
Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats.
Identities = 114/151 (75%), Positives = 129/151 (85%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ ++V +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQS
Sbjct: 3 SRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQS 62
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 63 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 122
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IY+PGCPPTAEAL+YGIL LQ+KI+R ++
Sbjct: 123 IYIPGCPPTAEALLYGILQLQRKIKRERRLQ 153
>gi|114707368|ref|ZP_01440265.1| NADH-ubiquinone oxidoreductase chain B protein [Fulvimarina pelagi
HTCC2506]
gi|114537249|gb|EAU40376.1| NADH-ubiquinone oxidoreductase chain B protein [Fulvimarina pelagi
HTCC2506]
Length = 194
Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats.
Identities = 137/193 (70%), Positives = 155/193 (80%), Gaps = 9/193 (4%)
Query: 1 MG-LTTVNQKIISGQ--------SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWAR 51
MG + N+ +++ Q D + I+ E+ KGFLVTS D L+ WAR
Sbjct: 1 MGVIHGTNKPLLAPQTDVASVGAPGSVTAAPDPFVTAINDELADKGFLVTSTDDLIQWAR 60
Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
GSLMWMTFGLACCAVEMMQ SMPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR
Sbjct: 61 NGSLMWMTFGLACCAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALR 120
Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR++PVDIYVPGCPP+AEAL+YG++
Sbjct: 121 KVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPSAEALLYGVM 180
Query: 172 LLQKKIRRVGNVK 184
LLQKKIRR G ++
Sbjct: 181 LLQKKIRRTGTIE 193
>gi|288942133|ref|YP_003444373.1| NADH-quinone oxidoreductase subunit B [Allochromatium vinosum DSM
180]
gi|288897505|gb|ADC63341.1| NADH-quinone oxidoreductase, B subunit [Allochromatium vinosum DSM
180]
Length = 158
Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats.
Identities = 114/153 (74%), Positives = 128/153 (83%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ +G + T+ D+L+ WARTGSL MTFGLACCA+EMM A RYDL+RFG R SP
Sbjct: 4 EGLLEEGVVTTTADKLINWARTGSLWPMTFGLACCAIEMMHAGAARYDLDRFGIIFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEAL+YGIL LQ+KIRR +
Sbjct: 124 PVDVYVPGCPPTAEALLYGILQLQEKIRRTNTI 156
>gi|319408580|emb|CBI82235.1| NADH dehydrogenase I, B subunit [Bartonella schoenbuchensis R1]
Length = 176
Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats.
Identities = 137/170 (80%), Positives = 152/170 (89%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+ + D F I++E++ KGFLVTS D L+TWARTGSLMWM+FGLACCAVEMMQ SM
Sbjct: 6 AGELVSSHDKFFHDINAELSDKGFLVTSADALITWARTGSLMWMSFGLACCAVEMMQCSM 65
Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
P YD ERFG+APRASPRQSDVM+VAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGG
Sbjct: 66 PHYDNERFGYAPRASPRQSDVMVVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGG 125
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQKKIRR G+++
Sbjct: 126 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQKKIRRTGSIE 175
>gi|83592891|ref|YP_426643.1| NADH dehydrogenase subunit B [Rhodospirillum rubrum ATCC 11170]
gi|123526697|sp|Q2RU39|NUOB_RHORT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|83575805|gb|ABC22356.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum
rubrum ATCC 11170]
Length = 185
Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats.
Identities = 119/182 (65%), Positives = 141/182 (77%), Gaps = 3/182 (1%)
Query: 5 TVNQKIISGQSSCSLEKVDAD---FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
V+ +I + + +++ EI KGF++++VD LV WAR GSL MTFG
Sbjct: 2 GVSTPVIVPRGGAPVPPGPDQDLILGQVAREIEEKGFVLSNVDSLVNWARAGSLWPMTFG 61
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
LACCA+EM+ + RYDL+RFG R SPRQSDVMIVAGTLTNKMA ALR+VYDQM EPR
Sbjct: 62 LACCALEMIHCACARYDLDRFGTVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEPR 121
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EAL+YG+L LQKKI+R G
Sbjct: 122 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALLYGVLQLQKKIKRTG 181
Query: 182 NV 183
+
Sbjct: 182 AL 183
>gi|269469169|gb|EEZ80711.1| NADH dehydrogenase I chain B [uncultured SUP05 cluster bacterium]
Length = 159
Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats.
Identities = 114/153 (74%), Positives = 131/153 (85%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ + F+ TS+D+++ WARTGSL MTFGLACCAVEMM+A RYDL+RFG R +P
Sbjct: 4 EGLMKESFVTTSLDKVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIV
Sbjct: 64 RQSDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEAL+YGIL LQ KIRR +
Sbjct: 124 PVDVYVPGCPPTAEALLYGILQLQDKIRRTNTI 156
>gi|254461551|ref|ZP_05074967.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain b
[Rhodobacterales bacterium HTCC2083]
gi|206678140|gb|EDZ42627.1| NADH dehydrogenase-ubiquinone oxidoreductase, chain b
[Rhodobacteraceae bacterium HTCC2083]
Length = 181
Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats.
Identities = 132/183 (72%), Positives = 150/183 (81%), Gaps = 4/183 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
MG+ + I+ D + +++E+ KGFL+TS D ++ WARTGSL WMTF
Sbjct: 1 MGVMSGTSTGIATAGGDR----DHGTAALNAELADKGFLLTSTDDIINWARTGSLHWMTF 56
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMM SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 57 GLACCAVEMMHTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEP 116
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ+K+RR
Sbjct: 117 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQRKMRRT 176
Query: 181 GNV 183
G +
Sbjct: 177 GTI 179
>gi|91088057|ref|XP_967271.1| PREDICTED: similar to CG9172 CG9172-PA [Tribolium castaneum]
gi|270012769|gb|EFA09217.1| hypothetical protein TcasGA2_TC006185 [Tribolium castaneum]
Length = 202
Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats.
Identities = 107/176 (60%), Positives = 131/176 (74%)
Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
+ S E +S + + +D L+ W R S+ +TFGLACCAVE
Sbjct: 22 TFAQPVRNQSTEVAPRPYSPFQKTSNLAEYSLARLDDLLNWGRKSSMWPLTFGLACCAVE 81
Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
MM + PRYD++R+G RASPRQ+DV+I+AGTLTNKMA ALR+VYDQMPEPR+VISMGS
Sbjct: 82 MMHIAAPRYDMDRYGVVFRASPRQADVIIIAGTLTNKMAPALRKVYDQMPEPRWVISMGS 141
Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
CANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R ++
Sbjct: 142 CANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKVKRYNALQ 197
>gi|222148275|ref|YP_002549232.1| NADH dehydrogenase subunit B [Agrobacterium vitis S4]
gi|238065049|sp|B9JVE6|NUOB_AGRVS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|221735263|gb|ACM36226.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium vitis S4]
Length = 195
Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats.
Identities = 135/183 (73%), Positives = 151/183 (82%), Gaps = 1/183 (0%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + I+ + + F I+ E+ KGFLVTS L+TWARTGSLMWM FGL
Sbjct: 12 VAPQPKGILDPATGKPVGNDSTFFGEINDELADKGFLVTSTQALITWARTGSLMWMQFGL 71
Query: 63 ACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
ACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 72 ACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPR 131
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
YVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G
Sbjct: 132 YVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTG 191
Query: 182 NVK 184
++
Sbjct: 192 TIE 194
>gi|290562629|gb|ADD38710.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial
[Lepeophtheirus salmonis]
Length = 211
Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats.
Identities = 113/188 (60%), Positives = 137/188 (72%), Gaps = 8/188 (4%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEIT--------HKGFLVTSVDQLVTWARTGSLM 56
+ I +S + + IS + + ++V +D L+ W R SL
Sbjct: 19 ATSSSSIKDKSFPDRDALPPMEKDISGQYSPFRVDKKNKAEYVVARLDDLINWGRKTSLW 78
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
+TFGLACCAVEMM + PRYD++R+G RASPRQ+DV++VAGTLTNKMA A R+VYDQ
Sbjct: 79 PLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVILVAGTLTNKMAPAFRKVYDQ 138
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
M EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKK
Sbjct: 139 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQKK 198
Query: 177 IRRVGNVK 184
I+R+ NV+
Sbjct: 199 IKRMKNVQ 206
>gi|254436528|ref|ZP_05050022.1| NADH-quinone oxidoreductase, B subunit subfamily [Octadecabacter
antarcticus 307]
gi|198251974|gb|EDY76288.1| NADH-quinone oxidoreductase, B subunit subfamily [Octadecabacter
antarcticus 307]
Length = 177
Score = 236 bits (603), Expect = 1e-60, Method: Composition-based stats.
Identities = 132/161 (81%), Positives = 141/161 (87%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D ++ E+T KGFLVTS L+ WARTGSL WMTFGLACCAVEMM SMPRYD ERF
Sbjct: 15 DVATQDLNHELTDKGFLVTSSADLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERF 74
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 75 GIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 134
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 135 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 175
>gi|302383046|ref|YP_003818869.1| NADH-quinone oxidoreductase subunit beta [Brevundimonas
subvibrioides ATCC 15264]
gi|302193674|gb|ADL01246.1| NADH-quinone oxidoreductase, B subunit [Brevundimonas subvibrioides
ATCC 15264]
Length = 193
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 131/161 (81%), Positives = 145/161 (90%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D F +++EI +GFL S+D ++ WARTGSLMWMTFGLACCAVEM+QASMPRYDLERF
Sbjct: 31 DKFFEAVNTEIAEQGFLTASLDDVINWARTGSLMWMTFGLACCAVEMIQASMPRYDLERF 90
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 91 GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVLSMGSCANGGGYYHYSYSV 150
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VRGCDRIVPVD YVPGCPPTAEALIYG+L LQKKIRR G +
Sbjct: 151 VRGCDRIVPVDAYVPGCPPTAEALIYGLLQLQKKIRRTGTI 191
>gi|218528070|sp|Q2NA61|NUOB_ERYLH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
Length = 187
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 124/165 (75%), Positives = 142/165 (86%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ F+ + +E+ KGFLVTS + L WARTGSL WMTFGLACCAVEM+ +MPRYD+
Sbjct: 22 QPDGDYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDM 81
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMGSCANGGGYYHYS
Sbjct: 82 ERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMGSCANGGGYYHYS 141
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++
Sbjct: 142 YSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRSGTIE 186
>gi|307206424|gb|EFN84462.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial [Harpegnathos saltator]
Length = 224
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 114/180 (63%), Positives = 135/180 (75%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
+ + + +S + + + VD L+ W R GSL MTFGLAC
Sbjct: 40 ATESSVQETKFPLPEKPKVEPYSPFQNTNNMAEYALARVDDLLNWGRKGSLWPMTFGLAC 99
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSD +IVAGTLTNKMASALR++YDQMPEPR+VI
Sbjct: 100 CAVEMMHIAAPRYDMDRFGVVFRASPRQSDCIIVAGTLTNKMASALRKIYDQMPEPRWVI 159
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKKI+R+ NV+
Sbjct: 160 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGVLQLQKKIKRMQNVQ 219
>gi|149202673|ref|ZP_01879645.1| NADH dehydrogenase subunit B [Roseovarius sp. TM1035]
gi|149143955|gb|EDM31989.1| NADH dehydrogenase subunit B [Roseovarius sp. TM1035]
Length = 177
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 129/157 (82%), Positives = 143/157 (91%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+++E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +MPRYD+ERFGFAP
Sbjct: 19 QALNAELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDVERFGFAP 78
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC
Sbjct: 79 RASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 138
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 139 DRIVPVDIYVPGCPPTAEALVYGILQLQRKIRRTGTI 175
>gi|254450431|ref|ZP_05063868.1| NADH dehydrogenase i, b subunit [Octadecabacter antarcticus 238]
gi|198264837|gb|EDY89107.1| NADH dehydrogenase i, b subunit [Octadecabacter antarcticus 238]
Length = 184
Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats.
Identities = 132/161 (81%), Positives = 141/161 (87%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D ++ E+T KGFLVTS L+ WARTGSL WMTFGLACCAVEMM SMPRYD ERF
Sbjct: 22 DVATQDLNKELTDKGFLVTSSADLINWARTGSLHWMTFGLACCAVEMMHTSMPRYDAERF 81
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 82 GIAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 141
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 142 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 182
>gi|114569906|ref|YP_756586.1| NADH dehydrogenase subunit B [Maricaulis maris MCS10]
gi|122316124|sp|Q0APY9|NUOB_MARMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|114340368|gb|ABI65648.1| NADH dehydrogenase subunit B [Maricaulis maris MCS10]
Length = 188
Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats.
Identities = 139/170 (81%), Positives = 150/170 (88%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+K D F +S + KGF+V + D LVTWARTGSLMWMTFGLACCAVEMMQASM
Sbjct: 18 PGYDPKKHDPFFDGVSDALADKGFVVAAADDLVTWARTGSLMWMTFGLACCAVEMMQASM 77
Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
PRYD+ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGG
Sbjct: 78 PRYDVERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGG 137
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKIRR G+++
Sbjct: 138 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIRREGSIE 187
>gi|409251|gb|AAA03036.1| NADH dehydrogenase [Paracoccus denitrificans]
Length = 174
Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats.
Identities = 128/161 (79%), Positives = 143/161 (88%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D + ++ E+ KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMMQ SMPRYDLERF
Sbjct: 12 DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERF 71
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 72 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G +
Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTL 172
>gi|167536644|ref|XP_001749993.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771503|gb|EDQ85168.1| predicted protein [Monosiga brevicollis MX1]
Length = 218
Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats.
Identities = 114/181 (62%), Positives = 135/181 (74%), Gaps = 6/181 (3%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
T K+ A+ + + + +D LV WAR GS+ MTFGLA
Sbjct: 39 QTTPSSAAVPAPVFGKSKIPANIDNRAD------YALAKLDDLVNWARKGSMWPMTFGLA 92
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+V
Sbjct: 93 CCAVEMMHVAAPRYDMDRFGIVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWV 152
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPT+EAL+YG+L LQKKI+R ++
Sbjct: 153 VSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTSEALLYGLLQLQKKIKRDRSL 212
Query: 184 K 184
+
Sbjct: 213 Q 213
>gi|126727142|ref|ZP_01742979.1| NADH dehydrogenase subunit B [Rhodobacterales bacterium HTCC2150]
gi|126703570|gb|EBA02666.1| NADH dehydrogenase subunit B [Rhodobacterales bacterium HTCC2150]
Length = 176
Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats.
Identities = 123/155 (79%), Positives = 141/155 (90%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
++ E+ KGFL+TS + ++ WARTGSL WMTFGLACCAVEMM +MPRYD+ERFG APRA
Sbjct: 20 LNRELQDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDMERFGTAPRA 79
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 80 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVLSMGSCANGGGYYHYSYSVVRGCDR 139
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+VPVD+YVPGCPPTAEAL+YG+L LQ+KIRR G +
Sbjct: 140 VVPVDMYVPGCPPTAEALLYGLLQLQRKIRRTGTI 174
>gi|158455101|gb|AAI53838.1| NDUFS7 protein [Bos taurus]
Length = 179
Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats.
Identities = 117/173 (67%), Positives = 139/173 (80%), Gaps = 1/173 (0%)
Query: 13 GQSSCSLEKVDADFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ ++ + A + ++ + +G ++V +D L+ WAR SL MTFGLACCAVEMM
Sbjct: 2 PSTQPAVSQARAVVPKPAALPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMH 61
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
+ PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCAN
Sbjct: 62 MAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCAN 121
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+R ++
Sbjct: 122 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLR 174
>gi|307168025|gb|EFN61349.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial [Camponotus floridanus]
Length = 222
Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats.
Identities = 112/180 (62%), Positives = 134/180 (74%), Gaps = 1/180 (0%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
+ + + +S + + VD L+ W R GS+ MTFGLAC
Sbjct: 39 ATESSVQKAKPPLPEKAKVEPYSPFRPN-NMAEYALARVDDLLNWGRKGSIWPMTFGLAC 97
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDV+IVAGTLTNKMA ALR++YDQMPEPR+VI
Sbjct: 98 CAVEMMHIAAPRYDMDRFGVVFRASPRQSDVIIVAGTLTNKMAPALRKIYDQMPEPRWVI 157
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ +++
Sbjct: 158 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQKKIKRMQSIQ 217
>gi|66512193|ref|XP_392437.2| PREDICTED: probable NADH dehydrogenase [ubiquinone] iron-sulfur
protein 7, mitochondrial [Apis mellifera]
Length = 223
Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats.
Identities = 110/173 (63%), Positives = 136/173 (78%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ +SS + +S + + V +D ++ W R GS+ +TFGLACCAVEMM
Sbjct: 46 TSESSLPEKAKKIPYSPFQNTNNLAEYAVARLDDILNWGRKGSIWPLTFGLACCAVEMMH 105
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
+ PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCAN
Sbjct: 106 IAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCAN 165
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ ++
Sbjct: 166 GGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKIKRMKTLQ 218
>gi|296420699|ref|XP_002839906.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636113|emb|CAZ84097.1| unnamed protein product [Tuber melanosporum]
Length = 213
Score = 236 bits (601), Expect = 1e-60, Method: Composition-based stats.
Identities = 118/179 (65%), Positives = 142/179 (79%), Gaps = 3/179 (1%)
Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACC 65
++ + S S+++ + + S++ KG +++TS+DQ+ WAR GSL MTFGLACC
Sbjct: 30 TSLAPRDSSSIDRSNRREVLLPSQVPKKGVMQYVLTSLDQVANWARQGSLWPMTFGLACC 89
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
AVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+V+S
Sbjct: 90 AVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVVS 149
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
MGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGIL LQKK+R +
Sbjct: 150 MGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGILQLQKKMRNTKITR 208
>gi|260428201|ref|ZP_05782180.1| NADH-quinone oxidoreductase subunit b [Citreicella sp. SE45]
gi|260422693|gb|EEX15944.1| NADH-quinone oxidoreductase subunit b [Citreicella sp. SE45]
Length = 175
Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 130/157 (82%), Positives = 143/157 (91%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
++ E+ KGFL+TSVD ++ WARTGSL WMTFGLACCA+EMMQ SMPRYDLERFG AP
Sbjct: 17 QALNRELQDKGFLLTSVDDVINWARTGSLHWMTFGLACCAIEMMQTSMPRYDLERFGTAP 76
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC
Sbjct: 77 RASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 136
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRIVPVD+YVPGCPPTAEAL+YGI+ LQKKIRR G +
Sbjct: 137 DRIVPVDVYVPGCPPTAEALLYGIMALQKKIRRTGTI 173
>gi|310816715|ref|YP_003964679.1| NADH-quinone oxidoreductase, B subunit [Ketogulonicigenium vulgare
Y25]
gi|308755450|gb|ADO43379.1| NADH-quinone oxidoreductase, B subunit [Ketogulonicigenium vulgare
Y25]
Length = 188
Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 133/186 (71%), Positives = 150/186 (80%), Gaps = 3/186 (1%)
Query: 1 MGLTTVNQKIISG-QSSCSLEKVDADFSRI--SSEITHKGFLVTSVDQLVTWARTGSLMW 57
M L ++ Q+ + DAD + + + KGFLVTS ++ WARTGSL W
Sbjct: 1 MELNQLSTGAQGSVQTGRNSAGADADHAALVLGRAVQDKGFLVTSTADIINWARTGSLHW 60
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
MTFGLACCAVEMMQ SMPRYDLERFG APRASPRQ+D+MIVAGTLTNKMA ALR+VYDQM
Sbjct: 61 MTFGLACCAVEMMQLSMPRYDLERFGTAPRASPRQADLMIVAGTLTNKMAPALRKVYDQM 120
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGI+ LQ+KI
Sbjct: 121 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMQLQRKI 180
Query: 178 RRVGNV 183
RR G +
Sbjct: 181 RRTGTI 186
>gi|84686428|ref|ZP_01014322.1| NADH dehydrogenase beta subunit [Maritimibacter alkaliphilus
HTCC2654]
gi|84665611|gb|EAQ12087.1| NADH dehydrogenase beta subunit [Rhodobacterales bacterium
HTCC2654]
Length = 174
Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 127/156 (81%), Positives = 144/156 (92%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
++S E+ KGFL+T+ D ++ WARTGSL WMTFGLACCAVEMMQ+SMPRYDLER+G APR
Sbjct: 17 QLSDELQDKGFLLTTTDDIINWARTGSLHWMTFGLACCAVEMMQSSMPRYDLERYGTAPR 76
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
ASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD
Sbjct: 77 ASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 136
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
R+VPVD+YVPGCPP+AEAL+YGIL LQ+KIRR G +
Sbjct: 137 RVVPVDVYVPGCPPSAEALVYGILQLQRKIRRTGTI 172
>gi|326433088|gb|EGD78658.1| NDUFS7 protein [Salpingoeca sp. ATCC 50818]
Length = 214
Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats.
Identities = 111/147 (75%), Positives = 128/147 (87%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+ + +D LV WAR S+ MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMI
Sbjct: 63 YALAKLDDLVNWARKSSMWPMTFGLACCAVEMMHVAAPRYDMDRFGIVFRASPRQSDVMI 122
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVP
Sbjct: 123 VAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVP 182
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GCPPTAEAL+YG+L LQKKI+R +++
Sbjct: 183 GCPPTAEALLYGLLQLQKKIKRDKSLQ 209
>gi|332375552|gb|AEE62917.1| unknown [Dendroctonus ponderosae]
Length = 227
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 112/186 (60%), Positives = 137/186 (73%), Gaps = 3/186 (1%)
Query: 2 GLTTVNQKIISGQSSCSLE---KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58
T V + ++ S E + +S + + + +D L+ W R GS+ +
Sbjct: 37 STTQVRDQSTQPATASSTEVAAQKRKPYSPFQNTNNVAEYALARLDDLLNWGRKGSVWPL 96
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMM + PRYD++R+G RASPRQ+D +IVAGTLTNKMA ALR+VYDQMP
Sbjct: 97 TFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADCIIVAGTLTNKMAPALRKVYDQMP 156
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
EPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKKI+
Sbjct: 157 EPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKIK 216
Query: 179 RVGNVK 184
R V+
Sbjct: 217 RYNTVQ 222
>gi|119384981|ref|YP_916037.1| NADH dehydrogenase subunit B [Paracoccus denitrificans PD1222]
gi|218527939|sp|A1B497|NUOB_PARDP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NADH
dehydrogenase I, subunit 6; AltName: Full=NADH-quinone
oxidoreductase subunit 6; Short=NQO6; AltName:
Full=NDH-1 subunit B; AltName: Full=NDH-1, subunit 6
gi|119374748|gb|ABL70341.1| NADH dehydrogenase subunit B [Paracoccus denitrificans PD1222]
Length = 175
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 128/161 (79%), Positives = 143/161 (88%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D + ++ E+ KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMMQ SMPRYDLERF
Sbjct: 13 DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERF 72
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 73 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 132
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++IRR G +
Sbjct: 133 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTL 173
>gi|103486796|ref|YP_616357.1| NADH dehydrogenase subunit B [Sphingopyxis alaskensis RB2256]
gi|122985072|sp|Q1GTJ8|NUOB_SPHAL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|98976873|gb|ABF53024.1| NADH-quinone oxidoreductase, B subunit [Sphingopyxis alaskensis
RB2256]
Length = 177
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 126/169 (74%), Positives = 141/169 (83%)
Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
+ + F +S E+ KGFLVTS + L WARTGSL WMTFGLACCAVEM+ +MP
Sbjct: 8 APGTNPDQSFFDDLSGEVGDKGFLVTSTEDLFNWARTGSLWWMTFGLACCAVEMIHVNMP 67
Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
RYD+ERFG APRASPRQSDVMIVAGTL NKMA ALRRVYDQM P+YVISMGSCANGGGY
Sbjct: 68 RYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRRVYDQMSNPKYVISMGSCANGGGY 127
Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++
Sbjct: 128 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRTGTIE 176
>gi|85703212|ref|ZP_01034316.1| NADH dehydrogenase beta subunit [Roseovarius sp. 217]
gi|85672140|gb|EAQ26997.1| NADH dehydrogenase beta subunit [Roseovarius sp. 217]
Length = 174
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 128/157 (81%), Positives = 143/157 (91%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+++E+ KG+L+TS + ++ WARTGSL WMTFGLACCAVEMM +MPRYD+ERFGFAP
Sbjct: 16 QALNAELQDKGYLLTSTEDIINWARTGSLHWMTFGLACCAVEMMHTAMPRYDVERFGFAP 75
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC
Sbjct: 76 RASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 135
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRIVPVDIYVPGCPPTAEAL+YGIL LQ+KIRR G +
Sbjct: 136 DRIVPVDIYVPGCPPTAEALVYGILQLQRKIRRTGTI 172
>gi|195385751|ref|XP_002051568.1| GJ16291 [Drosophila virilis]
gi|194148025|gb|EDW63723.1| GJ16291 [Drosophila virilis]
Length = 209
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 112/145 (77%), Positives = 127/145 (87%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
VT +D L+ W R GSL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DV+IVA
Sbjct: 60 VTRLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQTDVIIVA 119
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC
Sbjct: 120 GTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 179
Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
PPTAEAL+Y IL LQKKI+R+ ++
Sbjct: 180 PPTAEALLYAILQLQKKIKRMRTLQ 204
>gi|87200316|ref|YP_497573.1| NADH dehydrogenase subunit B [Novosphingobium aromaticivorans DSM
12444]
gi|123488910|sp|Q2G5Y4|NUOB_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|87135997|gb|ABD26739.1| NADH dehydrogenase subunit B [Novosphingobium aromaticivorans DSM
12444]
Length = 181
Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats.
Identities = 125/179 (69%), Positives = 146/179 (81%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+++ A F +++E+ KGFLVTS ++L WARTGSL WMTFGLACC
Sbjct: 2 TASPLVTADQGAVAAPDQAFFDSLNAEVNDKGFLVTSTEELFQWARTGSLWWMTFGLACC 61
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
AVEM+ +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVIS
Sbjct: 62 AVEMIHVNMPRYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVIS 121
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++
Sbjct: 122 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGTLE 180
>gi|320167168|gb|EFW44067.1| NADH2 dehydrogenase subunit 22K [Capsaspora owczarzaki ATCC 30864]
Length = 206
Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats.
Identities = 118/181 (65%), Positives = 139/181 (76%), Gaps = 2/181 (1%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
T + + + Q+ + + + F + F ++ +D LV W RTGS+ MTFGLA
Sbjct: 23 TAPSAAVATQQT--VFKPIKSSFPASLAPANQAEFALSKLDALVNWGRTGSVWPMTFGLA 80
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMMQA+ RYD +RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+V
Sbjct: 81 CCAVEMMQAAAARYDFDRFGIVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWV 140
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
ISMGSCANGGGYYHYSY+VVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI+R
Sbjct: 141 ISMGSCANGGGYYHYSYAVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQKKIKRSNQA 200
Query: 184 K 184
+
Sbjct: 201 Q 201
>gi|332185849|ref|ZP_08387596.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas sp. S17]
gi|332014207|gb|EGI56265.1| NADH-quinone oxidoreductase, B subunit [Sphingomonas sp. S17]
Length = 194
Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats.
Identities = 126/168 (75%), Positives = 144/168 (85%)
Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
++ F ++ E+T KGFLVTS ++L WARTGSL WMTFGLACCAVEM+ +MPR
Sbjct: 26 AVIQPDQGFFDGLNGELTDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPR 85
Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
YD+ERFG APRASPRQSDVMIVAGTL NKMA ALRRVYDQM P+YVISMGSCANGGGYY
Sbjct: 86 YDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRRVYDQMSNPKYVISMGSCANGGGYY 145
Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
HYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G+++
Sbjct: 146 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGSIE 193
>gi|218463554|ref|ZP_03503645.1| NADH dehydrogenase subunit B [Rhizobium etli Kim 5]
Length = 186
Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats.
Identities = 137/182 (75%), Positives = 154/182 (84%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
LT + + Q + D I++E+ KGFLVTS D+L+TWARTGSLMWMTFGL
Sbjct: 4 LTQPHSAPANFQFPGEQRQGDPMMGTINAELADKGFLVTSTDELITWARTGSLMWMTFGL 63
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCA+EMMQ SMPRYD+ERFG APR SPRQSD+MIVAGTL NKMA ALR+VYDQMPEPRY
Sbjct: 64 ACCAIEMMQMSMPRYDIERFGVAPRGSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRY 123
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGILLLQ+KIRR G+
Sbjct: 124 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILLLQRKIRRNGS 183
Query: 183 VK 184
++
Sbjct: 184 IE 185
>gi|114052144|ref|NP_001040456.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Bombyx mori]
gi|95102968|gb|ABF51425.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Bombyx mori]
Length = 210
Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats.
Identities = 116/181 (64%), Positives = 133/181 (73%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
T V +I +S V +D L+ W R GSL MTFGLA
Sbjct: 25 TPVVSQIRDTHLPAPNPTEKRPYSPFQDASNMAEMAVARLDDLLNWGRKGSLWPMTFGLA 84
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM + PRYD++R+G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+V
Sbjct: 85 CCAVEMMHIAAPRYDMDRYGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPDPRWV 144
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+R+ +
Sbjct: 145 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKIKRMKTI 204
Query: 184 K 184
+
Sbjct: 205 Q 205
>gi|195117025|ref|XP_002003051.1| GI24498 [Drosophila mojavensis]
gi|193913626|gb|EDW12493.1| GI24498 [Drosophila mojavensis]
Length = 205
Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 110/149 (73%), Positives = 129/149 (86%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
+ VT +D L+ W R GS+ MTFGLACCAVEMM + PRYD++RFG RASPRQ+D+
Sbjct: 52 GEWAVTRLDDLLNWGRKGSVWPMTFGLACCAVEMMHIAGPRYDMDRFGVVFRASPRQTDL 111
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
+IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIY
Sbjct: 112 IIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIY 171
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VPGCPPTAEAL+YGIL LQKKI+R+ ++
Sbjct: 172 VPGCPPTAEALLYGILQLQKKIKRMRTLQ 200
>gi|153875120|ref|ZP_02003055.1| NADH-quinone oxidoreductase, B subunit [Beggiatoa sp. PS]
gi|152068417|gb|EDN66946.1| NADH-quinone oxidoreductase, B subunit [Beggiatoa sp. PS]
Length = 160
Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 117/153 (76%), Positives = 130/153 (84%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
I +GF+ T+ D+L+ WARTGS+ MTFGLACCAVEMMQA RYDL+RFG R SP
Sbjct: 4 EGILQEGFVTTTADRLINWARTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMIVAGTLTNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDVMIVAGTLTNKMAPALRKVYDQMPNPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVDIY+PGCPPTAEAL+YGIL LQ KI+R +
Sbjct: 124 PVDIYIPGCPPTAEALLYGILQLQNKIKRTNTI 156
>gi|149184638|ref|ZP_01862956.1| NADH dehydrogenase subunit B [Erythrobacter sp. SD-21]
gi|148831958|gb|EDL50391.1| NADH dehydrogenase subunit B [Erythrobacter sp. SD-21]
Length = 168
Score = 235 bits (599), Expect = 3e-60, Method: Composition-based stats.
Identities = 126/165 (76%), Positives = 143/165 (86%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ F+ + +E+ KGFLVTS + L WARTGSL WMTFGLACCAVEM+ +MPRYD+
Sbjct: 3 KPDADYFNALQTEVNDKGFLVTSTEDLFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDM 62
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM EP+YVISMGSCANGGGYYHYS
Sbjct: 63 ERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSEPKYVISMGSCANGGGYYHYS 122
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRRVG ++
Sbjct: 123 YSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRVGTIE 167
>gi|195024283|ref|XP_001985843.1| GH21035 [Drosophila grimshawi]
gi|193901843|gb|EDW00710.1| GH21035 [Drosophila grimshawi]
Length = 226
Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats.
Identities = 106/155 (68%), Positives = 131/155 (84%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
+ + + + + +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RAS
Sbjct: 67 TKQSSMAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRAS 126
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 127 PRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 186
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PVDIYVPGCPPTAEAL+YG+L LQKK++R+ ++
Sbjct: 187 IPVDIYVPGCPPTAEALLYGVLQLQKKVKRMKTLQ 221
>gi|225712904|gb|ACO12298.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
[Lepeophtheirus salmonis]
Length = 211
Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats.
Identities = 112/188 (59%), Positives = 136/188 (72%), Gaps = 8/188 (4%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEIT--------HKGFLVTSVDQLVTWARTGSLM 56
+ I +S + + IS + + ++V +D L+ W R SL
Sbjct: 19 ATSSSSIKDKSFPDRDALPPMEKDISGQYSPFRVDKKNKAEYVVARLDDLINWGRKTSLW 78
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
+TFGLA CAVEMM + PRYD++R+G RASPRQ+DV++VAGTLTNKMA A R+VYDQ
Sbjct: 79 PLTFGLAYCAVEMMHIAAPRYDMDRYGVVFRASPRQADVILVAGTLTNKMAPAFRKVYDQ 138
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
M EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKK
Sbjct: 139 MLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQKK 198
Query: 177 IRRVGNVK 184
I+R+ NV+
Sbjct: 199 IKRMKNVQ 206
>gi|147818797|emb|CAN67285.1| hypothetical protein VITISV_021597 [Vitis vinifera]
Length = 209
Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats.
Identities = 115/179 (64%), Positives = 132/179 (73%), Gaps = 1/179 (0%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHK-GFLVTSVDQLVTWARTGSLMWMTFGL 62
TT+ + + S + ++ F+++ VD L+ WAR GS+ MTFGL
Sbjct: 23 TTLPSLSSESAAPAPYSRAPPPSSTSPAGLSKAAEFVISKVDDLLNWARRGSIWPMTFGL 82
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+
Sbjct: 83 ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRW 142
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R
Sbjct: 143 VVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRK 201
>gi|126736072|ref|ZP_01751816.1| NADH dehydrogenase beta subunit [Roseobacter sp. CCS2]
gi|126714629|gb|EBA11496.1| NADH dehydrogenase beta subunit [Roseobacter sp. CCS2]
Length = 176
Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats.
Identities = 135/183 (73%), Positives = 147/183 (80%), Gaps = 9/183 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
MG+ T + L I+SE+ KGFLVTS +V WARTGSL WMTF
Sbjct: 1 MGVMTGTSVGADKEHGAQL---------INSELQDKGFLVTSTADIVNWARTGSLHWMTF 51
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMM SMPRYDLERFG APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 52 GLACCAVEMMHTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEP 111
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR
Sbjct: 112 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQRKMRRT 171
Query: 181 GNV 183
G +
Sbjct: 172 GTI 174
>gi|119501352|ref|XP_001267433.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya
fischeri NRRL 181]
gi|119415598|gb|EAW25536.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya
fischeri NRRL 181]
Length = 228
Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats.
Identities = 118/183 (64%), Positives = 138/183 (75%), Gaps = 2/183 (1%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFG 61
T + ++ SGQ + KV + S E +++T++DQ+ WAR SL MTFG
Sbjct: 41 TALERQAQSGQPLTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R
Sbjct: 161 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 220
Query: 182 NVK 184
+
Sbjct: 221 ITR 223
>gi|225429464|ref|XP_002277483.1| PREDICTED: hypothetical protein [Vitis vinifera]
Length = 209
Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats.
Identities = 115/179 (64%), Positives = 132/179 (73%), Gaps = 1/179 (0%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHK-GFLVTSVDQLVTWARTGSLMWMTFGL 62
TT+ + + S + ++ F+++ VD L+ WAR GS+ MTFGL
Sbjct: 23 TTLPSLSSESAAPAPYSRAPPPSSTSPAGLSKAAEFVISKVDDLLNWARRGSIWPMTFGL 82
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+
Sbjct: 83 ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRW 142
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R
Sbjct: 143 VVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRK 201
>gi|270158113|ref|ZP_06186770.1| NADH-quinone oxidoreductase B subunit [Legionella longbeachae
D-4968]
gi|289163622|ref|YP_003453760.1| NADH dehydrogenase I chain B [Legionella longbeachae NSW150]
gi|269990138|gb|EEZ96392.1| NADH-quinone oxidoreductase B subunit [Legionella longbeachae
D-4968]
gi|288856795|emb|CBJ10606.1| NADH dehydrogenase I chain B [Legionella longbeachae NSW150]
Length = 158
Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats.
Identities = 115/153 (75%), Positives = 130/153 (84%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
E+ GF+ TSV++LV WAR+GS+ MTFGLACCAVEMM A RYDL+RFG R SPR
Sbjct: 5 ELQKSGFVTTSVEKLVGWARSGSMWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSPR 64
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
QSDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65 QSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVP 124
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VD+YVPGCPPTAEAL+YGI+ LQ KIR ++
Sbjct: 125 VDVYVPGCPPTAEALLYGIIQLQNKIRHKKILE 157
>gi|299751278|ref|XP_002911618.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coprinopsis cinerea
okayama7#130]
gi|298409301|gb|EFI28124.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coprinopsis cinerea
okayama7#130]
Length = 223
Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats.
Identities = 111/179 (62%), Positives = 136/179 (75%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
+ S Q ++ K ++ + + ++++++D++ WAR GS+ MTFGLA
Sbjct: 38 AAQPESATSTQPYTAIAKQGSNQLSLETPQNKAEYVLSTLDKVANWARQGSMWPMTFGLA 97
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM + RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+V
Sbjct: 98 CCAVEMMHMAAARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWV 157
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR
Sbjct: 158 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRRSRK 216
>gi|84516742|ref|ZP_01004100.1| NADH dehydrogenase beta subunit [Loktanella vestfoldensis SKA53]
gi|84509210|gb|EAQ05669.1| NADH dehydrogenase beta subunit [Loktanella vestfoldensis SKA53]
Length = 173
Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats.
Identities = 129/155 (83%), Positives = 141/155 (90%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+++E+ KGFLVTS ++ WARTGSL WMTFGLACCAVEMM SMPRYDLERFG APRA
Sbjct: 17 LNAELQDKGFLVTSTADVINWARTGSLHWMTFGLACCAVEMMHTSMPRYDLERFGTAPRA 76
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 77 SPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 136
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
IVPVDIYVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 137 IVPVDIYVPGCPPTAEALLYGILQLQRKMRRTGTI 171
>gi|195033324|ref|XP_001988662.1| GH11286 [Drosophila grimshawi]
gi|193904662|gb|EDW03529.1| GH11286 [Drosophila grimshawi]
Length = 209
Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats.
Identities = 113/154 (73%), Positives = 132/154 (85%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+++ + VT +D L+ W R GS+ MTFGLACCAVEMM + PRYD++RFG RASP
Sbjct: 51 NQLGWGEWTVTRLDDLLNWGRKGSIWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASP 110
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 111 RQTDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 170
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
PVDIYVPGCPPTAEAL+YGIL LQKKI+R+ ++
Sbjct: 171 PVDIYVPGCPPTAEALMYGILQLQKKIKRMRTLQ 204
>gi|220934163|ref|YP_002513062.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp.
HL-EbGR7]
gi|238065221|sp|B8GNY6|NUOB_THISH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|219995473|gb|ACL72075.1| NADH-quinone oxidoreductase, B subunit [Thioalkalivibrio sp.
HL-EbGR7]
Length = 158
Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats.
Identities = 118/149 (79%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 EKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVDI
Sbjct: 68 VMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGIL LQ KIRR +
Sbjct: 128 YVPGCPPTAEALLYGILQLQNKIRRTNTI 156
>gi|110225660|ref|YP_665666.1| NADH dehydrogenase subunit 10 [Nephroselmis olivacea]
gi|6066175|gb|AAF03193.1|AF110138_25 NADH dehydrogenase subunit 10 [Nephroselmis olivacea]
Length = 158
Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats.
Identities = 115/149 (77%), Positives = 127/149 (85%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ FL+T +D L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQS
Sbjct: 3 NNAEFLLTGIDSLLNWARKGSMWPMTFGLACCAVEMMHCGASRYDLDRFGIIFRPSPRQS 62
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 63 DVMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 122
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGN 182
IYVPGCPPTAEAL+YG+L LQKKI+R N
Sbjct: 123 IYVPGCPPTAEALLYGLLQLQKKIQRTNN 151
>gi|21243431|ref|NP_643013.1| NADH dehydrogenase subunit B [Xanthomonas axonopodis pv. citri str.
306]
gi|21108984|gb|AAM37549.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas axonopodis
pv. citri str. 306]
Length = 191
Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats.
Identities = 119/184 (64%), Positives = 140/184 (76%), Gaps = 3/184 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + T++ + + +E + + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 8 MGVIQTLDSLMTNPMPEGRVEDILRPEGE--NPLLEKGYVTTSVDALLNWARTGSMWPMT 65
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 66 FGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 125
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 126 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 185
Query: 180 VGNV 183
+
Sbjct: 186 TQTI 189
>gi|115400845|ref|XP_001216011.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial
precursor [Aspergillus terreus NIH2624]
gi|114191677|gb|EAU33377.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial
precursor [Aspergillus terreus NIH2624]
Length = 307
Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats.
Identities = 117/183 (63%), Positives = 139/183 (75%), Gaps = 2/183 (1%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFG 61
T + ++ +GQS + KV + S E +++T++DQ+ WAR SL MTFG
Sbjct: 120 TALERQGQTGQSLTASGKVRKEVPLASQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 179
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 180 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 239
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R
Sbjct: 240 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 299
Query: 182 NVK 184
+
Sbjct: 300 ITR 302
>gi|134079540|emb|CAK97016.1| unnamed protein product [Aspergillus niger]
Length = 219
Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats.
Identities = 110/175 (62%), Positives = 129/175 (73%)
Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
S Q S S + ++T+ DQ+V WAR GSL ++FGLACCA+EM
Sbjct: 40 ATSQQDQGSAPPPSTALSAERRPMNMAEHVLTTFDQIVNWARQGSLWPLSFGLACCAIEM 99
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
M SMPRYD +R G RASPRQSDVMIVAGT+TNKMA ALR+ YDQMPEPR+VISMGSC
Sbjct: 100 MHVSMPRYDQDRLGIIFRASPRQSDVMIVAGTVTNKMAPALRQCYDQMPEPRWVISMGSC 159
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
ANGGGYYHYSYS+VRG DRIVPVD+Y+PGCPPTAEA +YG+ LQKKI+R +
Sbjct: 160 ANGGGYYHYSYSIVRGVDRIVPVDVYIPGCPPTAEATLYGVFQLQKKIKRTRITR 214
>gi|329850728|ref|ZP_08265573.1| NADH-quinone oxidoreductase subunit B [Asticcacaulis biprosthecum
C19]
gi|328841043|gb|EGF90614.1| NADH-quinone oxidoreductase subunit B [Asticcacaulis biprosthecum
C19]
Length = 184
Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats.
Identities = 133/162 (82%), Positives = 149/162 (91%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D F +S+E+ KGFLV S D ++TWARTGSLMWMTFGLACCAVEMMQASMPRYD+ERF
Sbjct: 22 DKFFESVSAELDAKGFLVASADDVITWARTGSLMWMTFGLACCAVEMMQASMPRYDMERF 81
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 82 GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPDPRYVLSMGSCANGGGYYHYSYSV 141
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VRGCDRIVPVD+YVPGCPP+AEAL+YG+L LQKKIRR GN++
Sbjct: 142 VRGCDRIVPVDVYVPGCPPSAEALLYGLLQLQKKIRRTGNIR 183
>gi|70994922|ref|XP_752238.1| NADH-ubiquinone oxidoreductase subunit B [Aspergillus fumigatus
Af293]
gi|66849872|gb|EAL90200.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
fumigatus Af293]
gi|159124846|gb|EDP49963.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
fumigatus A1163]
Length = 223
Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats.
Identities = 118/183 (64%), Positives = 137/183 (74%), Gaps = 2/183 (1%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFG 61
T + + SGQ + KV + S E +++T++DQ+ WAR SL MTFG
Sbjct: 36 TALEHQAQSGQPLTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 95
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 96 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 155
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R
Sbjct: 156 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 215
Query: 182 NVK 184
+
Sbjct: 216 ITR 218
>gi|58582858|ref|YP_201874.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84624723|ref|YP_452095.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|166712613|ref|ZP_02243820.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|58427452|gb|AAW76489.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|84368663|dbj|BAE69821.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas oryzae pv.
oryzae MAFF 311018]
Length = 191
Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats.
Identities = 119/184 (64%), Positives = 141/184 (76%), Gaps = 3/184 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + T+++ + + +E + + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 8 MGVIQTLDRLMTNPMPEGRVEDILRPEGE--NPLLEKGYVTTSVDALLNWARTGSMWPMT 65
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 66 FGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 125
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 126 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 185
Query: 180 VGNV 183
+
Sbjct: 186 TQTI 189
>gi|51473550|ref|YP_067307.1| NADH dehydrogenase subunit B [Rickettsia typhi str. Wilmington]
gi|81390150|sp|Q68X17|NUOB_RICTY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|51459862|gb|AAU03825.1| NADH dehydrogenase (ubiquinone) subunit B [Rickettsia typhi str.
Wilmington]
Length = 171
Score = 234 bits (597), Expect = 5e-60, Method: Composition-based stats.
Identities = 112/160 (70%), Positives = 138/160 (86%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ ++S +T++GFL++ +D++++WAR SL MTFGLACCAVEMMQA+ RYD++RFG
Sbjct: 8 EDELLNSCLTNRGFLLSKIDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGM 67
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R SPRQSD+MIVAGTLTNKMA ALR+VYDQM EP++V+SMGSCANGGGYYH+SYSVVR
Sbjct: 68 LFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVR 127
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDRIVPVD+YVPGCPPTAEALIYG++ LQKKI+R K
Sbjct: 128 GCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFK 167
>gi|319787442|ref|YP_004146917.1| NADH-quinone oxidoreductase subunit beta [Pseudoxanthomonas
suwonensis 11-1]
gi|317465954|gb|ADV27686.1| NADH-quinone oxidoreductase, B subunit [Pseudoxanthomonas
suwonensis 11-1]
Length = 192
Score = 234 bits (596), Expect = 5e-60, Method: Composition-based stats.
Identities = 121/184 (65%), Positives = 141/184 (76%), Gaps = 3/184 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + T+++ + + +E + + + KG++ TSVD LV WARTGS+ MT
Sbjct: 1 MGVIQTIDRLMTNPMPEARVEDILRPAGE--NPLLEKGYVTTSVDALVNWARTGSMWPMT 58
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59 FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 178
Query: 180 VGNV 183
V
Sbjct: 179 TQTV 182
>gi|302679558|ref|XP_003029461.1| hypothetical protein SCHCODRAFT_69693 [Schizophyllum commune H4-8]
gi|300103151|gb|EFI94558.1| hypothetical protein SCHCODRAFT_69693 [Schizophyllum commune H4-8]
Length = 236
Score = 234 bits (596), Expect = 5e-60, Method: Composition-based stats.
Identities = 107/177 (60%), Positives = 133/177 (75%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+ GQS ++ ++ + + +++ + D++ WAR S+ +TFGLACC
Sbjct: 53 PAATVEKGQSFRAVVNAQSNQHSLETPQNKAEYVLATFDKIANWARQSSMWPVTFGLACC 112
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
AVEMM + RYD +R G RASPRQS++MIVAGTLTNKMA ALR+VYDQMPEPR+V+S
Sbjct: 113 AVEMMHMAAARYDQDRLGIIFRASPRQSEIMIVAGTLTNKMAPALRKVYDQMPEPRWVVS 172
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR
Sbjct: 173 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRRSRK 229
>gi|321466001|gb|EFX76999.1| hypothetical protein DAPPUDRAFT_54753 [Daphnia pulex]
Length = 167
Score = 234 bits (596), Expect = 5e-60, Method: Composition-based stats.
Identities = 110/161 (68%), Positives = 131/161 (81%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+S + + V +D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G
Sbjct: 2 RPYSPFQNTNNMAEYAVARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYG 61
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
RASPRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVV
Sbjct: 62 VVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVV 121
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
RGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKK++R+ ++
Sbjct: 122 RGCDRIIPVDIYVPGCPPTAEALMYGILQLQKKVKRMKTIQ 162
>gi|325921410|ref|ZP_08183267.1| NADH dehydrogenase subunit B [Xanthomonas gardneri ATCC 19865]
gi|325548168|gb|EGD19165.1| NADH dehydrogenase subunit B [Xanthomonas gardneri ATCC 19865]
Length = 184
Score = 234 bits (596), Expect = 6e-60, Method: Composition-based stats.
Identities = 119/184 (64%), Positives = 141/184 (76%), Gaps = 3/184 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + T+++ + + L+ + + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 1 MGVIQTLDRLMTNPMPEGRLDDILRPEGE--NPLLEKGYVTTSVDALLNWARTGSMWPMT 58
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59 FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 178
Query: 180 VGNV 183
+
Sbjct: 179 TQTI 182
>gi|21231959|ref|NP_637876.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767914|ref|YP_242676.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris
str. 8004]
gi|188991030|ref|YP_001903040.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. campestris
str. B100]
gi|21113690|gb|AAM41800.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|66573246|gb|AAY48656.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris
pv. campestris str. 8004]
gi|167732790|emb|CAP50984.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris
pv. campestris]
Length = 191
Score = 234 bits (596), Expect = 6e-60, Method: Composition-based stats.
Identities = 119/184 (64%), Positives = 141/184 (76%), Gaps = 3/184 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + T+++ + + +E + + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 8 MGVIQTLDRLMTNPMPEGRVEDILRPEGE--NPLLEKGYVTTSVDALLNWARTGSMWPMT 65
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 66 FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 125
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 126 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 185
Query: 180 VGNV 183
+
Sbjct: 186 TQTI 189
>gi|78048408|ref|YP_364583.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|294624677|ref|ZP_06703347.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294666776|ref|ZP_06732010.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325924676|ref|ZP_08186114.1| NADH dehydrogenase subunit B [Xanthomonas perforans 91-118]
gi|123584672|sp|Q3BRN0|NUOB_XANC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065262|sp|Q8PJ41|NUOB_XANAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|78036838|emb|CAJ24531.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|292601033|gb|EFF45100.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292603437|gb|EFF46854.1| NADH dehydrogenase beta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325544882|gb|EGD16227.1| NADH dehydrogenase subunit B [Xanthomonas perforans 91-118]
Length = 184
Score = 234 bits (596), Expect = 6e-60, Method: Composition-based stats.
Identities = 119/184 (64%), Positives = 140/184 (76%), Gaps = 3/184 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + T++ + + +E + + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 1 MGVIQTLDSLMTNPMPEGRVEDILRPEGE--NPLLEKGYVTTSVDALLNWARTGSMWPMT 58
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59 FGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 178
Query: 180 VGNV 183
+
Sbjct: 179 TQTI 182
>gi|28198172|ref|NP_778486.1| NADH dehydrogenase subunit B [Xylella fastidiosa Temecula1]
gi|28056242|gb|AAO28135.1| NADH-ubiquinone oxidoreductase NQO6 subunit [Xylella fastidiosa
Temecula1]
Length = 191
Score = 234 bits (596), Expect = 6e-60, Method: Composition-based stats.
Identities = 116/184 (63%), Positives = 139/184 (75%), Gaps = 3/184 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + +++ + + ++ + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 8 MGVIQAIDRLMTNPIPDGQVDDILRPQGESP--LLQKGYVTTSVDALLNWARTGSMWPMT 65
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 66 FGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 125
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 126 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWR 185
Query: 180 VGNV 183
+
Sbjct: 186 TKTI 189
>gi|259482901|tpe|CBF77819.1| TPA: NADH-ubiquinone oxidoreductase subunit B, putative
(AFU_orthologue; AFUA_4G05860) [Aspergillus nidulans
FGSC A4]
Length = 228
Score = 234 bits (596), Expect = 6e-60, Method: Composition-based stats.
Identities = 117/183 (63%), Positives = 139/183 (75%), Gaps = 2/183 (1%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFG 61
T + ++ +GQS + +V + S E +++T++DQ+ WAR SL MTFG
Sbjct: 41 TALERQGNAGQSLTASGQVRREVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 100
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 101 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 160
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R
Sbjct: 161 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 220
Query: 182 NVK 184
+
Sbjct: 221 ITR 223
>gi|312116344|ref|YP_004013940.1| NADH-quinone oxidoreductase subunit beta [Rhodomicrobium vannielii
ATCC 17100]
gi|311221473|gb|ADP72841.1| NADH-quinone oxidoreductase, B subunit [Rhodomicrobium vannielii
ATCC 17100]
Length = 184
Score = 234 bits (596), Expect = 6e-60, Method: Composition-based stats.
Identities = 128/172 (74%), Positives = 147/172 (85%)
Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
DF +++++ KGFLVTS + ++ WARTGSLMWMTFGLACCAVEM+Q
Sbjct: 12 DTPGRPGAGAAVDFDGLNAQLADKGFLVTSTEDVINWARTGSLMWMTFGLACCAVEMIQV 71
Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
SMPRYDLERFG APRASPRQSD+MIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANG
Sbjct: 72 SMPRYDLERFGTAPRASPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRYVISMGSCANG 131
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GGYYHYSYSVVRGCDR+VPVD+Y+PGCPP+AEAL+YGI+LLQKKIRR G ++
Sbjct: 132 GGYYHYSYSVVRGCDRVVPVDVYIPGCPPSAEALLYGIMLLQKKIRRTGTIE 183
>gi|260574759|ref|ZP_05842762.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sp. SW2]
gi|259023176|gb|EEW26469.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sp. SW2]
Length = 177
Score = 234 bits (596), Expect = 6e-60, Method: Composition-based stats.
Identities = 127/157 (80%), Positives = 143/157 (91%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
++ E++ KGFL+TS + ++ WARTGSL WMTFGLACCAVEM+Q SMPRYDLERFG AP
Sbjct: 19 DALNRELSDKGFLLTSTEDIINWARTGSLHWMTFGLACCAVEMIQLSMPRYDLERFGTAP 78
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC
Sbjct: 79 RASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 138
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRIVPVD+YVPGCPPTAEAL+YGIL LQ+K+RR G +
Sbjct: 139 DRIVPVDVYVPGCPPTAEALLYGILQLQRKMRRTGTI 175
>gi|224007275|ref|XP_002292597.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971459|gb|EED89793.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 216
Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats.
Identities = 120/179 (67%), Positives = 137/179 (76%), Gaps = 2/179 (1%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISS--EITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
++ + S L+ VD + + V+ VD LV WAR GSL MTFGLAC
Sbjct: 32 DKASSTTSSLTRLDGVDELLTGTGGVPTSNKVEYAVSRVDDLVNWARKGSLWPMTFGLAC 91
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM A+ RYD+ERFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+V+
Sbjct: 92 CAVEMMHAAASRYDMERFGMVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVV 151
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+ ++
Sbjct: 152 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKGNKSL 210
>gi|254420093|ref|ZP_05033817.1| NADH-quinone oxidoreductase, B subunit subfamily [Brevundimonas sp.
BAL3]
gi|196186270|gb|EDX81246.1| NADH-quinone oxidoreductase, B subunit subfamily [Brevundimonas sp.
BAL3]
Length = 173
Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats.
Identities = 123/161 (76%), Positives = 143/161 (88%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D F ++ E+ +GFL S+D ++TWARTGSLMWMTFGLACCAVEM+Q SMPR+D+ERF
Sbjct: 11 DKFFESVNMELGERGFLTASLDDVITWARTGSLMWMTFGLACCAVEMIQMSMPRFDVERF 70
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APR SPR SD+MIVAGTLTNKMA A+R+VYDQMP+PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 71 GMAPRGSPRHSDLMIVAGTLTNKMAPAIRKVYDQMPDPRYVVSMGSCANGGGYYHYSYSV 130
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VRGCDR+VPVD+YVPGCPPTAEAL+YG+L LQKKIRR G +
Sbjct: 131 VRGCDRVVPVDVYVPGCPPTAEALLYGLLQLQKKIRRTGTI 171
>gi|289665174|ref|ZP_06486755.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289667379|ref|ZP_06488454.1| NADH dehydrogenase subunit B [Xanthomonas campestris pv. musacearum
NCPPB4381]
gi|238065260|sp|Q5GXT2|NUOB_XANOR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065261|sp|Q2P0V6|NUOB_XANOM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
Length = 184
Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats.
Identities = 119/184 (64%), Positives = 141/184 (76%), Gaps = 3/184 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + T+++ + + +E + + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 1 MGVIQTLDRLMTNPMPEGRVEDILRPEGE--NPLLEKGYVTTSVDALLNWARTGSMWPMT 58
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59 FGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 178
Query: 180 VGNV 183
+
Sbjct: 179 TQTI 182
>gi|304322207|ref|YP_003855850.1| NADH dehydrogenase subunit beta [Parvularcula bermudensis HTCC2503]
gi|303301109|gb|ADM10708.1| NADH dehydrogenase beta subunit [Parvularcula bermudensis HTCC2503]
Length = 226
Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats.
Identities = 128/162 (79%), Positives = 144/162 (88%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D F+ ++ E+ +GF+ D ++ WARTGSLMWMTFGLACCAVEMMQASMPRYD+ERF
Sbjct: 64 DPFFTSLNRELADQGFITAPADAVINWARTGSLMWMTFGLACCAVEMMQASMPRYDMERF 123
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMP PRYV+SMGSCANGGGYYHYSYSV
Sbjct: 124 GMAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPAPRYVVSMGSCANGGGYYHYSYSV 183
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VRGCDRIVPVDIYVPGCPPTAEALIYG+L LQKK+RR G ++
Sbjct: 184 VRGCDRIVPVDIYVPGCPPTAEALIYGLLQLQKKMRREGTIR 225
>gi|78485163|ref|YP_391088.1| NADH dehydrogenase subunit B [Thiomicrospira crunogena XCL-2]
gi|123555687|sp|Q31HF9|NUOB_THICR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|78363449|gb|ABB41414.1| NADH dehydrogenase I chain B [Thiomicrospira crunogena XCL-2]
Length = 158
Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+G + TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 KEGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIKRTNTI 156
>gi|83858414|ref|ZP_00951936.1| NADH dehydrogenase beta subunit [Oceanicaulis alexandrii HTCC2633]
gi|83853237|gb|EAP91089.1| NADH dehydrogenase beta subunit [Oceanicaulis alexandrii HTCC2633]
Length = 187
Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats.
Identities = 135/182 (74%), Positives = 149/182 (81%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + +K D F +S + KGFLV + D L+TWARTGSLMWMTFGL
Sbjct: 5 IVPAGSAATAKTPHYDPKKHDPFFDGVSDALADKGFLVAAADDLITWARTGSLMWMTFGL 64
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMMQASMPRYD+ER G APR SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRY
Sbjct: 65 ACCAVEMMQASMPRYDVERLGAAPRGSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRY 124
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVP+DIYVPGCPPTAEAL+YGIL LQKKIRR G+
Sbjct: 125 VISMGSCANGGGYYHYSYSVVRGCDRIVPIDIYVPGCPPTAEALVYGILQLQKKIRREGS 184
Query: 183 VK 184
++
Sbjct: 185 IE 186
>gi|88608136|ref|YP_506317.1| NADH dehydrogenase I, B subunit [Neorickettsia sennetsu str.
Miyayama]
gi|123491986|sp|Q2GDX9|NUOB_NEOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|88600305|gb|ABD45773.1| NADH dehydrogenase I, B subunit [Neorickettsia sennetsu str.
Miyayama]
Length = 167
Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats.
Identities = 116/152 (76%), Positives = 129/152 (84%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
S ++ G+LV +D L+ WAR+GSL MTFGLACCAVEMM + RYD++RFG R SP
Sbjct: 12 SNVSSDGYLVAKLDDLINWARSGSLWPMTFGLACCAVEMMHFTASRYDMDRFGMIFRPSP 71
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 72 RQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 131
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
PVD+YVPGCPPTAEAL+YG+L LQKKI R N
Sbjct: 132 PVDVYVPGCPPTAEALLYGVLCLQKKINRQRN 163
>gi|326387461|ref|ZP_08209070.1| NADH dehydrogenase subunit B [Novosphingobium nitrogenifigens DSM
19370]
gi|326208117|gb|EGD58925.1| NADH dehydrogenase subunit B [Novosphingobium nitrogenifigens DSM
19370]
Length = 183
Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats.
Identities = 126/169 (74%), Positives = 146/169 (86%)
Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
+ L A F +++E++ KGFLVTS ++L WARTGSL WMTFGLACCAVEM+ +MP
Sbjct: 14 ANVLAPDQAFFDSLNAEVSDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMP 73
Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
RYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM +P+YVISMGSCANGGGY
Sbjct: 74 RYDMERFGVAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSDPKYVISMGSCANGGGY 133
Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR G ++
Sbjct: 134 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRAGTLE 182
>gi|261856549|ref|YP_003263832.1| NADH-quinone oxidoreductase subunit beta [Halothiobacillus
neapolitanus c2]
gi|261837018|gb|ACX96785.1| NADH-quinone oxidoreductase, B subunit [Halothiobacillus
neapolitanus c2]
Length = 159
Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats.
Identities = 117/149 (78%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 EKGFVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVDI
Sbjct: 68 VMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIRRTNTI 156
>gi|121706424|ref|XP_001271474.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
clavatus NRRL 1]
gi|119399622|gb|EAW10048.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
clavatus NRRL 1]
Length = 225
Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats.
Identities = 118/183 (64%), Positives = 136/183 (74%), Gaps = 2/183 (1%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFG 61
T + + SGQ KV + S E +++T++DQ+ WAR SL MTFG
Sbjct: 38 TALEHRSQSGQPLTVSGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 97
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 98 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 157
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R
Sbjct: 158 WVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 217
Query: 182 NVK 184
+
Sbjct: 218 ITR 220
>gi|2499328|sp|Q43844|NDUS7_SOLTU RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit,
mitochondrial; AltName: Full=Complex I-20 kDa;
Short=CI-20kD; Flags: Precursor
gi|1235607|emb|CAA65451.1| NADH-ubiquinone oxidoreductase [Solanum tuberosum]
Length = 213
Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats.
Identities = 114/172 (66%), Positives = 131/172 (76%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + S + + ++++ VD L+ WAR GS+ MTFGLACCAVEMM
Sbjct: 36 ASSPATSGGAQPPSMNTPAGISKPAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMH 95
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
A RYD +RFG R SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCAN
Sbjct: 96 AGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCAN 155
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R ++
Sbjct: 156 GGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKINRRKDL 207
>gi|294677055|ref|YP_003577670.1| NADH-quinone oxidoreductase subunit B [Rhodobacter capsulatus SB
1003]
gi|6647658|sp|O84970|NUOB_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|3282560|gb|AAC24986.1| NUOB [Rhodobacter capsulatus]
gi|294475875|gb|ADE85263.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter capsulatus SB
1003]
Length = 177
Score = 233 bits (594), Expect = 8e-60, Method: Composition-based stats.
Identities = 124/155 (80%), Positives = 141/155 (90%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
++ ++ KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMM +MPRYD+ER+GFAPRA
Sbjct: 21 LNRDLQDKGFLLTTAEDIINWARNGSLHWMTFGLACCAVEMMHTAMPRYDVERYGFAPRA 80
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR
Sbjct: 81 SPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 140
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
IVPVDIYVPGCPP+AEAL+YGIL LQ+KIRR G +
Sbjct: 141 IVPVDIYVPGCPPSAEALMYGILQLQRKIRRTGTL 175
>gi|218528065|sp|Q4UWB7|NUOB_XANC8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528066|sp|B0RR99|NUOB_XANCB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528067|sp|Q8P7T3|NUOB_XANCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
Length = 184
Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats.
Identities = 119/184 (64%), Positives = 141/184 (76%), Gaps = 3/184 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + T+++ + + +E + + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 1 MGVIQTLDRLMTNPMPEGRVEDILRPEGE--NPLLEKGYVTTSVDALLNWARTGSMWPMT 58
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59 FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWR 178
Query: 180 VGNV 183
+
Sbjct: 179 TQTI 182
>gi|194763060|ref|XP_001963652.1| GF19983 [Drosophila ananassae]
gi|190629311|gb|EDV44728.1| GF19983 [Drosophila ananassae]
Length = 217
Score = 233 bits (594), Expect = 9e-60, Method: Composition-based stats.
Identities = 109/187 (58%), Positives = 143/187 (76%), Gaps = 6/187 (3%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSLMW 57
+ +N + Q++ ++ K + + + + + + + +D L+ W R GS+
Sbjct: 26 SALNSIWVRNQNTLTIAKTSEEIPKKGYSPFGNKQASAAEWSLARLDDLLNWGRKGSIWP 85
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
+TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYDQM
Sbjct: 86 LTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQM 145
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
PEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK+
Sbjct: 146 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKV 205
Query: 178 RRVGNVK 184
+R+ ++
Sbjct: 206 KRMKTLQ 212
>gi|182680806|ref|YP_001828966.1| NADH dehydrogenase subunit B [Xylella fastidiosa M23]
gi|238065246|sp|B2I785|NUOB_XYLF2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065259|sp|Q87EQ4|NUOB_XYLFT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|182630916|gb|ACB91692.1| NADH-quinone oxidoreductase, B subunit [Xylella fastidiosa M23]
gi|307579274|gb|ADN63243.1| NADH dehydrogenase subunit B [Xylella fastidiosa subsp. fastidiosa
GB514]
Length = 184
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 116/184 (63%), Positives = 139/184 (75%), Gaps = 3/184 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + +++ + + ++ + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 1 MGVIQAIDRLMTNPIPDGQVDDILRPQGESP--LLQKGYVTTSVDALLNWARTGSMWPMT 58
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59 FGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWR 178
Query: 180 VGNV 183
+
Sbjct: 179 TKTI 182
>gi|209964549|ref|YP_002297464.1| NADH-quinone oxidoreductase chain B [Rhodospirillum centenum SW]
gi|238065202|sp|B6ISY0|NUOB_RHOCS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|209958015|gb|ACI98651.1| NADH-quinone oxidoreductase chain B [Rhodospirillum centenum SW]
Length = 194
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 119/182 (65%), Positives = 136/182 (74%)
Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
+ + ++ S DA + E+ KG+LV D L+ WARTGSL MTFG
Sbjct: 10 SVQGPSSQVPSSAPIPPGPVQDAYLQAVQQEMQDKGYLVARFDALMDWARTGSLWPMTFG 69
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
LACCAVEM+ A M RYDL+RFG PR SPRQSDVMIVAGT+ NKMA ALR+VYDQM EPR
Sbjct: 70 LACCAVEMIHAYMARYDLDRFGVIPRPSPRQSDVMIVAGTVCNKMAPALRKVYDQMAEPR 129
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVPGCPPTAEAL+YG+L LQKKI+
Sbjct: 130 WVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVPGCPPTAEALVYGVLQLQKKIKNGN 189
Query: 182 NV 183
+
Sbjct: 190 RL 191
>gi|195429519|ref|XP_002062806.1| GK19502 [Drosophila willistoni]
gi|194158891|gb|EDW73792.1| GK19502 [Drosophila willistoni]
Length = 213
Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats.
Identities = 110/149 (73%), Positives = 128/149 (85%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
+ V +D L+ W R GSL MTFGLACCAVEMM + PRYD++RFG RASPRQ+DV
Sbjct: 60 GEWTVARLDDLINWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQTDV 119
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
+IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIY
Sbjct: 120 IIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIY 179
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VPGCPPTAEAL+YGIL LQKK++R+ ++
Sbjct: 180 VPGCPPTAEALMYGILQLQKKVKRMKTLQ 208
>gi|307293269|ref|ZP_07573115.1| NADH-quinone oxidoreductase, B subunit [Sphingobium
chlorophenolicum L-1]
gi|306881335|gb|EFN12551.1| NADH-quinone oxidoreductase, B subunit [Sphingobium
chlorophenolicum L-1]
Length = 184
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 129/188 (68%), Positives = 150/188 (79%), Gaps = 9/188 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLE----KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLM 56
MG+ ++ L F+ ++SE++ KGFLVTS ++L WARTGSL
Sbjct: 1 MGV-----ELERPAPGTLLPAGTQPDQDFFNALNSEVSDKGFLVTSTEELFQWARTGSLW 55
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
WMTFGLACCAVEM+ +MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQ
Sbjct: 56 WMTFGLACCAVEMIHVNMPRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQ 115
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
M P+YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+K
Sbjct: 116 MSNPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRK 175
Query: 177 IRRVGNVK 184
IRR+G V+
Sbjct: 176 IRRIGTVE 183
>gi|119497569|ref|XP_001265543.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya
fischeri NRRL 181]
gi|119413705|gb|EAW23646.1| NADH-ubiquinone oxidoreductase subunit B, putative [Neosartorya
fischeri NRRL 181]
Length = 226
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 109/191 (57%), Positives = 134/191 (70%), Gaps = 10/191 (5%)
Query: 4 TTVNQKIISGQSSCSLEK---------VDADFSRISSEITHK-GFLVTSVDQLVTWARTG 53
T K++ Q S + F++ E K ++T+ D L+ WAR G
Sbjct: 31 TRPRAKVLRFQLRASSSWQKHTVTNSSLPTSFNQSKEENAGKLHHILTTTDSLINWARQG 90
Query: 54 SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
S + FGLACC VEMM ASMPRYD +R G RASPRQ+DVMIV+GT+TNKMA ALR++
Sbjct: 91 SFWPLAFGLACCGVEMMAASMPRYDQDRQGIIFRASPRQADVMIVSGTVTNKMAPALRQL 150
Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
YDQMP+P++VISMGSCANGGGYYH+SYSVVRG DR+VPVDIYVPGCPPT EAL+YGIL L
Sbjct: 151 YDQMPDPKWVISMGSCANGGGYYHHSYSVVRGVDRLVPVDIYVPGCPPTPEALLYGILQL 210
Query: 174 QKKIRRVGNVK 184
++KI R +
Sbjct: 211 KRKIERTKVTR 221
>gi|325915540|ref|ZP_08177851.1| NADH dehydrogenase subunit B [Xanthomonas vesicatoria ATCC 35937]
gi|325538256|gb|EGD09941.1| NADH dehydrogenase subunit B [Xanthomonas vesicatoria ATCC 35937]
Length = 182
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 117/181 (64%), Positives = 139/181 (76%), Gaps = 2/181 (1%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ T+++ + + +E + + + KG++ TSVD L+ WARTGS+ MTFGL
Sbjct: 2 IQTLDRLMTNPMPEGRVEDILRPDGE--NPLLEKGYVTTSVDALLNWARTGSMWPMTFGL 59
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P++
Sbjct: 60 ACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKW 119
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 120 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQT 179
Query: 183 V 183
+
Sbjct: 180 I 180
>gi|188577695|ref|YP_001914624.1| NADH dehydrogenase subunit B [Xanthomonas oryzae pv. oryzae PXO99A]
gi|238065244|sp|B2SVL8|NUOB_XANOP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|188522147|gb|ACD60092.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Xanthomonas oryzae
pv. oryzae PXO99A]
Length = 182
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 117/181 (64%), Positives = 139/181 (76%), Gaps = 2/181 (1%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ T+++ + + +E + + + KG++ TSVD L+ WARTGS+ MTFGL
Sbjct: 2 IQTLDRLMTNPMPEGRVEDILRPEGE--NPLLEKGYVTTSVDALLNWARTGSMWPMTFGL 59
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P++
Sbjct: 60 ACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKW 119
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 120 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQT 179
Query: 183 V 183
+
Sbjct: 180 I 180
>gi|300311096|ref|YP_003775188.1| NADH dehydrogenase I subunit B [Herbaspirillum seropedicae SmR1]
gi|300073881|gb|ADJ63280.1| NADH dehydrogenase I (Chain B) oxidoreductase protein
[Herbaspirillum seropedicae SmR1]
Length = 158
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 111/149 (74%), Positives = 128/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
++GF+ TS+D+++ W RTGSL MTFGLACCAVEMM RYDL+RFG R SPRQSD
Sbjct: 8 NEGFVTTSLDKVINWTRTGSLWPMTFGLACCAVEMMHVGASRYDLDRFGAVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 LMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGVIQLQNKIKRTNTI 156
>gi|18859983|ref|NP_573097.1| CG9172, isoform A [Drosophila melanogaster]
gi|24642371|ref|NP_727921.1| CG9172, isoform B [Drosophila melanogaster]
gi|7293168|gb|AAF48552.1| CG9172, isoform A [Drosophila melanogaster]
gi|16769444|gb|AAL28941.1| LD31474p [Drosophila melanogaster]
gi|22832322|gb|AAN09378.1| CG9172, isoform B [Drosophila melanogaster]
gi|220944268|gb|ACL84677.1| CG9172-PA [synthetic construct]
gi|220954204|gb|ACL89645.1| CG9172-PA [synthetic construct]
Length = 221
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 110/188 (58%), Positives = 143/188 (76%), Gaps = 6/188 (3%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSLM 56
L +N ++ Q + + +V + + + + + + + +D L+ W R GS+
Sbjct: 29 LPALNLALVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSIW 88
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
+TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYDQ
Sbjct: 89 PLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQ 148
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
MPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK
Sbjct: 149 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKK 208
Query: 177 IRRVGNVK 184
++R+ ++
Sbjct: 209 VKRMKTLQ 216
>gi|88812975|ref|ZP_01128218.1| NADH dehydrogenase beta subunit [Nitrococcus mobilis Nb-231]
gi|88789753|gb|EAR20877.1| NADH dehydrogenase beta subunit [Nitrococcus mobilis Nb-231]
Length = 158
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 113/149 (75%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+G + TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 ERGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALRRVYDQM +P++VISMGSCANGGGYYHYSY+VVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLVNKMAPALRRVYDQMADPKWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL++GI+ LQKKIRR +
Sbjct: 128 YVPGCPPTAEALLFGIIQLQKKIRRTNTI 156
>gi|296136705|ref|YP_003643947.1| hypothetical protein Tint_2267 [Thiomonas intermedia K12]
gi|294340860|emb|CAZ89255.1| NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain
6) (NDH-1 subunit 6) [Thiomonas sp. 3As]
gi|295796827|gb|ADG31617.1| hypothetical protein Tint_2267 [Thiomonas intermedia K12]
Length = 158
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 112/149 (75%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ TS D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 QEGFITTSADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 LMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALLYGLIQLQNKIRRTETI 156
>gi|212528728|ref|XP_002144521.1| NADH-ubiquinone oxidoreductase subunit B, putative [Penicillium
marneffei ATCC 18224]
gi|210073919|gb|EEA28006.1| NADH-ubiquinone oxidoreductase subunit B, putative [Penicillium
marneffei ATCC 18224]
Length = 225
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 119/186 (63%), Positives = 139/186 (74%), Gaps = 2/186 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWM 58
M +T + +++ S S + KV + S E + +T++DQ+ WAR SL M
Sbjct: 35 MPVTAIERQLESSSSLTASGKVRREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPM 94
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 95 TFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMP 154
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R
Sbjct: 155 DPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMR 214
Query: 179 RVGNVK 184
+
Sbjct: 215 HTKITR 220
>gi|52842986|ref|YP_096785.1| NADH dehydrogenase subunit B [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54295617|ref|YP_128032.1| NADH dehydrogenase subunit B [Legionella pneumophila str. Lens]
gi|54298771|ref|YP_125140.1| NADH dehydrogenase subunit B [Legionella pneumophila str. Paris]
gi|296108431|ref|YP_003620132.1| NADH dehydrogenase I chain B [Legionella pneumophila 2300/99 Alcoy]
gi|81376641|sp|Q5ZRT9|NUOB_LEGPH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81601171|sp|Q5WT21|NUOB_LEGPL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81601638|sp|Q5X1A8|NUOB_LEGPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|52630097|gb|AAU28838.1| NADH dehydrogenase I, B subunit [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53752556|emb|CAH13988.1| NADH dehydrogenase I chain B [Legionella pneumophila str. Paris]
gi|53755449|emb|CAH16945.1| NADH dehydrogenase I chain B [Legionella pneumophila str. Lens]
gi|295650333|gb|ADG26180.1| NADH dehydrogenase I chain B [Legionella pneumophila 2300/99 Alcoy]
Length = 158
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 116/153 (75%), Positives = 131/153 (85%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
E+ KGF +T+V++LV WAR+GS+ MTFGLACCAVEMM RYDL+RFG R SPR
Sbjct: 5 ELEKKGFELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPR 64
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
QSDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65 QSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VD+YVPGCPPTAEAL+YGI+ LQ KIRR ++
Sbjct: 125 VDVYVPGCPPTAEALLYGIIQLQNKIRRKPVLE 157
>gi|71897767|ref|ZP_00679993.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
Ann-1]
gi|71732322|gb|EAO34376.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
Ann-1]
Length = 184
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 116/184 (63%), Positives = 139/184 (75%), Gaps = 3/184 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + +++ + + ++ + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 1 MGVIQAIDRLMTNPIPDGHVDDILRPQGESP--LLQKGYVTTSVDALLNWARTGSMWPMT 58
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59 FGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWR 178
Query: 180 VGNV 183
+
Sbjct: 179 TQTI 182
>gi|291231230|ref|XP_002735571.1| PREDICTED: NADH dehydrogenase iron-sulfur protein 7,
mitochondrial-like [Saccoglossus kowalevskii]
Length = 220
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 112/154 (72%), Positives = 126/154 (81%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
S + ++VT +D L WAR S+ MTFGLACCAVEMM + PRYD++RFG RAS
Sbjct: 61 SQKKNVGEYVVTGLDHLANWARRSSIWPMTFGLACCAVEMMHMAAPRYDMDRFGIVFRAS 120
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRG DR+
Sbjct: 121 PRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGVDRV 180
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVDIYVPGCPPTAEAL+YG L LQKKI+R +
Sbjct: 181 VPVDIYVPGCPPTAEALLYGFLQLQKKIKRQRMI 214
>gi|304382881|ref|ZP_07365364.1| NADH-quinone oxidoreductase subunit B [Prevotella marshii DSM
16973]
gi|304336066|gb|EFM02313.1| NADH-quinone oxidoreductase subunit B [Prevotella marshii DSM
16973]
Length = 207
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 81/184 (44%), Positives = 117/184 (63%), Gaps = 7/184 (3%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58
MG+ N K I + K + +I+ E+ G ++ ++D L+ W R+ SL +
Sbjct: 1 MGMKKPNIKSIPYKEF----KDNESLEKIAQELHEGGTNVVLGTLDDLINWGRSNSLWSL 56
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
TF +CC +E M RYD RFGF R SPRQ+D+++ AGT+TNKMA +R+YD+M
Sbjct: 57 TFATSCCGIEFMSVGCARYDFARFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEM 116
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP+YVI++G CA GG + SY VVRG + IVPVD+Y+PGCPP EA++YG++ LQ+KI
Sbjct: 117 AEPKYVIAVGGCAISGGPFKSSYHVVRGINEIVPVDVYIPGCPPRPEAILYGMMQLQRKI 176
Query: 178 RRVG 181
+
Sbjct: 177 KVEK 180
>gi|56421890|ref|YP_149208.1| NADH dehydrogenase subunit B [Geobacillus kaustophilus HTA426]
gi|261420760|ref|YP_003254442.1| NADH dehydrogenase subunit B [Geobacillus sp. Y412MC61]
gi|297531555|ref|YP_003672830.1| NADH-quinone oxidoreductase subunit beta [Geobacillus sp. C56-T3]
gi|319768430|ref|YP_004133931.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC52]
gi|81346274|sp|Q5KUJ6|NUOB_GEOKA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|56381732|dbj|BAD77640.1| NADH:ubiquinone oxidoreductase chain B (Fe-S oxidoreductases)
[Geobacillus kaustophilus HTA426]
gi|261377217|gb|ACX79960.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC61]
gi|297254807|gb|ADI28253.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. C56-T3]
gi|317113296|gb|ADU95788.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y412MC52]
Length = 170
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 93/158 (58%), Positives = 116/158 (73%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
FS + E + +T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG
Sbjct: 8 FSGVEMEEVKRNVFLTTLEQLKGWARSSSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSF 67
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RASPRQ+DVMIV+GT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G
Sbjct: 68 FRASPRQADVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKG 127
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
D+IVPVD+Y+PGCPP ALIYGI L++KIR
Sbjct: 128 VDQIVPVDVYIPGCPPNPAALIYGIHKLKEKIRLEAKT 165
>gi|224088884|ref|XP_002308574.1| predicted protein [Populus trichocarpa]
gi|118481270|gb|ABK92582.1| unknown [Populus trichocarpa]
gi|222854550|gb|EEE92097.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 117/178 (65%), Positives = 131/178 (73%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
TT+ + S ++ F+++ VD L+ WARTGS+ MTFGLA
Sbjct: 28 TTLPSLSPEPTPAPYTRAPPPSSSSLTGLSKPAEFVISKVDSLMNWARTGSIWPMTFGLA 87
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+V
Sbjct: 88 CCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWV 147
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R
Sbjct: 148 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIHRRK 205
>gi|71275689|ref|ZP_00651974.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
Dixon]
gi|71897855|ref|ZP_00680081.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
Ann-1]
gi|170729490|ref|YP_001774923.1| NADH dehydrogenase subunit B [Xylella fastidiosa M12]
gi|254767800|sp|B0U1W6|NUOB_XYLFM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|71163580|gb|EAO13297.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
Dixon]
gi|71732410|gb|EAO34464.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Xylella fastidiosa
Ann-1]
gi|167964283|gb|ACA11293.1| NADH dehydrogenase [Xylella fastidiosa M12]
Length = 184
Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats.
Identities = 116/184 (63%), Positives = 139/184 (75%), Gaps = 3/184 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + +++ + + ++ + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 1 MGVIQAIDRLMTNPIPDGQVDDILRPQGESP--LLQKGYVTTSVDALLNWARTGSMWPMT 58
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59 FGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWR 178
Query: 180 VGNV 183
+
Sbjct: 179 TQTI 182
>gi|15239782|ref|NP_196738.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
[Arabidopsis thaliana]
gi|2499327|sp|Q42577|NDUS7_ARATH RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit,
mitochondrial; AltName: Full=Complex I-20kD;
Short=CI-20kD; Flags: Precursor
gi|16226316|gb|AAL16132.1|AF428300_1 AT5g11770/T22P22_160 [Arabidopsis thaliana]
gi|643090|emb|CAA58887.1| NADH dehydrogenase [Arabidopsis thaliana]
gi|7573391|emb|CAB87695.1| NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana]
gi|15810287|gb|AAL07031.1| putative NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana]
gi|20466764|gb|AAM20699.1| NADH dehydrogenase / ubiquinone [Arabidopsis thaliana]
gi|21537333|gb|AAM61674.1| NADH dehydrogenase ubiquinone [Arabidopsis thaliana]
gi|22136468|gb|AAM91312.1| NADH dehydrogenase / ubiquinone [Arabidopsis thaliana]
gi|332004336|gb|AED91719.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Arabidopsis
thaliana]
Length = 218
Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats.
Identities = 114/145 (78%), Positives = 124/145 (85%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD M
Sbjct: 66 EFVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCM 125
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 126 IVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 185
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPPTAEAL+YG+L LQKKI R
Sbjct: 186 PGCPPTAEALLYGLLQLQKKINRRK 210
>gi|125772981|ref|XP_001357749.1| GA15185 [Drosophila pseudoobscura pseudoobscura]
gi|54637481|gb|EAL26883.1| GA15185 [Drosophila pseudoobscura pseudoobscura]
Length = 211
Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats.
Identities = 112/154 (72%), Positives = 131/154 (85%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
++ + + + +D L+ W R GSL MTFGLACCAVEMM + PRYD++RFG RASP
Sbjct: 53 NQNSWSEWTLARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGMVFRASP 112
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+DVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 113 RQTDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 172
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
PVDIYVPGCPPTAEAL+YG+L LQKK+RR+ ++
Sbjct: 173 PVDIYVPGCPPTAEALLYGLLQLQKKVRRMRTLQ 206
>gi|285017793|ref|YP_003375504.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenaseI chain b)
(ndh-1, chain b) (nuo2) oxidoreductase [Xanthomonas
albilineans GPE PC73]
gi|283473011|emb|CBA15516.1| probable nadh-quinone oxidoreductase chain b (nadh dehydrogenaseI
chain b) (ndh-1, chain b) (nuo2). oxidoreductase protein
[Xanthomonas albilineans]
Length = 184
Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats.
Identities = 117/184 (63%), Positives = 141/184 (76%), Gaps = 3/184 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + T+++ + + ++ + + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 1 MGVIQTLDRLMTNPIPEGRVDDILRPEGE--NPLLEKGYVTTSVDALLNWARTGSMWPMT 58
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59 FGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWR 178
Query: 180 VGNV 183
+
Sbjct: 179 TQTI 182
>gi|118602276|ref|YP_903491.1| NADH-quinone oxidoreductase, B subunit [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
gi|218528022|sp|A1AVR3|NUOB_RUTMC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|118567215|gb|ABL02020.1| NADH dehydrogenase subunit B [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 159
Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats.
Identities = 113/153 (73%), Positives = 130/153 (84%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ +GF+ TS++ ++ WARTGSL MTFGLACCAVEMM+A RYDL+RFG R +P
Sbjct: 4 EGLMKQGFVTTSLNNVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY+VVRGCDRIV
Sbjct: 64 RQSDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVDIYVPGCPPTAEAL+YGI+ LQ KIR +
Sbjct: 124 PVDIYVPGCPPTAEALLYGIIQLQDKIRSTNTI 156
>gi|194765240|ref|XP_001964735.1| GF23344 [Drosophila ananassae]
gi|190615007|gb|EDV30531.1| GF23344 [Drosophila ananassae]
Length = 212
Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats.
Identities = 109/154 (70%), Positives = 130/154 (84%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
++ + + V +D LV W+R GS+ MTFGLACCAVEMM + PRYD++R+G R SP
Sbjct: 54 NQSSTGEWAVARLDDLVNWSRKGSIWPMTFGLACCAVEMMHFAAPRYDMDRYGVLFRESP 113
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D MIVAGTLTNKMA ALR+VYD+MP+PR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 114 RQADCMIVAGTLTNKMAPALRKVYDEMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 173
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
PVDIYVPGCPPTAEAL+YG+L LQKKI+R+ V+
Sbjct: 174 PVDIYVPGCPPTAEALMYGVLQLQKKIKRIKTVQ 207
>gi|15836909|ref|NP_297597.1| NADH dehydrogenase subunit B [Xylella fastidiosa 9a5c]
gi|9105129|gb|AAF83117.1|AE003884_2 NADH-ubiquinone oxidoreductase, NQO6 subunit [Xylella fastidiosa
9a5c]
Length = 191
Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats.
Identities = 116/183 (63%), Positives = 138/183 (75%), Gaps = 3/183 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + +++ + + ++ + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 8 MGVIQAIDRLMTNPIPDGQVDDILRPQGESP--LLQKGYVTTSVDALLNWARTGSMWPMT 65
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 66 FGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 125
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 126 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWR 185
Query: 180 VGN 182
Sbjct: 186 TQT 188
>gi|195357046|ref|XP_002044925.1| GM11675 [Drosophila sechellia]
gi|194124267|gb|EDW46310.1| GM11675 [Drosophila sechellia]
Length = 221
Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats.
Identities = 110/188 (58%), Positives = 143/188 (76%), Gaps = 6/188 (3%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSLM 56
L +N ++ Q + + +V + + + + + + + +D L+ W R GS+
Sbjct: 29 LPALNMVLVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSIW 88
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
+TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYDQ
Sbjct: 89 PLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQ 148
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
MPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK
Sbjct: 149 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKK 208
Query: 177 IRRVGNVK 184
++R+ ++
Sbjct: 209 VKRMKTLQ 216
>gi|30249736|ref|NP_841806.1| NADH dehydrogenase subunit B [Nitrosomonas europaea ATCC 19718]
gi|75540322|sp|Q82TU4|NUOB_NITEU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|30180773|emb|CAD85687.1| Respiratory-chain NADH dehydrogenase 20 Kd subunit [Nitrosomonas
europaea ATCC 19718]
Length = 158
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 115/149 (77%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS+D L+ W RTGS+ MTFGLACCAVEMMQ RYDL+RFG R SPRQSD
Sbjct: 8 DKGFVTTSLDSLINWGRTGSMWPMTFGLACCAVEMMQTGASRYDLDRFGIVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIKRTNTI 156
>gi|170069760|ref|XP_001869339.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial [Culex
quinquefasciatus]
gi|167865642|gb|EDS29025.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial [Culex
quinquefasciatus]
Length = 212
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 108/145 (74%), Positives = 127/145 (87%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
V +D ++ W R GS+ +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+IVA
Sbjct: 63 VARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVA 122
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC
Sbjct: 123 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 182
Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
PPTAEAL+YGIL LQKK++R+ ++
Sbjct: 183 PPTAEALLYGILQLQKKVKRMKTLQ 207
>gi|150406467|ref|YP_001315111.1| NADH dehydrogenase subunit 10 [Chlorokybus atmophyticus]
gi|126507704|gb|ABO15101.1| NADH dehydrogenase subunit 10 [Chlorokybus atmophyticus]
Length = 158
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 118/152 (77%), Positives = 128/152 (84%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
+L++ VDQL+ WAR GSL MTFGLACCAVEMM RYDL+RFG R SPRQ
Sbjct: 2 TPKVEYLISKVDQLIHWARKGSLWPMTFGLACCAVEMMHTGASRYDLDRFGIIFRPSPRQ 61
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
SDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 62 SDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPV 121
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
DIYVPGCPPTAEAL+YGIL LQKK++R N K
Sbjct: 122 DIYVPGCPPTAEALLYGILQLQKKMKRTKNTK 153
>gi|255019908|ref|ZP_05291983.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus
ATCC 51756]
gi|254970688|gb|EET28175.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus
ATCC 51756]
Length = 158
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 115/149 (77%), Positives = 129/149 (86%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS+D +V W+RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 EKGFVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIIFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL++G++ LQKKIRR +
Sbjct: 128 YVPGCPPTAEALLFGLIQLQKKIRRTNTI 156
>gi|86358166|ref|YP_470058.1| NADH dehydrogenase subunit B [Rhizobium etli CFN 42]
gi|123511609|sp|Q2K755|NUOB2_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|86282268|gb|ABC91331.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN
42]
Length = 186
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 136/181 (75%), Positives = 154/181 (85%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
T + + Q + D I++E+ KGFLVTS D+L+TWARTGSLMWMTFGLA
Sbjct: 5 TQPHSAPRNFQFPGQQRQGDPTMGTINAELADKGFLVTSTDELITWARTGSLMWMTFGLA 64
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCA+EMMQ SMPRYD+ERFG APRASPRQSD+MIVAGTL NKMA ALR+VYDQMPEPRYV
Sbjct: 65 CCAIEMMQMSMPRYDIERFGVAPRASPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRYV 124
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
ISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQ+KIRR G++
Sbjct: 125 ISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQRKIRRNGSI 184
Query: 184 K 184
+
Sbjct: 185 E 185
>gi|94496481|ref|ZP_01303058.1| NuoB, NADH dehydrogenase I, B subunit [Sphingomonas sp. SKA58]
gi|94424227|gb|EAT09251.1| NuoB, NADH dehydrogenase I, B subunit [Sphingomonas sp. SKA58]
Length = 172
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 124/171 (72%), Positives = 144/171 (84%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
+ F+ ++ E++ KGFLVTS ++L WARTGSL WMTFGLACCAVEM+ +
Sbjct: 1 MPPVGTQPDQDFFNALNGEVSDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVN 60
Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
MPRYD+ERFG APRASPRQSDVMIVAGTL NKMA ALR+VYDQM P+YVISMGSCANGG
Sbjct: 61 MPRYDMERFGAAPRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVISMGSCANGG 120
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+G ++
Sbjct: 121 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRIGTIE 171
>gi|328854118|gb|EGG03252.1| hypothetical protein MELLADRAFT_78587 [Melampsora larici-populina
98AG31]
Length = 258
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 111/184 (60%), Positives = 137/184 (74%), Gaps = 5/184 (2%)
Query: 4 TTVNQKIISGQSSCSLEKVD-----ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58
T++ I+ S D ++ + + ++++++D++V W R GS+ M
Sbjct: 68 TSIKSPTIASTPSPYSPAFDLARQGSNQLSLETPRNGAEYVLSTIDKIVNWGRQGSMWPM 127
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMM + RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP
Sbjct: 128 TFGLACCAVEMMHMAAARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMP 187
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG+L LQ+K+R
Sbjct: 188 EPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDLYVPGCPPTAEALLYGMLQLQRKMR 247
Query: 179 RVGN 182
R
Sbjct: 248 RSRK 251
>gi|313227729|emb|CBY22878.1| unnamed protein product [Oikopleura dioica]
Length = 228
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 111/163 (68%), Positives = 128/163 (78%)
Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ + RI ++ T +D + + SL MTFGLACCAVEMM + PRYD++
Sbjct: 36 PIKREADRIKKFDNKVEYVTTKLDDIKNYISANSLWPMTFGLACCAVEMMHFAAPRYDMD 95
Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
RFG RASPRQSD+MIVAGTL+NKMA ALRRVYDQMP PRYV+SMGSCANGGGYYHYSY
Sbjct: 96 RFGVVFRASPRQSDLMIVAGTLSNKMAPALRRVYDQMPFPRYVLSMGSCANGGGYYHYSY 155
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SVVRG DRIVPVD+YVPGCPP+AEAL+YGILLLQKKI+R NV
Sbjct: 156 SVVRGVDRIVPVDVYVPGCPPSAEALLYGILLLQKKIKRSANV 198
>gi|195381615|ref|XP_002049543.1| GJ21650 [Drosophila virilis]
gi|194144340|gb|EDW60736.1| GJ21650 [Drosophila virilis]
Length = 223
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 106/155 (68%), Positives = 131/155 (84%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
+ + + + + +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RAS
Sbjct: 64 TKQASMAEWSMARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRAS 123
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 124 PRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 183
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PVDIYVPGCPPTAEAL+YG+L LQKK++R+ ++
Sbjct: 184 IPVDIYVPGCPPTAEALLYGVLQLQKKVKRMRTLQ 218
>gi|6007781|gb|AAF01037.1| NADH ubiquinone oxidoreductase PSST subunit [Lupinus luteus]
Length = 213
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 113/145 (77%), Positives = 123/145 (84%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD M
Sbjct: 61 EFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCM 120
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 121 IVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 180
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPPTAEAL+YG+L LQKKI R
Sbjct: 181 PGCPPTAEALLYGLLQLQKKINRRK 205
>gi|148244390|ref|YP_001219084.1| NADH dehydrogenase I chain B [Candidatus Vesicomyosocius okutanii
HA]
gi|218528012|sp|A5CXF8|NUOB_VESOH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|146326217|dbj|BAF61360.1| NADH dehydrogenase I chain B [Candidatus Vesicomyosocius okutanii
HA]
Length = 159
Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats.
Identities = 112/153 (73%), Positives = 131/153 (85%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ +GF+ S+D+++ WARTGSL MTFGLACCAVEMM+A RYDL+RFG R +P
Sbjct: 4 EGLIKQGFVTMSLDRVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTLTNKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSY+V+RGCDRIV
Sbjct: 64 RQSDLMIVAGTLTNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYAVIRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVDIYVPGCPPTAEAL+YGI+ LQ KIRR +
Sbjct: 124 PVDIYVPGCPPTAEALLYGIMQLQDKIRRTNTI 156
>gi|149927542|ref|ZP_01915796.1| NADH dehydrogenase subunit B [Limnobacter sp. MED105]
gi|149823815|gb|EDM83041.1| NADH dehydrogenase subunit B [Limnobacter sp. MED105]
Length = 158
Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 110/149 (73%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 NEGFITTTADKLINWGRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 LMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG+L LQ KI+ +
Sbjct: 128 YVPGCPPTAEALMYGLLQLQNKIKTTSTI 156
>gi|195567032|ref|XP_002107079.1| GD15767 [Drosophila simulans]
gi|194204476|gb|EDX18052.1| GD15767 [Drosophila simulans]
Length = 221
Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 110/188 (58%), Positives = 143/188 (76%), Gaps = 6/188 (3%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSLM 56
L +N ++ Q + + +V + + + + + + + +D L+ W R GS+
Sbjct: 29 LPALNMVLVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSIW 88
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
+TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYDQ
Sbjct: 89 PLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQ 148
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
MPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK
Sbjct: 149 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKK 208
Query: 177 IRRVGNVK 184
++R+ ++
Sbjct: 209 VKRMKTLQ 216
>gi|323452394|gb|EGB08268.1| NADH dehydrogenase subunit 10 [Aureococcus anophagefferens]
Length = 162
Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 112/147 (76%), Positives = 129/147 (87%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+VT VD+LV WAR GS+ MTFGLACCAVEMM ++ RYD+ERFG RASPRQSDVM
Sbjct: 10 EFMVTKVDELVNWARKGSIWPMTFGLACCAVEMMHSATARYDMERFGMVFRASPRQSDVM 69
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRG DRIVPVDIYV
Sbjct: 70 IVAGTLTNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYAVVRGVDRIVPVDIYV 129
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183
PGCPPTAEAL+YG++ LQKK++ ++
Sbjct: 130 PGCPPTAEALLYGLIQLQKKVKSNRSL 156
>gi|225718368|gb|ACO15030.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
[Caligus clemensi]
Length = 211
Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 114/186 (61%), Positives = 136/186 (73%), Gaps = 9/186 (4%)
Query: 8 QKIISGQSSCSLEKVDADFSRISSEIT---------HKGFLVTSVDQLVTWARTGSLMWM 58
I +S + V IS + + ++V +D L+ W R SL +
Sbjct: 21 SSSIKEKSFPDRDVVPPMEKDISGQYSPFRVDIKKNKAEYVVARLDDLINWGRKTSLWPL 80
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMM + PRYD++R+G RASPRQ+DV++VAGTLTNKMA A R+VYDQM
Sbjct: 81 TFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVILVAGTLTNKMAPAFRKVYDQML 140
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI+
Sbjct: 141 EPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQKKIK 200
Query: 179 RVGNVK 184
R+ NV+
Sbjct: 201 RMKNVQ 206
>gi|169774064|ref|XP_001821500.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
gi|238508860|ref|XP_002385611.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
flavus NRRL3357]
gi|83769362|dbj|BAE59498.1| unnamed protein product [Aspergillus oryzae]
gi|220688358|gb|EED44712.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
flavus NRRL3357]
Length = 228
Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 118/190 (62%), Positives = 138/190 (72%), Gaps = 9/190 (4%)
Query: 4 TTVNQKIIS-------GQSSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGS 54
TT NQ + GQ + K+ + S E +++T++DQ+ WAR S
Sbjct: 34 TTPNQSATALEHKGHSGQPLTASGKIRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSS 93
Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
L MTFGLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VY
Sbjct: 94 LWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVY 153
Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
DQMP+PR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQ
Sbjct: 154 DQMPDPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQ 213
Query: 175 KKIRRVGNVK 184
KK+R +
Sbjct: 214 KKMRHTRITR 223
>gi|307109384|gb|EFN57622.1| hypothetical protein CHLNCDRAFT_21383 [Chlorella variabilis]
Length = 160
Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 112/153 (73%), Positives = 124/153 (81%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ F+V+ VDQLV WAR S+ MTFGLACCAVEMM RYD +RFG R SPR
Sbjct: 3 AASKGQFVVSKVDQLVNWARRSSIWPMTFGLACCAVEMMHTGAARYDFDRFGIIFRPSPR 62
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
QSD MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVP
Sbjct: 63 QSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVP 122
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VDIYVPGCPPTAEAL+YG+L LQKKI R +
Sbjct: 123 VDIYVPGCPPTAEALLYGMLQLQKKIGRTKKTQ 155
>gi|328769253|gb|EGF79297.1| hypothetical protein BATDEDRAFT_12186 [Batrachochytrium
dendrobatidis JAM81]
Length = 170
Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 110/148 (74%), Positives = 127/148 (85%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F++TS+D LV W RT S+ +TFGLACCAVEMM + PRYD +R G RASPRQ+DV+
Sbjct: 18 EFVLTSLDSLVNWNRTSSIWPLTFGLACCAVEMMHMATPRYDQDRLGIVFRASPRQADVL 77
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR++YDQMP PR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYV
Sbjct: 78 IVAGTLTNKMAPALRKIYDQMPSPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYV 137
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184
PGCPPT+EAL+YG+L LQKK+RR VK
Sbjct: 138 PGCPPTSEALLYGVLQLQKKMRRERVVK 165
>gi|218528068|sp|Q9PGJ4|NUOB_XYLFA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
Length = 184
Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 116/183 (63%), Positives = 138/183 (75%), Gaps = 3/183 (1%)
Query: 1 MG-LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
MG + +++ + + ++ + + KG++ TSVD L+ WARTGS+ MT
Sbjct: 1 MGVIQAIDRLMTNPIPDGQVDDILRPQGESP--LLQKGYVTTSVDALLNWARTGSMWPMT 58
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
FGLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+
Sbjct: 59 FGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPD 118
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 119 PKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWR 178
Query: 180 VGN 182
Sbjct: 179 TQT 181
>gi|152980178|ref|YP_001353153.1| NADH dehydrogenase I chain B [Janthinobacterium sp. Marseille]
gi|218527992|sp|A6SY06|NUOB_JANMA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|151280255|gb|ABR88665.1| NADH dehydrogenase I chain B [Janthinobacterium sp. Marseille]
Length = 158
Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 113/149 (75%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
++GF+ T+ D+L+ W RTGS+ MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 NEGFVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALLYGIMQLQNKIRRTNTI 156
>gi|195158809|ref|XP_002020277.1| GL13892 [Drosophila persimilis]
gi|194117046|gb|EDW39089.1| GL13892 [Drosophila persimilis]
Length = 205
Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats.
Identities = 112/154 (72%), Positives = 131/154 (85%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
++ + + + +D L+ W R GSL MTFGLACCAVEMM + PRYD++RFG RASP
Sbjct: 47 NQNSWSEWTLARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRFGMVFRASP 106
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+DVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 107 RQTDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 166
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
PVDIYVPGCPPTAEAL+YG+L LQKK+RR+ ++
Sbjct: 167 PVDIYVPGCPPTAEALLYGLLQLQKKVRRMRTLQ 200
>gi|254796791|ref|YP_003081628.1| NADH-quinone oxidoreductase chain b [Neorickettsia risticii str.
Illinois]
gi|254590025|gb|ACT69387.1| NADH-quinone oxidoreductase chain b [Neorickettsia risticii str.
Illinois]
Length = 167
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 116/152 (76%), Positives = 127/152 (83%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
S + G+LV +D L+ WAR GSL MTFGLACCAVEMM + RYD++RFG R SP
Sbjct: 12 SNVGSDGYLVAKLDDLINWARAGSLWPMTFGLACCAVEMMHFTASRYDMDRFGMIFRPSP 71
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 72 RQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIV 131
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
PVD+YVPGCPPTAEAL+YG+L LQKKI R N
Sbjct: 132 PVDVYVPGCPPTAEALLYGVLCLQKKINRQRN 163
>gi|198284345|ref|YP_002220666.1| NADH dehydrogenase subunit B [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218666644|ref|YP_002427007.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218527968|sp|B5EN70|NUOB2_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|198248866|gb|ACH84459.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518857|gb|ACK79443.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 158
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 114/153 (74%), Positives = 129/153 (84%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ KGF+ T++D +V W RTGSL MTFGLACCAVEMM A RYDL+RFG R SP
Sbjct: 4 EGLLEKGFVTTTIDTVVNWGRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYS+VRGCDRIV
Sbjct: 64 RQSDVMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSIVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVDIYVPGCPPTAEAL++G++ LQKKIRR +
Sbjct: 124 PVDIYVPGCPPTAEALLFGLVQLQKKIRRTNTI 156
>gi|241518517|ref|YP_002979145.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240862930|gb|ACS60594.1| NADH-quinone oxidoreductase, B subunit [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 185
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 136/184 (73%), Positives = 153/184 (83%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M + + ++ Q D I++E+ KGFLVTS D+L+TWARTGSLMWMTF
Sbjct: 1 MSQSDHPRSPMNFQYPGEQTGGDPTMGMINAELADKGFLVTSTDELITWARTGSLMWMTF 60
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCA+EMMQ SMPRYD+ERFG APR SPRQSD+MIVAGTL NKMA ALR+VYDQMPEP
Sbjct: 61 GLACCAIEMMQMSMPRYDVERFGVAPRGSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEP 120
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
RYVISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YGILLLQKKIRR
Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGILLLQKKIRRN 180
Query: 181 GNVK 184
G ++
Sbjct: 181 GTIE 184
>gi|190575277|ref|YP_001973122.1| NADH dehydrogenase subunit B [Stenotrophomonas maltophilia K279a]
gi|194366603|ref|YP_002029213.1| NADH dehydrogenase subunit B [Stenotrophomonas maltophilia R551-3]
gi|254524125|ref|ZP_05136180.1| NADH-ubiquinone oxidoreductase Nqo6 subunit [Stenotrophomonas sp.
SKA14]
gi|218528009|sp|B4SQT5|NUOB_STRM5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528010|sp|B2FNX8|NUOB_STRMK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|190013199|emb|CAQ46832.1| putative NADH dehydrogenase I chain B [Stenotrophomonas maltophilia
K279a]
gi|194349407|gb|ACF52530.1| NADH-quinone oxidoreductase, B subunit [Stenotrophomonas
maltophilia R551-3]
gi|219721716|gb|EED40241.1| NADH-ubiquinone oxidoreductase Nqo6 subunit [Stenotrophomonas sp.
SKA14]
Length = 184
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 117/183 (63%), Positives = 137/183 (74%), Gaps = 1/183 (0%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
MG+ +++ + D + + KGF+ TSVD L+ WARTGS+ MTF
Sbjct: 1 MGVIQTLDGLMN-NPTPEGRVDDILRPEGDNPLLEKGFVTTSVDALLNWARTGSMWPMTF 59
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMM A R DL+R+G R SPRQSDVMIVAGTL NKMA ALR+VYDQMP+P
Sbjct: 60 GLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDP 119
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
++VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPTAEAL+YGIL LQKKI R
Sbjct: 120 KWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIWRT 179
Query: 181 GNV 183
+
Sbjct: 180 QTI 182
>gi|195457088|ref|XP_002075420.1| GK17823 [Drosophila willistoni]
gi|194171505|gb|EDW86406.1| GK17823 [Drosophila willistoni]
Length = 229
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 108/186 (58%), Positives = 138/186 (74%), Gaps = 6/186 (3%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSLMWM 58
N + Q + + + + + + + + + +D L+ W R GS+ +
Sbjct: 39 NANAVWVRQQQTLPVVESPDTLPKKGYSPFGTKQSSMAEWSLARLDDLLNWGRKGSIWPL 98
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYDQMP
Sbjct: 99 TFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMP 158
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
EPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++
Sbjct: 159 EPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKVK 218
Query: 179 RVGNVK 184
R+ ++
Sbjct: 219 RMKTLQ 224
>gi|289741217|gb|ADD19356.1| NADH-ubiquinone oxidoreductase NUFS7/PSST/20 kDa subunit [Glossina
morsitans morsitans]
Length = 220
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 107/184 (58%), Positives = 136/184 (73%), Gaps = 3/184 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M ++ +S + + + + + + +D L+ W R S+ +TF
Sbjct: 35 MLRKQQTMPVVDPKSPLPKKGYSPF---GTKQSSTGEWTMARLDDLLNWGRKSSIWPLTF 91
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 92 GLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEP 151
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK++R+
Sbjct: 152 RWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKKVKRM 211
Query: 181 GNVK 184
++
Sbjct: 212 KTLQ 215
>gi|255550832|ref|XP_002516464.1| NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
gi|223544284|gb|EEF45805.1| NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
Length = 215
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 113/179 (63%), Positives = 131/179 (73%), Gaps = 1/179 (0%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITH-KGFLVTSVDQLVTWARTGSLMWMTFGL 62
TT+ + + + ++ ++++ VD L+ WAR GS+ MTFGL
Sbjct: 29 TTLPSLSAEATPPTPYGRAPPPSTSFPTGLSKTAEYVISKVDDLMNWARRGSIWPMTFGL 88
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+
Sbjct: 89 ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRW 148
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQK+I R
Sbjct: 149 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKRINRRK 207
>gi|77745495|gb|ABB02646.1| NADH-ubiquinone oxidoreductase subunit-like [Solanum tuberosum]
Length = 213
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 113/172 (65%), Positives = 130/172 (75%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + + + ++++ VD L+ WAR GS+ MTFGLACCAVEMM
Sbjct: 36 ASSPATYGGAQPPSMNTPAGISKPAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMH 95
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
A RYD +RFG R SPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCAN
Sbjct: 96 AGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCAN 155
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQKKI R ++
Sbjct: 156 GGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKINRRKDL 207
>gi|226348821|gb|ACO50725.1| NADH dehydrogenase subunit 10 [Micromonas pusilla CCMP1545]
Length = 158
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 111/150 (74%), Positives = 125/150 (83%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ ++++ VD L+ WAR GSL MTFGLACCAVEMM RYDL+RFG R SPRQS
Sbjct: 3 SQAEYILSKVDALLNWARKGSLWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRPSPRQS 62
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSY+VVRGCDRIVPVD
Sbjct: 63 DVMIVAGTLTNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYAVVRGCDRIVPVD 122
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+YVPGCPPTAEAL+YG+L LQKKI N
Sbjct: 123 VYVPGCPPTAEALLYGLLQLQKKIHTQTNT 152
>gi|195123641|ref|XP_002006312.1| GI18637 [Drosophila mojavensis]
gi|193911380|gb|EDW10247.1| GI18637 [Drosophila mojavensis]
Length = 223
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 106/155 (68%), Positives = 131/155 (84%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
+ + + + + +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RAS
Sbjct: 64 TKQSSMAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRAS 123
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 124 PRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 183
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PVDIYVPGCPPTAEAL+YG+L LQKK++R+ ++
Sbjct: 184 IPVDIYVPGCPPTAEALMYGVLQLQKKVKRMKTLQ 218
>gi|187929292|ref|YP_001899779.1| NADH dehydrogenase subunit B [Ralstonia pickettii 12J]
gi|241663483|ref|YP_002981843.1| NADH dehydrogenase subunit B [Ralstonia pickettii 12D]
gi|309781853|ref|ZP_07676586.1| NADH dehydrogenase (ubiquinone), B subunit [Ralstonia sp.
5_7_47FAA]
gi|218528007|sp|B2U7R0|NUOB_RALPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|187726182|gb|ACD27347.1| NADH-quinone oxidoreductase, B subunit [Ralstonia pickettii 12J]
gi|240865510|gb|ACS63171.1| NADH-quinone oxidoreductase, B subunit [Ralstonia pickettii 12D]
gi|308919494|gb|EFP65158.1| NADH dehydrogenase (ubiquinone), B subunit [Ralstonia sp.
5_7_47FAA]
Length = 160
Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats.
Identities = 115/149 (77%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 NEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYGI+ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALIYGIIQLQAKIRRTNTI 156
>gi|194894035|ref|XP_001977994.1| GG19352 [Drosophila erecta]
gi|190649643|gb|EDV46921.1| GG19352 [Drosophila erecta]
Length = 221
Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats.
Identities = 109/188 (57%), Positives = 143/188 (76%), Gaps = 6/188 (3%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSLM 56
+ +N ++ Q + + +V + + + + + + + +D L+ W R GS+
Sbjct: 29 VPALNMVLVRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSIW 88
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
+TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYDQ
Sbjct: 89 PLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQ 148
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
MPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK
Sbjct: 149 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKK 208
Query: 177 IRRVGNVK 184
++R+ ++
Sbjct: 209 VKRMKTLQ 216
>gi|17546780|ref|NP_520182.1| NADH dehydrogenase subunit B [Ralstonia solanacearum GMI1000]
gi|83746298|ref|ZP_00943351.1| NADH-quinone oxidoreductase chain B [Ralstonia solanacearum UW551]
gi|207723874|ref|YP_002254272.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum MolK2]
gi|207742736|ref|YP_002259128.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum
IPO1609]
gi|81504305|sp|Q8XXQ2|NUOB_RALSO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|17429080|emb|CAD15768.1| probable nadh dehydrogenaseI(chain b) oxidoreductase protein
[Ralstonia solanacearum GMI1000]
gi|83727048|gb|EAP74173.1| NADH-quinone oxidoreductase chain B [Ralstonia solanacearum UW551]
gi|206589079|emb|CAQ36041.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum MolK2]
gi|206594130|emb|CAQ61057.1| nadh dehydrogenaseI(chain b) protein [Ralstonia solanacearum
IPO1609]
gi|299066334|emb|CBJ37518.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
CMR15]
Length = 160
Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats.
Identities = 115/149 (77%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 NEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYGI+ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALIYGIIQLQAKIRRTNTI 156
>gi|297811291|ref|XP_002873529.1| hypothetical protein ARALYDRAFT_488014 [Arabidopsis lyrata subsp.
lyrata]
gi|297319366|gb|EFH49788.1| hypothetical protein ARALYDRAFT_488014 [Arabidopsis lyrata subsp.
lyrata]
Length = 211
Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats.
Identities = 114/145 (78%), Positives = 124/145 (85%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD M
Sbjct: 66 EFVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCM 125
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 126 IVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 185
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPPTAEAL+YG+L LQKKI R
Sbjct: 186 PGCPPTAEALLYGLLQLQKKINRRK 210
>gi|254247658|ref|ZP_04940979.1| NADH dehydrogenase beta subunit [Burkholderia cenocepacia PC184]
gi|124872434|gb|EAY64150.1| NADH dehydrogenase beta subunit [Burkholderia cenocepacia PC184]
Length = 173
Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 22 KEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 81
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 82 VMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 141
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 142 YVPGCPPTAEALVYGVIQLQAKIRRTNTI 170
>gi|124266597|ref|YP_001020601.1| NADH dehydrogenase subunit B [Methylibium petroleiphilum PM1]
gi|218527995|sp|A2SFM7|NUOB_METPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|124259372|gb|ABM94366.1| NADH dehydrogenase [Methylibium petroleiphilum PM1]
Length = 158
Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats.
Identities = 113/149 (75%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ TS D+L+ W++TGSL MTFGLACCAVEMM A RYD++RFG R SPRQSD
Sbjct: 8 KEGFITTSADKLINWSKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTL NKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 LMIVAGTLCNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGIL LQ KIRR +
Sbjct: 128 YVPGCPPTAEALLYGILQLQAKIRRENTI 156
>gi|134095030|ref|YP_001100105.1| NADH dehydrogenase subunit B [Herminiimonas arsenicoxydans]
gi|218527991|sp|A4G643|NUOB_HERAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|133738933|emb|CAL61980.1| NADH-quinone oxidoreductase subunit B (NADH dehydrogenase I subunit
B) (NDH-1 subunit B) [Herminiimonas arsenicoxydans]
Length = 158
Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats.
Identities = 112/149 (75%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
++GF+ T+ D+L+ W RTGS+ MTFGLACCAVEMM A RYD++RFG R SPRQSD
Sbjct: 8 NEGFVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDMDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALLYGIMQLQNKIRRTNTI 156
>gi|198284143|ref|YP_002220464.1| NADH dehydrogenase subunit B [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218667459|ref|YP_002426797.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218527940|sp|B5EM21|NUOB1_ACIF5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|238065067|sp|B7J6H2|NUOB_ACIF2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|198248664|gb|ACH84257.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218519672|gb|ACK80258.1| NADH-quinone oxidoreductase, B subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 158
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 117/153 (76%), Positives = 130/153 (84%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
I KGF+ TS+D +V W+RTGSL MTFGLACCAVEMM A RYDL+RFG R SP
Sbjct: 4 EGILEKGFVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGLLFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDLMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVDIYVPGCPPTAEALI+G++ LQKKIRR +
Sbjct: 124 PVDIYVPGCPPTAEALIFGLIQLQKKIRRTNTI 156
>gi|254468178|ref|ZP_05081584.1| NADH-quinone oxidoreductase, b subunit [beta proteobacterium KB13]
gi|207086988|gb|EDZ64271.1| NADH-quinone oxidoreductase, b subunit [beta proteobacterium KB13]
Length = 158
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 109/153 (71%), Positives = 128/153 (83%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ KGF+ T++D L+ + RT S+ MTFGLACCAVEMM A RYDL+RFG R SP
Sbjct: 4 DGLLEKGFITTNLDTLINYTRTNSMWPMTFGLACCAVEMMHAGASRYDLDRFGMVFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDLMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEAL++G+L LQKKI+R +
Sbjct: 124 PVDVYVPGCPPTAEALMFGLLQLQKKIKRTNTI 156
>gi|195479097|ref|XP_002100761.1| GE15999 [Drosophila yakuba]
gi|194188285|gb|EDX01869.1| GE15999 [Drosophila yakuba]
Length = 221
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 109/188 (57%), Positives = 143/188 (76%), Gaps = 6/188 (3%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRI------SSEITHKGFLVTSVDQLVTWARTGSLM 56
+ +N ++ Q + + +V + + + + + + + +D L+ W R GS+
Sbjct: 29 VPALNMVLMRQQQTLPVAEVAQNLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSIW 88
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
+TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAGTLTNKMA ALR+VYDQ
Sbjct: 89 PLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQ 148
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
MPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YG+L LQKK
Sbjct: 149 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGVLQLQKK 208
Query: 177 IRRVGNVK 184
++R+ ++
Sbjct: 209 VKRMKTLQ 216
>gi|157117673|ref|XP_001658881.1| NADH-plastoquinone oxidoreductase [Aedes aegypti]
gi|108875970|gb|EAT40195.1| NADH-plastoquinone oxidoreductase [Aedes aegypti]
Length = 215
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 115/187 (61%), Positives = 140/187 (74%), Gaps = 5/187 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG-----FLVTSVDQLVTWARTGSLMW 57
+ TVN I + + + + D S K + V +D ++ W R GS+
Sbjct: 24 VDTVNMNQIREKGTLPVVEKDKPEKLPYSPFGTKQSNWADWTVARLDDVLNWGRKGSIWP 83
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
+TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+IVAGTLTNKMA ALR+VYDQM
Sbjct: 84 LTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQM 143
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
PEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQKK+
Sbjct: 144 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYGILQLQKKV 203
Query: 178 RRVGNVK 184
+R+ ++
Sbjct: 204 KRMKTLQ 210
>gi|9652190|gb|AAF91434.1| NADH-ubiquinone oxidoreductase subunit PSST [Lupinus luteus]
Length = 192
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 113/145 (77%), Positives = 123/145 (84%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD M
Sbjct: 40 EFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCM 99
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 100 IVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 159
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPPTAEAL+YG+L LQKKI R
Sbjct: 160 PGCPPTAEALLYGLLQLQKKINRRK 184
>gi|224824822|ref|ZP_03697929.1| NADH-quinone oxidoreductase, B subunit [Lutiella nitroferrum 2002]
gi|224603315|gb|EEG09491.1| NADH-quinone oxidoreductase, B subunit [Lutiella nitroferrum 2002]
Length = 158
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 113/153 (73%), Positives = 127/153 (83%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
I KGF+ T+ D+L+ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SP
Sbjct: 4 EGILEKGFITTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEAL+YGI+ LQ KI+R +
Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156
>gi|196002435|ref|XP_002111085.1| predicted protein [Trichoplax adhaerens]
gi|190587036|gb|EDV27089.1| predicted protein [Trichoplax adhaerens]
Length = 164
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 115/147 (78%), Positives = 128/147 (87%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+V VD ++ WAR SL MTFGLACCA+EMMQ + PRYD++RFG RASPRQ+DVM
Sbjct: 12 EFVVAKVDDVINWARRSSLWPMTFGLACCAIEMMQFAAPRYDMDRFGIVFRASPRQADVM 71
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYV
Sbjct: 72 IVAGTLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYV 131
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183
PGCPPTAEAL+YG LLLQKKIRR +V
Sbjct: 132 PGCPPTAEALLYGFLLLQKKIRRSKSV 158
>gi|206560702|ref|YP_002231467.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia J2315]
gi|198036744|emb|CAR52644.1| NADH dehydrogenase I chain B [Burkholderia cenocepacia J2315]
Length = 173
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 22 KEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 81
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 82 VMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 141
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 142 YVPGCPPTAEALVYGVIQLQAKIRRTNTI 170
>gi|167463142|ref|ZP_02328231.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322383097|ref|ZP_08056924.1| hypothetical protein PL1_1946 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321152759|gb|EFX45385.1| hypothetical protein PL1_1946 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 172
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 90/163 (55%), Positives = 116/163 (71%), Gaps = 1/163 (0%)
Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
++DA + E+ + T++DQ+ WAR+ SL +TFGLACCA+EMM YDL+
Sbjct: 4 RLDAVLPEVQEELQ-RNVFTTTLDQVKAWARSSSLWPLTFGLACCAIEMMGTGAAHYDLD 62
Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
RFG R SPRQ+DVMIVA T+T KMA LRR+Y+QMPEP++VI+MGSCA GG Y SY
Sbjct: 63 RFGVIFRTSPRQADVMIVAETVTKKMAPLLRRLYEQMPEPKWVIAMGSCATAGGPYVKSY 122
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+VV+G D++VPVD+Y+PGCPP ALIYGI LQ+KIR
Sbjct: 123 AVVKGVDQVVPVDVYIPGCPPNPAALIYGIHKLQEKIRYEAKT 165
>gi|73540665|ref|YP_295185.1| NADH dehydrogenase subunit B [Ralstonia eutropha JMP134]
gi|123625484|sp|Q473U2|NUOB_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|72118078|gb|AAZ60341.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ralstonia eutropha
JMP134]
Length = 160
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 NEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYG++ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALIYGVIQLQNKIKRTNTI 156
>gi|332526748|ref|ZP_08402850.1| NADH dehydrogenase subunit B [Rubrivivax benzoatilyticus JA2]
gi|332111151|gb|EGJ11183.1| NADH dehydrogenase subunit B [Rubrivivax benzoatilyticus JA2]
Length = 158
Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats.
Identities = 111/153 (72%), Positives = 129/153 (84%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ +GF+ TSVD+L+ W++TGSL MTFGLACCA+EMM A RYD++RFG R SP
Sbjct: 4 EGVIKEGFVTTSVDKLINWSKTGSLWPMTFGLACCAIEMMHAGAARYDMDRFGMLFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEAL+YGI+ LQ KIRR +
Sbjct: 124 PVDVYVPGCPPTAEALLYGIMQLQSKIRRENTI 156
>gi|300691026|ref|YP_003752021.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
PSI07]
gi|299078086|emb|CBJ50729.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
PSI07]
Length = 160
Score = 231 bits (588), Expect = 4e-59, Method: Composition-based stats.
Identities = 115/149 (77%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 NEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYGI+ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALIYGIIQLQAKIRRTNTI 156
>gi|294011308|ref|YP_003544768.1| NADH dehydrogenase I chain B [Sphingobium japonicum UT26S]
gi|292674638|dbj|BAI96156.1| NADH dehydrogenase I chain B [Sphingobium japonicum UT26S]
Length = 184
Score = 231 bits (588), Expect = 4e-59, Method: Composition-based stats.
Identities = 126/159 (79%), Positives = 143/159 (89%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
F ++SE++ KGFLVTS ++L WARTGSL WMTFGLACCAVEM+ +MPRYD+ERFG A
Sbjct: 25 FDALNSEVSDKGFLVTSTEELFQWARTGSLWWMTFGLACCAVEMIHVNMPRYDMERFGAA 84
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
PRASPRQSDVMIVAGTL NKMA ALR+VYDQM P+YVISMGSCANGGGYYHYSYSVVRG
Sbjct: 85 PRASPRQSDVMIVAGTLCNKMAPALRKVYDQMSNPKYVISMGSCANGGGYYHYSYSVVRG 144
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
CDRIVPVDIYVPGCPPTAEAL+YG++ LQ+KIRR+G V+
Sbjct: 145 CDRIVPVDIYVPGCPPTAEALLYGVMQLQRKIRRIGTVE 183
>gi|94309873|ref|YP_583083.1| NADH dehydrogenase subunit B [Cupriavidus metallidurans CH34]
gi|113867071|ref|YP_725560.1| NADH dehydrogenase subunit B [Ralstonia eutropha H16]
gi|194289160|ref|YP_002005067.1| NADH dehydrogenase subunit b [Cupriavidus taiwanensis LMG 19424]
gi|122947021|sp|Q0KCS9|NUOB_RALEH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218527987|sp|B3R3W8|NUOB_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528006|sp|Q1LPW2|NUOB_RALME RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|93353725|gb|ABF07814.1| NADH dehydrogenase chain B [Cupriavidus metallidurans CH34]
gi|113525847|emb|CAJ92192.1| NADH dehydrogenase chain B [Ralstonia eutropha H16]
gi|193222995|emb|CAQ69000.1| NADH:ubiquinone oxidoreductase complex I, chain B [Cupriavidus
taiwanensis LMG 19424]
Length = 160
Score = 231 bits (588), Expect = 4e-59, Method: Composition-based stats.
Identities = 113/149 (75%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYD++RFG R SPRQSD
Sbjct: 8 NEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGVIFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYG++ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALIYGVIQLQNKIKRTNTI 156
>gi|113170492|ref|YP_717283.1| ndhK [Ostreococcus tauri]
gi|112806899|emb|CAL36405.1| unnamed protein product [Ostreococcus tauri]
Length = 166
Score = 231 bits (588), Expect = 4e-59, Method: Composition-based stats.
Identities = 113/154 (73%), Positives = 127/154 (82%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
+ + + ++++ VD L+ WAR GSL MTFGLACCAVEMM RYDL+RFG R S
Sbjct: 7 TGQPSSSEYIISKVDGLINWARQGSLWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRPS 66
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 67 PRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 126
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVDIYVPGCPPTAEAL+YG+L LQKKI +
Sbjct: 127 VPVDIYVPGCPPTAEALLYGLLQLQKKISQNKTT 160
>gi|255956935|ref|XP_002569220.1| Pc21g22510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590931|emb|CAP97148.1| Pc21g22510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 222
Score = 231 bits (588), Expect = 4e-59, Method: Composition-based stats.
Identities = 112/181 (61%), Positives = 133/181 (73%), Gaps = 2/181 (1%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
T + +S + + E +++TS+D + WAR GSL ++FGLA
Sbjct: 39 ATAPSQALSPLTGRVHREAALPHDEKPKEAVD--YVLTSLDGIANWARQGSLWPLSFGLA 96
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM SMPRYD +R G RASPRQSDVMIVAGT+TNKMA ALR+VYDQMPEPR+V
Sbjct: 97 CCAVEMMHLSMPRYDQDRLGIIFRASPRQSDVMIVAGTVTNKMAPALRQVYDQMPEPRWV 156
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
ISMGSCANGGGYYHYSYSVVRG DR++PVDIY+PGCPPTAEAL+YGI LQKK+RR
Sbjct: 157 ISMGSCANGGGYYHYSYSVVRGVDRLIPVDIYLPGCPPTAEALMYGIFQLQKKMRRTRIT 216
Query: 184 K 184
+
Sbjct: 217 R 217
>gi|254491467|ref|ZP_05104646.1| NADH-quinone oxidoreductase, B subunit subfamily [Methylophaga
thiooxidans DMS010]
gi|224462945|gb|EEF79215.1| NADH-quinone oxidoreductase, B subunit subfamily [Methylophaga
thiooxydans DMS010]
Length = 162
Score = 231 bits (588), Expect = 5e-59, Method: Composition-based stats.
Identities = 117/149 (78%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KG + TS D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 EKGVVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 68 VMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQKKI+R +
Sbjct: 128 YVPGCPPTAEALLYGIVQLQKKIQRTNTI 156
>gi|296232412|ref|XP_002761582.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial-like [Callithrix jacchus]
Length = 305
Score = 231 bits (588), Expect = 5e-59, Method: Composition-based stats.
Identities = 107/182 (58%), Positives = 127/182 (69%), Gaps = 2/182 (1%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V+Q + + S + + + + + ++V +D L+ WAR SL MTFGLAC
Sbjct: 119 GVHQTVATNGPSSTQPALPKARAVVPKPSSRGEYVVAKLDDLINWARRSSLWPMTFGLAC 178
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALRRV P P
Sbjct: 179 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRRVGRVGPWPPLPS 238
Query: 125 SM--GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI+R
Sbjct: 239 RRLPHSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKRERR 298
Query: 183 VK 184
++
Sbjct: 299 LQ 300
>gi|303237657|ref|ZP_07324217.1| putative NADH dehydrogenase subunit B [Prevotella disiens
FB035-09AN]
gi|302482109|gb|EFL45144.1| putative NADH dehydrogenase subunit B [Prevotella disiens
FB035-09AN]
Length = 288
Score = 231 bits (588), Expect = 5e-59, Method: Composition-based stats.
Identities = 77/164 (46%), Positives = 114/164 (69%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + ++++++ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD
Sbjct: 17 KDNDTLEQMANDLNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA GG +
Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVKIEK 180
>gi|156384021|ref|XP_001633130.1| predicted protein [Nematostella vectensis]
gi|156220196|gb|EDO41067.1| predicted protein [Nematostella vectensis]
Length = 209
Score = 231 bits (588), Expect = 5e-59, Method: Composition-based stats.
Identities = 100/142 (70%), Positives = 123/142 (86%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
G++VT +D LV W+R SL + FGLACC +EMM + PRYD++RFG RASPRQ DVM
Sbjct: 56 GYVVTKLDDLVNWSRRSSLWPLMFGLACCGIEMMHFAAPRYDMDRFGVVFRASPRQIDVM 115
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
+V+GT+TNKMA ALRR+YDQMPEPR+VIS+GSCAN GGYY++SYSVVRGCDRI+PVDIYV
Sbjct: 116 LVSGTVTNKMAPALRRLYDQMPEPRWVISVGSCANSGGYYYHSYSVVRGCDRIIPVDIYV 175
Query: 157 PGCPPTAEALIYGILLLQKKIR 178
PGCPP+AEAL++G+L LQKK+R
Sbjct: 176 PGCPPSAEALLFGVLQLQKKVR 197
>gi|34496397|ref|NP_900612.1| NADH dehydrogenase subunit B [Chromobacterium violaceum ATCC 12472]
gi|81656636|sp|Q7NZI0|NUOB1_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|34102250|gb|AAQ58616.1| NADH-ubiquinone oxidoreductase, chain B [Chromobacterium violaceum
ATCC 12472]
Length = 158
Score = 230 bits (587), Expect = 5e-59, Method: Composition-based stats.
Identities = 113/153 (73%), Positives = 127/153 (83%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
I KGF+ T+ D+L+ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SP
Sbjct: 4 EGILEKGFVTTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEAL+YGI+ LQ KI+R +
Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156
>gi|292493667|ref|YP_003529106.1| NADH-quinone oxidoreductase subunit beta [Nitrosococcus halophilus
Nc4]
gi|291582262|gb|ADE16719.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus halophilus
Nc4]
Length = 158
Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats.
Identities = 116/149 (77%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+G + T+ D+L+ WARTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 ERGVVTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 68 VMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQKKIRR +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQKKIRRNYTI 156
>gi|312796901|ref|YP_004029823.1| NADH-quinone oxidoreductase chain B [Burkholderia rhizoxinica HKI
454]
gi|312168676|emb|CBW75679.1| NADH-quinone oxidoreductase chain B (EC 1.6.5.3) [Burkholderia
rhizoxinica HKI 454]
Length = 173
Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats.
Identities = 113/149 (75%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 22 KEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 81
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 82 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 141
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 142 YVPGCPPTAEALVYGVIQLQAKIRRTNTI 170
>gi|254251862|ref|ZP_04945180.1| NADH dehydrogenase beta subunit [Burkholderia dolosa AUO158]
gi|124894471|gb|EAY68351.1| NADH dehydrogenase beta subunit [Burkholderia dolosa AUO158]
Length = 173
Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 22 KEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 81
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 82 VMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 141
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 142 YVPGCPPTAEALVYGVIQLQAKIRRTNTI 170
>gi|1171866|sp|P42027|NDUS7_BRAOL RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit,
mitochondrial; AltName: Full=Complex I-20kD;
Short=CI-20kD; Flags: Precursor
gi|562282|emb|CAA57725.1| PSST subunit of NADH: ubiquinone oxidoreductase [Brassica oleracea]
Length = 215
Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats.
Identities = 115/179 (64%), Positives = 131/179 (73%), Gaps = 1/179 (0%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITH-KGFLVTSVDQLVTWARTGSLMWMTFGL 62
T++ + + S ++ F+++ VD L+ WAR GS+ MTFGL
Sbjct: 29 TSLPALSPATTPTSYTRPGPPSTSAPPPGLSKTAEFVISKVDDLMNWARRGSIWPMTFGL 88
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+
Sbjct: 89 ACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRW 148
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R
Sbjct: 149 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRK 207
>gi|145589233|ref|YP_001155830.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|171463527|ref|YP_001797640.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|218528004|sp|B1XUJ9|NUOB_POLNS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528005|sp|A4SXQ2|NUOB_POLSQ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|145047639|gb|ABP34266.1| NADH dehydrogenase subunit B [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|171193065|gb|ACB44026.1| NADH-quinone oxidoreductase, B subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 160
Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 124/149 (83%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ DQL+ W R GSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 KEGFVTTTADQLINWTRNGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYH SYSVVRGCDRIVPVDI
Sbjct: 68 LMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHNSYSVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYGI+ LQ KI R +
Sbjct: 128 YVPGCPPTAEALIYGIIQLQSKIARTSTI 156
>gi|114321118|ref|YP_742801.1| NADH-quinone oxidoreductase, B subunit [Alkalilimnicola ehrlichii
MLHE-1]
gi|122311303|sp|Q0A776|NUOB_ALHEH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|114227512|gb|ABI57311.1| NADH dehydrogenase subunit B [Alkalilimnicola ehrlichii MLHE-1]
Length = 158
Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats.
Identities = 116/153 (75%), Positives = 130/153 (84%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ KGF+ TS D+++ WARTGS+ MTFGLACCAVEMMQA RYDL+RFG R SP
Sbjct: 4 EGLLEKGFVTTSADKVINWARTGSMWPMTFGLACCAVEMMQAGAARYDLDRFGIIFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDR+V
Sbjct: 64 RQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRVV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEALI+GI+ LQKKIR +
Sbjct: 124 PVDVYVPGCPPTAEALIWGIMQLQKKIRTTNTI 156
>gi|325983288|ref|YP_004295690.1| NADH-quinone oxidoreductase, B subunit [Nitrosomonas sp. AL212]
gi|325532807|gb|ADZ27528.1| NADH-quinone oxidoreductase, B subunit [Nitrosomonas sp. AL212]
Length = 158
Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats.
Identities = 113/149 (75%), Positives = 125/149 (83%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS+D ++ W RTGS+ MTFGLACCAVEMM+ RYDL+RFG R SPRQSD
Sbjct: 8 EKGFITTSLDSIINWGRTGSMWPMTFGLACCAVEMMETGASRYDLDRFGIVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KI R +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKINRTNTI 156
>gi|58381050|ref|XP_310968.2| AGAP000170-PA [Anopheles gambiae str. PEST]
gi|55243649|gb|EAA06474.3| AGAP000170-PA [Anopheles gambiae str. PEST]
Length = 207
Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats.
Identities = 107/145 (73%), Positives = 127/145 (87%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
V +D ++ W R GS+ +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+IVA
Sbjct: 58 VARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVA 117
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC
Sbjct: 118 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 177
Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
PPTAEAL+YG+L LQKK++R+ ++
Sbjct: 178 PPTAEALLYGVLQLQKKVKRMKTLQ 202
>gi|300703643|ref|YP_003745245.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
CFBP2957]
gi|299071306|emb|CBJ42624.1| NADH-quinone oxidoreductase subunit B [Ralstonia solanacearum
CFBP2957]
Length = 160
Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
++GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 NEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYG++ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALIYGVIQLQAKIRRTNTI 156
>gi|121714236|ref|XP_001274729.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
clavatus NRRL 1]
gi|119402882|gb|EAW13303.1| NADH-ubiquinone oxidoreductase subunit B, putative [Aspergillus
clavatus NRRL 1]
Length = 225
Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats.
Identities = 104/165 (63%), Positives = 125/165 (75%), Gaps = 1/165 (0%)
Query: 21 KVDADFSRISSEITHK-GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ F E K ++T+ D L+ WAR GSL + FGLACC VEMM ASMPRYD
Sbjct: 56 SLPTSFGHSKEENAGKLHHILTTTDALINWARQGSLWPLAFGLACCGVEMMAASMPRYDQ 115
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
+R G RASPRQ+DVMIVAGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYYH+S
Sbjct: 116 DRQGIIFRASPRQADVMIVAGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYHHS 175
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSVVRG DR+VPVDIYVPGCPPT EAL+Y + LQ+K+R +
Sbjct: 176 YSVVRGVDRLVPVDIYVPGCPPTPEALLYAVFQLQRKMRGTKVTR 220
>gi|302345400|ref|YP_003813753.1| NADH-quinone oxidoreductase, B subunit [Prevotella melaninogenica
ATCC 25845]
gi|302149419|gb|ADK95681.1| NADH-quinone oxidoreductase, B subunit [Prevotella melaninogenica
ATCC 25845]
Length = 305
Score = 230 bits (586), Expect = 7e-59, Method: Composition-based stats.
Identities = 80/164 (48%), Positives = 115/164 (70%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + S+++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD
Sbjct: 17 KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA GG +
Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVKVEK 180
>gi|226939457|ref|YP_002794530.1| NuoB2 [Laribacter hongkongensis HLHK9]
gi|254767794|sp|C1DCA4|NUOB_LARHH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|226714383|gb|ACO73521.1| NuoB2 [Laribacter hongkongensis HLHK9]
Length = 158
Score = 230 bits (586), Expect = 8e-59, Method: Composition-based stats.
Identities = 112/149 (75%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS D+++ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 EKGFITTSADKVLNWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 LMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIKRTCTI 156
>gi|288803376|ref|ZP_06408809.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella
melaninogenica D18]
gi|288334196|gb|EFC72638.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella
melaninogenica D18]
Length = 308
Score = 230 bits (586), Expect = 8e-59, Method: Composition-based stats.
Identities = 80/164 (48%), Positives = 115/164 (70%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + S+++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD
Sbjct: 17 KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YDQM EP+YVI++G CA GG +
Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDQMAEPKYVIAVGGCAISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVKVEK 180
>gi|331212725|ref|XP_003307632.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309298035|gb|EFP74626.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 261
Score = 230 bits (586), Expect = 8e-59, Method: Composition-based stats.
Identities = 112/174 (64%), Positives = 136/174 (78%)
Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
+ + L ++ +++ ++++++D++V WAR GS+ MTFGLACCAVE
Sbjct: 81 NTSAYSPAFGLAMQGSNSLDLATPRNGAEYVISTIDKIVNWARQGSIWPMTFGLACCAVE 140
Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
MM + RYD +RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGS
Sbjct: 141 MMHMAAARYDQDRFGIIFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGS 200
Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR
Sbjct: 201 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGLLQLQRKMRRTRK 254
>gi|116782796|gb|ABK22662.1| unknown [Picea sitchensis]
Length = 205
Score = 230 bits (586), Expect = 9e-59, Method: Composition-based stats.
Identities = 117/179 (65%), Positives = 131/179 (73%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
TV S SL + ++++ +D LV WAR GS+ MTFGLAC
Sbjct: 21 TVAPTKAEAAGSSSLSAQTPYNPSATGLSKPAEYVISKIDALVNWARKGSIWPMTFGLAC 80
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VI
Sbjct: 81 CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 140
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R ++
Sbjct: 141 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIHRRKDL 199
>gi|29841262|gb|AAP06294.1| similar to probable NADH-ubiquinone oxidoreductase 20 kDa subunit
precursor; complex I-20kC; CI-20KD [Schistosoma
japonicum]
gi|226470044|emb|CAX70303.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma
japonicum]
Length = 207
Score = 230 bits (586), Expect = 9e-59, Method: Composition-based stats.
Identities = 104/181 (57%), Positives = 133/181 (73%), Gaps = 1/181 (0%)
Query: 5 TVNQKIISGQSSCSLEKVD-ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
+ +Q + E + +S F++T +D L WAR S+ +TFGLA
Sbjct: 22 STSQPSEPSKVDNPDESIPYKPYSPFPKPQGKLDFVLTRLDDLANWARKNSIYPLTFGLA 81
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM + PRYD++R+G RASPRQ+D+MIV+GT+TNKMA ALRR+YDQM P++V
Sbjct: 82 CCAVEMMHIAGPRYDMDRYGVVFRASPRQADLMIVSGTVTNKMAPALRRIYDQMTHPKWV 141
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
ISMGSCANGGGYYHYSYSV+RGCDR++PVDIYVPGCPP+AEAL+Y IL LQKKI+ +V
Sbjct: 142 ISMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVPGCPPSAEALMYSILQLQKKIKSEKHV 201
Query: 184 K 184
+
Sbjct: 202 Q 202
>gi|217970157|ref|YP_002355391.1| NADH dehydrogenase subunit B [Thauera sp. MZ1T]
gi|217507484|gb|ACK54495.1| NADH-quinone oxidoreductase, B subunit [Thauera sp. MZ1T]
Length = 158
Score = 229 bits (585), Expect = 9e-59, Method: Composition-based stats.
Identities = 113/149 (75%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ TS+D ++ W RTGSL MTFGLACCAVEM+ A RYDL+RFG R SPRQSD
Sbjct: 8 REGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 LMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYGIL LQ KI+R +
Sbjct: 128 YVPGCPPTAEALIYGILQLQNKIKRTNTI 156
>gi|77166022|ref|YP_344547.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707]
gi|254436391|ref|ZP_05049897.1| NADH-quinone oxidoreductase, B subunit subfamily [Nitrosococcus
oceani AFC27]
gi|300113266|ref|YP_003759841.1| NADH-quinone oxidoreductase subunit B [Nitrosococcus watsonii
C-113]
gi|123593538|sp|Q3J829|NUOB2_NITOC RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|76884336|gb|ABA59017.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707]
gi|207088081|gb|EDZ65354.1| NADH-quinone oxidoreductase, B subunit subfamily [Nitrosococcus
oceani AFC27]
gi|299539203|gb|ADJ27520.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus watsonii
C-113]
Length = 158
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 113/149 (75%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+G + T+ D+L+ WARTGSL MTFGLACCAVEMM A RYD++RFG R SPRQSD
Sbjct: 8 ERGVVTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDMDRFGVIFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 68 VMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIKRNYTI 156
>gi|126002095|ref|XP_001352261.1| GA21592 [Drosophila pseudoobscura pseudoobscura]
gi|195175510|ref|XP_002028490.1| GL16625 [Drosophila persimilis]
gi|54640648|gb|EAL29409.1| GA21592 [Drosophila pseudoobscura pseudoobscura]
gi|194103687|gb|EDW25730.1| GL16625 [Drosophila persimilis]
Length = 220
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 106/155 (68%), Positives = 131/155 (84%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
+ + + + + +D L+ W R GS+ +TFGLACCAVEMM + PRYD++R+G RAS
Sbjct: 61 TKQASVAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRAS 120
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+DV+IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 121 PRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 180
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PVDIYVPGCPPTAEAL+YG+L LQKK++R+ ++
Sbjct: 181 IPVDIYVPGCPPTAEALMYGVLQLQKKVKRMKTLQ 215
>gi|82702221|ref|YP_411787.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196]
gi|123544732|sp|Q2YA26|NUOB2_NITMU RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|82410286|gb|ABB74395.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196]
Length = 158
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 115/154 (74%), Positives = 129/154 (83%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
++ + KGF+ TS+D ++ W RTGS+ MTFGLACCAVEMMQA RYDL+RFG R S
Sbjct: 3 TNGVMEKGFVTTSLDSVINWGRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPS 62
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 63 PRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVDIYVPGCPPTAEAL+YGI+ LQ KI R +
Sbjct: 123 VPVDIYVPGCPPTAEALLYGIIQLQNKIHRTNTI 156
>gi|253996972|ref|YP_003049036.1| NADH dehydrogenase subunit B [Methylotenera mobilis JLW8]
gi|253983651|gb|ACT48509.1| NADH-quinone oxidoreductase, B subunit [Methylotenera mobilis JLW8]
Length = 158
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 111/149 (74%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ T++D ++ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 EKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIKRTNTI 156
>gi|78067045|ref|YP_369814.1| NADH dehydrogenase subunit B [Burkholderia sp. 383]
gi|107023187|ref|YP_621514.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia AU 1054]
gi|115352337|ref|YP_774176.1| NADH dehydrogenase subunit B [Burkholderia ambifaria AMMD]
gi|116690269|ref|YP_835892.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia HI2424]
gi|134296432|ref|YP_001120167.1| NADH dehydrogenase subunit B [Burkholderia vietnamiensis G4]
gi|161524205|ref|YP_001579217.1| NADH dehydrogenase subunit B [Burkholderia multivorans ATCC 17616]
gi|167585972|ref|ZP_02378360.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ubonensis Bu]
gi|170698110|ref|ZP_02889190.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
IOP40-10]
gi|170733608|ref|YP_001765555.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia MC0-3]
gi|171316304|ref|ZP_02905525.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
MEX-5]
gi|172061208|ref|YP_001808860.1| NADH dehydrogenase subunit B [Burkholderia ambifaria MC40-6]
gi|221211736|ref|ZP_03584715.1| NADH-quinone oxidoreductase subunit b (nadh dehydrogenase i subunit
b) (ndh-1 subunit b) [Burkholderia multivorans CGD1]
gi|122322642|sp|Q0BDD1|NUOB_BURCM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|123244856|sp|Q1BV14|NUOB_BURCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|123568005|sp|Q39EE6|NUOB_BURS3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218527979|sp|B1YTQ6|NUOB_BURA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218527980|sp|B1JVP0|NUOB_BURCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218527981|sp|A0K922|NUOB_BURCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218527982|sp|A4JGC9|NUOB_BURVG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528023|sp|A9AFY8|NUOB_BURM1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528071|sp|B4E5M1|NUOB_BURCJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|77967790|gb|ABB09170.1| NADH dehydrogenase subunit B [Burkholderia sp. 383]
gi|105893376|gb|ABF76541.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia AU 1054]
gi|115282325|gb|ABI87842.1| NADH dehydrogenase subunit B [Burkholderia ambifaria AMMD]
gi|116648358|gb|ABK08999.1| NADH dehydrogenase subunit B [Burkholderia cenocepacia HI2424]
gi|134139589|gb|ABO55332.1| NADH dehydrogenase subunit B [Burkholderia vietnamiensis G4]
gi|160341634|gb|ABX14720.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
ATCC 17616]
gi|169816850|gb|ACA91433.1| NADH-quinone oxidoreductase, B subunit [Burkholderia cenocepacia
MC0-3]
gi|170136968|gb|EDT05216.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
IOP40-10]
gi|171098530|gb|EDT43331.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
MEX-5]
gi|171993725|gb|ACB64644.1| NADH-quinone oxidoreductase, B subunit [Burkholderia ambifaria
MC40-6]
gi|221169097|gb|EEE01565.1| NADH-quinone oxidoreductase subunit b (nadh dehydrogenase i subunit
b) (ndh-1 subunit b) [Burkholderia multivorans CGD1]
gi|325520398|gb|EGC99516.1| NADH dehydrogenase subunit B [Burkholderia sp. TJI49]
Length = 159
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 KEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALVYGVIQLQAKIRRTNTI 156
>gi|195626816|gb|ACG35238.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays]
Length = 200
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 114/145 (78%), Positives = 123/145 (84%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD M
Sbjct: 48 EFVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCM 107
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 108 IVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 167
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPPTAEAL+YG+L LQKKI R
Sbjct: 168 PGCPPTAEALLYGVLQLQKKINRRK 192
>gi|212721050|ref|NP_001131270.1| hypothetical protein LOC100192583 [Zea mays]
gi|194691040|gb|ACF79604.1| unknown [Zea mays]
gi|195641534|gb|ACG40235.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays]
Length = 202
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 114/145 (78%), Positives = 123/145 (84%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD M
Sbjct: 50 EFVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCM 109
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 110 IVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 169
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPPTAEAL+YG+L LQKKI R
Sbjct: 170 PGCPPTAEALLYGVLQLQKKINRRK 194
>gi|189351038|ref|YP_001946666.1| NADH dehydrogenase subunit B [Burkholderia multivorans ATCC 17616]
gi|189335060|dbj|BAG44130.1| NADH dehydrogenase I chain B [Burkholderia multivorans ATCC 17616]
Length = 173
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 22 KEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 81
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 82 VMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 141
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 142 YVPGCPPTAEALVYGVIQLQAKIRRTNTI 170
>gi|148361101|ref|YP_001252308.1| NADH dehydrogenase I subunit B [Legionella pneumophila str. Corby]
gi|218527993|sp|A5IHW2|NUOB_LEGPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|148282874|gb|ABQ56962.1| NADH dehydrogenase I, B subunit [Legionella pneumophila str. Corby]
Length = 158
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 115/153 (75%), Positives = 130/153 (84%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
E+ K F +T+V++LV WAR+GS+ MTFGLACCAVEMM RYDL+RFG R SPR
Sbjct: 5 ELEKKVFELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPR 64
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
QSDVMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 65 QSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVP 124
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VD+YVPGCPPTAEAL+YGI+ LQ KIRR ++
Sbjct: 125 VDVYVPGCPPTAEALLYGIIQLQNKIRRKPVLE 157
>gi|242058541|ref|XP_002458416.1| hypothetical protein SORBIDRAFT_03g033090 [Sorghum bicolor]
gi|241930391|gb|EES03536.1| hypothetical protein SORBIDRAFT_03g033090 [Sorghum bicolor]
Length = 200
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 114/145 (78%), Positives = 123/145 (84%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD M
Sbjct: 48 EFVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCM 107
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 108 IVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 167
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPPTAEAL+YG+L LQKKI R
Sbjct: 168 PGCPPTAEALLYGVLQLQKKINRRK 192
>gi|303316328|ref|XP_003068166.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240107847|gb|EER26021.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320037899|gb|EFW19835.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coccidioides
posadasii str. Silveira]
Length = 227
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 118/177 (66%), Positives = 134/177 (75%), Gaps = 3/177 (1%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
QSS + K D + S+ +G F +T++DQ+ WAR SL MTFGLACCAV
Sbjct: 46 TQTQSSMTQTKKDRREVPLPSQQKKEGAMQFALTTLDQVANWARQSSLWPMTFGLACCAV 105
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
EMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMG
Sbjct: 106 EMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMG 165
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R +
Sbjct: 166 SCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTQITR 222
>gi|298370383|ref|ZP_06981699.1| NADH dehydrogenase (ubiquinone), B subunit [Neisseria sp. oral
taxon 014 str. F0314]
gi|298281843|gb|EFI23332.1| NADH dehydrogenase (ubiquinone), B subunit [Neisseria sp. oral
taxon 014 str. F0314]
Length = 197
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 109/149 (73%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ+D
Sbjct: 45 KKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQAD 104
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPVD+
Sbjct: 105 LMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDV 164
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYG++ LQ+KI+R +
Sbjct: 165 YVPGCPPTAEALIYGLMQLQQKIKRTSTI 193
>gi|226470042|emb|CAX70302.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma
japonicum]
gi|226489138|emb|CAX74918.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma
japonicum]
Length = 207
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 104/181 (57%), Positives = 133/181 (73%), Gaps = 1/181 (0%)
Query: 5 TVNQKIISGQSSCSLEKVD-ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
+ +Q + E + +S F++T +D L WAR S+ +TFGLA
Sbjct: 22 STSQPSEPSKVDNPDETIPYKPYSPFPKPQGKLDFVLTRLDDLANWARKNSIYPLTFGLA 81
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM + PRYD++R+G RASPRQ+D+MIV+GT+TNKMA ALRR+YDQM P++V
Sbjct: 82 CCAVEMMHIAGPRYDMDRYGVVFRASPRQADLMIVSGTVTNKMAPALRRIYDQMTHPKWV 141
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
ISMGSCANGGGYYHYSYSV+RGCDR++PVDIYVPGCPP+AEAL+Y IL LQKKI+ +V
Sbjct: 142 ISMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVPGCPPSAEALMYSILQLQKKIKSEKHV 201
Query: 184 K 184
+
Sbjct: 202 Q 202
>gi|168032288|ref|XP_001768651.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680150|gb|EDQ66589.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 201
Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats.
Identities = 114/147 (77%), Positives = 126/147 (85%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD M
Sbjct: 49 EFVLSKVDALMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCM 108
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 109 IVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 168
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183
PGCPPTAEAL+YG+L LQKKI R +V
Sbjct: 169 PGCPPTAEALLYGLLQLQKKINRRKDV 195
>gi|260592325|ref|ZP_05857783.1| NADH dehydrogenase I, B subunit [Prevotella veroralis F0319]
gi|260535712|gb|EEX18329.1| NADH dehydrogenase I, B subunit [Prevotella veroralis F0319]
Length = 295
Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats.
Identities = 79/164 (48%), Positives = 115/164 (70%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + S+++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD
Sbjct: 17 KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA GG +
Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVKVEK 180
>gi|253998384|ref|YP_003050447.1| NADH dehydrogenase subunit B [Methylovorus sp. SIP3-4]
gi|313200460|ref|YP_004039118.1| NADH-quinone oxidoreductase subunit B [Methylovorus sp. MP688]
gi|253985063|gb|ACT49920.1| NADH-quinone oxidoreductase, B subunit [Methylovorus sp. SIP3-4]
gi|312439776|gb|ADQ83882.1| NADH-quinone oxidoreductase, B subunit [Methylovorus sp. MP688]
Length = 158
Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats.
Identities = 111/149 (74%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ T++D ++ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 EKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIKRTNTI 156
>gi|288926087|ref|ZP_06420015.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Prevotella buccae D17]
gi|288337127|gb|EFC75485.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Prevotella buccae D17]
Length = 287
Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats.
Identities = 76/164 (46%), Positives = 113/164 (68%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + +++ E+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD
Sbjct: 17 KDNGTLEKMADELNEGGVNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMATGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA GG +
Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY VVRG D I+PVD+Y+PGCPP EA++YG++ LQ+K++
Sbjct: 137 SSYHVVRGIDEIIPVDVYIPGCPPRPEAIMYGMMQLQRKVKVEK 180
>gi|145256397|ref|XP_001401369.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
513.88]
gi|134058270|emb|CAK38461.1| unnamed protein product [Aspergillus niger]
Length = 232
Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats.
Identities = 118/183 (64%), Positives = 139/183 (75%), Gaps = 2/183 (1%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFG 61
T + Q+ SGQ+ + KV + S E +++T++DQ+ WAR SL MTFG
Sbjct: 45 TAIEQRGQSGQALTASGKVRKEVPLPSQEKKEGAMQYVLTTLDQVANWARQSSLWPMTFG 104
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 105 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 164
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R
Sbjct: 165 WVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTR 224
Query: 182 NVK 184
+
Sbjct: 225 ITR 227
>gi|330817791|ref|YP_004361496.1| NADH dehydrogenase subunit B [Burkholderia gladioli BSR3]
gi|327370184|gb|AEA61540.1| NADH dehydrogenase subunit B [Burkholderia gladioli BSR3]
Length = 159
Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats.
Identities = 113/149 (75%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 KEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALRRVY+QM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLCNKMAPALRRVYEQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALVYGVIQLQAKIRRTSTI 156
>gi|322711383|gb|EFZ02956.1| NADH-ubiquinone oxidoreductase 20 kD subunit [Metarhizium
anisopliae ARSEF 23]
Length = 316
Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats.
Identities = 114/181 (62%), Positives = 133/181 (73%), Gaps = 3/181 (1%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLA 63
+ ++ + S + SE KG + +T++D + WAR SL MTFGLA
Sbjct: 131 DASSLTPHGAGSSLAKPRKEVLLPSEEGTKGVVQYALTTLDVIANWARQSSLWPMTFGLA 190
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+V
Sbjct: 191 CCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWV 250
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R
Sbjct: 251 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNTKIT 310
Query: 184 K 184
+
Sbjct: 311 R 311
>gi|325857136|ref|ZP_08172426.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola CRIS
18C-A]
gi|327313379|ref|YP_004328816.1| NADH-quinone oxidoreductase subunit B [Prevotella denticola F0289]
gi|325483199|gb|EGC86177.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola CRIS
18C-A]
gi|326945576|gb|AEA21461.1| NADH-quinone oxidoreductase, B subunit [Prevotella denticola F0289]
Length = 297
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 77/164 (46%), Positives = 114/164 (69%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + +++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD
Sbjct: 17 KDNDTLGKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA GG +
Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVKVEK 180
>gi|255067282|ref|ZP_05319137.1| NADH dehydrogenase, B subunit [Neisseria sicca ATCC 29256]
gi|261364348|ref|ZP_05977231.1| NADH dehydrogenase, B subunit [Neisseria mucosa ATCC 25996]
gi|261378539|ref|ZP_05983112.1| NADH dehydrogenase, B subunit [Neisseria cinerea ATCC 14685]
gi|255048433|gb|EET43897.1| NADH dehydrogenase, B subunit [Neisseria sicca ATCC 29256]
gi|269145089|gb|EEZ71507.1| NADH dehydrogenase, B subunit [Neisseria cinerea ATCC 14685]
gi|288567612|gb|EFC89172.1| NADH dehydrogenase, B subunit [Neisseria mucosa ATCC 25996]
Length = 160
Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats.
Identities = 109/149 (73%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ+D
Sbjct: 8 KKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQAD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPVD+
Sbjct: 68 LMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYG++ LQ+KI+R +
Sbjct: 128 YVPGCPPTAEALIYGLMQLQQKIKRTSTI 156
>gi|119897688|ref|YP_932901.1| NADH dehydrogenase subunit B [Azoarcus sp. BH72]
gi|218527941|sp|A1K5A9|NUOB1_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|119670101|emb|CAL94014.1| putative NADH-ubiquinone oxidoreductase chain B [Azoarcus sp. BH72]
Length = 158
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 111/149 (74%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ TS+D ++ W RTGSL MTFGLACCAVEM+ A RYDL+RFG R SPRQSD
Sbjct: 8 REGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 LMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIKRTNTI 156
>gi|297538955|ref|YP_003674724.1| NADH-quinone oxidoreductase subunit B [Methylotenera sp. 301]
gi|297258302|gb|ADI30147.1| NADH-quinone oxidoreductase, B subunit [Methylotenera sp. 301]
Length = 158
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 111/153 (72%), Positives = 127/153 (83%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
I KGF+ T++D ++ + RTGS+ MTFGLACCAVEMM A RYDL+RFG R SP
Sbjct: 4 EGILEKGFVTTTLDTVINYTRTGSMWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRGSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIV
Sbjct: 64 RQSDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEAL+YGI+ LQ KI+R +
Sbjct: 124 PVDVYVPGCPPTAEALLYGIIQLQNKIKRTNTI 156
>gi|91776412|ref|YP_546168.1| NADH-quinone oxidoreductase, B subunit [Methylobacillus flagellatus
KT]
gi|123380391|sp|Q1GZL0|NUOB_METFK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|91710399|gb|ABE50327.1| NADH dehydrogenase subunit B [Methylobacillus flagellatus KT]
Length = 158
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 111/149 (74%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ T++D ++ + RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 EKGFVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIKRTNTI 156
>gi|121598483|ref|YP_992470.1| NADH dehydrogenase subunit B [Burkholderia mallei SAVP1]
gi|124385700|ref|YP_001026727.1| NADH dehydrogenase subunit B [Burkholderia mallei NCTC 10229]
gi|126439724|ref|YP_001058339.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 668]
gi|126450627|ref|YP_001079988.1| NADH dehydrogenase subunit B [Burkholderia mallei NCTC 10247]
gi|126451839|ref|YP_001065578.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1106a]
gi|167562178|ref|ZP_02355094.1| NADH dehydrogenase subunit B [Burkholderia oklahomensis EO147]
gi|167569423|ref|ZP_02362297.1| NADH dehydrogenase subunit B [Burkholderia oklahomensis C6786]
gi|167580423|ref|ZP_02373297.1| NADH dehydrogenase subunit B [Burkholderia thailandensis TXDOH]
gi|167618532|ref|ZP_02387163.1| NADH dehydrogenase subunit B [Burkholderia thailandensis Bt4]
gi|167718844|ref|ZP_02402080.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei DM98]
gi|167737853|ref|ZP_02410627.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 14]
gi|167815037|ref|ZP_02446717.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 91]
gi|167823453|ref|ZP_02454924.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 9]
gi|167836050|ref|ZP_02462933.1| NADH dehydrogenase subunit B [Burkholderia thailandensis MSMB43]
gi|167845005|ref|ZP_02470513.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei B7210]
gi|167893546|ref|ZP_02480948.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 7894]
gi|167901992|ref|ZP_02489197.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei NCTC 13177]
gi|167910228|ref|ZP_02497319.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 112]
gi|167918261|ref|ZP_02505352.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei BCC215]
gi|254175674|ref|ZP_04882334.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
10399]
gi|254181186|ref|ZP_04887783.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
1655]
gi|254190549|ref|ZP_04897056.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|254195108|ref|ZP_04901537.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
S13]
gi|254202109|ref|ZP_04908472.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH]
gi|254258086|ref|ZP_04949140.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
1710a]
gi|254298534|ref|ZP_04965986.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
406e]
gi|254359861|ref|ZP_04976131.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei
2002721280]
gi|257139689|ref|ZP_05587951.1| NADH dehydrogenase subunit B [Burkholderia thailandensis E264]
gi|218527942|sp|A3MIA2|NUOB1_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|218527943|sp|A2S458|NUOB1_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|218527965|sp|A1V2L7|NUOB1_BURMS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|218527966|sp|A3NTA7|NUOB1_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|218527967|sp|A3N7L8|NUOB1_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|218528060|sp|Q62IN6|NUOB1_BURMA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|218528063|sp|Q2SZN4|NUOB_BURTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528080|sp|Q63VN2|NUOB1_BURPS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|218528081|sp|Q3JUA8|NUOB1_BURP1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|121227293|gb|ABM49811.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1]
gi|124293720|gb|ABN02989.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
10229]
gi|126219217|gb|ABN82723.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
668]
gi|126225481|gb|ABN89021.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
1106a]
gi|126243497|gb|ABO06590.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
10247]
gi|147746356|gb|EDK53433.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH]
gi|148029101|gb|EDK87006.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei
2002721280]
gi|157808426|gb|EDO85596.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
406e]
gi|157938224|gb|EDO93894.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|160696718|gb|EDP86688.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
10399]
gi|169651856|gb|EDS84549.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
S13]
gi|184211724|gb|EDU08767.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
1655]
gi|254216775|gb|EET06159.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
1710a]
Length = 159
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 KEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALVYGVIQLQAKIRRTSTI 156
>gi|66770743|gb|AAY54683.1| IP08160p [Drosophila melanogaster]
Length = 213
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 107/144 (74%), Positives = 125/144 (86%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAG
Sbjct: 65 ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 124
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TLTNKMA A R++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP
Sbjct: 125 TLTNKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 184
Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
PTAEAL+YGIL LQKK++R+ ++
Sbjct: 185 PTAEALMYGILQLQKKVKRMRTLQ 208
>gi|226499630|ref|NP_001151765.1| LOC100285400 [Zea mays]
gi|194708402|gb|ACF88285.1| unknown [Zea mays]
gi|195621542|gb|ACG32601.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays]
gi|195649579|gb|ACG44257.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Zea mays]
Length = 200
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 114/145 (78%), Positives = 123/145 (84%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD M
Sbjct: 48 EFVVSKVDDLMNWARKGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCM 107
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 108 IVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 167
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPPTAEAL+YG+L LQKKI R
Sbjct: 168 PGCPPTAEALLYGVLQLQKKINRRK 192
>gi|91782613|ref|YP_557819.1| NADH dehydrogenase subunit B [Burkholderia xenovorans LB400]
gi|170696398|ref|ZP_02887527.1| NADH-quinone oxidoreductase, B subunit [Burkholderia graminis
C4D1M]
gi|186476763|ref|YP_001858233.1| NADH dehydrogenase subunit B [Burkholderia phymatum STM815]
gi|187923341|ref|YP_001894983.1| NADH dehydrogenase subunit B [Burkholderia phytofirmans PsJN]
gi|209518514|ref|ZP_03267335.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. H160]
gi|295676038|ref|YP_003604562.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1002]
gi|296160630|ref|ZP_06843445.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. Ch1-1]
gi|307730339|ref|YP_003907563.1| NADH-quinone oxidoreductase subunit B [Burkholderia sp. CCGE1003]
gi|323525437|ref|YP_004227590.1| NADH-quinone oxidoreductase subunit B [Burkholderia sp. CCGE1001]
gi|123358972|sp|Q142H2|NUOB_BURXL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528024|sp|B2JDM7|NUOB_BURP8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218528025|sp|B2T2E8|NUOB_BURPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|91686567|gb|ABE29767.1| NADH dehydrogenase subunit B [Burkholderia xenovorans LB400]
gi|170138726|gb|EDT06925.1| NADH-quinone oxidoreductase, B subunit [Burkholderia graminis
C4D1M]
gi|184193222|gb|ACC71187.1| NADH-quinone oxidoreductase, B subunit [Burkholderia phymatum
STM815]
gi|187714535|gb|ACD15759.1| NADH-quinone oxidoreductase, B subunit [Burkholderia phytofirmans
PsJN]
gi|209501059|gb|EEA01094.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. H160]
gi|295435881|gb|ADG15051.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1002]
gi|295889156|gb|EFG68959.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. Ch1-1]
gi|307584874|gb|ADN58272.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1003]
gi|323382439|gb|ADX54530.1| NADH-quinone oxidoreductase, B subunit [Burkholderia sp. CCGE1001]
Length = 159
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 113/149 (75%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 KEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALVYGVIQLQAKIRRTNTI 156
>gi|221199657|ref|ZP_03572701.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
CGD2M]
gi|221205443|ref|ZP_03578458.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
CGD2]
gi|221174281|gb|EEE06713.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
CGD2]
gi|221180942|gb|EEE13345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia multivorans
CGD2M]
Length = 153
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 2 KEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 61
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 62 VMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 121
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 122 YVPGCPPTAEALVYGVIQLQAKIRRTNTI 150
>gi|156048917|ref|XP_001590425.1| NADH-ubiquinone oxidoreductase [Sclerotinia sclerotiorum 1980]
gi|154692564|gb|EDN92302.1| NADH-ubiquinone oxidoreductase [Sclerotinia sclerotiorum 1980
UF-70]
Length = 235
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 113/159 (71%), Positives = 129/159 (81%), Gaps = 3/159 (1%)
Query: 29 ISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
+ S+ KG + +T++DQ+ WAR GSL MTFGLACCAVEMM S PRYD +R G
Sbjct: 72 LPSQEGKKGVMQYALTTLDQIANWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGII 131
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+V+SMGSCANGGGYYHYSYSV RG
Sbjct: 132 FRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVVSMGSCANGGGYYHYSYSVTRG 191
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
CDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R +
Sbjct: 192 CDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTKITR 230
>gi|171058186|ref|YP_001790535.1| NADH dehydrogenase subunit B [Leptothrix cholodnii SP-6]
gi|218527994|sp|B1Y828|NUOB_LEPCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|170775631|gb|ACB33770.1| NADH-quinone oxidoreductase, B subunit [Leptothrix cholodnii SP-6]
Length = 158
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 112/149 (75%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ TSVD L+ W++TGSL MTFGLACCAVEMM A RYD++RFG R SPRQSD
Sbjct: 8 KEGFVTTSVDTLINWSKTGSLWPMTFGLACCAVEMMHAGASRYDIDRFGMLFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPVD+
Sbjct: 68 LMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGIL LQ KIRR +
Sbjct: 128 YVPGCPPTAEALLYGILQLQAKIRRENTI 156
>gi|114330926|ref|YP_747148.1| NADH dehydrogenase subunit B [Nitrosomonas eutropha C91]
gi|122314158|sp|Q0AHJ9|NUOB_NITEC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|114307940|gb|ABI59183.1| NADH dehydrogenase subunit B [Nitrosomonas eutropha C91]
Length = 158
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 125/149 (83%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ T++D L+ W RTGS+ MTFGLACCAVEMMQ RYDL+RFG R SPRQSD
Sbjct: 8 DKGFVTTNLDSLINWGRTGSMWPMTFGLACCAVEMMQTGASRYDLDRFGIVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KI R +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIWRTNTI 156
>gi|56478177|ref|YP_159766.1| NADH dehydrogenase subunit B [Aromatoleum aromaticum EbN1]
gi|81356986|sp|Q5P1E9|NUOB_AZOSE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|56314220|emb|CAI08865.1| NADH dehydrogenase I, chain B [Aromatoleum aromaticum EbN1]
Length = 158
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 111/149 (74%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ TS+D ++ W RTGSL MTFGLACCAVEM+ A RYDL+RFG R SPRQSD
Sbjct: 8 REGFVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCARYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 LMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQNKIKRTNTI 156
>gi|226372670|gb|ACO51960.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
[Rana catesbeiana]
Length = 217
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 119/171 (69%), Positives = 135/171 (78%), Gaps = 6/171 (3%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
+++ ++ +SS V A S + S F+VT +D LV WAR SL MTFGLA
Sbjct: 38 NSISASLVRQKSSA----VPATKSSVPS--GKGEFIVTKLDDLVNWARRSSLWPMTFGLA 91
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV
Sbjct: 92 CCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYV 151
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ
Sbjct: 152 VSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQ 202
>gi|315608360|ref|ZP_07883349.1| NADH-quinone oxidoreductase subunit B [Prevotella buccae ATCC
33574]
gi|315249990|gb|EFU29990.1| NADH-quinone oxidoreductase subunit B [Prevotella buccae ATCC
33574]
Length = 287
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 76/164 (46%), Positives = 113/164 (68%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + +++ E+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD
Sbjct: 17 KDNGTLEKMADELNEGGVNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMATGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YV+++G CA GG +
Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVVAVGGCAVSGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY VVRG D I+PVD+Y+PGCPP EA++YG++ LQ+K++
Sbjct: 137 SSYHVVRGIDEIIPVDVYIPGCPPRPEAIMYGMMQLQRKVKVEK 180
>gi|194765258|ref|XP_001964744.1| GF23350 [Drosophila ananassae]
gi|190615016|gb|EDV30540.1| GF23350 [Drosophila ananassae]
Length = 211
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 110/148 (74%), Positives = 127/148 (85%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
+ V +D L+ W R GS+ MTFGLACCAVEMM + PRYD++R+G RASPRQ+D M
Sbjct: 59 EWTVARLDDLLNWGRKGSIWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADCM 118
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA A+R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 119 IVAGTLTNKMAPAMRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 178
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184
PGCPPTAEAL+YGIL LQKKI+R+ ++
Sbjct: 179 PGCPPTAEALMYGILQLQKKIKRMRTIQ 206
>gi|297604806|ref|NP_001056143.2| Os05g0533700 [Oryza sativa Japonica Group]
gi|255676519|dbj|BAF18057.2| Os05g0533700 [Oryza sativa Japonica Group]
Length = 154
Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats.
Identities = 112/145 (77%), Positives = 122/145 (84%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYD +RFG R SPRQSD M
Sbjct: 2 EFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQSDCM 61
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 62 IVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 121
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPPTAEAL+YG+L LQKKI R
Sbjct: 122 PGCPPTAEALLYGVLQLQKKINRRR 146
>gi|325269277|ref|ZP_08135895.1| NADH dehydrogenase I subunit B [Prevotella multiformis DSM 16608]
gi|324988404|gb|EGC20369.1| NADH dehydrogenase I subunit B [Prevotella multiformis DSM 16608]
Length = 297
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 78/164 (47%), Positives = 115/164 (70%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + S+++SE+ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD
Sbjct: 17 KDNDTLSKMASELNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA GG +
Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY V+RG D I+PVD+Y+PGCPP EA++YG++ LQ+K++
Sbjct: 137 DSYHVMRGIDEIIPVDVYIPGCPPRPEAIVYGMMQLQRKVKIEK 180
>gi|320586540|gb|EFW99210.1| NADH-ubiquinone oxidoreductase subunit [Grosmannia clavigera
kw1407]
Length = 243
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 112/178 (62%), Positives = 135/178 (75%), Gaps = 3/178 (1%)
Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCA 66
+ + S+ + + + ++S+ K + +T++D + W R GS MTFGLACCA
Sbjct: 61 VAAPHSATGIARRERKEVPLASQEGTKSLVQYALTTLDIIANWGRQGSFWPMTFGLACCA 120
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
VEMM S PRYD +RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISM
Sbjct: 121 VEMMHLSTPRYDQDRFGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISM 180
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQ+K+R +
Sbjct: 181 GSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTRTSR 238
>gi|24651058|ref|NP_651698.1| CG2014 [Drosophila melanogaster]
gi|7301791|gb|AAF56901.1| CG2014 [Drosophila melanogaster]
Length = 212
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 107/144 (74%), Positives = 125/144 (86%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAG
Sbjct: 64 ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 123
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TLTNKMA A R++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP
Sbjct: 124 TLTNKMAPAFRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 183
Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
PTAEAL+YGIL LQKK++R+ ++
Sbjct: 184 PTAEALMYGILQLQKKVKRMRTLQ 207
>gi|317158068|ref|XP_001826792.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus
oryzae RIB40]
Length = 190
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 103/151 (68%), Positives = 121/151 (80%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
++T++DQLV WAR SL ++FGLACCAVEMMQ SMPRYD +R G RASPRQS
Sbjct: 35 NKAEHVLTTIDQLVNWARQSSLWPLSFGLACCAVEMMQVSMPRYDQDRLGIIFRASPRQS 94
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVM+VAGT+TNKM ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVVRG DRIVPVD
Sbjct: 95 DVMVVAGTVTNKMGPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRIVPVD 154
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+Y+PGCPPT EA + GI LQKK+R +
Sbjct: 155 VYIPGCPPTPEAFLCGIFQLQKKMRHTKVTR 185
>gi|114864804|gb|ABI83769.1| NADH-ubiquinone oxidoreductase [Anopheles funestus]
Length = 207
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 107/144 (74%), Positives = 126/144 (87%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
V +D ++ W R GS+ +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+IVA
Sbjct: 58 VARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVA 117
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC
Sbjct: 118 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 177
Query: 160 PPTAEALIYGILLLQKKIRRVGNV 183
PPTAEAL+YG+L LQKK++R+ +
Sbjct: 178 PPTAEALLYGVLQLQKKVKRMKTL 201
>gi|15676166|ref|NP_273298.1| NADH dehydrogenase subunit B [Neisseria meningitidis MC58]
gi|121634114|ref|YP_974359.1| NADH dehydrogenase subunit B [Neisseria meningitidis FAM18]
gi|194099646|ref|YP_002002777.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae NCCP11945]
gi|225077017|ref|ZP_03720216.1| hypothetical protein NEIFLAOT_02069 [Neisseria flavescens
NRL30031/H210]
gi|239999843|ref|ZP_04719767.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae 35/02]
gi|240015002|ref|ZP_04721915.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae DGI18]
gi|240081589|ref|ZP_04726132.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA19]
gi|240113871|ref|ZP_04728361.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae MS11]
gi|240116602|ref|ZP_04730664.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID18]
gi|240118826|ref|ZP_04732888.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID1]
gi|240122071|ref|ZP_04735033.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID24-1]
gi|240124365|ref|ZP_04737321.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae PID332]
gi|240126577|ref|ZP_04739463.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae SK-92-679]
gi|241760743|ref|ZP_04758835.1| NADH-quinone oxidoreductase, b subunit [Neisseria flavescens SK114]
gi|254494626|ref|ZP_05107797.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae 1291]
gi|254805716|ref|YP_003083937.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha14]
gi|260439637|ref|ZP_05793453.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae DGI2]
gi|261379579|ref|ZP_05984152.1| NADH dehydrogenase, B subunit [Neisseria subflava NJ9703]
gi|261400470|ref|ZP_05986595.1| NADH dehydrogenase, B subunit [Neisseria lactamica ATCC 23970]
gi|268595653|ref|ZP_06129820.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae 35/02]
gi|268597685|ref|ZP_06131852.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae FA19]
gi|268599937|ref|ZP_06134104.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae MS11]
gi|268602271|ref|ZP_06136438.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID18]
gi|268604537|ref|ZP_06138704.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID1]
gi|268682992|ref|ZP_06149854.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID332]
gi|268685157|ref|ZP_06152019.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-92-679]
gi|296313746|ref|ZP_06863687.1| NADH dehydrogenase, B subunit [Neisseria polysaccharea ATCC 43768]
gi|304389067|ref|ZP_07371111.1| NADH-quinone oxidoreductase subunit B [Neisseria meningitidis ATCC
13091]
gi|313669285|ref|YP_004049569.1| NADH dehydrogenase I chain B [Neisseria lactamica ST-640]
gi|319638815|ref|ZP_07993573.1| NADH dehydrogenase subunit I B [Neisseria mucosa C102]
gi|81785111|sp|Q9K1C2|NUOB_NEIMB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218527996|sp|B4RPI3|NUOB_NEIG2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218527998|sp|A1KRS3|NUOB_NEIMF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|7225464|gb|AAF40696.1| NADH dehydrogenase I, B subunit [Neisseria meningitidis MC58]
gi|120865820|emb|CAM09552.1| NADH dehydrogenase I chain B [Neisseria meningitidis FAM18]
gi|193934936|gb|ACF30760.1| NADH dehydrogenase I, B subunit [Neisseria gonorrhoeae NCCP11945]
gi|224951574|gb|EEG32783.1| hypothetical protein NEIFLAOT_02069 [Neisseria flavescens
NRL30031/H210]
gi|226513666|gb|EEH63011.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae 1291]
gi|241318924|gb|EER55450.1| NADH-quinone oxidoreductase, b subunit [Neisseria flavescens SK114]
gi|254669258|emb|CBA08154.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha14]
gi|261391774|emb|CAX49229.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B;
NDH-1, chain B) [Neisseria meningitidis 8013]
gi|268549042|gb|EEZ44460.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae 35/02]
gi|268551473|gb|EEZ46492.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae FA19]
gi|268584068|gb|EEZ48744.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae MS11]
gi|268586402|gb|EEZ51078.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID18]
gi|268588668|gb|EEZ53344.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID1]
gi|268623276|gb|EEZ55676.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae PID332]
gi|268625441|gb|EEZ57841.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-92-679]
gi|269209729|gb|EEZ76184.1| NADH dehydrogenase, B subunit [Neisseria lactamica ATCC 23970]
gi|284798053|gb|EFC53400.1| NADH dehydrogenase, B subunit [Neisseria subflava NJ9703]
gi|296839669|gb|EFH23607.1| NADH dehydrogenase, B subunit [Neisseria polysaccharea ATCC 43768]
gi|304336940|gb|EFM03130.1| NADH-quinone oxidoreductase subunit B [Neisseria meningitidis ATCC
13091]
gi|308388462|gb|ADO30782.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha710]
gi|309379802|emb|CBX21578.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006747|emb|CBN88217.1| NADH dehydrogenase I chain B [Neisseria lactamica 020-06]
gi|316985170|gb|EFV64122.1| NADH-quinone oxidoreductase, B subunit [Neisseria meningitidis
H44/76]
gi|317165131|gb|ADV08672.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae TCDC-NG08107]
gi|317399719|gb|EFV80382.1| NADH dehydrogenase subunit I B [Neisseria mucosa C102]
gi|319411275|emb|CBY91682.1| NADH-quinone oxidoreductase chain B (NADH dehydrogenase I, chain B;
NDH-1, chain B) [Neisseria meningitidis WUE 2594]
gi|325129040|gb|EGC51890.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
N1568]
gi|325130970|gb|EGC53697.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
OX99.30304]
gi|325131612|gb|EGC54319.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
M6190]
gi|325135045|gb|EGC57673.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
M13399]
gi|325137069|gb|EGC59665.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
M0579]
gi|325139133|gb|EGC61679.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
ES14902]
gi|325141078|gb|EGC63581.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
CU385]
gi|325143083|gb|EGC65430.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
961-5945]
gi|325143153|gb|EGC65499.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
961-5945]
gi|325145306|gb|EGC67584.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
M01-240013]
gi|325197528|gb|ADY92984.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
G2136]
gi|325199445|gb|ADY94900.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
H44/76]
gi|325202929|gb|ADY98383.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
M01-240149]
gi|325203359|gb|ADY98812.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
M01-240355]
gi|325205327|gb|ADZ00780.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
M04-240196]
gi|325207273|gb|ADZ02725.1| NADH:ubiquinone dehydrogenase, B subunit [Neisseria meningitidis
NZ-05/33]
Length = 160
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 109/149 (73%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ+D
Sbjct: 8 KKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQAD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPVD+
Sbjct: 68 LMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYG++ LQ+KI+R +
Sbjct: 128 YVPGCPPTAEALIYGLIQLQQKIKRTSTI 156
>gi|46137521|ref|XP_390452.1| hypothetical protein FG10276.1 [Gibberella zeae PH-1]
Length = 222
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 115/181 (63%), Positives = 138/181 (76%), Gaps = 4/181 (2%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLA 63
+ + QS+ + V + + SEI KG + +T++D + WAR SL MTFGLA
Sbjct: 38 DASALQTQSATGVGNVRREVP-LPSEIPPKGALQYALTTLDAVTNWARQSSLWPMTFGLA 96
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+V
Sbjct: 97 CCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWV 156
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
ISMGSCANGGGYYHYSY+VVRGCDR+VPVD+YVPGCPPT+EAL+YGI LQ+K+R+
Sbjct: 157 ISMGSCANGGGYYHYSYAVVRGCDRVVPVDVYVPGCPPTSEALMYGIFQLQRKMRQTRIT 216
Query: 184 K 184
+
Sbjct: 217 R 217
>gi|168050412|ref|XP_001777653.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670996|gb|EDQ57555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 174
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 114/147 (77%), Positives = 126/147 (85%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD M
Sbjct: 22 EFVLSKVDALMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCM 81
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 82 IVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 141
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183
PGCPPTAEAL+YG+L LQKKI R +V
Sbjct: 142 PGCPPTAEALLYGLLQLQKKINRRKDV 168
>gi|53718848|ref|YP_107834.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei K96243]
gi|53725818|ref|YP_103433.1| NADH dehydrogenase subunit B [Burkholderia mallei ATCC 23344]
gi|76808565|ref|YP_332845.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1710b]
gi|83720537|ref|YP_441615.1| NADH dehydrogenase subunit B [Burkholderia thailandensis E264]
gi|134283897|ref|ZP_01770593.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
305]
gi|251767151|ref|ZP_02266185.2| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20]
gi|254207439|ref|ZP_04913789.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU]
gi|52209262|emb|CAH35207.1| NADH dehydrogenase I chain B [Burkholderia pseudomallei K96243]
gi|52429241|gb|AAU49834.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
23344]
gi|76578018|gb|ABA47493.1| NADH dehydrogenase I chain B [Burkholderia pseudomallei 1710b]
gi|83654362|gb|ABC38425.1| NADH-quinone oxidoreductase, B subunit [Burkholderia thailandensis
E264]
gi|134244686|gb|EBA44784.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
305]
gi|147751333|gb|EDK58400.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU]
gi|243063701|gb|EES45887.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20]
Length = 173
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 22 KEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 81
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 82 VMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 141
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 142 YVPGCPPTAEALVYGVIQLQAKIRRTSTI 170
>gi|197120286|ref|YP_002140713.1| NADH dehydrogenase I subunit B [Geobacter bemidjiensis Bem]
gi|238065151|sp|B5EFG2|NUOB_GEOBB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|197089646|gb|ACH40917.1| NADH dehydrogenase I, B subunit [Geobacter bemidjiensis Bem]
Length = 170
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 80/152 (52%), Positives = 109/152 (71%), Gaps = 1/152 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ + + TS+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASP
Sbjct: 4 DQPLGENIITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D +I+AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D +
Sbjct: 64 RQADCIIIAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDEAL 122
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
PVD+Y+PGCPP EAL+YG+L LQ KI N
Sbjct: 123 PVDVYIPGCPPRPEALLYGLLKLQDKIANERN 154
>gi|149242844|ref|XP_001526472.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450595|gb|EDK44851.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 224
Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats.
Identities = 111/184 (60%), Positives = 134/184 (72%), Gaps = 2/184 (1%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTF 60
T V K + +++ DF +S + + +TS+D + WAR S +TF
Sbjct: 36 NTPVASKRYVSSKELTPKELPTDFPLMSQKTASSAVDYALTSLDTIANWARKSSFWPVTF 95
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMM S PRYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P
Sbjct: 96 GLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDP 155
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
++VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+ LQKK+ +
Sbjct: 156 KWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALMYGVFQLQKKMMKT 215
Query: 181 GNVK 184
+
Sbjct: 216 RITR 219
>gi|48843827|gb|AAT47086.1| putative NADH-ubiquinone oxidoreductase 20 kDa subunit [Oryza
sativa Japonica Group]
gi|125553102|gb|EAY98811.1| hypothetical protein OsI_20756 [Oryza sativa Indica Group]
gi|215769469|dbj|BAH01698.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 204
Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats.
Identities = 112/145 (77%), Positives = 122/145 (84%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYD +RFG R SPRQSD M
Sbjct: 52 EFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGASRYDFDRFGVIFRPSPRQSDCM 111
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 112 IVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 171
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPPTAEAL+YG+L LQKKI R
Sbjct: 172 PGCPPTAEALLYGVLQLQKKINRRR 196
>gi|138896932|ref|YP_001127385.1| NADH dehydrogenase subunit B [Geobacillus thermodenitrificans
NG80-2]
gi|238065154|sp|A4ITI6|NUOB_GEOTN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|134268445|gb|ABO68640.1| NADH-quinone oxidoreductase chain B [Geobacillus
thermodenitrificans NG80-2]
Length = 170
Score = 228 bits (582), Expect = 3e-58, Method: Composition-based stats.
Identities = 92/152 (60%), Positives = 112/152 (73%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
E + T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG RASPR
Sbjct: 14 EEVKRNVFFTTLEQLKGWARSNSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSFFRASPR 73
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
QSDVMIV+GT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G D+IVP
Sbjct: 74 QSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVP 133
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VD+Y+PGCPP ALIYGI L++KIR
Sbjct: 134 VDVYIPGCPPNPAALIYGIHKLKEKIRLEAKT 165
>gi|241953755|ref|XP_002419599.1| NADH-ubiquinone oxidoreductase subunit, putative [Candida
dubliniensis CD36]
gi|223642939|emb|CAX43194.1| NADH-ubiquinone oxidoreductase subunit, putative [Candida
dubliniensis CD36]
Length = 218
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 107/165 (64%), Positives = 129/165 (78%), Gaps = 2/165 (1%)
Query: 22 VDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ DF +S + +++TS+D + WAR S +TFGLACCAVEMM S PRYD
Sbjct: 49 LPTDFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLACCAVEMMHVSAPRYDQ 108
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
+R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYS
Sbjct: 109 DRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYS 168
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSVVRGCDR++PVDIYVPGCPPTAEAL+YG+ LQKK+ + +
Sbjct: 169 YSVVRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRITR 213
>gi|67642191|ref|ZP_00440951.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
(ndh-1, chain b) [Burkholderia mallei GB8 horse 4]
gi|217420025|ref|ZP_03451531.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
576]
gi|226195363|ref|ZP_03790952.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237811583|ref|YP_002896034.1| NADH-quinone oxidoreductase, b subunit [Burkholderia pseudomallei
MSHR346]
gi|242316907|ref|ZP_04815923.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
1106b]
gi|217397329|gb|EEC37345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
576]
gi|225932565|gb|EEH28563.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237506251|gb|ACQ98569.1| NADH-quinone oxidoreductase, b subunit [Burkholderia pseudomallei
MSHR346]
gi|238523287|gb|EEP86726.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
(ndh-1, chain b) [Burkholderia mallei GB8 horse 4]
gi|242140146|gb|EES26548.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
1106b]
Length = 153
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 114/149 (76%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ W RTGSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 2 KEGFVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 61
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 62 VMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 121
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 122 YVPGCPPTAEALVYGVIQLQAKIRRTSTI 150
>gi|196249749|ref|ZP_03148445.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. G11MC16]
gi|196210625|gb|EDY05388.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. G11MC16]
Length = 170
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 92/152 (60%), Positives = 112/152 (73%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
E + T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG RASPR
Sbjct: 14 EEVKRNVFFTTLEQLKGWARSNSLWPLTFGLACCAIEMMAVGGAHYDLDRFGSFFRASPR 73
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
QSDVMIV+GT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G D+IVP
Sbjct: 74 QSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVP 133
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VD+Y+PGCPP ALIYGI L++KIR
Sbjct: 134 VDVYIPGCPPNPAALIYGIHKLKEKIRLEAKT 165
>gi|116201555|ref|XP_001226589.1| hypothetical protein CHGG_08662 [Chaetomium globosum CBS 148.51]
gi|88177180|gb|EAQ84648.1| hypothetical protein CHGG_08662 [Chaetomium globosum CBS 148.51]
Length = 223
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 115/180 (63%), Positives = 134/180 (74%), Gaps = 3/180 (1%)
Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLAC 64
+ + L K D + S+ KG + +T++D + WAR GSL MTFGLAC
Sbjct: 39 ASAVQPHAGYGLAKPDRKEVPLPSQEPTKGLVQYALTTLDIMTNWARQGSLWPMTFGLAC 98
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VI
Sbjct: 99 CAVEMMHLSAPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVI 158
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQ+K+R +
Sbjct: 159 SMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 218
>gi|291042878|ref|ZP_06568619.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae DGI2]
gi|291013312|gb|EFE05278.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae DGI2]
Length = 197
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 109/149 (73%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ+D
Sbjct: 45 KKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQAD 104
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPVD+
Sbjct: 105 LMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDV 164
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYG++ LQ+KI+R +
Sbjct: 165 YVPGCPPTAEALIYGLIQLQQKIKRTSTI 193
>gi|238028142|ref|YP_002912373.1| NADH dehydrogenase subunit B [Burkholderia glumae BGR1]
gi|237877336|gb|ACR29669.1| NADH-quinone oxidoreductase, B subunit [Burkholderia glumae BGR1]
Length = 159
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 113/149 (75%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ W RTGSL +TFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 KEGFVTTTADKLINWTRTGSLWPVTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALRRVYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 VMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALVYGVIQLQAKIRRTSTI 156
>gi|253702594|ref|YP_003023783.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M21]
gi|259514665|sp|C6E8N4|NUOB_GEOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|251777444|gb|ACT20025.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M21]
Length = 170
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 79/152 (51%), Positives = 109/152 (71%), Gaps = 1/152 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ + + TS+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASP
Sbjct: 4 DQPLGENIITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D +I+AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D +
Sbjct: 64 RQADCIIIAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDEAL 122
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
PVD+Y+PGCPP EAL+YG++ LQ KI N
Sbjct: 123 PVDVYIPGCPPRPEALLYGLMKLQDKIANERN 154
>gi|152977486|ref|YP_001377003.1| NADH dehydrogenase subunit B [Bacillus cereus subsp. cytotoxis NVH
391-98]
gi|238065062|sp|A7GV50|NUOB_BACCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|152026238|gb|ABS24008.1| NADH-quinone oxidoreductase, B subunit [Bacillus cytotoxicus NVH
391-98]
Length = 172
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 111/160 (69%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+ + T+++Q+ WAR+ SL MTFGLACCA+EMM YDL+RFG
Sbjct: 6 EELHPQEQAELERNIFFTTLEQIKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFG 65
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV
Sbjct: 66 SFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVV 125
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+G D+IVPVD+Y+PGCPP ALIYGI L++KIR
Sbjct: 126 KGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIRYEAKT 165
>gi|238881092|gb|EEQ44730.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Candida albicans
WO-1]
Length = 226
Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats.
Identities = 108/180 (60%), Positives = 135/180 (75%), Gaps = 3/180 (1%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLAC 64
++ +S + + + DF +S + +++TS+D + WAR S +TFGLAC
Sbjct: 43 TRRYVSTKELTP-QTLPTDFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLAC 101
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM S PRYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VI
Sbjct: 102 CAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVI 161
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+ LQKK+ + +
Sbjct: 162 SMGSCANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRITR 221
>gi|242765651|ref|XP_002341018.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces
stipitatus ATCC 10500]
gi|218724214|gb|EED23631.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces
stipitatus ATCC 10500]
Length = 226
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 117/186 (62%), Positives = 136/186 (73%), Gaps = 2/186 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWM 58
M + + ++ S + KV + S E + +T++DQ+ WAR SL M
Sbjct: 36 MPASAIERQSEPSSSLTASGKVRREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPM 95
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 96 TFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMP 155
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R
Sbjct: 156 DPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMR 215
Query: 179 RVGNVK 184
+
Sbjct: 216 HTKITR 221
>gi|108804469|ref|YP_644406.1| NADH-quinone oxidoreductase subunit B [Rubrobacter xylanophilus DSM
9941]
gi|123069071|sp|Q1AVI4|NUOB_RUBXD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|108765712|gb|ABG04594.1| NADH-quinone oxidoreductase, B subunit [Rubrobacter xylanophilus
DSM 9941]
Length = 251
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 84/157 (53%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + TS D+L WAR SL + FGLACCA+EMM M DLERFG
Sbjct: 2 GLMQKFDEPNIITTSTDKLFNWARKNSLWPLQFGLACCAIEMMSTGMAHNDLERFGAGFF 61
Query: 88 -ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
SPRQ+DVMIV+GT++ KMA + R+Y+QMPEP++VI+MG+CA GG + YSV+ G
Sbjct: 62 AGSPRQADVMIVSGTVSTKMAERMTRLYEQMPEPKWVIAMGACAISGGPFLDGYSVLMGA 121
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DR++PVD+YVPGCPP EALI+GI+ LQKKI R V
Sbjct: 122 DRVIPVDVYVPGCPPRPEALIFGIMTLQKKIEREQQV 158
>gi|319943349|ref|ZP_08017631.1| NADH-quinone oxidoreductase subunit B [Lautropia mirabilis ATCC
51599]
gi|319743164|gb|EFV95569.1| NADH-quinone oxidoreductase subunit B [Lautropia mirabilis ATCC
51599]
Length = 159
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 115/149 (77%), Positives = 129/149 (86%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
++GF+ T+VD+L+ W RTGSL MTFGLACCAVEM+ A + RYDL+RFG R SPR SD
Sbjct: 8 NEGFVTTNVDKLINWTRTGSLWAMTFGLACCAVEMIHAGVSRYDLDRFGVIFRPSPRHSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYGI+ LQ+KIR +
Sbjct: 128 YVPGCPPTAEALIYGIIQLQRKIRETNTI 156
>gi|195341209|ref|XP_002037203.1| GM12792 [Drosophila sechellia]
gi|194131319|gb|EDW53362.1| GM12792 [Drosophila sechellia]
Length = 204
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 108/144 (75%), Positives = 125/144 (86%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAG
Sbjct: 56 ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 115
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP
Sbjct: 116 TLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 175
Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
PTAEAL+YGIL LQKK++R+ ++
Sbjct: 176 PTAEALMYGILQLQKKVKRMRTLQ 199
>gi|328874905|gb|EGG23270.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium
fasciculatum]
Length = 179
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 114/172 (66%), Positives = 134/172 (77%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ Q+ L K+ A + + + +++ +D LV WARTGS MTFGLACCAVEMM
Sbjct: 2 ASQAGQHLSKLLASSFKAAPPSSVPEIVISKLDGLVNWARTGSFWPMTFGLACCAVEMMH 61
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
RYD++RFG PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYVISMGSCAN
Sbjct: 62 GYAARYDMDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVISMGSCAN 121
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGGYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YGIL LQKKI+R +
Sbjct: 122 GGGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGILQLQKKIQREQAL 173
>gi|327301805|ref|XP_003235595.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Trichophyton rubrum
CBS 118892]
gi|326462947|gb|EGD88400.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Trichophyton rubrum
CBS 118892]
Length = 227
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 118/184 (64%), Positives = 135/184 (73%), Gaps = 4/184 (2%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTF 60
T + + S S K + S+ +G L +T++DQ+ WAR GSL MTF
Sbjct: 40 TEQSSALQSTAGSVPARK-PRREVPLPSQEKPQGVLDYALTTLDQVANWARQGSLWPMTF 98
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 99 GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEP 158
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R
Sbjct: 159 RWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNT 218
Query: 181 GNVK 184
+
Sbjct: 219 KITR 222
>gi|197105267|ref|YP_002130644.1| NADH dehydrogenase I, B subunit [Phenylobacterium zucineum HLK1]
gi|238065189|sp|B4RCM8|NUOB_PHEZH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|196478687|gb|ACG78215.1| NADH dehydrogenase I, B subunit [Phenylobacterium zucineum HLK1]
Length = 193
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 129/161 (80%), Positives = 143/161 (88%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D F +S + KGF+ + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+
Sbjct: 31 DPYFDGVSQRLADKGFVTAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 90
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
GFAPRASPRQSDVMIVAGTL NKMA ALR+VYDQMPEPRYVISMGSCANGGGYY++SYS
Sbjct: 91 GFAPRASPRQSDVMIVAGTLVNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYFSYST 150
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VRGCDR+VPVD+YVPGCPPTAEAL+YG+L LQKKIRR G +
Sbjct: 151 VRGCDRVVPVDVYVPGCPPTAEALVYGVLQLQKKIRRTGTI 191
>gi|68472189|ref|XP_719890.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida
albicans SC5314]
gi|68472424|ref|XP_719773.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida
albicans SC5314]
gi|46441605|gb|EAL00901.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida
albicans SC5314]
gi|46441731|gb|EAL01026.1| potential mitochondrial Complex I, NUKM_20kd subunit [Candida
albicans SC5314]
Length = 223
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 108/180 (60%), Positives = 135/180 (75%), Gaps = 3/180 (1%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLAC 64
++ +S + + + DF +S + +++TS+D + WAR S +TFGLAC
Sbjct: 40 TRRYVSTKELTP-QTLPTDFPLMSEKKATNAADYVLTSLDMIANWARKSSFWPVTFGLAC 98
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM S PRYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VI
Sbjct: 99 CAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVI 158
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SMGSCANGGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+ LQKK+ + +
Sbjct: 159 SMGSCANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRITR 218
>gi|160871863|ref|ZP_02061995.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
(ndh-1, chain b) [Rickettsiella grylli]
gi|159120662|gb|EDP46000.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
(ndh-1, chain b) [Rickettsiella grylli]
Length = 160
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 111/157 (70%), Positives = 131/157 (83%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
I S + +GF TS D+L+ WAR+GSL M+FGLACCAVEMM ++ RYDL+RFG R
Sbjct: 2 GIESLLQQQGFFTTSFDKLLAWARSGSLWPMSFGLACCAVEMMHSAASRYDLDRFGVVFR 61
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
SPRQSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHY+YSVVRGCD
Sbjct: 62 PSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYAYSVVRGCD 121
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
RIVPVD+YVPGCPPTAEAL+YG++ LQ KI++ ++
Sbjct: 122 RIVPVDVYVPGCPPTAEALVYGVIQLQNKIKKNHFIE 158
>gi|254883413|ref|ZP_05256123.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_3_47FAA]
gi|254836206|gb|EET16515.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_3_47FAA]
Length = 205
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 79/184 (42%), Positives = 115/184 (62%), Gaps = 7/184 (3%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58
M + K I + K + + ++ G LV +D L+ W R+ SL +
Sbjct: 8 MEVKKPTIKSIPYEDF----KDNEYLENMVKQLNEGGTKVLVGCLDDLINWGRSNSLWPL 63
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
TF +CC +E M RYD RFGF RASPRQ+D+++VAGT+T+KMA L+R+YDQM
Sbjct: 64 TFATSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIMVAGTITHKMAPVLKRLYDQM 123
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
+P+YVI++G CA GG + SY V+ G D+I+PVD+Y+PGCPP EAL+YG++ LQ+K+
Sbjct: 124 ADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEALLYGMIQLQRKV 183
Query: 178 RRVG 181
+
Sbjct: 184 KLEK 187
>gi|124006095|ref|ZP_01690931.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Microscilla marina
ATCC 23134]
gi|123988272|gb|EAY27925.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Microscilla marina
ATCC 23134]
Length = 174
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 89/154 (57%), Positives = 110/154 (71%), Gaps = 1/154 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ + ++T + L+ WAR SL M FGLACCA+EMM YDL+RFG PRA
Sbjct: 4 LDQQFEQDNIILTKAEDLINWARLSSLWPMGFGLACCAIEMMSTFAAGYDLDRFGVFPRA 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
SPRQSDVMIVAGT+T KMA ++R+Y+QM EPRYVISMGSC+N GG Y + Y VV+G D
Sbjct: 64 SPRQSDVMIVAGTVTFKMADRIKRLYEQMAEPRYVISMGSCSNCGGPYWEHGYHVVKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
RI+PVD+YVPGCPP EALI G + LQ+K+R
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGFMKLQEKVRNER 157
>gi|319794667|ref|YP_004156307.1| NADH-quinone oxidoreductase, b subunit [Variovorax paradoxus EPS]
gi|315597130|gb|ADU38196.1| NADH-quinone oxidoreductase, B subunit [Variovorax paradoxus EPS]
Length = 159
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 111/149 (74%), Positives = 128/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D +V WA+TGSL MTFGLACCAVEMM A RYD++RFG R SPRQSD
Sbjct: 8 KEGFVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 LMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ+KIRR +
Sbjct: 128 YVPGCPPTAEALLYGVIQLQQKIRRTNTI 156
>gi|163855988|ref|YP_001630286.1| NADH dehydrogenase subunit B [Bordetella petrii DSM 12804]
gi|163259716|emb|CAP42017.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit, chain B [Bordetella
petrii]
Length = 178
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 110/160 (68%), Positives = 130/160 (81%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
++ + I +GF+ TS D+ + WA+TGS+ MTFGLACCAVEMM A RYDL++FG
Sbjct: 17 SETNMAIDGILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFG 76
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
R SPRQSD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVV
Sbjct: 77 IIFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVV 136
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
RGCDRIVPVD+YVPGCPPTAEAL+YG+L +Q KIR +
Sbjct: 137 RGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 176
>gi|313672278|ref|YP_004050389.1| NADH dehydrogenase subunit b [Calditerrivibrio nitroreducens DSM
19672]
gi|312939034|gb|ADR18226.1| NADH dehydrogenase subunit B [Calditerrivibrio nitroreducens DSM
19672]
Length = 158
Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats.
Identities = 82/149 (55%), Positives = 110/149 (73%), Gaps = 1/149 (0%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
+ T+VD ++ WAR SL +TFGLACCA+EMM +YDL+R G RA+PRQ+D+
Sbjct: 10 DNIITTTVDGVINWARRSSLWPVTFGLACCAIEMMAVGASKYDLDRLGVIFRATPRQADL 69
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIVAGT+T KMA +R+VYDQMPEP++VI+MGSCA GG ++ +YS V+G D IVPVD Y
Sbjct: 70 MIVAGTVTRKMAPVVRKVYDQMPEPKWVIAMGSCATSGGIFN-TYSTVQGVDEIVPVDFY 128
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PGCPP EAL+ I+ LQ+KI+ ++
Sbjct: 129 IPGCPPRPEALLDAIVALQEKIKGEKVLR 157
>gi|295697422|ref|YP_003590660.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912]
gi|295413024|gb|ADG07516.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912]
Length = 177
Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats.
Identities = 85/156 (54%), Positives = 115/156 (73%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
++ + + ++T+++++ WAR+ S+ ++FGLACCA+EMM S YD +RFG R
Sbjct: 13 QLEEKELERNVVLTTLEKVKAWARSNSMWPLSFGLACCAIEMMATSGSHYDADRFGVFFR 72
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
ASPRQ+D+MIV+GT+T KMA LRR+YDQM EPR+VI+MGSCA GG Y SYSVV G D
Sbjct: 73 ASPRQADLMIVSGTVTKKMAPLLRRLYDQMAEPRWVIAMGSCATAGGPYVRSYSVVNGVD 132
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+IVPVD+Y+PGCPP+ ALIYG+ LQ+KIR
Sbjct: 133 QIVPVDVYIPGCPPSPVALIYGLNKLQEKIRYEART 168
>gi|150004312|ref|YP_001299056.1| NADH dehydrogenase subunit B [Bacteroides vulgatus ATCC 8482]
gi|294776877|ref|ZP_06742340.1| NADH-quinone oxidoreductase, B subunit [Bacteroides vulgatus PC510]
gi|319644247|ref|ZP_07998760.1| NADH dehydrogenase subunit I B [Bacteroides sp. 3_1_40A]
gi|238065064|sp|A6L170|NUOB_BACV8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|149932736|gb|ABR39434.1| NADH dehydrogenase I chain B [Bacteroides vulgatus ATCC 8482]
gi|294449353|gb|EFG17890.1| NADH-quinone oxidoreductase, B subunit [Bacteroides vulgatus PC510]
gi|317384238|gb|EFV65210.1| NADH dehydrogenase subunit I B [Bacteroides sp. 3_1_40A]
Length = 198
Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats.
Identities = 79/184 (42%), Positives = 115/184 (62%), Gaps = 7/184 (3%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58
M + K I + K + + ++ G LV +D L+ W R+ SL +
Sbjct: 1 MEVKKPTIKSIPYEDF----KDNEYLENMVKQLNEGGTKVLVGCLDDLINWGRSNSLWPL 56
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
TF +CC +E M RYD RFGF RASPRQ+D+++VAGT+T+KMA L+R+YDQM
Sbjct: 57 TFATSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIMVAGTITHKMAPVLKRLYDQM 116
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
+P+YVI++G CA GG + SY V+ G D+I+PVD+Y+PGCPP EAL+YG++ LQ+K+
Sbjct: 117 ADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEALLYGMIQLQRKV 176
Query: 178 RRVG 181
+
Sbjct: 177 KLEK 180
>gi|315056963|ref|XP_003177856.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma gypseum CBS
118893]
gi|311339702|gb|EFQ98904.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma gypseum CBS
118893]
Length = 227
Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats.
Identities = 118/184 (64%), Positives = 135/184 (73%), Gaps = 4/184 (2%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTF 60
T + + S S K + S+ +G L +T++DQ+ WAR GSL MTF
Sbjct: 40 TEQSSALQSTAGSVPARK-PRREVPLPSQEKPQGVLDYALTTLDQVANWARQGSLWPMTF 98
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 99 GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEP 158
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R
Sbjct: 159 RWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNT 218
Query: 181 GNVK 184
+
Sbjct: 219 KITR 222
>gi|301107924|ref|XP_002903044.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
T30-4]
gi|262098162|gb|EEY56214.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
T30-4]
Length = 213
Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats.
Identities = 104/162 (64%), Positives = 126/162 (77%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
V + ++ + V+ +D LV W R SL ++FGLACCAVEMM A+ RYD ER
Sbjct: 46 VADLLNGNAAARDSAEYAVSRLDDLVNWGRKSSLWPISFGLACCAVEMMHAAGSRYDFER 105
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
G RASPRQ+DVMIVAGTLTNKMA ALRR+YDQMPEPRYV+S+GSCANGGGYYHYSY+
Sbjct: 106 MGMVFRASPRQTDVMIVAGTLTNKMAPALRRIYDQMPEPRYVVSLGSCANGGGYYHYSYA 165
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
V RG DR+VPVDIYVPGCPPT+EALI+G++ LQKKI+ ++
Sbjct: 166 VARGVDRVVPVDIYVPGCPPTSEALIFGLMQLQKKIKGNKSL 207
>gi|291515382|emb|CBK64592.1| NADH dehydrogenase subunit B [Alistipes shahii WAL 8301]
Length = 218
Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats.
Identities = 75/162 (46%), Positives = 109/162 (67%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D+++ W R+ SL +TF +CC +E M RYD
Sbjct: 19 NEYLEQMVRELRENGTHVVAGCLDEVINWGRSNSLWPLTFATSCCGIEFMAVGAARYDFA 78
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D ++VAGT+T+KMA LRR+YDQM +P+YVI++G CA GG + S
Sbjct: 79 RFGFEVARASPRQADFIMVAGTITHKMAPVLRRLYDQMADPKYVIAVGGCAISGGPFKKS 138
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G DRI+PVD+Y+PGCPP EA++YG++ LQ+K++
Sbjct: 139 YHVVNGVDRILPVDVYIPGCPPRPEAMLYGLMQLQRKVKLQR 180
>gi|114777362|ref|ZP_01452359.1| NADH dehydrogenase subunit B [Mariprofundus ferrooxydans PV-1]
gi|114552144|gb|EAU54646.1| NADH dehydrogenase subunit B [Mariprofundus ferrooxydans PV-1]
Length = 158
Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats.
Identities = 111/149 (74%), Positives = 124/149 (83%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ T+ D+L+ AR GSL MTFGLACCAVEMM A RYDL+RFG R SPRQSD
Sbjct: 8 EKGFITTTADKLINGARAGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VM+VAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDI
Sbjct: 68 VMVVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG + LQ+KI+R +
Sbjct: 128 YVPGCPPTAEALLYGFIQLQEKIKRTNTI 156
>gi|330997245|ref|ZP_08321098.1| NADH-quinone oxidoreductase, B subunit [Paraprevotella xylaniphila
YIT 11841]
gi|329571040|gb|EGG52747.1| NADH-quinone oxidoreductase, B subunit [Paraprevotella xylaniphila
YIT 11841]
Length = 204
Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats.
Identities = 74/166 (44%), Positives = 110/166 (66%), Gaps = 3/166 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + R++ ++ G ++ ++D L+ W R+ SL +TFG +CCA+E M RYD
Sbjct: 19 KNNDYLLRMAEKLNRDGAGIVLGTLDDLINWGRSNSLWSLTFGTSCCAIEFMALGAARYD 78
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
+ RFGF R SPRQ+D+++V GT+T +MA L+R+YDQM EP+YV+++G C GG +
Sbjct: 79 MARFGFEVTRNSPRQADMIMVLGTITYRMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFR 138
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SY VV G D I+PVD+Y+PGCPP EA YG++ LQ+KI+ +
Sbjct: 139 KSYHVVNGIDEIIPVDVYIPGCPPRPEAFFYGMMQLQRKIKAERFL 184
>gi|242088593|ref|XP_002440129.1| hypothetical protein SORBIDRAFT_09g026580 [Sorghum bicolor]
gi|241945414|gb|EES18559.1| hypothetical protein SORBIDRAFT_09g026580 [Sorghum bicolor]
Length = 202
Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats.
Identities = 116/170 (68%), Positives = 128/170 (75%), Gaps = 5/170 (2%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ + ++E F+V+ VD L+ WAR GS+ MTFGLACCAVEMM
Sbjct: 30 RPAPYGGAAPLPPALASKAAE-----FVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMH 84
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
A RYD +RFG R SPRQSD MIVAGTLTNKMA ALRRVYDQMPEPR+VISMGSCAN
Sbjct: 85 AGASRYDFDRFGLIFRPSPRQSDCMIVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCAN 144
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R
Sbjct: 145 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRK 194
>gi|121604331|ref|YP_981660.1| NADH dehydrogenase subunit B [Polaromonas naphthalenivorans CJ2]
gi|218528003|sp|A1VM61|NUOB_POLNA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|120593300|gb|ABM36739.1| NADH dehydrogenase subunit B [Polaromonas naphthalenivorans CJ2]
Length = 159
Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats.
Identities = 112/149 (75%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ TS D +V WA+TGSL MTFGLACCAVEMM A RYD++RFG R SPRQSD
Sbjct: 8 KEGFVTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTL NKM ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 LMIVAGTLCNKMGPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ+KIRR +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQQKIRRTNTI 156
>gi|312383258|gb|EFR28415.1| hypothetical protein AND_03673 [Anopheles darlingi]
Length = 210
Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats.
Identities = 107/145 (73%), Positives = 127/145 (87%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
V +D ++ W R GS+ +TFGLACCAVEMM + PRYD++RFG RASPRQ+DV+IVA
Sbjct: 61 VARLDDVLNWGRKGSIWPLTFGLACCAVEMMHIAAPRYDMDRFGVVFRASPRQADVIIVA 120
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPGC
Sbjct: 121 GTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC 180
Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
PPTAEAL+YG+L LQKK++R+ ++
Sbjct: 181 PPTAEALLYGVLQLQKKVKRMKTLQ 205
>gi|212693812|ref|ZP_03301940.1| hypothetical protein BACDOR_03333 [Bacteroides dorei DSM 17855]
gi|237709340|ref|ZP_04539821.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
9_1_42FAA]
gi|237724574|ref|ZP_04555055.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
D4]
gi|265755015|ref|ZP_06089929.1| NADH-quinone oxidoreductase [Bacteroides sp. 3_1_33FAA]
gi|212663701|gb|EEB24275.1| hypothetical protein BACDOR_03333 [Bacteroides dorei DSM 17855]
gi|229437133|gb|EEO47210.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides dorei
5_1_36/D4]
gi|229456725|gb|EEO62446.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
9_1_42FAA]
gi|263234626|gb|EEZ20205.1| NADH-quinone oxidoreductase [Bacteroides sp. 3_1_33FAA]
Length = 198
Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats.
Identities = 79/184 (42%), Positives = 115/184 (62%), Gaps = 7/184 (3%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWM 58
M + K I + K + + ++ G LV +D L+ W R+ SL +
Sbjct: 1 MEVKKPTIKSIPYEDF----KNNEYLENMVKQLNESGTKVLVGCLDDLINWGRSNSLWPL 56
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
TF +CC +E M RYD RFGF RASPRQ+D+++VAGT+T+KMA L+R+YDQM
Sbjct: 57 TFATSCCGIEFMAVGAARYDFARFGFEVARASPRQADMIMVAGTITHKMAPVLKRLYDQM 116
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
+P+YVI++G CA GG + SY V+ G D+I+PVD+Y+PGCPP EAL+YG++ LQ+K+
Sbjct: 117 ADPKYVIAVGGCAISGGPFKKSYHVLNGVDKILPVDVYIPGCPPRPEALLYGMIQLQRKV 176
Query: 178 RRVG 181
+
Sbjct: 177 KLEK 180
>gi|71906589|ref|YP_284176.1| NADH dehydrogenase subunit B [Dechloromonas aromatica RCB]
gi|123627979|sp|Q47HH5|NUOB_DECAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|71846210|gb|AAZ45706.1| NADH dehydrogenase subunit B [Dechloromonas aromatica RCB]
Length = 158
Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats.
Identities = 115/149 (77%), Positives = 128/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T+ D+L+ + RTGSL MTFGLACCAVEM+ A + RYDL+RFG R SPRQSD
Sbjct: 8 QEGFVTTTADKLINYMRTGSLWPMTFGLACCAVEMIHAGVSRYDLDRFGVVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTLTNKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 68 VMIVAGTLTNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYGI+ LQ KIRR +
Sbjct: 128 YVPGCPPTAEALIYGIIQLQNKIRRTNTI 156
>gi|239816482|ref|YP_002945392.1| NADH dehydrogenase subunit B [Variovorax paradoxus S110]
gi|259514693|sp|C5CT19|NUOB_VARPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|239803059|gb|ACS20126.1| NADH-quinone oxidoreductase, B subunit [Variovorax paradoxus S110]
Length = 159
Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats.
Identities = 111/153 (72%), Positives = 129/153 (84%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ +GF+ T+ D +V WA+TGSL MTFGLACCAVEMM A RYD++RFG R SP
Sbjct: 4 EGVMKEGFVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEAL+YG++ LQ+KIRR +
Sbjct: 124 PVDVYVPGCPPTAEALLYGVIQLQQKIRRTNTI 156
>gi|307566084|ref|ZP_07628542.1| NADH-quinone oxidoreductase, B subunit [Prevotella amnii CRIS
21A-A]
gi|307345272|gb|EFN90651.1| NADH-quinone oxidoreductase, B subunit [Prevotella amnii CRIS
21A-A]
Length = 289
Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats.
Identities = 76/164 (46%), Positives = 114/164 (69%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + ++++++ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD
Sbjct: 17 KDNDTLDKMAADLNDGGTNLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA GG +
Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY V+RG D I+PVD+Y+PGCPP EA+IYG++ LQ+K++
Sbjct: 137 NSYHVMRGIDEIIPVDVYIPGCPPRPEAIIYGMMQLQRKVKIEK 180
>gi|259486449|tpe|CBF84294.1| TPA: hypothetical protein ANIA_11251 [Aspergillus nidulans FGSC A4]
Length = 211
Score = 227 bits (578), Expect = 6e-58, Method: Composition-based stats.
Identities = 104/147 (70%), Positives = 120/147 (81%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+++T D L++WAR GS ++F LACC VEMM SMPRYD +R G RASPRQ+DVMI
Sbjct: 60 YVLTKTDALISWARNGSFWPLSFALACCGVEMMHTSMPRYDQDRLGIIFRASPRQADVMI 119
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRG DRIVPVD+YVP
Sbjct: 120 VAGTLTNKMAPALRQLYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDVYVP 179
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GCPP EAL+ GI LQ+KIRR +
Sbjct: 180 GCPPMPEALLQGIFTLQRKIRRTPVTR 206
>gi|326489346|dbj|BAK01656.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511367|dbj|BAJ87697.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 201
Score = 227 bits (578), Expect = 6e-58, Method: Composition-based stats.
Identities = 114/145 (78%), Positives = 123/145 (84%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+V+ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD M
Sbjct: 49 EFVVSKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGVIFRPSPRQSDCM 108
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 109 IVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 168
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPPTAEAL+YG+L LQKKI R
Sbjct: 169 PGCPPTAEALLYGVLQLQKKINRRK 193
>gi|242015738|ref|XP_002428504.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, putative [Pediculus
humanus corporis]
gi|212513138|gb|EEB15766.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, putative [Pediculus
humanus corporis]
Length = 214
Score = 227 bits (578), Expect = 6e-58, Method: Composition-based stats.
Identities = 102/177 (57%), Positives = 128/177 (72%), Gaps = 2/177 (1%)
Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
+ Q + + + +S +++ D + WAR S+ +TFGLACCAV
Sbjct: 35 KGATDCQPTQDVPRKP--YSPFQDTKNLGEYVLARTDDFINWARKSSIFPLTFGLACCAV 92
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
EMM + PRYD++RFG RASPRQ+D++IVAGTLTNKMA LR++YDQM P++VISMG
Sbjct: 93 EMMHMAAPRYDMDRFGVVFRASPRQADLIIVAGTLTNKMAPLLRKIYDQMLSPKWVISMG 152
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+Y +LLLQKKI+ +
Sbjct: 153 SCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALLYAVLLLQKKIKTNKYAQ 209
>gi|261197135|ref|XP_002624970.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis
SLH14081]
gi|239595600|gb|EEQ78181.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis
SLH14081]
gi|239606495|gb|EEQ83482.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis
ER-3]
gi|327356325|gb|EGE85182.1| NADH-ubiquinone oxidoreductase subunit B [Ajellomyces dermatitidis
ATCC 18188]
Length = 223
Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats.
Identities = 111/165 (67%), Positives = 128/165 (77%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+++ ++ F +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD
Sbjct: 54 PRIEVPLPSQEKKVGAMQFALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQ 113
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
+R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYS
Sbjct: 114 DRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYS 173
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R +
Sbjct: 174 YSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTRITR 218
>gi|195574757|ref|XP_002105350.1| GD21440 [Drosophila simulans]
gi|194201277|gb|EDX14853.1| GD21440 [Drosophila simulans]
Length = 212
Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats.
Identities = 108/144 (75%), Positives = 125/144 (86%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAG
Sbjct: 64 ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 123
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP
Sbjct: 124 TLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 183
Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
PTAEAL+YGIL LQKK++R+ ++
Sbjct: 184 PTAEALMYGILQLQKKVKRMRTLQ 207
>gi|322421849|ref|YP_004201072.1| NADH-quinone oxidoreductase subunit B [Geobacter sp. M18]
gi|320128236|gb|ADW15796.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. M18]
Length = 170
Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats.
Identities = 80/147 (54%), Positives = 108/147 (73%), Gaps = 1/147 (0%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
+ TS+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASPRQSD
Sbjct: 9 DNIITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASPRQSDC 68
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
+I+AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D +PVD+Y
Sbjct: 69 IIIAGTVTQKMLPVIKTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDEALPVDVY 127
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGN 182
+PGCPP EAL+YG++ LQ KI + N
Sbjct: 128 IPGCPPRPEALLYGLMKLQDKISKEKN 154
>gi|171677913|ref|XP_001903907.1| hypothetical protein [Podospora anserina S mat+]
gi|170937025|emb|CAP61683.1| unnamed protein product [Podospora anserina S mat+]
Length = 224
Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats.
Identities = 113/182 (62%), Positives = 134/182 (73%), Gaps = 4/182 (2%)
Query: 7 NQKIISGQSSCSLEKV-DADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGL 62
+ + L K+ + + S+ KGF+ +T++D + W R SL MTFGL
Sbjct: 38 DAGAVQPHGGYGLSKLHERKEVPLPSQEGTKGFVQYALTTLDIITNWGRQSSLWPMTFGL 97
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+
Sbjct: 98 ACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRW 157
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDR+VPVD+YVPGCPPT+EAL+YGI LQ+K+R
Sbjct: 158 VISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKI 217
Query: 183 VK 184
+
Sbjct: 218 TR 219
>gi|163942987|ref|YP_001647871.1| NADH dehydrogenase subunit B [Bacillus weihenstephanensis KBAB4]
gi|238055233|sp|A9VS97|NUOB_BACWK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|163865184|gb|ABY46243.1| NADH-quinone oxidoreductase, B subunit [Bacillus weihenstephanensis
KBAB4]
Length = 172
Score = 227 bits (578), Expect = 7e-58, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 111/160 (69%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+ + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG
Sbjct: 6 EELHPQERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFG 65
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV
Sbjct: 66 SFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVV 125
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+G D+IVPVD+Y+PGCPP ALIYGI L++KIR
Sbjct: 126 KGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIRYEART 165
>gi|304407748|ref|ZP_07389399.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus
curdlanolyticus YK9]
gi|304343231|gb|EFM09074.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus
curdlanolyticus YK9]
Length = 170
Score = 227 bits (578), Expect = 8e-58, Method: Composition-based stats.
Identities = 86/149 (57%), Positives = 110/149 (73%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+ + +++Q+ WAR+ SL +TFGLACCA+EMM YDL+RFG R SPRQ+D
Sbjct: 17 ERNVFLGTLEQVKAWARSNSLWPLTFGLACCAIEMMGTGASHYDLDRFGVMFRTSPRQAD 76
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGT+T KM LRR+YDQMPEP++VI+MGSCA GG Y SY+V++G D+IVPVD+
Sbjct: 77 VMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYAVIKGVDQIVPVDV 136
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
Y+PGCPP+ ALIYGI LQ+KIR
Sbjct: 137 YIPGCPPSPAALIYGINKLQEKIRYEAKT 165
>gi|302879341|ref|YP_003847905.1| NADH-quinone oxidoreductase, B subunit [Gallionella
capsiferriformans ES-2]
gi|302582130|gb|ADL56141.1| NADH-quinone oxidoreductase, B subunit [Gallionella
capsiferriformans ES-2]
Length = 160
Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats.
Identities = 113/153 (73%), Positives = 127/153 (83%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
I KG + T++D ++ + RTGSL MTFGLACCAVEMMQA RYDL+RFG R SP
Sbjct: 4 EGILEKGVVTTTLDTIINYTRTGSLWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDVMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVDIYVPGCPPTAEAL+YG++ LQ KI+R +
Sbjct: 124 PVDIYVPGCPPTAEALLYGLIQLQNKIKRTNTI 156
>gi|114053179|ref|NP_001040530.1| NADH-ubiquinone oxidoreductase 20 kDa subunit precursor [Bombyx
mori]
gi|95102896|gb|ABF51389.1| NADH-ubiquinone oxidoreductase 20 kDa subunit precursor [Bombyx
mori]
Length = 235
Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats.
Identities = 99/151 (65%), Positives = 123/151 (81%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ ++V D ++ W R S+ +TFGLACCA+EMM + PRYD++R G R +PRQ+
Sbjct: 80 STAEWVVARADDILNWGRRNSVWPLTFGLACCALEMMHYAGPRYDMDRLGMVFRGTPRQT 139
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DV+IVAGT+TNKMA ALR+ YD MPEPR+V+SMGSCANGGGYYHY+YS VRGCDRIVPVD
Sbjct: 140 DVIIVAGTVTNKMAPALRKTYDLMPEPRWVVSMGSCANGGGYYHYTYSTVRGCDRIVPVD 199
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IYVPGCPPTAEAL+YG+L LQKKI+R+ V+
Sbjct: 200 IYVPGCPPTAEALLYGMLQLQKKIKRMRVVQ 230
>gi|218767068|ref|YP_002341580.1| NADH dehydrogenase subunit B [Neisseria meningitidis Z2491]
gi|218527997|sp|A1INN9|NUOB_NEIMA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|121051076|emb|CAM07346.1| NADH dehydrogenase I chain B [Neisseria meningitidis Z2491]
Length = 160
Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats.
Identities = 110/149 (73%), Positives = 128/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ+D
Sbjct: 8 KKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQAD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTLTNKMASALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPVD+
Sbjct: 68 LMIVAGTLTNKMASALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYG++ LQ+KI+R +
Sbjct: 128 YVPGCPPTAEALIYGLIQLQQKIKRTSTI 156
>gi|332881564|ref|ZP_08449213.1| NADH-quinone oxidoreductase subunit B [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332680562|gb|EGJ53510.1| NADH-quinone oxidoreductase subunit B [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 204
Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 111/166 (66%), Gaps = 3/166 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + R++ ++ G ++ ++D L+ W R+ SL +TFG +CCA+E M RYD
Sbjct: 19 KNNDYLLRMAEKLNRDGAGIVLGTLDDLINWGRSNSLWSLTFGTSCCAIEFMALGAARYD 78
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
+ RFGF R SPRQ+D+++V GT+T +MA L+R+YDQM EP+YV+++G C GG +
Sbjct: 79 MARFGFEVTRNSPRQADMIMVLGTITYRMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFR 138
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SY VV G DRI+PVD+Y+PGCPP EA YG++ LQ+KI+ +
Sbjct: 139 RSYHVVNGIDRIIPVDVYIPGCPPRPEAFFYGMMQLQRKIKMERFL 184
>gi|195503274|ref|XP_002098583.1| GE23857 [Drosophila yakuba]
gi|194184684|gb|EDW98295.1| GE23857 [Drosophila yakuba]
Length = 212
Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats.
Identities = 108/144 (75%), Positives = 125/144 (86%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+D L+ W R GSL +TFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAG
Sbjct: 64 ARLDDLLNWGRKGSLWPLTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAG 123
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP
Sbjct: 124 TLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 183
Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
PTAEAL+YGIL LQKK++R+ ++
Sbjct: 184 PTAEALMYGILQLQKKVKRMRTLQ 207
>gi|296828066|ref|XP_002851269.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma otae CBS
113480]
gi|238838823|gb|EEQ28485.1| NADH dehydrogenase iron-sulfur protein 7 [Arthroderma otae CBS
113480]
Length = 227
Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats.
Identities = 119/184 (64%), Positives = 136/184 (73%), Gaps = 4/184 (2%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTF 60
T + + S SS K + S+ +G L +T++DQ+ WAR GSL MTF
Sbjct: 40 TEQSGALQSTASSVPARK-PRREVPLPSQEKPQGVLDYALTTLDQVANWARQGSLWPMTF 98
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEP
Sbjct: 99 GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEP 158
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R
Sbjct: 159 RWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNT 218
Query: 181 GNVK 184
+
Sbjct: 219 KITR 222
>gi|39995448|ref|NP_951399.1| NADH dehydrogenase I subunit B [Geobacter sulfurreducens PCA]
gi|81703477|sp|Q74GA7|NUOB_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|39982211|gb|AAR33672.1| NADH dehydrogenase I, B subunit [Geobacter sulfurreducens PCA]
gi|298504447|gb|ADI83170.1| NADH dehydrogenase I, B subunit [Geobacter sulfurreducens KN400]
Length = 170
Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats.
Identities = 82/152 (53%), Positives = 108/152 (71%), Gaps = 1/152 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ F+ TS+D LV WAR S+ MTFGLACCA+EMM DL+RFG RASP
Sbjct: 4 DQPLGDNFITTSLDSLVNWARKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD +I+AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D +
Sbjct: 64 RQSDCIIIAGTVTKKMLPVIKTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDTAL 122
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
PVD+Y+PGCPP EAL+YG+L LQ KI + N
Sbjct: 123 PVDVYIPGCPPRPEALLYGLLKLQDKIMKDKN 154
>gi|255943669|ref|XP_002562602.1| Pc20g00390 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587337|emb|CAP85368.1| Pc20g00390 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 230
Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats.
Identities = 116/186 (62%), Positives = 138/186 (74%), Gaps = 8/186 (4%)
Query: 7 NQKIISGQSSCSLEKVDADFSR-----ISSEITHKG---FLVTSVDQLVTWARTGSLMWM 58
+ + Q S S +++ A + S+ +G + +T++DQ+ WAR SL M
Sbjct: 40 SATALERQPSASAQQLTASGKARREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPM 99
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 100 TFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMP 159
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+PR+VISMGSCANGGGYYHYSYSVVRGCDR+VPVDIYVPGCPPT+EAL+YGI LQKK+R
Sbjct: 160 DPRWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTSEALMYGIFQLQKKMR 219
Query: 179 RVGNVK 184
+
Sbjct: 220 HTRITR 225
>gi|194906298|ref|XP_001981347.1| GG11669 [Drosophila erecta]
gi|190655985|gb|EDV53217.1| GG11669 [Drosophila erecta]
Length = 212
Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats.
Identities = 109/144 (75%), Positives = 125/144 (86%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+D L+ W R GSL MTFGLACCAVEMM + PRYD++R+G RASPRQ+DV+IVAG
Sbjct: 64 ARLDDLLNWGRKGSLWPMTFGLACCAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAG 123
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TLTNKMA A R+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP
Sbjct: 124 TLTNKMAPAFRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 183
Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
PTAEAL+YGIL LQKK++R+ ++
Sbjct: 184 PTAEALMYGILQLQKKVKRMRTLQ 207
>gi|302753456|ref|XP_002960152.1| hypothetical protein SELMODRAFT_270168 [Selaginella moellendorffii]
gi|302804466|ref|XP_002983985.1| hypothetical protein SELMODRAFT_156186 [Selaginella moellendorffii]
gi|300148337|gb|EFJ14997.1| hypothetical protein SELMODRAFT_156186 [Selaginella moellendorffii]
gi|300171091|gb|EFJ37691.1| hypothetical protein SELMODRAFT_270168 [Selaginella moellendorffii]
Length = 200
Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats.
Identities = 108/147 (73%), Positives = 124/147 (84%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+++ +D ++ + R GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD M
Sbjct: 48 NFVISKLDSVINYVRAGSIWPMTFGLACCAVEMMHTGAARYDLDRFGMIFRPSPRQSDCM 107
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALRRVYDQMPEPR+V+SMGSCANGGGYYHYSY+VVRGCDRIVPVDIYV
Sbjct: 108 IVAGTLTNKMAPALRRVYDQMPEPRWVVSMGSCANGGGYYHYSYAVVRGCDRIVPVDIYV 167
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183
PGCPPTAEAL+YG+L LQKKI+R +
Sbjct: 168 PGCPPTAEALLYGLLQLQKKIKRRKQI 194
>gi|281202313|gb|EFA76518.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Polysphondylium
pallidum PN500]
Length = 178
Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats.
Identities = 115/170 (67%), Positives = 133/170 (78%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
Q+ L K+ A + + + +++ +D LV WARTGSL MTFGLACCAVEMM
Sbjct: 3 QAGQHLSKLLASSFKAAPPSSVPEIVISKLDGLVNWARTGSLWPMTFGLACCAVEMMHGY 62
Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
RYDL+RFG PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYVISMGSCANGG
Sbjct: 63 AARYDLDRFGIIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPLPRYVISMGSCANGG 122
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GYYHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YG+L LQKKI R +
Sbjct: 123 GYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGVLQLQKKINREQAL 172
>gi|225680692|gb|EEH18976.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides
brasiliensis Pb03]
Length = 228
Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats.
Identities = 116/188 (61%), Positives = 134/188 (71%), Gaps = 7/188 (3%)
Query: 4 TTVNQKIISGQSSCSLE----KVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLM 56
T ++ Q S + + S+ G F +T++DQ+ WAR SL
Sbjct: 36 TRNASTAVAKQEHASSQLTATGKPRREVPLPSQEKKGGAMQFALTTLDQVTNWARQSSLW 95
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
MTFGLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQ
Sbjct: 96 PMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQ 155
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
MP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK
Sbjct: 156 MPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKK 215
Query: 177 IRRVGNVK 184
+R+ +
Sbjct: 216 MRQTRITR 223
>gi|17509685|ref|NP_492445.1| NADH Ubiquinone oxidoreductase Fe-S protein family member (nduf-7)
[Caenorhabditis elegans]
gi|3024249|sp|Q94360|NDUS7_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur
protein 7, mitochondrial; AltName: Full=Complex I-20kD;
Short=CI-20kD; AltName: Full=NADH-ubiquinone
oxidoreductase 20 kDa subunit; Flags: Precursor
gi|3880584|emb|CAB02132.1| C. elegans protein W10D5.2, confirmed by transcript evidence
[Caenorhabditis elegans]
Length = 199
Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats.
Identities = 99/179 (55%), Positives = 134/179 (74%), Gaps = 1/179 (0%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+ + I+ S + + + + + + + +D ++ A+ GS+ +TFGLACC
Sbjct: 17 ASTQAIASNSEAP-KGIATTGTPFLNPSSKAEYALARLDDVLNLAQRGSIWPLTFGLACC 75
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
AVEMM + PRYD++R+G RASPRQ+D++ VAGT+TNKMA ALRR+YDQMPE ++VIS
Sbjct: 76 AVEMMHFAAPRYDMDRYGVVFRASPRQADLIFVAGTVTNKMAPALRRIYDQMPEAKWVIS 135
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
MGSCANGGGYYHY+YSV+RGCDR++PVDIYVPGCPPTAEAL+YG+L LQKKI+R +
Sbjct: 136 MGSCANGGGYYHYAYSVLRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKIKRKREAQ 194
>gi|332885916|gb|EGK06160.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas mossii DSM
22836]
Length = 194
Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats.
Identities = 78/164 (47%), Positives = 107/164 (65%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
+ + E+ G +V +D L+ W R+ S+ + F +CC +E M ++ RYD
Sbjct: 17 RDNEYLEDYVKELNEGGVPVIVGKLDDLINWGRSNSVWPLAFATSCCGIEFMASAAARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
L RFG R SPRQ+D M+VAGT+ +KMA L+RVYDQM EP+YV++MGSCA GG +
Sbjct: 77 LARFGMEVTRNSPRQADTMVVAGTIVHKMAPLLKRVYDQMAEPKYVVAMGSCAISGGPFV 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY VV+G D I+PVD+YVPGCPP EAL YG++ LQ+KI+
Sbjct: 137 DSYHVVKGIDEIIPVDVYVPGCPPRPEALFYGLMQLQRKIKVER 180
>gi|59802071|ref|YP_208783.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA 1090]
gi|240017450|ref|ZP_04723990.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae FA6140]
gi|240129042|ref|ZP_04741703.1| NADH dehydrogenase subunit B [Neisseria gonorrhoeae SK-93-1035]
gi|268687420|ref|ZP_06154282.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-93-1035]
gi|293398111|ref|ZP_06642316.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae F62]
gi|75355476|sp|Q5F616|NUOB_NEIG1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|59718966|gb|AAW90371.1| putative NADH dehydrogenase I chain B [Neisseria gonorrhoeae FA
1090]
gi|268627704|gb|EEZ60104.1| NADH dehydrogenase subunit I B [Neisseria gonorrhoeae SK-93-1035]
gi|291611374|gb|EFF40444.1| NADH-quinone oxidoreductase subunit B [Neisseria gonorrhoeae F62]
Length = 160
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 109/149 (73%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS D ++ RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ+D
Sbjct: 8 KKGFITTSADTVLNHMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQAD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPVD+
Sbjct: 68 LMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALIYG++ LQ+KI+R +
Sbjct: 128 YVPGCPPTAEALIYGLIQLQQKIKRTSTI 156
>gi|329118899|ref|ZP_08247594.1| NADH-quinone oxidoreductase subunit B [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464927|gb|EGF11217.1| NADH-quinone oxidoreductase subunit B [Neisseria bacilliformis ATCC
BAA-1200]
Length = 159
Score = 226 bits (577), Expect = 1e-57, Method: Composition-based stats.
Identities = 111/149 (74%), Positives = 128/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQSD
Sbjct: 8 NKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+VPVD+
Sbjct: 68 LMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGLIQLQGKIKRTYTI 156
>gi|332826700|gb|EGJ99522.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas gadei ATCC
BAA-286]
Length = 197
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 79/166 (47%), Positives = 108/166 (65%), Gaps = 3/166 (1%)
Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + E+ G +V +D L+ W R+ S+ + F +CC +E M ++ RYD
Sbjct: 24 KDNEYLEDYIKELNENGVPVVVGKLDDLINWGRSNSVWPLAFATSCCGIEFMASAAARYD 83
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
L RFG R SPRQ+D M+VAGT+ +KMA L+RVYDQM EP+YV++MGSCA GG +
Sbjct: 84 LARFGMEVTRNSPRQADTMVVAGTIVHKMAPLLKRVYDQMAEPKYVVAMGSCAISGGPFV 143
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SY VV+G D I+PVD+YVPGCPP EAL YG++ LQ+KI+ +
Sbjct: 144 DSYHVVKGIDEIMPVDVYVPGCPPRPEALFYGLMQLQRKIKVERFL 189
>gi|226292374|gb|EEH47794.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides
brasiliensis Pb18]
Length = 228
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 116/188 (61%), Positives = 134/188 (71%), Gaps = 7/188 (3%)
Query: 4 TTVNQKIISGQSSCSLE----KVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLM 56
T ++ Q S + + S+ G F +T++DQ+ WAR SL
Sbjct: 36 TRNASTAVAKQEHASSQLTATGKPRREVPLPSQEKKGGAMQFALTTLDQVTNWARQSSLW 95
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
MTFGLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQ
Sbjct: 96 PMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQ 155
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
MP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK
Sbjct: 156 MPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKK 215
Query: 177 IRRVGNVK 184
+R+ +
Sbjct: 216 MRQTRITR 223
>gi|217075608|gb|ACJ86164.1| unknown [Medicago truncatula]
Length = 198
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 111/141 (78%), Positives = 123/141 (87%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
++++ VD L+ WARTGS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD M
Sbjct: 58 EYVISKVDNLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCM 117
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 118 IVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 177
Query: 157 PGCPPTAEALIYGILLLQKKI 177
PGCPPTAEAL+YG+L LQKKI
Sbjct: 178 PGCPPTAEALLYGLLQLQKKI 198
>gi|268566427|ref|XP_002639719.1| Hypothetical protein CBG12445 [Caenorhabditis briggsae]
gi|300681044|sp|A8XFG2|NDUS7_CAEBR RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur
protein 7, mitochondrial; Flags: Precursor
gi|187029568|emb|CAP31423.1| CBR-NDUF-7 protein [Caenorhabditis briggsae AF16]
Length = 199
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 99/179 (55%), Positives = 134/179 (74%), Gaps = 1/179 (0%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+ + I+ S + + + + + + + +D ++ A+ GS+ +TFGLACC
Sbjct: 17 ASTQAIASNSEAP-KGIATTGTPFLNPSSKAEYALARLDDVMNLAQRGSIWPLTFGLACC 75
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
AVEMM + PRYD++R+G RASPRQ+D++ VAGT+TNKMA ALRR+YDQMPE ++VIS
Sbjct: 76 AVEMMHFAAPRYDMDRYGVVFRASPRQADLIFVAGTVTNKMAPALRRIYDQMPEAKWVIS 135
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
MGSCANGGGYYHY+YSV+RGCDR++PVDIYVPGCPPTAEAL+YG+L LQKKI+R +
Sbjct: 136 MGSCANGGGYYHYAYSVLRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKIKRKREAQ 194
>gi|308500063|ref|XP_003112217.1| CRE-NDUF-7 protein [Caenorhabditis remanei]
gi|308268698|gb|EFP12651.1| CRE-NDUF-7 protein [Caenorhabditis remanei]
Length = 199
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 99/179 (55%), Positives = 134/179 (74%), Gaps = 1/179 (0%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+ + I+ S + + + + + + + +D ++ A+ GS+ +TFGLACC
Sbjct: 17 ASTQAIASNSEAP-KGIATTGTPFLNPSSKAEYALARLDDVMNLAQRGSIWPLTFGLACC 75
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
AVEMM + PRYD++R+G RASPRQ+D++ VAGT+TNKMA ALRR+YDQMPE ++VIS
Sbjct: 76 AVEMMHFAAPRYDMDRYGVVFRASPRQADLIFVAGTVTNKMAPALRRIYDQMPEAKWVIS 135
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
MGSCANGGGYYHY+YSV+RGCDR++PVDIYVPGCPPTAEAL+YG+L LQKKI+R +
Sbjct: 136 MGSCANGGGYYHYAYSVLRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKIKRKREAQ 194
>gi|18461218|dbj|BAB84415.1| putative NADH2 dehydrogenase (ubiquinone) chain PSST precursor
[Oryza sativa Japonica Group]
gi|125527525|gb|EAY75639.1| hypothetical protein OsI_03544 [Oryza sativa Indica Group]
gi|222619176|gb|EEE55308.1| hypothetical protein OsJ_03280 [Oryza sativa Japonica Group]
Length = 199
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 113/145 (77%), Positives = 123/145 (84%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+++ VD L+ WAR GS+ MTFGLACCAVEMM A RYD +RFG R SPRQSD M
Sbjct: 47 EFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGASRYDFDRFGVIFRPSPRQSDCM 106
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 107 IVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 166
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPPTAEAL+YG+L LQKKI R
Sbjct: 167 PGCPPTAEALLYGVLQLQKKINRRK 191
>gi|257095318|ref|YP_003168959.1| NADH dehydrogenase subunit B [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257047842|gb|ACV37030.1| NADH-quinone oxidoreductase, B subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 158
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 111/153 (72%), Positives = 128/153 (83%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
I +GF+ T+ D+L+ + RTGSL M+FGLACCA+EM+ A RYDL+RFG R SP
Sbjct: 4 EGILQEGFVTTTADKLINYVRTGSLWPMSFGLACCAIEMIHAGCSRYDLDRFGIVFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVM+VAGTLTNKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDVMVVAGTLTNKMAPAMRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVDIYVPGCPPTAEALIYG++ LQ KIRR +
Sbjct: 124 PVDIYVPGCPPTAEALIYGLIQLQNKIRRTNTI 156
>gi|224284596|gb|ACN40031.1| unknown [Picea sitchensis]
Length = 205
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 112/170 (65%), Positives = 132/170 (77%), Gaps = 1/170 (0%)
Query: 15 SSCSLEKVDADFSRISSEITHK-GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
+ S ++ ++ ++ ++++ +D LV WAR GS+ MTFGLACCAVEMM
Sbjct: 30 AGSSSLSAPTPYNPSATGLSKPAEYVISKIDALVNWARKGSIWPMTFGLACCAVEMMHTG 89
Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
RYDL+RFG R SPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGG
Sbjct: 90 AARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGG 149
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI R ++
Sbjct: 150 RYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIHRRKDL 199
>gi|49188135|ref|YP_031388.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Sterne]
gi|49481270|ref|YP_039290.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52140262|ref|YP_086568.1| NADH dehydrogenase subunit B [Bacillus cereus E33L]
gi|65317275|ref|ZP_00390234.1| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related
Fe-S oxidoreductases [Bacillus anthracis str. A2012]
gi|75762936|ref|ZP_00742740.1| NADH-quinone oxidoreductase chain B [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|118480339|ref|YP_897490.1| NADH dehydrogenase subunit B [Bacillus thuringiensis str. Al Hakam]
gi|81394192|sp|Q6HAY6|NUOB_BACHK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81685364|sp|Q630U9|NUOB_BACCZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065057|sp|A0RL90|NUOB_BACAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|49182062|gb|AAT57438.1| NADH dehydrogenase I, B subunit [Bacillus anthracis str. Sterne]
gi|49332826|gb|AAT63472.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain
B) [Bacillus thuringiensis serovar konkukian str. 97-27]
gi|51973731|gb|AAU15281.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain
B) [Bacillus cereus E33L]
gi|74489578|gb|EAO52990.1| NADH-quinone oxidoreductase chain B [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|118419564|gb|ABK87983.1| NADH dehydrogenase subunit B [Bacillus thuringiensis str. Al Hakam]
Length = 179
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 111/160 (69%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+ + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG
Sbjct: 13 EELHPNERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFG 72
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV
Sbjct: 73 SFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVV 132
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+G D+IVPVD+Y+PGCPP ALIYGI L++KIR
Sbjct: 133 KGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIRYEAKT 172
>gi|291280356|ref|YP_003497191.1| NADH-quinone oxidoreductase subunit B [Deferribacter desulfuricans
SSM1]
gi|290755058|dbj|BAI81435.1| NADH-quinone oxidoreductase, B subunit [Deferribacter desulfuricans
SSM1]
Length = 158
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 80/149 (53%), Positives = 110/149 (73%), Gaps = 1/149 (0%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
+ ++D ++ WAR S+ +TFGLACCA+EMM A +YDL+R G RA+PRQ+D+
Sbjct: 10 DNIITATIDGVINWARKSSIWPVTFGLACCAIEMMAAGASKYDLDRLGVIFRATPRQADL 69
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIVAGT+T KMA +R+VYDQMPEP++VI+MGSCA GG ++ +YS V+G D IVPVD Y
Sbjct: 70 MIVAGTVTRKMAPVVRKVYDQMPEPKWVIAMGSCATSGGIFN-TYSTVQGVDEIVPVDFY 128
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PGCPP EAL+ I+ LQ+KI+ ++
Sbjct: 129 IPGCPPRPEALLDAIVALQEKIKHDKILR 157
>gi|212640517|ref|YP_002317037.1| NADH dehydrogenase subunit B [Anoxybacillus flavithermus WK1]
gi|238065054|sp|B7GMF0|NUOB_ANOFW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|212561997|gb|ACJ35052.1| NADH dehydrogenase subunit B [Anoxybacillus flavithermus WK1]
Length = 177
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 90/159 (56%), Positives = 113/159 (71%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ S E + +T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG
Sbjct: 14 NVSDQEMEEMRRNVFLTTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGSSHYDLDRFGS 73
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY VV+
Sbjct: 74 FFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVKSYCVVK 133
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
G D+IVPVD+Y+PGCPP ALIYGI L++KIR
Sbjct: 134 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIRYEAKT 172
>gi|158291431|ref|XP_312939.3| AGAP003231-PA [Anopheles gambiae str. PEST]
gi|157017771|gb|EAA08348.4| AGAP003231-PA [Anopheles gambiae str. PEST]
Length = 220
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 108/155 (69%), Positives = 129/155 (83%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
+ + + V +D L+ W R GS+ FGLACCA+EMMQA+ PRYD++RFG RAS
Sbjct: 61 AKQSNTAEWTVARLDDLLNWGRKGSMWPTMFGLACCAMEMMQAAAPRYDIDRFGVLFRAS 120
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D +IVAGTLTNKMA ALR++YDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 121 PRQTDFIIVAGTLTNKMAPALRKIYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 180
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PVDIYVPGCPPTAEALIYG+L LQKK++R+ V+
Sbjct: 181 IPVDIYVPGCPPTAEALIYGVLQLQKKVKRMKTVQ 215
>gi|62263125|gb|AAX78129.1| unknown protein [synthetic construct]
Length = 193
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 112/165 (67%), Positives = 128/165 (77%)
Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
++ D + +KGF+ S D L+ W RTGSL +T GLACCAVEMM A RYD
Sbjct: 17 IDDDDKHMLEVGIGNENKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYD 76
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
L+RFG R SPRQSDV+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHY
Sbjct: 77 LDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHY 136
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGI+ LQ KI R +
Sbjct: 137 SYSVVRGCDRIVPVDIYVPGCPPTAEALVYGIIQLQNKIIRKDTI 181
>gi|322694377|gb|EFY86208.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit
[Metarhizium acridum CQMa 102]
Length = 367
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 114/181 (62%), Positives = 133/181 (73%), Gaps = 3/181 (1%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLA 63
+ ++ + S + SE KG + +T++D + WAR SL MTFGLA
Sbjct: 182 DASSLTPHGAGSSLAKPRKEVLLPSEEGTKGVVQYALTTLDVIANWARQSSLWPMTFGLA 241
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+V
Sbjct: 242 CCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWV 301
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R
Sbjct: 302 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNTKIT 361
Query: 184 K 184
+
Sbjct: 362 R 362
>gi|282877800|ref|ZP_06286613.1| NADH-quinone oxidoreductase, B subunit [Prevotella buccalis ATCC
35310]
gi|281300116|gb|EFA92472.1| NADH-quinone oxidoreductase, B subunit [Prevotella buccalis ATCC
35310]
Length = 231
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 81/164 (49%), Positives = 109/164 (66%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + RI E+ G + S+DQL+ W R SL +TF +CC +E M RYD
Sbjct: 17 KDNESLERIVDELHEGGVNVVTGSLDQLINWGRANSLWSLTFATSCCGIEFMAVGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA A RR+YD+M EP+YVI++G CA GG +
Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFRRLYDEMAEPKYVIAVGGCAISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY VVRG D IVPVD+++PGCPP EA++YG++ LQ+KI+
Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKIKVEK 180
>gi|295400695|ref|ZP_06810672.1| NADH-quinone oxidoreductase, B subunit [Geobacillus
thermoglucosidasius C56-YS93]
gi|312112611|ref|YP_003990927.1| NADH-quinone oxidoreductase subunit beta [Geobacillus sp. Y4.1MC1]
gi|294977276|gb|EFG52877.1| NADH-quinone oxidoreductase, B subunit [Geobacillus
thermoglucosidasius C56-YS93]
gi|311217712|gb|ADP76316.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. Y4.1MC1]
Length = 170
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 93/159 (58%), Positives = 114/159 (71%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
D E + +T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG
Sbjct: 7 DVPEGEMEEIKRNVFLTTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGGSHYDLDRFGS 66
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
RASPRQSDVMIV+GT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+
Sbjct: 67 FFRASPRQSDVMIVSGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVK 126
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
G D+IVPVD+Y+PGCPP ALIYGI L++KIR
Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIRYEAKT 165
>gi|282881432|ref|ZP_06290106.1| NADH-quinone oxidoreductase, B subunit [Prevotella timonensis CRIS
5C-B1]
gi|281304658|gb|EFA96744.1| NADH-quinone oxidoreductase, B subunit [Prevotella timonensis CRIS
5C-B1]
Length = 231
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 81/164 (49%), Positives = 109/164 (66%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + RI E+ G + S+DQL+ W R SL +TF +CC +E M RYD
Sbjct: 17 KDNESLERIVDELHEGGVNVVTGSLDQLINWGRANSLWSLTFATSCCGIEFMAVGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA A RR+YD+M EP+YVI++G CA GG +
Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFRRLYDEMAEPKYVIAVGGCAISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY VVRG D IVPVD+++PGCPP EA++YG++ LQ+KI+
Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKIKVEK 180
>gi|295673086|ref|XP_002797089.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides
brasiliensis Pb01]
gi|226282461|gb|EEH38027.1| NADH dehydrogenase iron-sulfur protein [Paracoccidioides
brasiliensis Pb01]
Length = 228
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 113/165 (68%), Positives = 127/165 (76%), Gaps = 3/165 (1%)
Query: 23 DADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ S+ G F +T++DQ+ WAR SL MTFGLACCAVEMM S PRYD
Sbjct: 59 PRREVPLPSQEKKGGAMQFALTTLDQVTNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQ 118
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
+R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYS
Sbjct: 119 DRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYS 178
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R +
Sbjct: 179 YSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTRITR 223
>gi|255732844|ref|XP_002551345.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
gi|240131086|gb|EER30647.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor [Candida tropicalis MYA-3404]
Length = 212
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 108/167 (64%), Positives = 130/167 (77%), Gaps = 2/167 (1%)
Query: 20 EKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
+ + DF +S + +++TS+D + WAR S +TFGLACCAVEMM S PRY
Sbjct: 41 QTLPTDFPLMSEKKATNAADYVLTSLDAIANWARKSSFWPVTFGLACCAVEMMHVSAPRY 100
Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
D +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMP+P++VISMGSCANGGGYYH
Sbjct: 101 DQDRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYH 160
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSYSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+ LQKK+ + +
Sbjct: 161 YSYSVVRGCDRVVPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRITR 207
>gi|3025802|gb|AAC12755.1| NADH-ubiqionone oxidoreductase subunit NuoB [Sinorhizobium
meliloti]
Length = 165
Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats.
Identities = 130/158 (82%), Positives = 141/158 (89%), Gaps = 1/158 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSL-MWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
I++E+ KGFLVTS D+L+ WARTGSL LACCAVEMMQ SMPRYD ERFGFAP
Sbjct: 7 EINNELADKGFLVTSTDELINWARTGSLMWNELSVLACCAVEMMQMSMPRYDAERFGFAP 66
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC
Sbjct: 67 RASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
DR+VPVDIYVPGCPPTAEAL+YG+LLLQKKIRR G ++
Sbjct: 127 DRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRRTGTIE 164
>gi|270008238|gb|EFA04686.1| hypothetical protein TcasGA2_TC014482 [Tribolium castaneum]
Length = 204
Score = 226 bits (575), Expect = 1e-57, Method: Composition-based stats.
Identities = 105/174 (60%), Positives = 136/174 (78%), Gaps = 4/174 (2%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
I +S+C + + F + +++ +D L+ W R S+ +TFGLACCA+EMM
Sbjct: 28 IRCESTCPERRPYSPFRPKNQT----EWVLARLDDLLNWGRKTSMWPLTFGLACCAIEMM 83
Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
+ PRYD++R+G RASPRQ++V+IVAGT+TNKMA++LR+VYDQMPEPR+VISMGSCA
Sbjct: 84 HIAAPRYDMDRYGVVFRASPRQTEVIIVAGTVTNKMAASLRKVYDQMPEPRWVISMGSCA 143
Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
NGGGYYHYSYSVVRGC+RI+PVDIYVPGCPPTAEAL+YGIL LQKK+ R ++
Sbjct: 144 NGGGYYHYSYSVVRGCNRIIPVDIYVPGCPPTAEALMYGILQLQKKVNRHNAIQ 197
>gi|294661316|ref|YP_003573192.1| hypothetical protein Aasi_1809 [Candidatus Amoebophilus asiaticus
5a2]
gi|227336467|gb|ACP21064.1| hypothetical protein Aasi_1809 [Candidatus Amoebophilus asiaticus
5a2]
Length = 173
Score = 226 bits (575), Expect = 1e-57, Method: Composition-based stats.
Identities = 93/163 (57%), Positives = 120/163 (73%), Gaps = 1/163 (0%)
Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
+ +++ IS++ G ++ +++ L+ WA SL +TFGLACCA+EMM A YD
Sbjct: 7 INQINNYMDTISNKTGEGGVIMVALEDLLNWAERSSLWPITFGLACCAIEMMGAYASHYD 66
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH- 137
L+R G PR SPRQ+DVMIV+GT+T KMA ++RR+YDQMPEPRYVISMGSCAN GG Y
Sbjct: 67 LDRLGVIPRNSPRQADVMIVSGTVTFKMADSIRRLYDQMPEPRYVISMGSCANCGGPYWQ 126
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+ Y VV+G DRI+PVD+YVPGCPP EALI GIL LQ+KI+
Sbjct: 127 HGYHVVKGVDRIIPVDVYVPGCPPRPEALIGGILKLQEKIKAK 169
>gi|47569794|ref|ZP_00240465.1| NADH dehydrogenase I, B subunit [Bacillus cereus G9241]
gi|47553536|gb|EAL11916.1| NADH dehydrogenase I, B subunit [Bacillus cereus G9241]
Length = 172
Score = 226 bits (575), Expect = 1e-57, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 111/160 (69%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+ + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG
Sbjct: 6 EELHPNERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFG 65
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV
Sbjct: 66 SFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYINSYAVV 125
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+G D+IVPVD+Y+PGCPP ALIYGI L++KIR
Sbjct: 126 KGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIRYEAKT 165
>gi|126275592|ref|XP_001386878.1| NADH-ubiquinone oxidoreductase [Scheffersomyces stipitis CBS 6054]
gi|126212747|gb|EAZ62855.1| NADH-ubiquinone oxidoreductase [Pichia stipitis CBS 6054]
Length = 207
Score = 226 bits (575), Expect = 1e-57, Method: Composition-based stats.
Identities = 112/182 (61%), Positives = 134/182 (73%), Gaps = 3/182 (1%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGL 62
V + IS + + + DF +S + + +TS+D + WAR S +TFGL
Sbjct: 22 AVAVRYISSKDLTP-KALPTDFPLMSEKTASSPIDYALTSLDSIANWARKSSFWPVTFGL 80
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM S PRYD +R G RASPRQSD+MIVAGT+TNKMA ALR+VYDQMP+PR+
Sbjct: 81 ACCAVEMMHVSTPRYDQDRLGIIFRASPRQSDIMIVAGTVTNKMAPALRQVYDQMPDPRW 140
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+ LQKK+ +
Sbjct: 141 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRI 200
Query: 183 VK 184
+
Sbjct: 201 TR 202
>gi|121998543|ref|YP_001003330.1| NADH-quinone oxidoreductase subunit B [Halorhodospira halophila
SL1]
gi|238065156|sp|A1WXW6|NUOB_HALHL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|121589948|gb|ABM62528.1| NADH dehydrogenase subunit B [Halorhodospira halophila SL1]
Length = 158
Score = 226 bits (575), Expect = 1e-57, Method: Composition-based stats.
Identities = 114/153 (74%), Positives = 126/153 (82%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
I +G++ TS D+L+ WARTGSL MTFGLACCAVEMM + RYD++R G R SP
Sbjct: 4 EGILERGYVTTSADKLINWARTGSLWPMTFGLACCAVEMMHTAAGRYDMDRNGLIFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMIVAGTL NKMA ALR+VYDQMPEP++VISMGSCANGGGYYHYSYSV RGCDRIV
Sbjct: 64 RQSDVMIVAGTLCNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYSVTRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVDIYVPGCPPTAEAL YGIL LQ KIRR +
Sbjct: 124 PVDIYVPGCPPTAEALYYGILQLQNKIRRTNTI 156
>gi|167752198|ref|ZP_02424325.1| hypothetical protein ALIPUT_00440 [Alistipes putredinis DSM 17216]
gi|167660439|gb|EDS04569.1| hypothetical protein ALIPUT_00440 [Alistipes putredinis DSM 17216]
Length = 219
Score = 226 bits (575), Expect = 1e-57, Method: Composition-based stats.
Identities = 75/159 (47%), Positives = 110/159 (69%), Gaps = 3/159 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G ++ +D+++ W R+ SL +TF +CC +E M RYD
Sbjct: 19 NEYLEKMIEELRANGTNVVMGCLDEVINWGRSNSLWPLTFATSCCGIEFMAVGAARYDFA 78
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D ++VAGT+T+KMA LRR+YDQM +P+YVI+ GSCA GG + S
Sbjct: 79 RFGFEVARASPRQADFIMVAGTITHKMAPVLRRLYDQMADPKYVIATGSCAVSGGPFKKS 138
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
Y VV G D+I+PVD+Y+PGCPP EA++YG++ LQ+K++
Sbjct: 139 YHVVNGVDKILPVDVYIPGCPPRPEAMLYGMMQLQRKVK 177
>gi|119172964|ref|XP_001239009.1| NADH-ubiquinone oxidoreductase subunit [Coccidioides immitis RS]
Length = 213
Score = 226 bits (575), Expect = 1e-57, Method: Composition-based stats.
Identities = 105/174 (60%), Positives = 127/174 (72%), Gaps = 3/174 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
Q S + + +T+ D LV WAR GSL ++FGLACC VEMM
Sbjct: 35 QRQPSSTWSGNALKPVKHDAEKGAPLQHFLTTTDNLVNWARQGSLWPLSFGLACCGVEMM 94
Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
ASMPRYD +R G RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP+P++VISMGSCA
Sbjct: 95 SASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMPDPKWVISMGSCA 154
Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
NGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R+ +
Sbjct: 155 NGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMRKTRITR 208
>gi|239828582|ref|YP_002951206.1| NADH dehydrogenase subunit B [Geobacillus sp. WCH70]
gi|259514668|sp|C5D987|NUOB_GEOSW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|239808875|gb|ACS25940.1| NADH-quinone oxidoreductase, B subunit [Geobacillus sp. WCH70]
Length = 170
Score = 226 bits (575), Expect = 1e-57, Method: Composition-based stats.
Identities = 92/159 (57%), Positives = 114/159 (71%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
D +E + T+++QL WAR+ SL +TFGLACCA+EMM YDL+RFG
Sbjct: 7 DVPEGDTEELKRNVFFTTLEQLKAWARSNSLWPLTFGLACCAIEMMGVGGAHYDLDRFGS 66
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
RASPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SYSVV+
Sbjct: 67 FFRASPRQSDVMIVSGTVTKKMAPIIRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVK 126
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
G D+IVPVD+Y+PGCPP ALIYGI L++KIR
Sbjct: 127 GVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIRYEAKT 165
>gi|145612619|ref|XP_001412223.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit
[Magnaporthe oryzae 70-15]
gi|145019756|gb|EDK03984.1| mitochondrial NADH-ubiquinone oxidoreductase 20 kD subunit
[Magnaporthe oryzae 70-15]
Length = 222
Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 115/176 (65%), Positives = 134/176 (76%), Gaps = 3/176 (1%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVE 68
+ QSS L + + + S+ KG + +T++D + W R SL MTFGLACCAVE
Sbjct: 42 AAQSSTGLARPERKEVPLPSQEGTKGVVQYALTTLDIIANWGRQSSLWPMTFGLACCAVE 101
Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
MM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGS
Sbjct: 102 MMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISMGS 161
Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
CANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQ+K+R +
Sbjct: 162 CANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 217
>gi|206970223|ref|ZP_03231176.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH1134]
gi|206734800|gb|EDZ51969.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH1134]
Length = 172
Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 87/160 (54%), Positives = 111/160 (69%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+ + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG
Sbjct: 6 EELHPNERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFG 65
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV
Sbjct: 66 SFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVV 125
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+G D+I+PVD+Y+PGCPP ALIYGI L++KIR
Sbjct: 126 KGVDQILPVDVYIPGCPPNPAALIYGINKLKEKIRYEAKT 165
>gi|237748890|ref|ZP_04579370.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes
OXCC13]
gi|229380252|gb|EEO30343.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes
OXCC13]
Length = 159
Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 106/153 (69%), Positives = 128/153 (83%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ KGF+ T++D + W RTGS+ +TFGLACCA+EMM +SMPRYD++RFG RASP
Sbjct: 4 EGLMDKGFVTTTLDTAINWLRTGSVWPVTFGLACCAIEMMHSSMPRYDMDRFGTFFRASP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYH SYSVVRGCD+IV
Sbjct: 64 RQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHDSYSVVRGCDKIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVDIYVPGCPPTAEAL+Y ++ L+ KI+R +
Sbjct: 124 PVDIYVPGCPPTAEALLYALIQLRTKIKRTSTI 156
>gi|317033085|ref|XP_001394844.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus
niger CBS 513.88]
Length = 155
Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 106/148 (71%), Positives = 124/148 (83%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
++T+ DQ+V WAR GSL ++FGLACCA+EMM SMPRYD +R G RASPRQSDVM
Sbjct: 3 EHVLTTFDQIVNWARQGSLWPLSFGLACCAIEMMHVSMPRYDQDRLGIIFRASPRQSDVM 62
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGT+TNKMA ALR+ YDQMPEPR+VISMGSCANGGGYYHYSYS+VRG DRIVPVD+Y+
Sbjct: 63 IVAGTVTNKMAPALRQCYDQMPEPRWVISMGSCANGGGYYHYSYSIVRGVDRIVPVDVYI 122
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184
PGCPPTAEA +YG+ LQKKI+R +
Sbjct: 123 PGCPPTAEATLYGVFQLQKKIKRTRITR 150
>gi|225559531|gb|EEH07814.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
Length = 228
Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 115/172 (66%), Positives = 132/172 (76%), Gaps = 2/172 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
+ +K+ +F S E + +T++DQ+ WAR GSL MTFGLACCAVEMM
Sbjct: 52 PLTATDKLRREFPLPSQEKEGGAMQYALTTLDQVTNWARQGSLWPMTFGLACCAVEMMHL 111
Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANG
Sbjct: 112 STPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANG 171
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R +
Sbjct: 172 GGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTRITR 223
>gi|30023332|ref|NP_834963.1| NADH dehydrogenase subunit B [Bacillus cereus ATCC 14579]
gi|30265322|ref|NP_847699.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Ames]
gi|42784469|ref|NP_981716.1| NADH dehydrogenase subunit B [Bacillus cereus ATCC 10987]
gi|47530861|ref|YP_022210.1| NADH dehydrogenase subunit B [Bacillus anthracis str. 'Ames
Ancestor']
gi|165869972|ref|ZP_02214629.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0488]
gi|167636380|ref|ZP_02394680.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0442]
gi|167641714|ref|ZP_02399958.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0193]
gi|170689329|ref|ZP_02880523.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0465]
gi|170708828|ref|ZP_02899263.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0389]
gi|177654059|ref|ZP_02936069.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0174]
gi|190567657|ref|ZP_03020569.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis
Tsiankovskii-I]
gi|196036336|ref|ZP_03103734.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus W]
gi|196039410|ref|ZP_03106715.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
NVH0597-99]
gi|196045583|ref|ZP_03112813.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
03BB108]
gi|206976881|ref|ZP_03237783.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
H3081.97]
gi|217962788|ref|YP_002341364.1| NADH dehydrogenase subunit B [Bacillus cereus AH187]
gi|218232741|ref|YP_002370074.1| NADH dehydrogenase subunit B [Bacillus cereus B4264]
gi|218906476|ref|YP_002454310.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH820]
gi|222098770|ref|YP_002532828.1| NADH dehydrogenase subunit b [Bacillus cereus Q1]
gi|225867276|ref|YP_002752654.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
03BB102]
gi|227818062|ref|YP_002818071.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
CDC 684]
gi|229601924|ref|YP_002869514.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0248]
gi|254686278|ref|ZP_05150137.1| NADH dehydrogenase subunit B [Bacillus anthracis str. CNEVA-9066]
gi|254724274|ref|ZP_05186058.1| NADH dehydrogenase subunit B [Bacillus anthracis str. A1055]
gi|254735227|ref|ZP_05192936.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Western North
America USA6153]
gi|254744431|ref|ZP_05202111.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Kruger B]
gi|254755735|ref|ZP_05207768.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Vollum]
gi|254759532|ref|ZP_05211557.1| NADH dehydrogenase subunit B [Bacillus anthracis str. Australia 94]
gi|296505727|ref|YP_003667427.1| NADH dehydrogenase subunit B [Bacillus thuringiensis BMB171]
gi|300117809|ref|ZP_07055576.1| NADH dehydrogenase subunit B [Bacillus cereus SJ1]
gi|301056766|ref|YP_003794977.1| NADH dehydrogenase subunit beta [Bacillus anthracis CI]
gi|81408415|sp|Q72XF4|NUOB_BACC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81433046|sp|Q814W7|NUOB_BACCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81580962|sp|Q81K01|NUOB_BACAN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065058|sp|B7JGM4|NUOB_BACC0 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065060|sp|B7HFJ5|NUOB_BACC4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065061|sp|B7HY57|NUOB_BACC7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065063|sp|B9IRT1|NUOB_BACCQ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|254767787|sp|C3P1E8|NUOB_BACAA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|254767788|sp|C3LFH3|NUOB_BACAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|254767789|sp|C1F0M2|NUOB_BACC3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|29898893|gb|AAP12164.1| NADH-quinone oxidoreductase chain B [Bacillus cereus ATCC 14579]
gi|30260000|gb|AAP29185.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
Ames]
gi|42740401|gb|AAS44324.1| NADH dehydrogenase I, B subunit [Bacillus cereus ATCC 10987]
gi|47506009|gb|AAT34685.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
'Ames Ancestor']
gi|164714295|gb|EDR19815.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0488]
gi|167510339|gb|EDR85741.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0193]
gi|167528214|gb|EDR90996.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0442]
gi|170126228|gb|EDS95120.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0389]
gi|170666697|gb|EDT17466.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0465]
gi|172080942|gb|EDT66021.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0174]
gi|190561073|gb|EDV15046.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis
Tsiankovskii-I]
gi|195991128|gb|EDX55098.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus W]
gi|196023414|gb|EDX62091.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
03BB108]
gi|196029570|gb|EDX68172.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
NVH0597-99]
gi|206744847|gb|EDZ56252.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
H3081.97]
gi|217066695|gb|ACJ80945.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH187]
gi|218160698|gb|ACK60690.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus B4264]
gi|218535886|gb|ACK88284.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus AH820]
gi|221242829|gb|ACM15539.1| NADH dehydrogenase I, subunit B (NADH-quinone oxidoreductase, chain
B) [Bacillus cereus Q1]
gi|225791042|gb|ACO31259.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus
03BB102]
gi|227004083|gb|ACP13826.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
CDC 684]
gi|229266332|gb|ACQ47969.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus anthracis str.
A0248]
gi|296326779|gb|ADH09707.1| NADH dehydrogenase subunit B [Bacillus thuringiensis BMB171]
gi|298724673|gb|EFI65348.1| NADH dehydrogenase subunit B [Bacillus cereus SJ1]
gi|300378935|gb|ADK07839.1| NADH dehydrogenase beta subunit [Bacillus cereus biovar anthracis
str. CI]
gi|324329247|gb|ADY24507.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|326943097|gb|AEA18993.1| NADH dehydrogenase subunit B [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 172
Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 111/160 (69%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+ + ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG
Sbjct: 6 EELHPNERAELERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFG 65
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV
Sbjct: 66 SFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVV 125
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+G D+IVPVD+Y+PGCPP ALIYGI L++KIR
Sbjct: 126 KGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIRYEAKT 165
>gi|319650861|ref|ZP_08004998.1| NADH dehydrogenase subunit B [Bacillus sp. 2_A_57_CT2]
gi|317397459|gb|EFV78160.1| NADH dehydrogenase subunit B [Bacillus sp. 2_A_57_CT2]
Length = 177
Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 90/160 (56%), Positives = 113/160 (70%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+ S E + + +++Q+ WAR+ SL MTFGLACCA+EMM YDL+RFG
Sbjct: 13 DNISPEEMEELQRNVFMATLEQIKAWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFG 72
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
R SPRQSDVMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SYSVV
Sbjct: 73 SFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVV 132
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+G D+IVPVD+Y+PGCPP ALIYGI L++KIR
Sbjct: 133 KGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKIRYEAKT 172
>gi|237746750|ref|ZP_04577230.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes
HOxBLS]
gi|229378101|gb|EEO28192.1| NADH-quinone oxidoreductase subunit B [Oxalobacter formigenes
HOxBLS]
Length = 159
Score = 226 bits (575), Expect = 2e-57, Method: Composition-based stats.
Identities = 105/153 (68%), Positives = 127/153 (83%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ +KGF+ T++D + W RTGS+ ++FGLACCA+EMM +S RYD++RFG RASP
Sbjct: 4 DGLLNKGFVTTTLDTAINWLRTGSVWPVSFGLACCAIEMMHSSASRYDMDRFGTFFRASP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYH SYSVVRGCDRIV
Sbjct: 64 RQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHDSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVDIYVPGCPPTAEAL+Y ++ L+ KIRR +
Sbjct: 124 PVDIYVPGCPPTAEALLYALMQLRGKIRRTSTI 156
>gi|289614329|emb|CBI58839.1| unnamed protein product [Sordaria macrospora]
Length = 230
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 113/173 (65%), Positives = 131/173 (75%), Gaps = 2/173 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
Q + + + S E T + +T++D +V WAR SL MTFGLACCAVEMM
Sbjct: 53 QHGGIVRRERREVPLASQEGTKGAVQYALTTLDSIVNWARQSSLWPMTFGLACCAVEMMH 112
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCAN
Sbjct: 113 LSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCAN 172
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQ+K+R +
Sbjct: 173 GGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 225
>gi|91789115|ref|YP_550067.1| NADH dehydrogenase subunit B [Polaromonas sp. JS666]
gi|123164659|sp|Q127X3|NUOB_POLSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|91698340|gb|ABE45169.1| NADH dehydrogenase subunit B [Polaromonas sp. JS666]
Length = 159
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 111/149 (74%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
++GF+ TS D +V WA+TGSL MTFGLACCAVEMM A RYD++RFG R SPRQSD
Sbjct: 8 NEGFMTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGMLFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTL NKM ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+
Sbjct: 68 LMIVAGTLCNKMGPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YGI+ LQ+KIRR +
Sbjct: 128 YVPGCPPTAEALLYGIIQLQQKIRRTNTI 156
>gi|206889652|ref|YP_002248950.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|238065044|sp|B5YL35|NUOB2_THEYD RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|206741590|gb|ACI20647.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 174
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ + I ++T++D++V W R+ SL +TFGLACCA+EMM A DL+RFG
Sbjct: 12 EVEEGTKIIKGSNVIITTLDKVVNWGRSNSLWPLTFGLACCAIEMMAAGASHLDLDRFGI 71
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
RASPRQ+DV+I+AGT+T KMA ++RVYDQMPEP+YVI+MGSCA GG ++ +YS V+
Sbjct: 72 LFRASPRQADVIIIAGTVTYKMAPIVKRVYDQMPEPKYVIAMGSCACTGGIFN-TYSTVQ 130
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
G D+ +PVD+YVPGCPP EAL+YG+L L++KI R
Sbjct: 131 GADQFLPVDVYVPGCPPRPEALMYGVLKLKEKIMREE 167
>gi|282860263|ref|ZP_06269333.1| NADH-quinone oxidoreductase, B subunit [Prevotella bivia
JCVIHMP010]
gi|282586937|gb|EFB92172.1| NADH-quinone oxidoreductase, B subunit [Prevotella bivia
JCVIHMP010]
Length = 301
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 76/164 (46%), Positives = 114/164 (69%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + +++S++ G ++ ++DQL+ W R+ SL +TF +CC +E M RYD
Sbjct: 17 KDNDTLDKMASDLNDGGTSLVLGNLDQLINWGRSNSLWSLTFATSCCGIEFMSVGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA AL+R+YD+M EP+YVI++G CA GG +
Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPALKRLYDEMAEPKYVIAVGGCAISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY V+RG D I+PVD+++PGCPP EA+IYG++ LQ+K++
Sbjct: 137 NSYHVMRGIDEIIPVDVFIPGCPPRPEAIIYGMMQLQRKVKIEK 180
>gi|332285016|ref|YP_004416927.1| NADH dehydrogenase subunit B [Pusillimonas sp. T7-7]
gi|330428969|gb|AEC20303.1| NADH dehydrogenase subunit B [Pusillimonas sp. T7-7]
Length = 158
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 111/153 (72%), Positives = 127/153 (83%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
I +GF+ TS D+ + WA+TGSL MTFGLACCAVEMM A RYDL++FG R SP
Sbjct: 4 DGIMKEGFITTSADKFLNWAKTGSLWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEAL+YG+L +Q KIR +
Sbjct: 124 PVDVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156
>gi|218900425|ref|YP_002448836.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus G9842]
gi|238065059|sp|B7IQV2|NUOB_BACC2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218541670|gb|ACK94064.1| NADH dehydrogenase (ubiquinone), B subunit [Bacillus cereus G9842]
Length = 172
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 88/149 (59%), Positives = 110/149 (73%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+ ++++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSD
Sbjct: 17 ERNIFFSTLEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 76
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+
Sbjct: 77 VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDV 136
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
Y+PGCPP ALIYGI L++KIR
Sbjct: 137 YIPGCPPNPAALIYGINKLKEKIRYEAKT 165
>gi|320036960|gb|EFW18898.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Coccidioides
posadasii str. Silveira]
Length = 213
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 106/186 (56%), Positives = 129/186 (69%), Gaps = 3/186 (1%)
Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWM 58
G K Q S + + +T+ D LV WAR GSL +
Sbjct: 23 GTQRPIAKATYIQRQPSSTWNGNALKPVKPDAEKGAPLQHFLTTTDNLVNWARQGSLWPL 82
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
+FGLACC +EMM ASMPRYD +R G RASPRQ+DVM+VAGT+TNKMA ALR +YDQMP
Sbjct: 83 SFGLACCGLEMMSASMPRYDQDRLGIIFRASPRQADVMLVAGTVTNKMAPALRLLYDQMP 142
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+P++VISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPGCPPT EAL+YG+ LLQK++R
Sbjct: 143 DPKWVISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPGCPPTPEALLYGVFLLQKRMR 202
Query: 179 RVGNVK 184
+ +
Sbjct: 203 KTRITR 208
>gi|74317161|ref|YP_314901.1| NADH dehydrogenase subunit B [Thiobacillus denitrificans ATCC
25259]
gi|123611053|sp|Q3SEX7|NUOB_THIDA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|74056656|gb|AAZ97096.1| NADH dehydrogenase I chain B [Thiobacillus denitrificans ATCC
25259]
Length = 158
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 116/149 (77%), Positives = 127/149 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+GF+ T DQL+ + RTGS+ MTFGLACCAVEMMQA RYDL+RFG R SPRQSD
Sbjct: 8 EQGFVTTKADQLINYMRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDI
Sbjct: 68 VMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEALI+GI+ LQKKIRR +
Sbjct: 128 YVPGCPPTAEALIFGIIQLQKKIRRTNTI 156
>gi|148266253|ref|YP_001232959.1| NADH-quinone oxidoreductase, B subunit [Geobacter uraniireducens
Rf4]
gi|238065155|sp|A5G9B8|NUOB_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|146399753|gb|ABQ28386.1| NADH dehydrogenase subunit B [Geobacter uraniireducens Rf4]
Length = 170
Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats.
Identities = 80/152 (52%), Positives = 108/152 (71%), Gaps = 1/152 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ + S+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASP
Sbjct: 4 EQPLGDNIVTASLDGLVNWARKSSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD +I+AGT+T KM ++ VY+QMPEP++VI+MG+CA GG + +YSVV+G D +
Sbjct: 64 RQSDCIIIAGTVTKKMLPVIKTVYEQMPEPKWVIAMGACACSGGVF-DTYSVVQGVDEAL 122
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
PVD+Y+PGCPP EAL+YG++ LQ KI + N
Sbjct: 123 PVDVYIPGCPPRPEALLYGLMKLQDKIGKERN 154
>gi|312130053|ref|YP_003997393.1| NADH dehydrogenase subunit b [Leadbetterella byssophila DSM 17132]
gi|311906599|gb|ADQ17040.1| NADH dehydrogenase subunit B [Leadbetterella byssophila DSM 17132]
Length = 169
Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats.
Identities = 86/151 (56%), Positives = 112/151 (74%), Gaps = 1/151 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ ++T++D+L WAR SL M FGLACCA+EMM YDLERFG PR SP
Sbjct: 11 EKSGEGEVILTNLDELTNWARANSLWPMGFGLACCAIEMMATFASSYDLERFGIFPRNSP 70
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRI 149
RQSD+MI++GT+T KMA +RR+Y+QM EPRYVISMGSC+N GG Y + Y V++G D++
Sbjct: 71 RQSDLMIISGTVTFKMADRVRRLYEQMAEPRYVISMGSCSNCGGPYWEHGYHVLKGVDKV 130
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+PVD+YVPGCPP EALI G++ LQ+KI+R
Sbjct: 131 IPVDVYVPGCPPRPEALIGGLIKLQEKIKRQ 161
>gi|219130938|ref|XP_002185609.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402949|gb|EEC42907.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 166
Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats.
Identities = 113/142 (79%), Positives = 126/142 (88%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
+ ++ VD LV WAR GSL MTFGLACCAVEMM A+ RYD+ERFG RASPRQSDVM
Sbjct: 14 EYAISRVDDLVNWARKGSLWPMTFGLACCAVEMMHAAASRYDMERFGMVFRASPRQSDVM 73
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 74 IVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 133
Query: 157 PGCPPTAEALIYGILLLQKKIR 178
PGCPPTAEAL+YG++ LQKK++
Sbjct: 134 PGCPPTAEALLYGLIQLQKKVK 155
>gi|266656|sp|P29918|NQO6_PARDE RecName: Full=NADH-quinone oxidoreductase subunit 6; AltName:
Full=NADH dehydrogenase I subunit 6; AltName: Full=NDH-1
subunit 6
Length = 173
Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats.
Identities = 124/154 (80%), Positives = 138/154 (89%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D + ++ E+ KGFL+T+ + ++ WAR GSL WMTFGLACCAVEMMQ SMPRYDLERF
Sbjct: 12 DLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERF 71
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G APRASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSYSV
Sbjct: 72 GTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSV 131
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ++
Sbjct: 132 VRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRR 165
>gi|58267664|ref|XP_570988.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57227222|gb|AAW43681.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 250
Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats.
Identities = 108/179 (60%), Positives = 136/179 (75%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + + + ++ + ++ + + ++++++D++V W R GS+ MTFGL
Sbjct: 64 INSYDHSPSTTLPDTTIAQQKSNQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFGL 123
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM + RYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+
Sbjct: 124 ACCAVEMMHMAAARYDQDRLGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRW 183
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR
Sbjct: 184 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRRNR 242
>gi|134112065|ref|XP_775568.1| hypothetical protein CNBE2820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258227|gb|EAL20921.1| hypothetical protein CNBE2820 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 250
Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats.
Identities = 108/179 (60%), Positives = 136/179 (75%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + + + ++ + ++ + + ++++++D++V W R GS+ MTFGL
Sbjct: 64 INSYDHSPSTTLPDTTIAQQKSNQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFGL 123
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM + RYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+
Sbjct: 124 ACCAVEMMHMAAARYDQDRLGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRW 183
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR
Sbjct: 184 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRRNR 242
>gi|225874130|ref|YP_002755589.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC
51196]
gi|225792992|gb|ACO33082.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC
51196]
Length = 216
Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats.
Identities = 77/158 (48%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+ E++ G T++++L W R S+ +TFGLACCA+EM+ +M RYDL R
Sbjct: 7 APQQLKDLKVELSKNGVFTTTLEELYNWGRRSSVWPLTFGLACCAIEMIATTMARYDLAR 66
Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
FG R SPRQ+D++IV+GT+T KMA + R+Y+QMPEP+YVI+MG+CA GG + Y
Sbjct: 67 FGAEVFRPSPRQADLIIVSGTVTKKMAPQVVRLYNQMPEPKYVIAMGACAISGGPFRDGY 126
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+V++G DR +PVD+++PGCPP EALI+ + LQKKI
Sbjct: 127 NVLKGIDRYIPVDVHIPGCPPRPEALIHAFMTLQKKID 164
>gi|238023160|ref|ZP_04603586.1| hypothetical protein GCWU000324_03086 [Kingella oralis ATCC 51147]
gi|237865543|gb|EEP66683.1| hypothetical protein GCWU000324_03086 [Kingella oralis ATCC 51147]
Length = 159
Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats.
Identities = 108/149 (72%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ+D
Sbjct: 8 NKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQAD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPVD+
Sbjct: 68 LMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGLIQLQGKIKRTYTI 156
>gi|225024124|ref|ZP_03713316.1| hypothetical protein EIKCOROL_00992 [Eikenella corrodens ATCC
23834]
gi|294669093|ref|ZP_06734179.1| NADH dehydrogenase, B subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|224943149|gb|EEG24358.1| hypothetical protein EIKCOROL_00992 [Eikenella corrodens ATCC
23834]
gi|291309085|gb|EFE50328.1| NADH dehydrogenase, B subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 159
Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats.
Identities = 112/153 (73%), Positives = 128/153 (83%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
I +KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SP
Sbjct: 4 EGILNKGFITASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+V
Sbjct: 64 RQSDLMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEALIYG++ LQ KI+R +
Sbjct: 124 PVDVYVPGCPPTAEALIYGLIQLQGKIKRTYTI 156
>gi|251799771|ref|YP_003014502.1| NADH dehydrogenase subunit B [Paenibacillus sp. JDR-2]
gi|247547397|gb|ACT04416.1| NADH-quinone oxidoreductase, B subunit [Paenibacillus sp. JDR-2]
Length = 172
Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats.
Identities = 88/149 (59%), Positives = 109/149 (73%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+ + +++QL WAR+ SL +TFGLACCA+EMM YDL+RFG R SPRQSD
Sbjct: 17 ERNVFMGTLEQLKAWARSNSLWPLTFGLACCAIEMMGTGASHYDLDRFGVMFRTSPRQSD 76
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGT+T KM LRR+YDQMPEP++VI+MGSCA GG Y SY+V++G D+IVPVD+
Sbjct: 77 VMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYIKSYAVMKGVDQIVPVDV 136
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
Y+PGCPP ALIYGI LQ+KIR
Sbjct: 137 YIPGCPPNPAALIYGINKLQEKIRYEAKT 165
>gi|172072907|ref|YP_001806668.1| NADH dehydrogenase subunit K [Cryptomeria japonica]
gi|171854926|dbj|BAG16666.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica]
gi|239794295|dbj|BAH73292.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica]
gi|239794377|dbj|BAH73373.1| NADH-plastoquinone oxidoreductase subunit K [Cryptomeria japonica]
Length = 268
Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats.
Identities = 72/162 (44%), Positives = 108/162 (66%), Gaps = 1/162 (0%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
++ S + + T + T+++ L WAR SL + +G +CC +E R+D
Sbjct: 29 PAINPIESSLLDQTTSNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDF 88
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HY 138
+R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG +
Sbjct: 89 DRYGLVPRSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTD 148
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
SYS VRG D+++PVDIY+PGCPP EA+I I+ L++KI +
Sbjct: 149 SYSTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLREKIAQE 190
>gi|110636931|ref|YP_677138.1| NADH:ubiquinone oxidoreductase [Cytophaga hutchinsonii ATCC 33406]
gi|110279612|gb|ABG57798.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406]
Length = 184
Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats.
Identities = 97/161 (60%), Positives = 117/161 (72%), Gaps = 1/161 (0%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
S + + G +V+ ++ ++ WAR SL M+FGLACCA+EMMQ YDL+RFG
Sbjct: 5 TFMSLLDHKFGQGGIVVSQLEDVLNWARLSSLFPMSFGLACCAIEMMQTFTSGYDLDRFG 64
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSV 142
PR SPRQSDVMIVAGT+T KMA +RR+Y+QMPEPRYVISMGSC+N GG Y + Y V
Sbjct: 65 VIPRPSPRQSDVMIVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHGYHV 124
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
V+G DRIVPVDIYVPGCPP EALI G L LQ+KIR+ V
Sbjct: 125 VKGVDRIVPVDIYVPGCPPRPEALIGGFLKLQEKIRKETLV 165
>gi|301107944|ref|XP_002903054.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
T30-4]
gi|262098172|gb|EEY56224.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
T30-4]
Length = 205
Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats.
Identities = 105/179 (58%), Positives = 132/179 (73%), Gaps = 3/179 (1%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
+ +++++ ++ ++V+ VD LV W R SL +TFGLAC
Sbjct: 24 PATSSSSAPAERGNIQEL---LGGNATARNGVEYVVSRVDDLVNWGRKSSLWPITFGLAC 80
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM ++ RYD ER G RASPRQ+DVMIVAGTLTNKMA ALRRVYDQMPEPRYV+
Sbjct: 81 CAVEMMHSAGSRYDFERMGMVFRASPRQTDVMIVAGTLTNKMAPALRRVYDQMPEPRYVV 140
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SMGSCANGGGYYHYSY+VVRG DR++PVDIYVPGCPPTAEAL++G++ LQKK++ ++
Sbjct: 141 SMGSCANGGGYYHYSYAVVRGADRVIPVDIYVPGCPPTAEALLFGLMQLQKKVKGNKSL 199
>gi|303324039|ref|XP_003072007.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240111717|gb|EER29862.1| NADH-ubiquinone oxidoreductase, putative [Coccidioides posadasii
C735 delta SOWgp]
Length = 213
Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats.
Identities = 102/146 (69%), Positives = 123/146 (84%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
+T+ D LV WAR GSL ++FGLACC +EMM ASMPRYD +R G RASPRQ+DVM+V
Sbjct: 63 FLTTTDNLVNWARQGSLWPLSFGLACCGLEMMSASMPRYDQDRLGIIFRASPRQADVMLV 122
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
AGT+TNKMA ALR +YDQMP+P++VISMGSCANGGGYYHYSYSV+RG DRI+PVDIYVPG
Sbjct: 123 AGTVTNKMAPALRLLYDQMPDPKWVISMGSCANGGGYYHYSYSVLRGVDRIIPVDIYVPG 182
Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184
CPPT EAL+YG+ LLQK++R+ +
Sbjct: 183 CPPTPEALLYGVFLLQKRMRKTRITR 208
>gi|332968234|gb|EGK07311.1| NADH-quinone oxidoreductase subunit B [Kingella kingae ATCC 23330]
Length = 159
Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats.
Identities = 109/149 (73%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQSD
Sbjct: 8 NKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPVD+
Sbjct: 68 LMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGLIQLQGKIKRTYTI 156
>gi|301107922|ref|XP_002903043.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
T30-4]
gi|262098161|gb|EEY56213.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
T30-4]
Length = 205
Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats.
Identities = 106/179 (59%), Positives = 133/179 (74%), Gaps = 3/179 (1%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V + +++++ ++ ++V+ VD LV W R SL +TFGLAC
Sbjct: 24 PVTSLSSAPAERGNIQEL---LGGNATARNGVEYVVSRVDDLVNWGRKSSLWPITFGLAC 80
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM ++ RYD ER G RASPRQ+DVMIVAGTLTNKMA ALRRVYDQMPEPRYV+
Sbjct: 81 CAVEMMHSAGSRYDFERMGMVFRASPRQTDVMIVAGTLTNKMAPALRRVYDQMPEPRYVV 140
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SMGSCANGGGYYHYSY+VVRG DR++PVDIYVPGCPPTAEAL++G++ LQKK++ ++
Sbjct: 141 SMGSCANGGGYYHYSYAVVRGADRVIPVDIYVPGCPPTAEALLFGLMQLQKKVKGNKSL 199
>gi|198276152|ref|ZP_03208683.1| hypothetical protein BACPLE_02341 [Bacteroides plebeius DSM 17135]
gi|198270964|gb|EDY95234.1| hypothetical protein BACPLE_02341 [Bacteroides plebeius DSM 17135]
Length = 193
Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats.
Identities = 75/166 (45%), Positives = 110/166 (66%), Gaps = 3/166 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + + + G ++ +VD+L+ W R+ SL +TFG +CCA+E M RYD
Sbjct: 18 KNNDYLEDMVRRLNMDGAGIVLGTVDELINWGRSNSLWSLTFGTSCCAIEFMALGAARYD 77
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
+ RFGF R SPRQ+D+++V GT+T+KMA L+R+YDQM EP+YV+++G C GG +
Sbjct: 78 MARFGFEVTRNSPRQADMIMVLGTITHKMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFI 137
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+KI+ +
Sbjct: 138 KSYHVVNGIDKIIPVDVYIPGCPPRPEAFFYGMMQLQRKIKVERFL 183
>gi|332971775|gb|EGK10723.1| NADH-quinone oxidoreductase subunit B [Desmospora sp. 8437]
Length = 175
Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats.
Identities = 92/146 (63%), Positives = 110/146 (75%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+ T+++ + WAR+ SL MTFGLACCA+EMM P YDL+RFG RASPRQSD
Sbjct: 17 QRNVFTTTLENVKAWARSNSLWPMTFGLACCAIEMMGTGAPHYDLDRFGSFFRASPRQSD 76
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIVAGT+T KM LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G D+IVPVD+
Sbjct: 77 VMIVAGTVTKKMGPLLRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVPVDV 136
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRV 180
Y+PGCPP ALIYGI LQ+KIR
Sbjct: 137 YIPGCPPNPAALIYGIHKLQEKIRYE 162
>gi|167630265|ref|YP_001680764.1| proton-translocating NADH-ubiquinone oxidoreductase, chain b
[Heliobacterium modesticaldum Ice1]
gi|238065157|sp|B0TH78|NUOB_HELMI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|167593005|gb|ABZ84753.1| proton-translocating NADH-ubiquinone oxidoreductase, chain b
[Heliobacterium modesticaldum Ice1]
Length = 175
Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats.
Identities = 82/165 (49%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ VD E+ K ++TS++ + WAR SL ++ GLACCA+EMM R+D+
Sbjct: 5 KNVDTLSEGQVDELIKKNIIMTSLEAVFNWARGNSLWPLSSGLACCAIEMMATGASRFDM 64
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG+ R SPRQ+D++I+AGTLT KMA A++RVY+QMPEP+++I+MGSCA GG +
Sbjct: 65 ARFGYEVFRPSPRQADLIIIAGTLTWKMAPAIQRVYEQMPEPKWIIAMGSCACTGGPFAD 124
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SY+VV G D+++PVD+YVPGCPP EAL+ G L L+ KI+ V
Sbjct: 125 SYAVVPGVDKVIPVDVYVPGCPPRPEALLDGFLKLKAKIQNPAKV 169
>gi|293603920|ref|ZP_06686335.1| NADH-quinone oxidoreductase subunit B [Achromobacter piechaudii
ATCC 43553]
gi|311104659|ref|YP_003977512.1| NADH-quinone oxidoreductase subunit B [Achromobacter xylosoxidans
A8]
gi|218528077|sp|A9II02|NUOB_BORPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|292817757|gb|EFF76823.1| NADH-quinone oxidoreductase subunit B [Achromobacter piechaudii
ATCC 43553]
gi|310759348|gb|ADP14797.1| NADH-quinone oxidoreductase, B subunit [Achromobacter xylosoxidans
A8]
gi|317401989|gb|EFV82589.1| NADH-ubiquinone oxidoreductase [Achromobacter xylosoxidans C54]
Length = 158
Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats.
Identities = 110/153 (71%), Positives = 127/153 (83%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
I +GF+ TS D+ + WA+TGS+ MTFGLACCAVEMM A RYDL++FG R SP
Sbjct: 4 DGILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTL NKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEAL+YG+L +Q KIR +
Sbjct: 124 PVDVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156
>gi|226372608|gb|ACO51929.1| NADH dehydrogenase iron-sulfur protein 7, mitochondrial precursor
[Rana catesbeiana]
Length = 217
Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats.
Identities = 117/171 (68%), Positives = 134/171 (78%), Gaps = 6/171 (3%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
+++ ++ +S V A S + S F+VT +D LV+WAR SL MTFGLA
Sbjct: 38 NSISASLVRQKSGA----VPATKSSVPS--GKGEFIVTKLDDLVSWARRSSLWPMTFGLA 91
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV
Sbjct: 92 CCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYV 151
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
+SMGSCANGGGYYHYSYSVVRGCD IVPVDIYVPGCPPTAEAL+YGIL LQ
Sbjct: 152 VSMGSCANGGGYYHYSYSVVRGCDGIVPVDIYVPGCPPTAEALLYGILQLQ 202
>gi|313156901|gb|EFR56339.1| NADH-quinone oxidoreductase, B subunit [Alistipes sp. HGB5]
Length = 218
Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats.
Identities = 75/162 (46%), Positives = 110/162 (67%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ +E+ +V +D+L+ W R+ SL +TF +CC +E M RYD
Sbjct: 20 NEYLEKMVAELRDNNTNVIVGCLDELIEWGRSNSLWPLTFATSCCGIEFMAVGAARYDFA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D ++VAGT+T+KMA LRR+YDQM +P+YVI++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADFIMVAGTITHKMAPVLRRLYDQMADPKYVIAVGGCAISGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y V+ G DRI+PVD+Y+PGCPP EA++YG++ LQ+K++
Sbjct: 140 YHVLNGVDRILPVDVYIPGCPPRPEAMLYGLMQLQRKVKLQR 181
>gi|312211788|emb|CBX91872.1| hypothetical protein [Leptosphaeria maculans]
Length = 233
Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats.
Identities = 115/172 (66%), Positives = 130/172 (75%), Gaps = 3/172 (1%)
Query: 16 SCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
+ K + S+ KG + +T++DQ+ WAR SL MTFGLACCAVEMM
Sbjct: 57 APPPMKQARREVPLPSQEGKKGAMQYALTTLDQVANWARQSSLWPMTFGLACCAVEMMHL 116
Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANG
Sbjct: 117 STPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANG 176
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GGYYHYSYSV RGCDRIVPVDIYVPGCPPTAEAL+YGI LQKK+R +
Sbjct: 177 GGYYHYSYSVTRGCDRIVPVDIYVPGCPPTAEALMYGIFQLQKKMRHTKITR 228
>gi|315051282|ref|XP_003175015.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
118893]
gi|311340330|gb|EFQ99532.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
118893]
Length = 191
Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats.
Identities = 106/165 (64%), Positives = 127/165 (76%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
++++ E T +VT +DQ+ WAR GSL + FGLACC VEMM SMPRYDL
Sbjct: 22 KRLEVPLPSQGEEPTPLRHMVTKLDQITNWARQGSLWPLMFGLACCGVEMMALSMPRYDL 81
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
+R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P++VISMGSCANGGGYYHYS
Sbjct: 82 DRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVISMGSCANGGGYYHYS 141
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSVVRG DR+VPVD+YVPGCPPTAEA +YGIL LQKKI R +
Sbjct: 142 YSVVRGVDRLVPVDVYVPGCPPTAEAFMYGILQLQKKISRQRTTR 186
>gi|71023639|ref|XP_762049.1| hypothetical protein UM05902.1 [Ustilago maydis 521]
gi|46101614|gb|EAK86847.1| hypothetical protein UM05902.1 [Ustilago maydis 521]
Length = 228
Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats.
Identities = 108/171 (63%), Positives = 127/171 (74%)
Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
S+ ++ + + ++++S+D++ WAR S MTFGLACCAVEMM
Sbjct: 52 PLPLMSVANRGSNQLSLETPKNGVEYVLSSMDKMANWARQSSFWPMTFGLACCAVEMMHV 111
Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
+ RYD +R G RASPRQSD MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANG
Sbjct: 112 ATARYDQDRLGVVFRASPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANG 171
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YG L L +KIRR
Sbjct: 172 GGYYHYSYSVVRGCDRIVPVDLYVPGCPPTAEALLYGFLQLHRKIRRNRKT 222
>gi|302904283|ref|XP_003049034.1| hypothetical protein NECHADRAFT_82494 [Nectria haematococca mpVI
77-13-4]
gi|256729969|gb|EEU43321.1| hypothetical protein NECHADRAFT_82494 [Nectria haematococca mpVI
77-13-4]
Length = 206
Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats.
Identities = 113/186 (60%), Positives = 132/186 (70%), Gaps = 4/186 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHK----GFLVTSVDQLVTWARTGSLMWM 58
+ ++ S S +K + SE + V S+D + WAR GSL M
Sbjct: 16 VAPAASSMLPRTVSTSSKKPPRVEMALQSENQKPSSIAEYAVASLDIIANWARQGSLWPM 75
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMM + PRYD +RFGF RASPR +D+MIVAGT+TNKMA ALR+VYDQM
Sbjct: 76 TFGLACCAVEMMHIAGPRYDQDRFGFMFRASPRHADIMIVAGTVTNKMAPALRQVYDQMA 135
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVPGCPPT EALIYG+ LQ+KIR
Sbjct: 136 DPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVPGCPPTCEALIYGMFQLQRKIR 195
Query: 179 RVGNVK 184
R +
Sbjct: 196 RTKTSR 201
>gi|170092259|ref|XP_001877351.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647210|gb|EDR11454.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 191
Score = 224 bits (572), Expect = 4e-57, Method: Composition-based stats.
Identities = 110/178 (61%), Positives = 133/178 (74%), Gaps = 6/178 (3%)
Query: 11 ISGQSSCSLEKV------DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
++ + E V + + ++++++D++ WAR GS+ MTFGLAC
Sbjct: 7 VAPPPTSPTEPVTLLAQRGSLQLSLEQPQNGAEYVLSTLDKVTNWARQGSMWPMTFGLAC 66
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VI
Sbjct: 67 CAVEMMHMAAARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVI 126
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR
Sbjct: 127 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLQRKMRRSRK 184
>gi|240272844|gb|EER36371.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H143]
gi|325088617|gb|EGC41927.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
Length = 228
Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats.
Identities = 112/160 (70%), Positives = 125/160 (78%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
E + +T++DQ+ WAR GSL MTFGLACCAVEMM S PRYD +R G
Sbjct: 64 PLPSQEKEGGAMQYALTTLDQVTNWARQGSLWPMTFGLACCAVEMMHLSTPRYDQDRLGI 123
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV R
Sbjct: 124 IFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTR 183
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDRIVPVDIYVPGCPPT+EAL+YGI LQKK+R +
Sbjct: 184 GCDRIVPVDIYVPGCPPTSEALMYGIFQLQKKMRHTRITR 223
>gi|319779199|ref|YP_004130112.1| NADH-ubiquinone oxidoreductase chain B [Taylorella equigenitalis
MCE9]
gi|317109223|gb|ADU91969.1| NADH-ubiquinone oxidoreductase chain B [Taylorella equigenitalis
MCE9]
Length = 159
Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats.
Identities = 114/155 (73%), Positives = 130/155 (83%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+S +KGFLVTS D ++ W RTGS+ +TFGLACCAVEMM A RYDL++FG R
Sbjct: 1 MSDTSNNKGFLVTSTDSVLHWLRTGSMWPVTFGLACCAVEMMHAGAARYDLDQFGIIFRP 60
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPRQSD+MIVAGTLTNKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSY+VVRGCDR
Sbjct: 61 SPRQSDIMIVAGTLTNKMAPALRKVYDQMAEPRWVVSMGSCANGGGYYHYSYAVVRGCDR 120
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
IVPVDIYVPGCPPTAEALIYG+L LQ K+RR +
Sbjct: 121 IVPVDIYVPGCPPTAEALIYGMLQLQNKMRRTLTI 155
>gi|83775539|dbj|BAE65659.1| unnamed protein product [Aspergillus oryzae]
Length = 172
Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats.
Identities = 109/169 (64%), Positives = 130/169 (76%), Gaps = 4/169 (2%)
Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
+ + A F+ ++SEI F T++DQLV WAR SL ++FGLACCAVEMMQ SMP
Sbjct: 3 TAHIPSCKASFTELASEI----FSRTTIDQLVNWARQSSLWPLSFGLACCAVEMMQVSMP 58
Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
RYD +R G RASPRQSDVM+VAGT+TNKM ALR+ YDQMP+P++VISMGSCANGGGY
Sbjct: 59 RYDQDRLGIIFRASPRQSDVMVVAGTVTNKMGPALRQCYDQMPDPKWVISMGSCANGGGY 118
Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YHYSYSVVRG DRIVPVD+Y+PGCPPT EA + GI LQKK+R +
Sbjct: 119 YHYSYSVVRGVDRIVPVDVYIPGCPPTPEAFLCGIFQLQKKMRHTKVTR 167
>gi|167627154|ref|YP_001677654.1| NADH dehydrogenase subunit B [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|238065146|sp|B0TWP5|NUOB_FRAP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|167597155|gb|ABZ87153.1| NADH dehydrogenase (quinone) [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 158
Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats.
Identities = 110/150 (73%), Positives = 124/150 (82%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+KGF+ S D L+ W RTGSL +T GLACCAVEMM A RYDL+RFG R SPRQS
Sbjct: 6 ENKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQS 65
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DV+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRI+PVD
Sbjct: 66 DVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVD 125
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
IYVPGCPPTAEAL+YGI+ LQ KI R +
Sbjct: 126 IYVPGCPPTAEALVYGIIQLQNKIIRKDTI 155
>gi|169604652|ref|XP_001795747.1| hypothetical protein SNOG_05340 [Phaeosphaeria nodorum SN15]
gi|160706616|gb|EAT87731.2| hypothetical protein SNOG_05340 [Phaeosphaeria nodorum SN15]
Length = 229
Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats.
Identities = 117/183 (63%), Positives = 133/183 (72%), Gaps = 3/183 (1%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFG 61
T + + KV + S+ KG + +T++DQ+ WAR SL MTFG
Sbjct: 42 TTPATVPGNPGTPPPMKVARREVPLPSQEGKKGAIQYALTTLDQMANWARQSSLWPMTFG 101
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
LACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR
Sbjct: 102 LACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPR 161
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPTAEAL+YGI LQKK+R
Sbjct: 162 WVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTAEALMYGIFQLQKKMRHTK 221
Query: 182 NVK 184
+
Sbjct: 222 ITR 224
>gi|34501411|ref|NP_904198.1| NADH dehydrogenase subunit K [Physcomitrella patens subsp. patens]
gi|75294073|sp|Q6YXQ9|NDHK_PHYPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|34494781|dbj|BAC85048.1| NADH dehydrogenase 27 kD subunit [Physcomitrella patens subsp.
patens]
Length = 261
Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats.
Identities = 73/181 (40%), Positives = 113/181 (62%), Gaps = 1/181 (0%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M L + + ++ +++ S++ ++T+ + WAR SL + +
Sbjct: 1 MVLNSNYDNYKNKITNSMKPLINSVNPAFSNQENPNSVILTTFNDFTNWARLSSLWPLLY 60
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G +CC +E R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP
Sbjct: 61 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEP 120
Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+YVI+MG+C GG + SYS VRG D+++PVDIY+PGCPP EA+I I+ L+KKI +
Sbjct: 121 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKIAQ 180
Query: 180 V 180
Sbjct: 181 E 181
>gi|119511864|ref|ZP_01630964.1| NADH dehydrogenase beta subunit [Nodularia spumigena CCY9414]
gi|119463506|gb|EAW44443.1| NADH dehydrogenase beta subunit [Nodularia spumigena CCY9414]
Length = 246
Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 113/175 (64%), Gaps = 4/175 (2%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+N K+ S + ++ I+ +++ ++T+VD L WAR SL + FG ACC
Sbjct: 3 LNSKLTSPDKEQIINPIERP--AITQDLSE-NVILTTVDDLYNWARLSSLWPLLFGTACC 59
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
+E R+D +RFG PR+SPRQ+D++I AGT+T KMA L R+Y+QMPEP+YVI+
Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119
Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI
Sbjct: 120 MGACTITGGMFSMDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKIAN 174
>gi|222053571|ref|YP_002535933.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. FRC-32]
gi|238065153|sp|B9LZL8|NUOB_GEOSF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|221562860|gb|ACM18832.1| NADH-quinone oxidoreductase, B subunit [Geobacter sp. FRC-32]
Length = 170
Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats.
Identities = 81/152 (53%), Positives = 108/152 (71%), Gaps = 1/152 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ + S+D LV WAR S+ MTFGLACCA+EMM ++DL+RFG RASP
Sbjct: 4 EQPLGDNIVTASLDGLVNWARKTSIWPMTFGLACCAIEMMATGAAKHDLDRFGIIFRASP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D +I+AGT+T KM ++ VY+QMPEP++VI+MG+CA GG + +YSVV+G D +
Sbjct: 64 RQADCIIIAGTVTKKMLPVIKTVYEQMPEPKWVIAMGACACSGGVF-DTYSVVQGIDEAL 122
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
PVD+YVPGCPP EAL+YGI+ LQ KI + N
Sbjct: 123 PVDVYVPGCPPRPEALLYGIMKLQDKIGKERN 154
>gi|294674399|ref|YP_003575015.1| proton-translocating NADH-quinone oxidoreductase subunit B
[Prevotella ruminicola 23]
gi|294473976|gb|ADE83365.1| putative proton-translocating NADH-quinone oxidoreductase, B
subunit [Prevotella ruminicola 23]
Length = 263
Score = 224 bits (570), Expect = 5e-57, Method: Composition-based stats.
Identities = 75/162 (46%), Positives = 110/162 (67%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ +I E+ G + S+DQL+ W R+ SL +TF +CC +E M RYD
Sbjct: 19 NESLEKIIDELHEGGVNVVTGSLDQLINWGRSNSLWSLTFATSCCGIEFMACGCSRYDFA 78
Query: 81 RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF R SPRQ+D+++ AGT+T+KMA AL+R+YDQM EP+YV+++G CA GG + S
Sbjct: 79 RFGFEVTRNSPRQADLIMCAGTITHKMAPALKRLYDQMAEPKYVVAVGGCAISGGPFKSS 138
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV+G + IVPVD+++PGCPP EA++YG++ LQ+K++
Sbjct: 139 YHVVKGIEEIVPVDVFIPGCPPRPEAIMYGMMQLQRKVKVEK 180
>gi|302912562|ref|XP_003050728.1| hypothetical protein NECHADRAFT_60986 [Nectria haematococca mpVI
77-13-4]
gi|256731666|gb|EEU45015.1| hypothetical protein NECHADRAFT_60986 [Nectria haematococca mpVI
77-13-4]
Length = 223
Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 110/160 (68%), Positives = 127/160 (79%), Gaps = 3/160 (1%)
Query: 28 RISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ SE K + +T++D + WAR SL MTFGLACCAVEMM S PRYD +R G
Sbjct: 59 PLPSEEGTKSVIQYALTTLDVIANWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGI 118
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+V+SMGSCANGGGYYHYSYSVVR
Sbjct: 119 IFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVVSMGSCANGGGYYHYSYSVVR 178
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDRIVPVD+YVPGCPPT+EAL+YGI LQ+K+R +
Sbjct: 179 GCDRIVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 218
>gi|218527891|sp|A2CI36|NDHK_CHLAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 274
Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 71/172 (41%), Positives = 117/172 (68%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
+ S +++ +++ ++++ ++T+++ L WAR SL + +G +CC +E
Sbjct: 41 KRETSGKELSEATPQVTQSLSNQ-LILTTLNDLYNWARLSSLWPLLYGTSCCFIEFASLL 99
Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
R+D +RFG PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C G
Sbjct: 100 GSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 159
Query: 134 GYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
G + SYS VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ + V+
Sbjct: 160 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQEDFVE 211
>gi|124112067|ref|YP_001019118.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chlorokybus
atmophyticus]
gi|124012183|gb|ABM87958.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chlorokybus
atmophyticus]
Length = 281
Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 71/172 (41%), Positives = 117/172 (68%), Gaps = 2/172 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
+ S +++ +++ ++++ ++T+++ L WAR SL + +G +CC +E
Sbjct: 48 KRETSGKELSEATPQVTQSLSNQ-LILTTLNDLYNWARLSSLWPLLYGTSCCFIEFASLL 106
Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
R+D +RFG PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C G
Sbjct: 107 GSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 166
Query: 134 GYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
G + SYS VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ + V+
Sbjct: 167 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQEDFVE 218
>gi|256088165|ref|XP_002580226.1| NADH-plastoquinone oxidoreductase [Schistosoma mansoni]
gi|238665746|emb|CAZ36465.1| NADH-plastoquinone oxidoreductase, putative [Schistosoma mansoni]
Length = 207
Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 100/161 (62%), Positives = 125/161 (77%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+S +++T +D L WAR S+ +TFGLACCAVEMM + PRYD++R+G
Sbjct: 42 KPYSPFPKPQGKIDYVITRLDDLADWARKNSIYPLTFGLACCAVEMMHIAGPRYDMDRYG 101
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
RASPRQ+D++IV+GT+TNKMA AL R+Y QM +P++VISMGSCANGGGYYHYSYSVV
Sbjct: 102 VVFRASPRQADLLIVSGTVTNKMAPALHRIYSQMTQPKWVISMGSCANGGGYYHYSYSVV 161
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
RGCDRI+PVDIYVPGCPP+AEAL+Y IL LQKKI+ + K
Sbjct: 162 RGCDRIIPVDIYVPGCPPSAEALMYSILQLQKKIKSEKHFK 202
>gi|187477542|ref|YP_785566.1| NADH dehydrogenase subunit B [Bordetella avium 197N]
gi|123513819|sp|Q2KV17|NUOB_BORA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|115422128|emb|CAJ48652.1| NADH dehydrogenase I chain B [Bordetella avium 197N]
Length = 158
Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 109/153 (71%), Positives = 126/153 (82%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
I +GF+ TS D+ + WA+TGS+ MTFGLACCAVEMM A RYDL++FG R SP
Sbjct: 4 DGILKQGFITTSADKFINWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTL NKM ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEAL+YG+L +Q KIR +
Sbjct: 124 PVDVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156
>gi|296811983|ref|XP_002846329.1| NADH:ubiquinone oxidoreductase kD subunit [Arthroderma otae CBS
113480]
gi|238841585|gb|EEQ31247.1| NADH:ubiquinone oxidoreductase kD subunit [Arthroderma otae CBS
113480]
Length = 197
Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 101/165 (61%), Positives = 126/165 (76%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
++++ E ++T DQ+ WAR GSL +TFGLACC VEMM SMPRYDL
Sbjct: 28 KRLEVPLPSQGEEPVPLRHVLTKFDQIANWARQGSLWPLTFGLACCGVEMMAVSMPRYDL 87
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
+R G RASPRQ+DV+IV+GT+TNKM A+R +YDQMP+P++VISMGSCANGGGYYHYS
Sbjct: 88 DRMGIFYRASPRQADVLIVSGTVTNKMGPAIRLLYDQMPDPKWVISMGSCANGGGYYHYS 147
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSVVRG DR++PVD+YVPGCPPTAEA +YG+L LQKKI+ +
Sbjct: 148 YSVVRGVDRLLPVDVYVPGCPPTAEAFLYGVLQLQKKIKNQRTTR 192
>gi|226315029|ref|YP_002774925.1| NADH dehydrogenase subunit B [Brevibacillus brevis NBRC 100599]
gi|259514656|sp|C0Z772|NUOB_BREBN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|226097979|dbj|BAH46421.1| NADH-quinone oxidoreductase chain B [Brevibacillus brevis NBRC
100599]
Length = 172
Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 92/153 (60%), Positives = 113/153 (73%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
E ++ + T+++ + W R+ SL +TFGLACCA+EMM RYDL+RFG RASP
Sbjct: 13 QEELNRNVMFTTLETVKGWVRSNSLWPLTFGLACCAIEMMGTGGARYDLDRFGVIFRASP 72
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMIVAGT+T KMA LRR+YDQMPEP++VI+MGSCA GG Y SYSVV+G D+IV
Sbjct: 73 RQSDVMIVAGTVTKKMAPLLRRLYDQMPEPKWVIAMGSCATAGGPYVRSYSVVKGVDQIV 132
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+Y+PGCPP ALIYGI LQ+KIR
Sbjct: 133 PVDVYIPGCPPNPAALIYGINKLQEKIRYEAKT 165
>gi|190571252|ref|YP_001975610.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018650|ref|ZP_03334458.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|218528013|sp|B3CM42|NUOB_WOLPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|190357524|emb|CAQ54961.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995601|gb|EEB56241.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 167
Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 111/157 (70%), Positives = 132/157 (84%), Gaps = 4/157 (2%)
Query: 31 SEITHKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+ +GFL+T +D ++ WAR+GSL MTFGLACCAVEMM + RYDL+R+G
Sbjct: 11 NRYKKEGFLITKFGDLIDYIMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIIF 70
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+DVMIVAGTLTNKMA+ALR+VYDQM +P+YV+SMGSCANGGGYYHYSYSVVRGC
Sbjct: 71 RASPRQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHYSYSVVRGC 130
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRIVPVD+YVPGCPPTAEAL+YG+L LQ KI+R N+
Sbjct: 131 DRIVPVDVYVPGCPPTAEALLYGMLCLQNKIKRTKNI 167
>gi|33592008|ref|NP_879652.1| NADH dehydrogenase subunit B [Bordetella pertussis Tohama I]
gi|33597910|ref|NP_885553.1| NADH dehydrogenase subunit B [Bordetella parapertussis 12822]
gi|33602815|ref|NP_890375.1| NADH dehydrogenase subunit B [Bordetella bronchiseptica RB50]
gi|81425363|sp|Q7VZQ4|NUOB_BORPE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81426432|sp|Q7W5A8|NUOB_BORPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81429887|sp|Q7WCU0|NUOB_BORBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|33571652|emb|CAE41145.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella
pertussis Tohama I]
gi|33574339|emb|CAE38675.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella
parapertussis]
gi|33577257|emb|CAE35814.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Bordetella
bronchiseptica RB50]
gi|332381424|gb|AEE66271.1| NADH dehydrogenase subunit B [Bordetella pertussis CS]
Length = 158
Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 109/153 (71%), Positives = 126/153 (82%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
I +GF+ TS D+ + WA+TGS+ MTFGLACCAVEMM A RYDL++FG R SP
Sbjct: 4 DGILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGTL NKM ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIV
Sbjct: 64 RQSDLMIVAGTLCNKMGPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+YVPGCPPTAEAL+YG+L +Q KIR +
Sbjct: 124 PVDVYVPGCPPTAEALVYGLLQMQNKIRLTNTI 156
>gi|73666917|ref|YP_302933.1| NADH dehydrogenase subunit B [Ehrlichia canis str. Jake]
gi|72394058|gb|AAZ68335.1| NADH dehydrogenase subunit B [Ehrlichia canis str. Jake]
Length = 185
Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 115/157 (73%), Positives = 128/157 (81%), Gaps = 4/157 (2%)
Query: 27 SRISSEITHKGFLVTSVDQLV----TWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
++ H+GF+VT L+ WAR+ SL MTFGLACCAVEMM + RYDL+R+
Sbjct: 14 NQFWQSYNHQGFMVTQFSDLIDYISNWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRY 73
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSV
Sbjct: 74 GIMFRASPRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSV 133
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI R
Sbjct: 134 VRGCDRIVPVDIYVPGCPPTAEALLYGILCLQQKINR 170
>gi|325267311|ref|ZP_08133973.1| NADH-quinone oxidoreductase subunit B [Kingella denitrificans ATCC
33394]
gi|324981248|gb|EGC16898.1| NADH-quinone oxidoreductase subunit B [Kingella denitrificans ATCC
33394]
Length = 159
Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 108/149 (72%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ+D
Sbjct: 8 NKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQAD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPVD+
Sbjct: 68 LMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGLIQLQGKIKRTCTI 156
>gi|89095634|ref|ZP_01168528.1| NADH dehydrogenase subunit B [Bacillus sp. NRRL B-14911]
gi|89089380|gb|EAR68487.1| NADH dehydrogenase subunit B [Bacillus sp. NRRL B-14911]
Length = 177
Score = 224 bits (570), Expect = 6e-57, Method: Composition-based stats.
Identities = 88/149 (59%), Positives = 110/149 (73%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+ + +++Q+ WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSD
Sbjct: 24 QRNVFMATLEQIKAWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSD 83
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SYSVV+G D+IVPVD+
Sbjct: 84 VMIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVKSYSVVKGVDQIVPVDV 143
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
Y+PGCPP ALIYGI L++KIR
Sbjct: 144 YIPGCPPNPAALIYGINKLKEKIRYEAKT 172
>gi|311033318|ref|ZP_07711408.1| NADH dehydrogenase subunit B [Bacillus sp. m3-13]
Length = 170
Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats.
Identities = 88/160 (55%), Positives = 112/160 (70%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
S E + +T++++L WAR+ S+ MTFGLACCA+EMM YDL+RFG
Sbjct: 6 ESISPEEMEELKQTVFLTTLEELKAWARSNSMWPMTFGLACCAIEMMGVGSSHYDLDRFG 65
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
R SPRQSD MIV+GT+T KMA L+R+YDQMPEP++VI+MGSCA GG Y SY+VV
Sbjct: 66 SFFRTSPRQSDCMIVSGTVTKKMAPVLKRLYDQMPEPKWVIAMGSCATAGGPYIKSYAVV 125
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+G D+IVPVD+Y+PGCPP ALIYGI L++KIR
Sbjct: 126 KGVDQIVPVDVYIPGCPPNPAALIYGINKLREKIRYEAKT 165
>gi|238065078|sp|Q11XR8|NUOB1_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
Length = 178
Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats.
Identities = 97/159 (61%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
S + + G +V+ ++ ++ WAR SL M+FGLACCA+EMMQ YDL+RFG
Sbjct: 1 MSLLDHKFGQGGIVVSQLEDVLNWARLSSLFPMSFGLACCAIEMMQTFTSGYDLDRFGVI 60
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVR 144
PR SPRQSDVMIVAGT+T KMA +RR+Y+QMPEPRYVISMGSC+N GG Y + Y VV+
Sbjct: 61 PRPSPRQSDVMIVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHGYHVVK 120
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
G DRIVPVDIYVPGCPP EALI G L LQ+KIR+ V
Sbjct: 121 GVDRIVPVDIYVPGCPPRPEALIGGFLKLQEKIRKETLV 159
>gi|323345257|ref|ZP_08085480.1| NADH-quinone oxidoreductase subunit B [Prevotella oralis ATCC
33269]
gi|323093371|gb|EFZ35949.1| NADH-quinone oxidoreductase subunit B [Prevotella oralis ATCC
33269]
Length = 242
Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats.
Identities = 77/164 (46%), Positives = 111/164 (67%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K ++ +I E+ G + S+DQ++ W R+ SL +TF +CC +E M RYD
Sbjct: 17 KDNSSLEQIVDELHEGGVNVVTGSLDQMINWGRSNSLWSLTFATSCCGIEFMAVGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA A +R+YD+M EP+YVI++G CA GG +
Sbjct: 77 FARFGFEVTRNSPRQADLIMCAGTITNKMAPAFKRLYDEMAEPKYVIAVGGCAISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY VVRG D IVPVD+++PGCPP EA++YG++ LQ+K++
Sbjct: 137 SSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKVKIEK 180
>gi|332706504|ref|ZP_08426565.1| NADH-quinone oxidoreductase, B subunit [Lyngbya majuscula 3L]
gi|332354388|gb|EGJ33867.1| NADH-quinone oxidoreductase, B subunit [Lyngbya majuscula 3L]
Length = 248
Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 117/180 (65%), Gaps = 4/180 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
LT + I Q++ L ++ ++++ +++ ++T+VD L WAR SL M +G
Sbjct: 5 LTKDSAAIEQQQTNKILNPIER--TQVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGT 61
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACC +E R+D +RFG PR+SPRQ+D++I AGT+T KM AL R+Y+QMPEP+Y
Sbjct: 62 ACCFIEFAAMIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMGPALVRLYEQMPEPKY 121
Query: 123 VISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA++ I+ L+KK+
Sbjct: 122 VIAMGACTITGGMFSVDSPTAVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKVANES 181
>gi|56707212|ref|YP_169108.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89257089|ref|YP_514451.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
holarctica LVS]
gi|110669682|ref|YP_666239.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
tularensis FSC198]
gi|115315446|ref|YP_764169.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
holarctica OSU18]
gi|118498240|ref|YP_899290.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
novicida U112]
gi|134301247|ref|YP_001121215.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
tularensis WY96-3418]
gi|156503303|ref|YP_001429368.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167009481|ref|ZP_02274412.1| NADH-quinone oxidoreductase, b subunit family protein [Francisella
tularensis subsp. holarctica FSC200]
gi|187930989|ref|YP_001890973.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
mediasiatica FSC147]
gi|194324424|ref|ZP_03058197.1| NADH-quinone oxidoreductase, b subunit family [Francisella
tularensis subsp. novicida FTE]
gi|208780267|ref|ZP_03247609.1| NADH-quinone oxidoreductase, b subunit family [Francisella novicida
FTG]
gi|224456273|ref|ZP_03664746.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
tularensis MA00-2987]
gi|241667716|ref|ZP_04755294.1| NADH dehydrogenase subunit B [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254368325|ref|ZP_04984343.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
holarctica 257]
gi|254368966|ref|ZP_04984979.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis
subsp. holarctica FSC022]
gi|254371428|ref|ZP_04987429.1| hypothetical protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254373581|ref|ZP_04989067.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida
GA99-3549]
gi|254375048|ref|ZP_04990528.1| hypothetical protein FTDG_01236 [Francisella novicida GA99-3548]
gi|254874050|ref|ZP_05246760.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis
subsp. tularensis MA00-2987]
gi|254876260|ref|ZP_05248970.1| NADH-quinone oxidoreductase subunit B [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|290952990|ref|ZP_06557611.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
holarctica URFT1]
gi|295313810|ref|ZP_06804383.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
holarctica URFT1]
gi|81598108|sp|Q5NIN4|NUOB_FRATT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|122324569|sp|Q0BK52|NUOB_FRATO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|122500210|sp|Q2A1F1|NUOB_FRATH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|123169705|sp|Q14K37|NUOB_FRAT1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065148|sp|A7NEK9|NUOB_FRATF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065149|sp|A0Q8H1|NUOB_FRATN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065150|sp|A4IVZ3|NUOB_FRATW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|254767793|sp|B2SEV0|NUOB_FRATM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|54114093|gb|AAV29680.1| NT02FT1737 [synthetic construct]
gi|56603704|emb|CAG44665.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89144920|emb|CAJ80268.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
holarctica LVS]
gi|110320015|emb|CAL08048.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
tularensis FSC198]
gi|115130345|gb|ABI83532.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
holarctica OSU18]
gi|118424146|gb|ABK90536.1| NADH dehydrogenase I, B subunit [Francisella novicida U112]
gi|134049024|gb|ABO46095.1| NADH dehydrogenase I subunit B [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134254133|gb|EBA53227.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
holarctica 257]
gi|151569667|gb|EDN35321.1| hypothetical protein FTBG_01489 [Francisella tularensis subsp.
tularensis FSC033]
gi|151571305|gb|EDN36959.1| NADH dehydrogenase I [Francisella novicida GA99-3549]
gi|151572766|gb|EDN38420.1| hypothetical protein FTDG_01236 [Francisella novicida GA99-3548]
gi|156253906|gb|ABU62412.1| NADH-quinone oxidoreductase, subunit B [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|157121887|gb|EDO66057.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis
subsp. holarctica FSC022]
gi|187711898|gb|ACD30195.1| NADH dehydrogenase I, B subunit [Francisella tularensis subsp.
mediasiatica FSC147]
gi|194321489|gb|EDX18974.1| NADH-quinone oxidoreductase, b subunit family [Francisella
tularensis subsp. novicida FTE]
gi|208743916|gb|EDZ90218.1| NADH-quinone oxidoreductase, b subunit family [Francisella novicida
FTG]
gi|254840049|gb|EET18485.1| NADH-quinone oxidoreductase chain B 1 [Francisella tularensis
subsp. tularensis MA00-2987]
gi|254842281|gb|EET20695.1| NADH-quinone oxidoreductase subunit B [Francisella philomiragia
subsp. philomiragia ATCC 25015]
gi|282158320|gb|ADA77711.1| NADH dehydrogenase subunit B [Francisella tularensis subsp.
tularensis NE061598]
gi|332184795|gb|AEE27049.1| NADH-ubiquinone oxidoreductase chain B [Francisella cf. novicida
3523]
gi|332678976|gb|AEE88105.1| NADH-ubiquinone oxidoreductase chain B [Francisella cf. novicida
Fx1]
Length = 158
Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats.
Identities = 111/150 (74%), Positives = 124/150 (82%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+KGF+ S D L+ W RTGSL +T GLACCAVEMM A RYDL+RFG R SPRQS
Sbjct: 6 ENKGFITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQS 65
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DV+IVAGTL NKMA ALR+VYDQMP+P++VISMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 66 DVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 125
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
IYVPGCPPTAEAL+YGI+ LQ KI R +
Sbjct: 126 IYVPGCPPTAEALVYGIIQLQNKIIRKDTI 155
>gi|313202843|ref|YP_004041500.1| NADH dehydrogenase subunit b [Paludibacter propionicigenes WB4]
gi|312442159|gb|ADQ78515.1| NADH dehydrogenase subunit B [Paludibacter propionicigenes WB4]
Length = 194
Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats.
Identities = 75/184 (40%), Positives = 116/184 (63%), Gaps = 3/184 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M L +N K I E ++ + E +++ +D+L+ W R+ S+ + +
Sbjct: 8 MELKNINIKGIPTAEFNDNEYLENYIKEL--EANGVNVVLSKIDELINWGRSNSVWPLIY 65
Query: 61 GLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
+CC +E M ++ +D+ RFG R SPRQ+D+MIVAGT+ +KMA ++RVYDQM E
Sbjct: 66 ATSCCGIEFMASAAAHHDISRFGMEVTRNSPRQADLMIVAGTMVHKMAPLIKRVYDQMAE 125
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P+YV++MG+CA GG + SY VV G D+I+PVD+Y+PGCPP E+L YG++ LQ+KI+
Sbjct: 126 PKYVVAMGACAISGGPFVNSYHVVPGVDQIIPVDVYIPGCPPRPESLFYGLMQLQRKIKL 185
Query: 180 VGNV 183
+
Sbjct: 186 EQFL 189
>gi|112434059|gb|ABI18374.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
Length = 172
Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats.
Identities = 115/160 (71%), Positives = 129/160 (80%), Gaps = 4/160 (2%)
Query: 27 SRISSEITHKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
++ H+GF+VT L+ WAR+ SL MTFGLACCAVEMM + RYDL+R+
Sbjct: 11 NQFWQSYNHRGFMVTKFSDLINYVSSWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRY 70
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSV
Sbjct: 71 GVMFRASPRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSV 130
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI R +
Sbjct: 131 VRGCDRIVPVDIYVPGCPPTAEALLYGILCLQQKINRTAS 170
>gi|218527900|sp|B1VKF5|NDHK_CRYJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 238
Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats.
Identities = 72/160 (45%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
++ S + + T + T+++ L WAR SL + +G +CC +E R+D +R
Sbjct: 1 MNPIESSLLDQTTSNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 61 YGLVPRSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVDIY+PGCPP EA+I I+ L++KI +
Sbjct: 121 STVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLREKIAQE 160
>gi|170592879|ref|XP_001901192.1| Probable NADH-ubiquinone oxidoreductase 20 kDa subunit,
mitochondrialprecursor [Brugia malayi]
gi|158591259|gb|EDP29872.1| Probable NADH-ubiquinone oxidoreductase 20 kDa subunit,
mitochondrialprecursor , putative [Brugia malayi]
Length = 216
Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats.
Identities = 105/152 (69%), Positives = 121/152 (79%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
+ VT +D L SL MTFGLACCAVEMM + PRYD++RFG RAS
Sbjct: 57 QDPLPKGEMAVTRLDDLNNMIHRCSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRAS 116
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSDVMIVAGT+TNKMA A+RRVYDQMPEP++VISMGSCANGGGYYHYSYSV++G DRI
Sbjct: 117 PRQSDVMIVAGTVTNKMAPAVRRVYDQMPEPKWVISMGSCANGGGYYHYSYSVLKGVDRI 176
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+PVDIYVPGCPP+AEAL+YG+L LQKKI+R
Sbjct: 177 IPVDIYVPGCPPSAEALLYGVLQLQKKIKRKR 208
>gi|66809217|ref|XP_638331.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium
discoideum AX4]
gi|74853922|sp|Q54NI6|NDUS7_DICDI RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
7, mitochondrial; Flags: Precursor
gi|60466783|gb|EAL64831.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Dictyostelium
discoideum AX4]
Length = 178
Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats.
Identities = 112/147 (76%), Positives = 126/147 (85%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
+++ +D LV WARTGSL MTFGLACCAVEMMQ RYD++RFG PRASPRQSD +
Sbjct: 26 EVVISKIDGLVNWARTGSLWPMTFGLACCAVEMMQGYAARYDMDRFGVIPRASPRQSDCI 85
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMP PRYV+SMGSCANGGGYYHYSYSVVRGCDRI+PVD+Y+
Sbjct: 86 IVAGTLTNKMAPALRKVYDQMPNPRYVVSMGSCANGGGYYHYSYSVVRGCDRIIPVDVYI 145
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183
PGCPPTAEA +YGIL LQKKI R N+
Sbjct: 146 PGCPPTAEAFVYGILQLQKKIGREQNL 172
>gi|321259133|ref|XP_003194287.1| hypothetical protein CGB_E3580W [Cryptococcus gattii WM276]
gi|317460758|gb|ADV22500.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 229
Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats.
Identities = 107/167 (64%), Positives = 132/167 (79%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+L + ++ + + ++++++D++V W R GS+ MTFGLACCAVEMM +
Sbjct: 55 PDTTLAQQGSNQLSLETPRNGAEYVLSTLDKIVNWGRQGSMWPMTFGLACCAVEMMHMAA 114
Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGG
Sbjct: 115 ARYDQDRLGVVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGG 174
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
YYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YG+L L +K+RR
Sbjct: 175 YYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGMLQLMRKMRRNR 221
>gi|159026401|emb|CAO88930.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 247
Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats.
Identities = 78/179 (43%), Positives = 119/179 (66%), Gaps = 4/179 (2%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
T+ ++II QS L ++ ++++ +++ ++T+VD L WAR SL M +G A
Sbjct: 6 TSEFKQIIEQQSEKILNPIER--TKVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGTA 62
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YV
Sbjct: 63 CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPALVRLYEEMPEPKYV 122
Query: 124 ISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
I+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KK+
Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKVANES 181
>gi|307006579|gb|ADN23574.1| NADH-ubiquinone oxidoreductase NUFS7/PSST/20 kDa subunit [Hyalomma
marginatum rufipes]
Length = 182
Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats.
Identities = 107/177 (60%), Positives = 128/177 (72%)
Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
K SS K + F + D ++ W R SL +TFGLACCAV
Sbjct: 1 SKSSEPVSSEPEVKQPWRPYSPAKPANMVEFALARADDILAWGRKTSLWPLTFGLACCAV 60
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
EMM + PRYD++R+G RASPRQ+DV+IVAGT+TNKMA ALR+VYDQM EP++VIS G
Sbjct: 61 EMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTVTNKMAPALRKVYDQMLEPKWVISTG 120
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SCANGGGYYHYSYSVVRGCDRI+PVDIYVPGCPPTAEAL+YGIL LQ+KI+R+ +
Sbjct: 121 SCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYGILQLQRKIKRLNLTQ 177
>gi|85085876|ref|XP_957592.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Neurospora crassa
OR74A]
gi|6647651|sp|O47950|NDUS7_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 19.3 kDa subunit,
mitochondrial; AltName: Full=Complex I-19.3kD;
Short=CI-19.3kD; Flags: Precursor
gi|2764632|emb|CAA04802.1| 19.3kD iron-sulfur subunit of mitochondrial complex I [Neurospora
crassa]
gi|28918685|gb|EAA28356.1| NADH:ubiquinone oxidoreductase 19.3kD subunit [Neurospora crassa
OR74A]
gi|40882330|emb|CAF06152.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit, mitochondrial
precursor [Neurospora crassa]
Length = 226
Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats.
Identities = 110/147 (74%), Positives = 124/147 (84%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+ +T++D +V WAR SL MTFGLACCAVEMM S PRYD +R G RASPRQSDVMI
Sbjct: 75 YALTTLDSIVNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMI 134
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 135 VAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 194
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GCPPT+EAL+YGI LQ+K+R +
Sbjct: 195 GCPPTSEALMYGIFQLQRKMRNTKITR 221
>gi|78224544|ref|YP_386291.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Geobacter
metallireducens GS-15]
gi|123570771|sp|Q39QA8|NUOB_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|78195799|gb|ABB33566.1| NADH dehydrogenase subunit B [Geobacter metallireducens GS-15]
Length = 170
Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats.
Identities = 79/152 (51%), Positives = 107/152 (70%), Gaps = 1/152 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ F+ S+D LV WAR S+ MTFGLACCA+EMM DL+RFG RASP
Sbjct: 4 DQPLGDSFITASLDGLVNWARKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D +I+AGT+T KM ++ VY+QMPEP++V++MG+CA GG + +YSVV+G D +
Sbjct: 64 RQADCIIIAGTVTKKMLPVIQTVYEQMPEPKWVVAMGACACSGGVF-DTYSVVQGIDEAL 122
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
PVD+Y+PGCPP EAL+YG++ LQ KI + N
Sbjct: 123 PVDVYIPGCPPRPEALLYGLIKLQDKIMKDKN 154
>gi|295697744|ref|YP_003590982.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912]
gi|295413346|gb|ADG07838.1| NADH-quinone oxidoreductase, B subunit [Bacillus tusciae DSM 2912]
Length = 183
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 91/158 (57%), Positives = 119/158 (75%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
S+++T G LV++++QL WAR+ SL +TFGLACCA+EMM YDL+RFG
Sbjct: 22 DEESADLTRAGVLVSTIEQLKAWARSNSLWPLTFGLACCAIEMMGTGASHYDLDRFGIIF 81
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQSDVMIVAGT+T KM LRR+YDQMP+P++V++MGSCA GG Y SY+V++G
Sbjct: 82 RASPRQSDVMIVAGTVTKKMGPLLRRLYDQMPDPKWVVAMGSCATAGGPYVRSYAVMKGV 141
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D++VPVD+Y+PGCPP+ ALIYG+ LQ+KIR K
Sbjct: 142 DQVVPVDVYIPGCPPSPPALIYGLNKLQEKIRMEARRK 179
>gi|91083385|ref|XP_967426.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase, partial
[Tribolium castaneum]
Length = 227
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 104/167 (62%), Positives = 133/167 (79%), Gaps = 4/167 (2%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
I +S+C + + F + +++ +D L+ W R S+ +TFGLACCA+EMM
Sbjct: 20 IRCESTCPERRPYSPFRPKNQT----EWVLARLDDLLNWGRKTSMWPLTFGLACCAIEMM 75
Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
+ PRYD++R+G RASPRQ++V+IVAGT+TNKMA++LR+VYDQMPEPR+VISMGSCA
Sbjct: 76 HIAAPRYDMDRYGVVFRASPRQTEVIIVAGTVTNKMAASLRKVYDQMPEPRWVISMGSCA 135
Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
NGGGYYHYSYSVVRGC+RI+PVDIYVPGCPPTAEAL+YGIL LQKK+
Sbjct: 136 NGGGYYHYSYSVVRGCNRIIPVDIYVPGCPPTAEALMYGILQLQKKV 182
>gi|58584500|ref|YP_198073.1| NADH dehydrogenase subunit B [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|75497991|sp|Q5GT43|NUOB_WOLTR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|58418816|gb|AAW70831.1| NADH:ubiquinone oxidoreductase chain B [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 168
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 113/157 (71%), Positives = 132/157 (84%), Gaps = 4/157 (2%)
Query: 31 SEITHKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+ +GFLVT +D ++ WAR+GSL MTFGLACCAVEMM + RYDL+R+G
Sbjct: 12 NRYKKEGFLVTKFGSLIDYVINWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMF 71
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+DVMIVAGTLTNKMA+ALR+VYDQM +P+YV+SMGSCANGGGYYHYSYSVVRGC
Sbjct: 72 RASPRQADVMIVAGTLTNKMAAALRKVYDQMADPKYVVSMGSCANGGGYYHYSYSVVRGC 131
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRIVPVDIYVPGCPPTAEAL+YG+L LQ KI+R N+
Sbjct: 132 DRIVPVDIYVPGCPPTAEALLYGMLCLQNKIKRTQNI 168
>gi|224026051|ref|ZP_03644417.1| hypothetical protein BACCOPRO_02804 [Bacteroides coprophilus DSM
18228]
gi|224019287|gb|EEF77285.1| hypothetical protein BACCOPRO_02804 [Bacteroides coprophilus DSM
18228]
Length = 200
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 77/166 (46%), Positives = 111/166 (66%), Gaps = 3/166 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + R+ E+ G ++ ++D+L+ W R+ SL +TFG +CCA+E M RYD
Sbjct: 17 KNNDYLQRMVDELNRDGAGIIIGTIDELIEWGRSNSLWSLTFGTSCCAIEFMALGAARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
+ RFGF R SPRQ+D+++V GT+T KMA L+R+YDQM EP+YVI++G C GG +
Sbjct: 77 MARFGFEVTRNSPRQADMIMVLGTITYKMAPVLKRLYDQMAEPKYVIAVGGCTISGGPFI 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+KI+ +
Sbjct: 137 KSYHVVNGIDKIIPVDVYIPGCPPRPEAFYYGMMQLQRKIKVEKFL 182
>gi|288801144|ref|ZP_06406600.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella sp. oral
taxon 299 str. F0039]
gi|288332078|gb|EFC70560.1| NADH dehydrogenase I, B/C/D subunit protein [Prevotella sp. oral
taxon 299 str. F0039]
Length = 210
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 81/184 (44%), Positives = 116/184 (63%), Gaps = 7/184 (3%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWM 58
M + + K I + K + +I+ E+ G + S+DQL+ W R+ SL +
Sbjct: 1 MEVKKPHIKSIPYEEF----KDNETLEQIAQELHEGGVNVVTGSLDQLINWGRSNSLWSL 56
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
TF +CC +E M RYD RFGF R SPRQ+D+++ AGT+TNKMA +R+YD+M
Sbjct: 57 TFATSCCGIEFMSVGCARYDFARFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEM 116
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP+Y+I++G CA GG + SY VVRG + IVPVD+YVPGCPP EA++YG++ LQ+KI
Sbjct: 117 AEPKYIIAIGGCAISGGPFKASYHVVRGINEIVPVDVYVPGCPPRPEAILYGMMQLQRKI 176
Query: 178 RRVG 181
+
Sbjct: 177 KIEK 180
>gi|194333676|ref|YP_002015536.1| NADH dehydrogenase subunit B [Prosthecochloris aestuarii DSM 271]
gi|238065190|sp|B4S752|NUOB_PROA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|194311494|gb|ACF45889.1| NADH-quinone oxidoreductase, B subunit [Prosthecochloris aestuarii
DSM 271]
Length = 190
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 91/154 (59%), Positives = 117/154 (75%), Gaps = 1/154 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ ++I++ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+
Sbjct: 4 LDAKISNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y + Y V++G D
Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWKHGYHVLKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
RI+PVD+YVPGCPP EALI G++ +Q+ IR
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIRMEQ 157
>gi|281424343|ref|ZP_06255256.1| NADH dehydrogenase I, B subunit [Prevotella oris F0302]
gi|281401612|gb|EFB32443.1| NADH dehydrogenase I, B subunit [Prevotella oris F0302]
Length = 240
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 79/184 (42%), Positives = 117/184 (63%), Gaps = 7/184 (3%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWM 58
M + + K IS K + +I+ E+ G +V S+DQ + W R+ SL +
Sbjct: 1 MEVRKPHIKSISYDEF----KDNDSLEKITQELNEGGVNVIVGSLDQAINWGRSNSLWSL 56
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
TFG +CC +E M RYD RFGF R SPRQ+D+++ AGT+TNKMA +R+YD++
Sbjct: 57 TFGTSCCGIEFMAVGCARYDFSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEI 116
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP+YV+++G C GG + SY+VVRG D +VPVD+Y+PGCPP EA++YG++ LQ+K+
Sbjct: 117 AEPKYVVAVGGCTISGGPFKKSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKV 176
Query: 178 RRVG 181
+
Sbjct: 177 KVEK 180
>gi|253570156|ref|ZP_04847565.1| NADH-quinone oxidoreductase [Bacteroides sp. 1_1_6]
gi|251840537|gb|EES68619.1| NADH-quinone oxidoreductase [Bacteroides sp. 1_1_6]
Length = 197
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 75/162 (46%), Positives = 108/162 (66%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D LV W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NESLEKLVKELNAGGANVFLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|300727166|ref|ZP_07060584.1| NADH dehydrogenase I, b subunit [Prevotella bryantii B14]
gi|299775552|gb|EFI72144.1| NADH dehydrogenase I, b subunit [Prevotella bryantii B14]
Length = 254
Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats.
Identities = 74/178 (41%), Positives = 114/178 (64%), Gaps = 10/178 (5%)
Query: 14 QSSCSLEKVD-------ADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLAC 64
+ S++ V +I++E+ G ++ S+D + W R+ S +TFG +C
Sbjct: 4 RKRASIKSVPYEDFKDNDSLEKIAAELNEGGANVVLGSLDAAINWGRSNSPWSLTFGTSC 63
Query: 65 CAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
C +E M RYD+ RFG+ R SPRQ+D+++ AGT+TNKMA +R+YD+M EP+YV
Sbjct: 64 CGIEFMAIGCARYDMSRFGWEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYV 123
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+++G C GG + SY+VVRG + +VPVD+Y+PGCPP EA+IYG++ LQ+KI+
Sbjct: 124 VAVGGCTISGGPFKKSYNVVRGINELVPVDVYIPGCPPRPEAIIYGMMQLQRKIKVEK 181
>gi|313145380|ref|ZP_07807573.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides
fragilis 3_1_12]
gi|313134147|gb|EFR51507.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides
fragilis 3_1_12]
Length = 203
Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats.
Identities = 75/162 (46%), Positives = 107/162 (66%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G V +D L+ W R+ SL +TF +CC +E M RYD+
Sbjct: 27 NESLEKMVKELNEGGANVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 86
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + S
Sbjct: 87 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFRKS 146
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 147 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 188
>gi|88658003|ref|YP_507585.1| NADH dehydrogenase subunit B [Ehrlichia chaffeensis str. Arkansas]
gi|123493072|sp|Q2GG48|NUOB_EHRCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|88599460|gb|ABD44929.1| NADH dehydrogenase I, B subunit [Ehrlichia chaffeensis str.
Arkansas]
Length = 179
Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats.
Identities = 114/160 (71%), Positives = 127/160 (79%), Gaps = 4/160 (2%)
Query: 27 SRISSEITHKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
++ H+GF+VT L+ WAR+ SL MTFGLACCAVEMM + RYDL+R+
Sbjct: 11 NQFWQSYNHQGFMVTQFSDLINYISNWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRY 70
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSV
Sbjct: 71 GVMFRASPRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSV 130
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VRGCDRIVPVDIYVPGCPPTAEAL+YGI LQ+KI R
Sbjct: 131 VRGCDRIVPVDIYVPGCPPTAEALLYGIFCLQQKINRGNT 170
>gi|57239036|ref|YP_180172.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str.
Welgevonden]
gi|58578978|ref|YP_197190.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str.
Welgevonden]
gi|58617036|ref|YP_196235.1| NADH dehydrogenase subunit B [Ehrlichia ruminantium str. Gardel]
gi|75432798|sp|Q5FHF7|NUOB_EHRRG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81557325|sp|Q5HBM2|NUOB_EHRRW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|57161115|emb|CAH58026.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium str.
Welgevonden]
gi|58416648|emb|CAI27761.1| NADH-ubiquinone oxidoreductase chain B [Ehrlichia ruminantium str.
Gardel]
gi|58417604|emb|CAI26808.1| NADH-ubiquinone oxidoreductase chain B [Ehrlichia ruminantium str.
Welgevonden]
gi|112434039|gb|ABI18364.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
gi|112434041|gb|ABI18365.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
gi|112434043|gb|ABI18366.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
gi|112434045|gb|ABI18367.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
gi|112434047|gb|ABI18368.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
gi|112434049|gb|ABI18369.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
gi|112434051|gb|ABI18370.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
gi|112434053|gb|ABI18371.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
gi|112434055|gb|ABI18372.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
gi|112434057|gb|ABI18373.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
Length = 172
Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats.
Identities = 114/160 (71%), Positives = 130/160 (81%), Gaps = 4/160 (2%)
Query: 27 SRISSEITHKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
++ H+GF+VT + L++ WAR+ SL MTFGLACCAVEMM + +YDL+R+
Sbjct: 11 NQFWQSYNHRGFMVTKLSDLMSYVSSWARSNSLWPMTFGLACCAVEMMHTAASKYDLDRY 70
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSV
Sbjct: 71 GIMFRASPRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSV 130
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI R
Sbjct: 131 VRGCDRIVPVDIYVPGCPPTAEALLYGILCLQQKINRTAT 170
>gi|112434037|gb|ABI18363.1| NADH-quinone oxidoreductase chain B [Ehrlichia ruminantium]
Length = 171
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 114/160 (71%), Positives = 130/160 (81%), Gaps = 4/160 (2%)
Query: 27 SRISSEITHKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
++ H+GF+VT + L++ WAR+ SL MTFGLACCAVEMM + +YDL+R+
Sbjct: 11 NQFWQSYNHRGFMVTKLSDLMSYVSSWARSNSLWPMTFGLACCAVEMMHTAASKYDLDRY 70
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSV
Sbjct: 71 GIMFRASPRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSV 130
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI R
Sbjct: 131 VRGCDRIVPVDIYVPGCPPTAEALLYGILCLQQKINRTAT 170
>gi|307611657|emb|CBX01348.1| NADH dehydrogenase I chain B [Legionella pneumophila 130b]
Length = 146
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 112/145 (77%), Positives = 126/145 (86%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+T+V++LV WAR+GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSDVMIVA
Sbjct: 1 MTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPRQSDVMIVA 60
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GTL NKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGC
Sbjct: 61 GTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 120
Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
PPTAEAL+YGI+ LQ KIRR ++
Sbjct: 121 PPTAEALLYGIIQLQNKIRRKPVLE 145
>gi|294788083|ref|ZP_06753327.1| NADH dehydrogenase (ubiquinone), B subunit [Simonsiella muelleri
ATCC 29453]
gi|294484376|gb|EFG32059.1| NADH dehydrogenase (ubiquinone), B subunit [Simonsiella muelleri
ATCC 29453]
Length = 159
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 108/149 (72%), Positives = 126/149 (84%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+KGF+ S D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQSD
Sbjct: 8 NKGFVTASADTVLNYVRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQSD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTLTNKMA ALRRVYDQM EPR+V+SMG+CANGGGYYHYSYSVVRG DR+VPVD+
Sbjct: 68 LMIVAGTLTNKMAPALRRVYDQMAEPRWVLSMGTCANGGGYYHYSYSVVRGADRVVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPPTAEAL+YG++ LQ KI+R +
Sbjct: 128 YVPGCPPTAEALLYGLIQLQGKIKRTCTI 156
>gi|327398400|ref|YP_004339269.1| NAD(P)H-quinone oxidoreductase subunit K [Hippea maritima DSM
10411]
gi|327181029|gb|AEA33210.1| NAD(P)H-quinone oxidoreductase subunit K [Hippea maritima DSM
10411]
Length = 153
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 94/151 (62%), Positives = 117/151 (77%), Gaps = 1/151 (0%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
++ T +D+LV+WAR SL MTFGLACCA+EMM R+DL+RFG RASPR S
Sbjct: 3 VENPWITTKLDKLVSWARYSSLWPMTFGLACCAIEMMATGASRFDLDRFGVVFRASPRHS 62
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
D+MI+AGTLT KMA A R+VYDQMP P++VISMGSCAN GG + +YSVV+G D I+PVD
Sbjct: 63 DIMIIAGTLTKKMAIAARKVYDQMPHPKWVISMGSCANTGGMF-DTYSVVQGVDTIMPVD 121
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+YVPGCPP E L+YGI+ LQ+KIRR G++K
Sbjct: 122 VYVPGCPPRPEGLLYGIMKLQEKIRREGSMK 152
>gi|281419772|ref|ZP_06250771.1| NADH-quinone oxidoreductase chain B [Prevotella copri DSM 18205]
gi|281406148|gb|EFB36828.1| NADH-quinone oxidoreductase chain B [Prevotella copri DSM 18205]
Length = 241
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 74/178 (41%), Positives = 111/178 (62%), Gaps = 10/178 (5%)
Query: 14 QSSCSLEKVD-------ADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLAC 64
S++ + +I+ E+ G +V S+D + W R+ SL +TFG +C
Sbjct: 4 NKRASIKSIPYDEFKDNDTLEKIAQELNEGGANVVVGSLDAAINWGRSNSLWSLTFGTSC 63
Query: 65 CAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
C +E M RYD RFGF R SPRQ+D+++ AGT+TNKMA +R+YD+M EP+YV
Sbjct: 64 CGIEFMAVGCARYDFSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYV 123
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+++G C GG + SY+VVRG +VPVD+Y+PGCPP EA++YG++ LQ+K++
Sbjct: 124 VAVGGCTISGGPFKKSYNVVRGISELVPVDVYIPGCPPRPEAILYGMMQLQRKVKVEK 181
>gi|310800125|gb|EFQ35018.1| NADH-quinone oxidoreductase [Glomerella graminicola M1.001]
Length = 201
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 112/160 (70%), Positives = 128/160 (80%), Gaps = 3/160 (1%)
Query: 28 RISSEITHKGFL---VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ S+ KG + +TS+D + WAR SL MTFGLACCAVEMM S PRYD +R G
Sbjct: 37 PLPSQEGTKGVMQYALTSLDVITNWARQSSLWPMTFGLACCAVEMMHLSTPRYDQDRLGI 96
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSYSVVR
Sbjct: 97 IFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVR 156
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GCDR+VPVD+YVPGCPPT+EAL+YGI LQ+K+R +
Sbjct: 157 GCDRVVPVDVYVPGCPPTSEALMYGIFQLQRKMRNTKITR 196
>gi|260885204|ref|ZP_05734514.2| NADH dehydrogenase I subunit B [Prevotella tannerae ATCC 51259]
gi|260853160|gb|EEX73029.1| NADH dehydrogenase I subunit B [Prevotella tannerae ATCC 51259]
Length = 214
Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats.
Identities = 74/164 (45%), Positives = 111/164 (67%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + + ++ +E+ G +V +D L+ W R+ SL +TF +CC +E M RYD
Sbjct: 19 KDNETYEKLVAELNANGANVIVKPLDDLINWGRSNSLWPLTFATSCCGIEFMAVCAARYD 78
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
+ RFGF R SPRQ+DV++V+GT+TNKMA L+R+YDQM +P+YV+++G CA GG +
Sbjct: 79 IARFGFEVTRNSPRQADVILVSGTITNKMAPVLKRLYDQMADPKYVVAIGGCATTGGPFV 138
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY VV+G D I+PV++YVPGCPP EA +YG++ LQ+ ++
Sbjct: 139 KSYHVVKGVDEIIPVNVYVPGCPPRPEAFLYGMMQLQRIVKAEN 182
>gi|330913880|ref|XP_003296406.1| hypothetical protein PTT_06502 [Pyrenophora teres f. teres 0-1]
gi|311331451|gb|EFQ95498.1| hypothetical protein PTT_06502 [Pyrenophora teres f. teres 0-1]
Length = 230
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 116/178 (65%), Positives = 132/178 (74%), Gaps = 4/178 (2%)
Query: 11 ISGQSSCSLEKVDADFS-RISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCA 66
I G +A + S+ KG + +T++DQ+ WAR SL MTFGLACCA
Sbjct: 48 IPGNPGTPPPMKNARVEVPLPSQEGKKGAMQYALTTLDQVANWARQSSLWPMTFGLACCA 107
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
VEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISM
Sbjct: 108 VEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISM 167
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPTAEAL+YG+ LQKK+R +
Sbjct: 168 GSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMRHTKITR 225
>gi|29349474|ref|NP_812977.1| NADH dehydrogenase subunit B [Bacteroides thetaiotaomicron
VPI-5482]
gi|81586646|sp|Q8A0F5|NUOB_BACTN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|29341383|gb|AAO79171.1| NADH dehydrogenase I, chain B [Bacteroides thetaiotaomicron
VPI-5482]
Length = 197
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 74/162 (45%), Positives = 108/162 (66%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D LV W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NESLEKLVKELNTGGANVFLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y V+ G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|255007685|ref|ZP_05279811.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis 3_1_12]
Length = 196
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 75/162 (46%), Positives = 107/162 (66%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G V +D L+ W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NESLEKMVKELNEGGANVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFRKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|166363918|ref|YP_001656191.1| NADH dehydrogenase subunit B [Microcystis aeruginosa NIES-843]
gi|218527913|sp|B0JSV5|NDHK_MICAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|166086291|dbj|BAG00999.1| NADH dehydrogenase subunit [Microcystis aeruginosa NIES-843]
Length = 247
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 78/179 (43%), Positives = 119/179 (66%), Gaps = 4/179 (2%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
T+ ++II QS L ++ ++++ +++ ++T+VD L WAR SL M +G A
Sbjct: 6 TSEFKQIIEQQSEKILNPIER--TKVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGTA 62
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YV
Sbjct: 63 CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYV 122
Query: 124 ISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
I+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KK+
Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKVANES 181
>gi|255691139|ref|ZP_05414814.1| NADH dehydrogenase I, B subunit [Bacteroides finegoldii DSM 17565]
gi|260623232|gb|EEX46103.1| NADH dehydrogenase I, B subunit [Bacteroides finegoldii DSM 17565]
Length = 200
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 74/162 (45%), Positives = 107/162 (66%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NESLEKLVKELNAGGANIALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YVI++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVIAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIER 181
>gi|78043958|ref|YP_360256.1| NADH dehydrogenase subunit B [Carboxydothermus hydrogenoformans
Z-2901]
gi|123576172|sp|Q3AC78|NUOB_CARHZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|77996073|gb|ABB14972.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Carboxydothermus hydrogenoformans Z-2901]
Length = 166
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 80/156 (51%), Positives = 108/156 (69%), Gaps = 1/156 (0%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88
++ K +T++D + WAR SL +TFGLACCA+E+M A P+YD RFG+ R
Sbjct: 10 EEKLIGKNVFLTTLDAVFNWARGNSLWPLTFGLACCAIEVMAAGGPKYDFSRFGYEVWRP 69
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPR +D+MIVAGT+T KM + R+Y+QM EP+YVI+MGSCA GG + SY VV G +
Sbjct: 70 SPRHADLMIVAGTITKKMQPLVLRLYEQMAEPKYVIAMGSCAISGGPFVDSYHVVPGANT 129
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PVD+Y+PGCPP EAL+YG L L++KI+ VK
Sbjct: 130 FLPVDVYIPGCPPRPEALLYGWLELKRKIQNPRVVK 165
>gi|237714284|ref|ZP_04544765.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
D1]
gi|229445776|gb|EEO51567.1| trifunctional NADH dehydrogenase I subunit B/C/D [Bacteroides sp.
D1]
Length = 207
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+
Sbjct: 27 NESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 86
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + S
Sbjct: 87 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKS 146
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 147 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 188
>gi|39998533|ref|NP_954484.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter
sulfurreducens PCA]
gi|81700831|sp|Q746S4|NUBCD_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
Full=NADH dehydrogenase I subunit B/C/D; AltName:
Full=NDH-1 subunit B/C/D
gi|39985480|gb|AAR36834.1| NADH dehydrogenase I, B/C/D subunits [Geobacter sulfurreducens PCA]
gi|298507477|gb|ADI86200.1| NADH dehydrogenase I, B/C/D subunits [Geobacter sulfurreducens
KN400]
Length = 792
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 78/154 (50%), Positives = 110/154 (71%), Gaps = 2/154 (1%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88
+E+ ++ S+D L+ W R SL M FGL+CC VEMM + RYD+ RFG R
Sbjct: 3 ETEVPQNNIILASLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAEVLRG 62
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
+PR++D+M++AGT+ KMA ++ R+Y+QM EP++VISMGSCAN GG Y YSVV+G ++
Sbjct: 63 TPREADLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMY-DVYSVVQGVNQ 121
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
I+PVD++VPGCPP EA + G++LLQ+KIRR
Sbjct: 122 IIPVDVHVPGCPPRPEAFLQGLMLLQEKIRREER 155
>gi|186685599|ref|YP_001868795.1| NADH dehydrogenase subunit B [Nostoc punctiforme PCC 73102]
gi|218527915|sp|B2J6S6|NDHK_NOSP7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|186468051|gb|ACC83852.1| NADH-quinone oxidoreductase, B subunit [Nostoc punctiforme PCC
73102]
Length = 245
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 74/177 (41%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+N + + + ++ + ++ +++ ++T+VD L WAR SL + FG ACC
Sbjct: 3 LNSNLTTQDKQRIINPIER--TNVTQDLSE-NVILTTVDDLYDWARLSSLWPLLFGTACC 59
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
+E R+D +RFG PR+SPRQ+D++I AGT+T KMA L R+Y+QMPEP+YVI+
Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119
Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI
Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKISNES 176
>gi|157325534|ref|YP_001468312.1| NADH dehydrogenase subunit K [Ipomoea purpurea]
gi|218527909|sp|A7Y3E1|NDHK_IPOPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|157056762|gb|ABV02352.1| NADH-plastoquinone oxidoreductase subunit K [Ipomoea purpurea]
Length = 235
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 1 MNSIQFPLLDRTAKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160
>gi|189459784|ref|ZP_03008569.1| hypothetical protein BACCOP_00413 [Bacteroides coprocola DSM 17136]
gi|189433513|gb|EDV02498.1| hypothetical protein BACCOP_00413 [Bacteroides coprocola DSM 17136]
Length = 200
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 78/166 (46%), Positives = 111/166 (66%), Gaps = 3/166 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + R+ E+ G ++ +VDQL+ W R+ SL +TFG +CCA+E M RYD
Sbjct: 17 KNNDYLQRMVDELNRDGAGVVIGTVDQLIEWGRSNSLWSLTFGTSCCAIEFMALGAARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
+ RFGF R SPRQ+D+++V GT+T KMA L+R+YDQM EP+YV+++G C GG +
Sbjct: 77 MARFGFEVTRNSPRQADMIMVLGTITYKMAPVLKRLYDQMAEPKYVVAVGGCTISGGPFI 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SY VV G D+I+PVD+Y+PGCPP EA YG++ LQ+KI+ +
Sbjct: 137 KSYHVVNGIDKIIPVDVYIPGCPPRPEAFYYGMMQLQRKIKVEKFL 182
>gi|325104079|ref|YP_004273733.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145]
gi|324972927|gb|ADY51911.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145]
Length = 161
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ ++ + G +VT +D L+ W+R SL ++FGLACCA+EMM + +D +R G PR
Sbjct: 2 SLEKQLENGGLIVTKLDDLLNWSRLSSLWPLSFGLACCAIEMMGSYSSNFDFDRLGVFPR 61
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
SPRQ+DV+I+AGT+T KMA ++R+Y+QMPEP+YVISMGSC+N GG Y + Y VV+G
Sbjct: 62 PSPRQADVIIIAGTVTFKMAERIKRLYEQMPEPKYVISMGSCSNCGGPYWEHGYHVVKGV 121
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRI+PVD+YV GCPP EALI I+ LQ+KI + +
Sbjct: 122 DRIIPVDVYVQGCPPRPEALIGAIIELQQKIEKESLL 158
>gi|189426186|ref|YP_001953363.1| NADH-quinone oxidoreductase, B subunit [Geobacter lovleyi SZ]
gi|238065152|sp|B3E9W8|NUOB_GEOLS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|189422445|gb|ACD96843.1| NADH-quinone oxidoreductase, B subunit [Geobacter lovleyi SZ]
Length = 169
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 80/147 (54%), Positives = 106/147 (72%), Gaps = 1/147 (0%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
VTS+D+LV W R S+ MTFGLACCA+EMM DL+RFG RASPRQ+D
Sbjct: 9 GNVTVTSLDKLVNWVRKSSIWPMTFGLACCAIEMMATGASHNDLDRFGIIFRASPRQADC 68
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
+I+AGT+T KM ++ VY+QMPEP++VI+MG+CA GG + +YSVV+G D +PVD+Y
Sbjct: 69 IIIAGTVTKKMLPVIQTVYEQMPEPKWVIAMGACACSGGIF-DTYSVVQGIDEALPVDVY 127
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGN 182
+PGCPP EAL+YG++ LQ KI + N
Sbjct: 128 IPGCPPRPEALLYGLMKLQDKIMQESN 154
>gi|330794647|ref|XP_003285389.1| NADH dehydrogenase [Dictyostelium purpureum]
gi|325084659|gb|EGC38082.1| NADH dehydrogenase [Dictyostelium purpureum]
Length = 178
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 115/168 (68%), Positives = 133/168 (79%)
Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
L K+ A + + +++ +D LV WARTGSL MTFGLACCAVEMMQ
Sbjct: 5 GQHLSKLLASSFKAAPPNGMPEVVISKLDGLVNWARTGSLWPMTFGLACCAVEMMQGYAA 64
Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
RYD++RFG PRASPRQSD +IVAGTLTNKMA ALR+VYDQMP PRYV+SMGSCANGGGY
Sbjct: 65 RYDMDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVVSMGSCANGGGY 124
Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YHYSYSVVRGCDRI+PVD+Y+PGCPPTAEA +YGIL LQKK+RR N+
Sbjct: 125 YHYSYSVVRGCDRIIPVDVYMPGCPPTAEAFVYGILQLQKKMRREQNL 172
>gi|223931071|ref|YP_002586932.1| NADH-plastoquinone oxidoreductase subunit K [Syntrichia ruralis]
gi|219562285|gb|ACL27616.1| NADH-plastoquinone oxidoreductase subunit K [Syntrichia ruralis]
Length = 249
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 72/181 (39%), Positives = 113/181 (62%), Gaps = 5/181 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M L + + + + + + +S++ ++T+ + WAR SL + +
Sbjct: 1 MVLNSTSYNYKNKMN----NSMKPLINSLSNQKNPNSIILTTFNDFSNWARLSSLWPLLY 56
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G +CC +E R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP
Sbjct: 57 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEP 116
Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+YVI+MG+C GG + SYS VRG D+++PVDIY+PGCPP EA+I I+ L+KK+ +
Sbjct: 117 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKVAQ 176
Query: 180 V 180
Sbjct: 177 E 177
>gi|299140925|ref|ZP_07034063.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Prevotella oris C735]
gi|298577891|gb|EFI49759.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Prevotella oris C735]
Length = 247
Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 111/164 (67%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + +I+ E+ G +V S+DQ + W R+ SL +TFG +CC +E M RYD
Sbjct: 24 KDNDSLEKITQELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 83
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA +R+YD++ EP+YV+++G C GG +
Sbjct: 84 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 143
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY+VVRG D +VPVD+Y+PGCPP EA++YG++ LQ+K++
Sbjct: 144 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVKVEK 187
>gi|290489714|gb|ADD31241.1| NADH-plastoquinone oxidoreductase subunit K protein [Lonicera
japonica]
Length = 247
Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats.
Identities = 73/177 (41%), Positives = 110/177 (62%), Gaps = 5/177 (2%)
Query: 9 KIISGQSSCSLEKVDADFSRIS----SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
+ + K+D + I + T + T+++ L W+R SL + +G +C
Sbjct: 6 EYSDNKQKNEKNKIDTVMNSIEFPLLDQTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSC 65
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
C +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI
Sbjct: 66 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 125
Query: 125 SMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 126 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182
>gi|298384973|ref|ZP_06994532.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Bacteroides sp. 1_1_14]
gi|298262117|gb|EFI04982.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Bacteroides sp. 1_1_14]
Length = 197
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 74/162 (45%), Positives = 108/162 (66%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D LV W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NESLEKLVKELNAGGANVFLGVLDDLVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y V+ G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVLNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|91214129|ref|YP_538751.1| NADH dehydrogenase subunit K [Glycine max]
gi|88984614|sp|P31175|NDHK_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|83595730|gb|ABC25111.1| NADH-plastoquinone oxidoreductase subunit K [Glycine max]
Length = 212
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160
>gi|50423781|ref|XP_460475.1| DEHA2F02552p [Debaryomyces hansenii CBS767]
gi|49656144|emb|CAG88782.1| DEHA2F02552p [Debaryomyces hansenii]
Length = 208
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 105/167 (62%), Positives = 128/167 (76%), Gaps = 2/167 (1%)
Query: 20 EKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
+ + DF +S + + +TS+D + WAR S +TFGLACCAVEMM S PRY
Sbjct: 37 KPLATDFPLMSQKTASAPVDYALTSLDAIANWARKSSFWPVTFGLACCAVEMMHVSTPRY 96
Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
D +R G RASPRQSD+MIVAGT+TNKMA ALR+VYDQM +PR+VISMGSCANGGGYYH
Sbjct: 97 DQDRLGIIFRASPRQSDIMIVAGTVTNKMAPALRQVYDQMADPRWVISMGSCANGGGYYH 156
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSYSVVRGCDR++PVD+YVPGCPPTAEAL+YG+ LQKK+ + +
Sbjct: 157 YSYSVVRGCDRLIPVDVYVPGCPPTAEALMYGVFQLQKKMMKTRITR 203
>gi|53712161|ref|YP_098153.1| NADH dehydrogenase subunit B [Bacteroides fragilis YCH46]
gi|60680345|ref|YP_210489.1| NADH dehydrogenase subunit B [Bacteroides fragilis NCTC 9343]
gi|253563801|ref|ZP_04841258.1| NADH dehydrogenase I [Bacteroides sp. 3_2_5]
gi|265765492|ref|ZP_06093767.1| NADH dehydrogenase I [Bacteroides sp. 2_1_16]
gi|81316585|sp|Q5LH49|NUOB_BACFN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81608667|sp|Q64Y07|NUOB_BACFR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|52215026|dbj|BAD47619.1| NADH dehydrogenase I chain B [Bacteroides fragilis YCH46]
gi|60491779|emb|CAH06537.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis NCTC
9343]
gi|251947577|gb|EES87859.1| NADH dehydrogenase I [Bacteroides sp. 3_2_5]
gi|263254876|gb|EEZ26310.1| NADH dehydrogenase I [Bacteroides sp. 2_1_16]
gi|301161878|emb|CBW21422.1| NADH-quinone oxidoreductase chain B [Bacteroides fragilis 638R]
Length = 196
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 75/162 (46%), Positives = 107/162 (66%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G V +D L+ W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NESLEKMVKELNEGGANVFVGVLDDLINWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFRKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|21673597|ref|NP_661662.1| NADH dehydrogenase I, 20 kDa subunit [Chlorobium tepidum TLS]
gi|81791547|sp|Q8KEC2|NUOB_CHLTE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|21646711|gb|AAM72004.1| NADH dehydrogenase I, 20 kdA subunit [Chlorobium tepidum TLS]
Length = 189
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 91/154 (59%), Positives = 117/154 (75%), Gaps = 1/154 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ + I+++ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+
Sbjct: 4 LDARISNRNVLVTSVDNVMNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
SPRQSD+MIVAGT+T KMA + +Y+QMPEPRYV+SMGSC+N GG Y + Y V++G D
Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVTLYEQMPEPRYVLSMGSCSNSGGPYWHHGYHVLKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
RI+PVD+YVPGCPP EALI G++ +Q+ IR G
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157
>gi|189500538|ref|YP_001960008.1| NADH dehydrogenase subunit B [Chlorobium phaeobacteroides BS1]
gi|238055285|sp|B3EKA0|NUOB_CHLPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|189495979|gb|ACE04527.1| NADH-quinone oxidoreductase, B subunit [Chlorobium phaeobacteroides
BS1]
Length = 190
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 91/154 (59%), Positives = 117/154 (75%), Gaps = 1/154 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ ++I++ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+
Sbjct: 4 LDAKISNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y + Y V++G D
Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWKHGYHVLKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
RI+PVD+YVPGCPP EALI G++ +Q+ IR
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIRMEQ 157
>gi|160886847|ref|ZP_02067850.1| hypothetical protein BACOVA_04861 [Bacteroides ovatus ATCC 8483]
gi|260171803|ref|ZP_05758215.1| NADH dehydrogenase I, chain B [Bacteroides sp. D2]
gi|299148405|ref|ZP_07041467.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Bacteroides sp. 3_1_23]
gi|315920115|ref|ZP_07916355.1| NADH-quinone oxidoreductase [Bacteroides sp. D2]
gi|156107258|gb|EDO09003.1| hypothetical protein BACOVA_04861 [Bacteroides ovatus ATCC 8483]
gi|298513166|gb|EFI37053.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Bacteroides sp. 3_1_23]
gi|313693990|gb|EFS30825.1| NADH-quinone oxidoreductase [Bacteroides sp. D2]
Length = 200
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|189196624|ref|XP_001934650.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187980529|gb|EDU47155.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 209
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 114/184 (61%), Positives = 133/184 (72%), Gaps = 2/184 (1%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTF 60
+ T + + ++K + S E + +T++DQ+ WAR SL MTF
Sbjct: 21 MKTPATIPGNPGTPPPMKKARVEVPLPSQEGKKGAMQYALTTLDQVANWARQSSLWPMTF 80
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+P
Sbjct: 81 GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDP 140
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPTAEAL+YG+ LQKK+R
Sbjct: 141 RWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTAEALMYGVFQLQKKMRHT 200
Query: 181 GNVK 184
+
Sbjct: 201 KITR 204
>gi|75908080|ref|YP_322376.1| NADH dehydrogenase subunit B [Anabaena variabilis ATCC 29413]
gi|6685694|sp|Q9XBL7|NDHK_ANAVT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|5139342|emb|CAB45647.1| NDH-K protein [Anabaena variabilis]
gi|75701805|gb|ABA21481.1| NADH dehydrogenase subunit B [Anabaena variabilis ATCC 29413]
Length = 245
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 112/175 (64%), Gaps = 4/175 (2%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+N + + + ++ ++ +++ ++T+VD L WAR SL + FG ACC
Sbjct: 3 LNSDLTTQDKERIINPIERPT--VTQDLSE-NVILTTVDDLYNWARLSSLWPLLFGTACC 59
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
+E R+D +RFG PR+SPRQ+D++I AGT+T KMA L R+Y+QMPEP+YVI+
Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119
Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI
Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKIAN 174
>gi|320580734|gb|EFW94956.1| NADH-ubiquinone oxidoreductase subunit [Pichia angusta DL-1]
Length = 193
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 108/175 (61%), Positives = 128/175 (73%), Gaps = 3/175 (1%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + ++ + +++ +S+ + + TS D+L WAR S TFGL
Sbjct: 9 VARFSTSVLRAKPQLEVDRPVLSELPLSNSLD---YAFTSFDKLKNWARKSSFWPATFGL 65
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM S PRYD +R G RASPRQSDVMIVAGT+TNKMA ALR+VYDQMP PR+
Sbjct: 66 ACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDVMIVAGTVTNKMAPALRQVYDQMPYPRW 125
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVPGCPP++EAL+YGI LQKKI
Sbjct: 126 VISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVPGCPPSSEALMYGIFRLQKKI 180
>gi|193216261|ref|YP_001997460.1| NADH dehydrogenase subunit B [Chloroherpeton thalassium ATCC 35110]
gi|238065031|sp|B3QY47|NUOB2_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|193089738|gb|ACF15013.1| NADH-quinone oxidoreductase, B subunit [Chloroherpeton thalassium
ATCC 35110]
Length = 195
Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats.
Identities = 87/154 (56%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ + G ++T+ + ++ WAR SL M FGLACCA+EMM + YDLERFG PR+
Sbjct: 4 LDQKFDKGGVVITAAENVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y + Y VV+G D
Sbjct: 64 SPRQSDLMIVAGTVTFKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVVKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
RI+PVD+YVPGCPP EALI G++ +Q+ IR
Sbjct: 124 RIIPVDVYVPGCPPRPEALIGGLMKVQELIREEK 157
>gi|42520927|ref|NP_966842.1| NADH dehydrogenase subunit B [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|58698296|ref|ZP_00373213.1| NADH-quinone oxidoreductase, B subunit [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225630974|ref|YP_002727765.1| NADH dehydrogenase I, B subunit [Wolbachia sp. wRi]
gi|225631316|ref|ZP_03787991.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|81652220|sp|Q73G42|NUOB_WOLPM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|254767799|sp|C0R4Y2|NUOB_WOLWR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|42410668|gb|AAS14776.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|58535169|gb|EAL59251.1| NADH-quinone oxidoreductase, B subunit [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225590991|gb|EEH12198.1| NADH dehydrogenase I, B subunit [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225592955|gb|ACN95974.1| NADH dehydrogenase I, B subunit [Wolbachia sp. wRi]
Length = 168
Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats.
Identities = 114/153 (74%), Positives = 128/153 (83%), Gaps = 4/153 (2%)
Query: 34 THKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
+GFLVT L + WAR+GSL MTFGLACCAVEMM + RYDL+R+G RAS
Sbjct: 15 KKEGFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRAS 74
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSDVMIVAGTLTNKMA+ALR+VYDQM +P+YVISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 75 PRQSDVMIVAGTLTNKMAAALRKVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRI 134
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VPVD+YVPGCPPTAEAL+YG+L LQ KI+R N
Sbjct: 135 VPVDVYVPGCPPTAEALLYGMLCLQNKIKRTRN 167
>gi|237719852|ref|ZP_04550333.1| NADH dehydrogenase subunit I B [Bacteroides sp. 2_2_4]
gi|262408339|ref|ZP_06084886.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 2_1_22]
gi|293373614|ref|ZP_06619962.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CMC
3f]
gi|294809425|ref|ZP_06768130.1| NADH-quinone oxidoreductase, B subunit [Bacteroides xylanisolvens
SD CC 1b]
gi|298480351|ref|ZP_06998549.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Bacteroides sp. D22]
gi|229451121|gb|EEO56912.1| NADH dehydrogenase subunit I B [Bacteroides sp. 2_2_4]
gi|262353891|gb|EEZ02984.1| NADH-quinone oxidoreductase subunit C/D [Bacteroides sp. 2_1_22]
gi|292631439|gb|EFF50069.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CMC
3f]
gi|294443361|gb|EFG12123.1| NADH-quinone oxidoreductase, B subunit [Bacteroides xylanisolvens
SD CC 1b]
gi|298273632|gb|EFI15195.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Bacteroides sp. D22]
Length = 200
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|154795239|ref|YP_001312203.2| NADH dehydrogenase subunit K [Cycas taitungensis]
gi|218527897|sp|A6H5H8|NDHK_CYCTA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 261
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 105/155 (67%), Gaps = 1/155 (0%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
S + + T + T+++ L WAR SL + +G +CC +E R+D +R+G P
Sbjct: 6 SPLLGQTTPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 65
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
R+SPRQ+D++I AGT+T KMA +L R+Y+QMP P+YVI+MG+C GG + SYS VRG
Sbjct: 66 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPGPKYVIAMGACTITGGMFSTDSYSTVRG 125
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I+ L+KK+ R
Sbjct: 126 VDKLIPVDVYLPGCPPKPEAIIDAIIKLRKKVARE 160
>gi|149941520|dbj|BAF64944.1| NADH dehydrogenase subunit K [Cycas taitungensis]
gi|156598045|gb|ABU85288.1| NADH-plastoquinone oxidoreductase subunit K [Cycas micronesica]
Length = 319
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 105/155 (67%), Gaps = 1/155 (0%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
S + + T + T+++ L WAR SL + +G +CC +E R+D +R+G P
Sbjct: 64 SPLLGQTTPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 123
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
R+SPRQ+D++I AGT+T KMA +L R+Y+QMP P+YVI+MG+C GG + SYS VRG
Sbjct: 124 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPGPKYVIAMGACTITGGMFSTDSYSTVRG 183
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I+ L+KK+ R
Sbjct: 184 VDKLIPVDVYLPGCPPKPEAIIDAIIKLRKKVARE 218
>gi|67925382|ref|ZP_00518732.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Crocosphaera
watsonii WH 8501]
gi|67852778|gb|EAM48187.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Crocosphaera
watsonii WH 8501]
Length = 247
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 75/181 (41%), Positives = 113/181 (62%), Gaps = 2/181 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M L T + Q A S+++ +++ ++T+VD L WAR SL + +
Sbjct: 1 MSLNTTSDPSAFEQLQKEKILNPAARSQVTQDLSE-NIILTTVDDLHNWARLSSLWPLLY 59
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G ACC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y++MP+P
Sbjct: 60 GTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLITAGTVTMKMAPALVRLYEEMPDP 119
Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+
Sbjct: 120 KYVIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVSN 179
Query: 180 V 180
Sbjct: 180 E 180
>gi|312077007|ref|XP_003141114.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Loa loa]
gi|307763722|gb|EFO22956.1| NADH-ubiquinone oxidoreductase Fe-S protein 7 [Loa loa]
Length = 204
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 107/181 (59%), Positives = 127/181 (70%), Gaps = 1/181 (0%)
Query: 4 TTVNQKIISGQSSCSLEKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
T + + + + S + VT +D L SL MTFGL
Sbjct: 24 TGPTSPMAPAEKGTRPKGIWGMLGSPWQDPLPKGEMAVTRLDDLNNMIHRSSLWPMTFGL 83
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACCAVEMM + PRYD++RFG RASPRQSDVMIVAGT+TNKMA A+RRVYDQMPEP++
Sbjct: 84 ACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTVTNKMAPAVRRVYDQMPEPKW 143
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMGSCANGGGYYHYSYSV++G DRI+PVDIYVPGCPP+AEAL+YG+L LQKK+ G
Sbjct: 144 VISMGSCANGGGYYHYSYSVLKGVDRIIPVDIYVPGCPPSAEALLYGVLQLQKKLSGNGR 203
Query: 183 V 183
V
Sbjct: 204 V 204
>gi|68171628|ref|ZP_00544995.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ehrlichia
chaffeensis str. Sapulpa]
gi|67998949|gb|EAM85633.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Ehrlichia
chaffeensis str. Sapulpa]
Length = 182
Score = 221 bits (563), Expect = 4e-56, Method: Composition-based stats.
Identities = 113/160 (70%), Positives = 127/160 (79%), Gaps = 4/160 (2%)
Query: 27 SRISSEITHKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
++ H+GF+VT L+ WAR+ SL MTFGLACCAVEMM + RYDL+R+
Sbjct: 11 NQFWQSYNHQGFMVTQFSDLINYISNWARSNSLWPMTFGLACCAVEMMHTAASRYDLDRY 70
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM EPRYVISMGSCANGGGYYHYSYSV
Sbjct: 71 GVMFRASPRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSV 130
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VRGCDRIVPVDI+VPGCPPTAEAL+YGI LQ+KI R
Sbjct: 131 VRGCDRIVPVDIFVPGCPPTAEALLYGIFCLQQKINRGNT 170
>gi|227536077|ref|ZP_03966126.1| NADH:ubiquinone oxidoreductase [Sphingobacterium spiritivorum ATCC
33300]
gi|227243974|gb|EEI93989.1| NADH:ubiquinone oxidoreductase [Sphingobacterium spiritivorum ATCC
33300]
Length = 167
Score = 221 bits (562), Expect = 4e-56, Method: Composition-based stats.
Identities = 87/157 (55%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
I +++ + G +V +D L+ WAR S+ ++FG+ACCA+EMM A YDL+R G PR
Sbjct: 2 SIENQLQNNGVVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMASTYDLDRLGVFPR 61
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
SPRQSDVMI+AGT+T KMA +R++Y+QMPEP+YVISMGSC+N GG Y + Y VV+G
Sbjct: 62 PSPRQSDVMIIAGTVTFKMADRIRKLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGV 121
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRI+PVD+YV GCPP EALI L LQKKI + +
Sbjct: 122 DRIIPVDVYVQGCPPRPEALIGAFLELQKKIEKESIL 158
>gi|255036234|ref|YP_003086855.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM
18053]
gi|254948990|gb|ACT93690.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM
18053]
Length = 176
Score = 221 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 93/151 (61%), Positives = 111/151 (73%), Gaps = 1/151 (0%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ G ++T+ + L+ WAR SL M FGLACCA+EMM YDLERFG PR SPR
Sbjct: 6 KTGDGGIILTNAEDLMNWARLSSLWPMGFGLACCAIEMMATYAANYDLERFGIMPRPSPR 65
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIV 150
QSDVMIVAGT+T KMA +RR+Y+QMPEPRYVISMGSC+N GG Y + Y VV+G DRI+
Sbjct: 66 QSDVMIVAGTVTFKMADRIRRLYEQMPEPRYVISMGSCSNCGGPYWEHGYHVVKGVDRII 125
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
PVD+YVPGCPP EALI G + LQ+KIR
Sbjct: 126 PVDVYVPGCPPRPEALIGGFMKLQEKIRGKE 156
>gi|224178049|ref|YP_002600947.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Pyramimonas
parkeae]
gi|215882716|gb|ACJ71089.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Pyramimonas
parkeae]
Length = 232
Score = 221 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
S+++ +++ + T+++ L WAR SL + +G +CC +E R+D +RFG P
Sbjct: 14 SKVTEDLST-NVIFTTLNDLHNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRFGLVP 72
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ VRG
Sbjct: 73 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRG 132
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
D+++PVD+Y+PGCPP EA+I ++ L+KK+ + +
Sbjct: 133 VDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVSQEERI 170
>gi|153807451|ref|ZP_01960119.1| hypothetical protein BACCAC_01731 [Bacteroides caccae ATCC 43185]
gi|149129813|gb|EDM21025.1| hypothetical protein BACCAC_01731 [Bacteroides caccae ATCC 43185]
Length = 200
Score = 221 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NESLEKLVRELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|193212957|ref|YP_001998910.1| NADH dehydrogenase subunit B [Chlorobaculum parvum NCIB 8327]
gi|238055284|sp|B3QP57|NUOB_CHLP8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|193086434|gb|ACF11710.1| NADH-quinone oxidoreductase, B subunit [Chlorobaculum parvum NCIB
8327]
Length = 189
Score = 221 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 89/154 (57%), Positives = 117/154 (75%), Gaps = 1/154 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ ++++++ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+
Sbjct: 4 LDAKVSNRNVLVTSVDNVMNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCD 147
SPRQSD+MIVAGT+T KMA + +Y+QMPEPRYV+SMGSC+N GG Y Y V++G D
Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVTLYEQMPEPRYVLSMGSCSNCGGPYWDHGYHVLKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
R++PVD+YVPGCPP EALI G++ +Q+ IR G
Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157
>gi|146421276|ref|XP_001486588.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
gi|146390003|gb|EDK38161.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 210
Score = 221 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 106/167 (63%), Positives = 127/167 (76%), Gaps = 2/167 (1%)
Query: 20 EKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
+ + D IS + +++TS+D + WAR S +TFGLACCAVEMM S PRY
Sbjct: 39 KPLPTDMPLISQKTASSPVDYVLTSLDTIANWARKSSFWPVTFGLACCAVEMMHVSAPRY 98
Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
D +R G RASPRQSDVMIVAGT+TNKM ALR+VYDQM +PR+VISMGSCANGGGYYH
Sbjct: 99 DQDRLGIIFRASPRQSDVMIVAGTVTNKMGPALRQVYDQMADPRWVISMGSCANGGGYYH 158
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSYSVVRGCDR++PVD+YVPGCPPTAEAL+YG+ LQKK+ R +
Sbjct: 159 YSYSVVRGCDRLIPVDVYVPGCPPTAEALMYGVFRLQKKMMRTRITR 205
>gi|121609761|ref|YP_997568.1| NADH dehydrogenase subunit B [Verminephrobacter eiseniae EF01-2]
gi|218528011|sp|A1WLP3|NUOB_VEREI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|121554401|gb|ABM58550.1| NADH-quinone oxidoreductase, B subunit [Verminephrobacter eiseniae
EF01-2]
Length = 159
Score = 221 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 113/154 (73%), Positives = 129/154 (83%), Gaps = 1/154 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+ +GF+ TS D +V WA+TGSL MTFGLACCAVEM+ ++ RYDL RFG RAS
Sbjct: 3 ENVMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMIHSAAARYDLARFGAEVFRAS 62
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 63 PRQADLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVD+YVPGCPPTAEALIYGIL LQ+KIRR +
Sbjct: 123 VPVDVYVPGCPPTAEALIYGILQLQQKIRRSHTI 156
>gi|317503351|ref|ZP_07961398.1| NADH-quinone oxidoreductase subunit B [Prevotella salivae DSM
15606]
gi|315665530|gb|EFV05150.1| NADH-quinone oxidoreductase subunit B [Prevotella salivae DSM
15606]
Length = 240
Score = 221 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 75/164 (45%), Positives = 111/164 (67%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + +I+ E+ G +V S+DQ + W R+ SL +TFG +CC +E M RYD
Sbjct: 17 KDNDTLEKITKELNEGGVNVIVGSLDQAINWGRSNSLWSLTFGTSCCGIEFMAVGCARYD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D+++ AGT+TNKMA +R+YD++ EP+YV+++G C GG +
Sbjct: 77 FSRFGFEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEIAEPKYVVAVGGCTISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY+VVRG D +VPVD+Y+PGCPP EA++YG++ LQ+K++
Sbjct: 137 KSYNVVRGIDELVPVDVYIPGCPPRPEAILYGMMQLQRKVKIEK 180
>gi|300772047|ref|ZP_07081917.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861]
gi|300760350|gb|EFK57176.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861]
Length = 167
Score = 221 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 87/157 (55%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
I +++ + G +V +D L+ WAR S+ ++FG+ACCA+EMM A YDL+R G PR
Sbjct: 2 SIENQLQNNGVVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMASTYDLDRLGVFPR 61
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
SPRQSDVMI+AGT+T KMA +R++Y+QMPEP+YVISMGSC+N GG Y + Y VV+G
Sbjct: 62 PSPRQSDVMIIAGTVTFKMADRIRKLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGV 121
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
DRI+PVD+YV GCPP EALI L LQKKI + +
Sbjct: 122 DRIIPVDVYVQGCPPRPEALIGAFLELQKKIEKESIL 158
>gi|121593378|ref|YP_985274.1| NADH dehydrogenase subunit B [Acidovorax sp. JS42]
gi|222110087|ref|YP_002552351.1| NADH dehydrogenase subunit b [Acidovorax ebreus TPSY]
gi|218527972|sp|A1W4M3|NUOB_ACISJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065124|sp|B9MEL5|NUOB_DIAST RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|120605458|gb|ABM41198.1| NADH dehydrogenase subunit B [Acidovorax sp. JS42]
gi|221729531|gb|ACM32351.1| NADH-quinone oxidoreductase, B subunit [Acidovorax ebreus TPSY]
Length = 159
Score = 221 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 116/154 (75%), Positives = 129/154 (83%), Gaps = 1/154 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+ +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYDL RFG RAS
Sbjct: 3 EGVMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDLGRFGAEVFRAS 62
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 63 PRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVD+YVPGCPPTAEALIYGI+ LQ+KIRR +
Sbjct: 123 VPVDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156
>gi|121534363|ref|ZP_01666187.1| NADH-quinone oxidoreductase, B subunit [Thermosinus carboxydivorans
Nor1]
gi|121307133|gb|EAX48051.1| NADH-quinone oxidoreductase, B subunit [Thermosinus carboxydivorans
Nor1]
Length = 173
Score = 221 bits (562), Expect = 5e-56, Method: Composition-based stats.
Identities = 88/155 (56%), Positives = 119/155 (76%), Gaps = 1/155 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E+ K ++T+V+ +++WAR SL +T GLACCA+EMM A+ R+DL RFG+ R S
Sbjct: 13 QELLAKNIILTTVETVLSWARGNSLWPLTSGLACCAIEMMCAASGRFDLARFGYEVFRPS 72
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D++I AGTLT KMA L+R+Y+QMPEP+YVI+MGSCAN GG + SY+VV G D +
Sbjct: 73 PRQADLLIAAGTLTWKMAPVLKRLYEQMPEPKYVIAMGSCANTGGPFADSYAVVPGVDYV 132
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PVD+Y+PGCPP EALI+GIL L++KI+ G VK
Sbjct: 133 IPVDVYIPGCPPRPEALIHGILQLKRKIQNPGVVK 167
>gi|145219899|ref|YP_001130608.1| NADH-quinone oxidoreductase, B subunit [Prosthecochloris
vibrioformis DSM 265]
gi|238065192|sp|A4SF47|NUOB_PROVI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|145206063|gb|ABP37106.1| NADH dehydrogenase subunit B [Chlorobium phaeovibrioides DSM 265]
Length = 189
Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats.
Identities = 90/154 (58%), Positives = 117/154 (75%), Gaps = 1/154 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ + ++ + LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+
Sbjct: 4 LDAAVSRQNVLVTSVDSVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y + Y V++G D
Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
R++PVD+YVPGCPP EALI G++ +Q+ IR G
Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKIQELIRMEG 157
>gi|258592356|emb|CBE68665.1| NADH-quinone oxidoreductase subunit 6 (NADH dehydrogenase I chain
6) (NDH-1 subunit 6) [NC10 bacterium 'Dutch sediment']
Length = 181
Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats.
Identities = 86/156 (55%), Positives = 116/156 (74%), Gaps = 2/156 (1%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88
+ +G L+T++D LV WAR S+ +FGLACCA+EMM R+DL RFG R
Sbjct: 15 EEQEFERGLLLTTLDSLVNWARKSSIWPASFGLACCAIEMMATGASRFDLARFGAEVFRG 74
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPRQSD+MIVAG ++ KMA LRR+YDQMPEP++VI+MG+CA+ GG ++ +Y++V+G D+
Sbjct: 75 SPRQSDLMIVAGRVSRKMAPVLRRIYDQMPEPKWVIAMGACASCGGIFN-TYTIVQGVDQ 133
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IVPVD+YVPGCPP E LI+GI+LLQ+KI + K
Sbjct: 134 IVPVDVYVPGCPPRPEQLIHGIMLLQEKIAKERPSK 169
>gi|78188613|ref|YP_378951.1| NADH dehydrogenase subunit B [Chlorobium chlorochromatii CaD3]
gi|123580176|sp|Q3ASW7|NUOB_CHLCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|78170812|gb|ABB27908.1| NADH dehydrogenase subunit B [Chlorobium chlorochromatii CaD3]
Length = 190
Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats.
Identities = 90/154 (58%), Positives = 116/154 (75%), Gaps = 1/154 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ + IT+ LVTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+
Sbjct: 4 LDAGITNHNVLVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
SPRQSD+M+VAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y + Y V++G D
Sbjct: 64 SPRQSDLMLVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNSGGPYWEHGYHVLKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
RI+PVD+YVPGCPP E+LI G++ +Q+ IR
Sbjct: 124 RIIPVDVYVPGCPPRPESLIGGLMKVQELIRMEQ 157
>gi|324522539|gb|ADY48077.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Ascaris
suum]
Length = 210
Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats.
Identities = 96/180 (53%), Positives = 132/180 (73%), Gaps = 1/180 (0%)
Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
G ++ ++ + + + S + ++ + + VD ++ + SL +TFG
Sbjct: 24 GASSTTAQLPANKEAPKGMW-GKFGSPFTGPMSTGEYALARVDDVINLCQRTSLWPLTFG 82
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
LACCAVEMM + PRYD++R+G RASPRQ D++ +AGT+TNKMA ALRR++DQMPE +
Sbjct: 83 LACCAVEMMHFAAPRYDMDRYGVVFRASPRQVDLIFIAGTVTNKMAPALRRIFDQMPEAK 142
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+VISMGSCANGGGYYHY+YSV++GCDR++PVDIYVPGCPPTAEAL+YG+L LQKKI+R
Sbjct: 143 WVISMGSCANGGGYYHYAYSVLKGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKIKRKR 202
>gi|223936528|ref|ZP_03628439.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514]
gi|223894692|gb|EEF61142.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514]
Length = 203
Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats.
Identities = 79/156 (50%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
+ +E++ +G TS++ L W R S+ M FGLACCA+EM+ +M RYDL RFG
Sbjct: 3 EGLRNELSKQGIFTTSMEALYNWGRKNSVWPMQFGLACCAIEMIATTMARYDLARFGAEV 62
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
R SPRQ+D+MIVAGT+T KMA + R+Y+QMPEP+YVI+MG+CA GG + Y+V++G
Sbjct: 63 FRPSPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPKYVIAMGACAISGGPFKQGYNVLKG 122
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
DR +PVD+++PGCPP EALI + LQ+KI
Sbjct: 123 IDRFIPVDVHIPGCPPRPEALIEAFMALQRKIDAQK 158
>gi|17231333|ref|NP_487881.1| NADH dehydrogenase subunit B [Nostoc sp. PCC 7120]
gi|20141594|sp|Q44240|NDHK_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|17132975|dbj|BAB75540.1| NADH dehydrogenase chain K [Nostoc sp. PCC 7120]
Length = 245
Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 112/175 (64%), Gaps = 4/175 (2%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+N + + + ++ I+ +++ ++T+VD L WAR SL + FG ACC
Sbjct: 3 LNSDLTTQDKERIINPIERPT--ITQDLSE-NVILTTVDDLYNWARLSSLWPLLFGTACC 59
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
+E R+D +RFG PR+SPRQ+D++I AGT+T KMA L R+Y+QMPEP+YVI+
Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119
Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI
Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKIAN 174
>gi|206889677|ref|YP_002248748.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|238065023|sp|B5YKI3|NUOB1_THEYD RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|206741615|gb|ACI20672.1| NADH-quinone oxidoreductase chain b 2 [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 199
Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats.
Identities = 82/162 (50%), Positives = 114/162 (70%), Gaps = 1/162 (0%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+ + + ++T++D++ +W R SL +TFGLACCA+EMM + YDL+RF
Sbjct: 11 PVEIEQGIKIVPAANTIITTLDKIASWGRCSSLWPLTFGLACCAIEMMATAASHYDLDRF 70
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G RA+PRQ+DVMI+AGT+T KMA + +Y QMPEPRYVI+MGSCA GG ++ +YS
Sbjct: 71 GIIMRATPRQADVMIIAGTVTKKMAPVIVNLYHQMPEPRYVIAMGSCACSGGIFN-TYST 129
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
V+G D I+PVD+Y+PGCPP EALI G+L LQ+KI+ + K
Sbjct: 130 VQGVDEILPVDVYIPGCPPRPEALIEGLLKLQEKIKTEPHKK 171
>gi|313199634|ref|YP_004021250.1| no product string in file [Isoetes flaccida]
gi|291575363|gb|ADE18076.1| no product string in file [Isoetes flaccida]
Length = 250
Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ S + T ++T+ + L WAR SL + +G +CC +E R+D +R
Sbjct: 22 INSIDSSLLDRTTPNSIVLTTFNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 81
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 82 YGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 141
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I+ L+K++ R
Sbjct: 142 STVRGVDKLIPVDVYLPGCPPKPEAIIDAIVKLRKRVARE 181
>gi|124025086|ref|YP_001014202.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL1A]
gi|218527917|sp|A2C0C7|NDHK_PROM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|123960154|gb|ABM74937.1| putative respiratory-chain NADH dehydrogenase subunit
[Prochlorococcus marinus str. NATL1A]
Length = 249
Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats.
Identities = 71/182 (39%), Positives = 114/182 (62%), Gaps = 4/182 (2%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
+ + + + S V ++++++ ++TS++ L WAR SL + +G A
Sbjct: 8 KSPSSEAVRNLREASCGPVGTPT--VTNDLSE-NIILTSLEDLHNWARLSSLWPLLYGTA 64
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CC +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMP+P+YV
Sbjct: 65 CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYV 124
Query: 124 ISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
I+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 125 IAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVANESI 184
Query: 183 VK 184
+
Sbjct: 185 SE 186
>gi|72383495|ref|YP_292850.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL2A]
gi|123621504|sp|Q46M05|NDHK_PROMT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|72003345|gb|AAZ59147.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. NATL2A]
Length = 249
Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats.
Identities = 71/182 (39%), Positives = 114/182 (62%), Gaps = 4/182 (2%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
+ + + + S V ++++++ ++TS++ L WAR SL + +G A
Sbjct: 8 KSPSSEAVRNLREASCGPVGTPT--VTNDLSE-NIILTSLEDLHNWARLSSLWPLLYGTA 64
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CC +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMP+P+YV
Sbjct: 65 CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYV 124
Query: 124 ISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
I+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 125 IAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVANESI 184
Query: 183 VK 184
+
Sbjct: 185 SE 186
>gi|218440674|ref|YP_002379003.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7424]
gi|238065002|sp|B7KJ51|NDHK_CYAP7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|218173402|gb|ACK72135.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7424]
Length = 247
Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats.
Identities = 75/178 (42%), Positives = 115/178 (64%), Gaps = 4/178 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
LT+ + Q L ++ S+++ +++ ++T+VD L WAR SL + +G
Sbjct: 5 LTSSSDLFTQEQKEKLLNPIN--HSQVTQDLSE-NVILTTVDDLYNWARLSSLWPLLYGT 61
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACC +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+Y
Sbjct: 62 ACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEQMPDPKY 121
Query: 123 VISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+
Sbjct: 122 VIAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIVKLRKKVAN 179
>gi|219848534|ref|YP_002462967.1| NADH dehydrogenase subunit B [Chloroflexus aggregans DSM 9485]
gi|238065029|sp|B8GA16|NUOB2_CHLAD RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|219542793|gb|ACL24531.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aggregans DSM
9485]
Length = 264
Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats.
Identities = 83/159 (52%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
AD E+ +G L+T+V++ W R S+ M FGLACCA+EMM + RYD+ RFG
Sbjct: 2 ADIDPNQLELERQGILLTTVNRFYNWGRRSSIWPMAFGLACCAIEMMAFGLSRYDVARFG 61
Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
RASPRQ+D+MIVAGT+T KMA + R+Y+QM EPRYVISMG+CA GG + Y+V
Sbjct: 62 AELFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMAEPRYVISMGACATSGGPFRDGYNV 121
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+RG D ++PVD+YVPGCPP EAL++ ++ LQ++I R
Sbjct: 122 LRGIDLLIPVDVYVPGCPPRPEALLHALMTLQEQIDRQK 160
>gi|218512130|sp|P06670|NDHK_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 227
Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTSSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKIARE 160
>gi|307154794|ref|YP_003890178.1| NADH-quinone oxidoreductase subunit B [Cyanothece sp. PCC 7822]
gi|306985022|gb|ADN16903.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7822]
Length = 248
Score = 220 bits (560), Expect = 7e-56, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 114/176 (64%), Gaps = 4/176 (2%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
TT + I Q L ++ ++++ +++ ++T+VD L WAR SL M +G A
Sbjct: 6 TTQSDLFIQQQKEQILNPINR--TKVTQDLSE-NVILTTVDDLYNWARLSSLWPMLYGTA 62
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CC +E R+D +RFG PR+SPRQ+D++I AGT+T KM AL R+Y+QMP+P+YV
Sbjct: 63 CCFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMGPALVRLYEQMPDPKYV 122
Query: 124 ISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
I+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+
Sbjct: 123 IAMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVA 178
>gi|5139325|emb|CAB45640.1| NDH-K protein [Nostoc sp. PCC 7120]
Length = 245
Score = 220 bits (560), Expect = 7e-56, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 112/175 (64%), Gaps = 4/175 (2%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+N + + + ++ I+ +++ ++T+VD L WAR SL + FG ACC
Sbjct: 3 LNSDLTTQDKERIINPIERPT--ITQDLSE-NVILTTVDDLYNWARLSSLWPLLFGTACC 59
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
+E R+D +RFG PR+SPRQ+D++I AGT+T KMA L R+Y+QMPEP+YVI+
Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119
Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I ++ L+KKI
Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAMIKLRKKIAN 174
>gi|238493105|ref|XP_002377789.1| formate hydrogenlyase, putative [Aspergillus flavus NRRL3357]
gi|220696283|gb|EED52625.1| formate hydrogenlyase, putative [Aspergillus flavus NRRL3357]
Length = 228
Score = 220 bits (560), Expect = 7e-56, Method: Composition-based stats.
Identities = 106/172 (61%), Positives = 130/172 (75%), Gaps = 4/172 (2%)
Query: 17 CSLEKVDADFSRISSEITHKG----FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
++ K+ + I++ + +T+ DQL+ WAR GSL +TF LACC +EMM
Sbjct: 52 HTVPKLPSQEQGITTNKKEDNGKLEYFLTTTDQLINWARQGSLWPLTFALACCGIEMMHV 111
Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
SMPRYD +R G RASPRQ+DVMIVAGT+TNKMA ALR++YDQMP+P++VISMGSCANG
Sbjct: 112 SMPRYDQDRLGIIFRASPRQADVMIVAGTVTNKMAPALRQLYDQMPDPKWVISMGSCANG 171
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GGYY+YSYSVVRG DR+VPVDIYVPGCPPT EAL+Y I LQKKIRR +
Sbjct: 172 GGYYYYSYSVVRGVDRVVPVDIYVPGCPPTPEALMYAIFQLQKKIRRTKVTR 223
>gi|189468077|ref|ZP_03016862.1| hypothetical protein BACINT_04471 [Bacteroides intestinalis DSM
17393]
gi|189436341|gb|EDV05326.1| hypothetical protein BACINT_04471 [Bacteroides intestinalis DSM
17393]
Length = 199
Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats.
Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NETLEKLVRELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|222475044|ref|YP_002563459.1| NADH dehydrogenase I chain B (nuoB) [Anaplasma marginale str.
Florida]
gi|238065053|sp|B9KI91|NUOB_ANAMF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|222419180|gb|ACM49203.1| NADH dehydrogenase I chain B (nuoB) [Anaplasma marginale str.
Florida]
Length = 190
Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats.
Identities = 116/157 (73%), Positives = 129/157 (82%), Gaps = 4/157 (2%)
Query: 27 SRISSEITHKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+ +GF+VT VD +V W+R+GSL MTFGLACCAVEMM + RYDL+R+
Sbjct: 26 QELWQGYKDRGFVVTKFSDLVDSVVRWSRSGSLWPMTFGLACCAVEMMHTAASRYDLDRY 85
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G RASPRQ+DVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSV
Sbjct: 86 GVMFRASPRQADVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSV 145
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI R
Sbjct: 146 VRGCDRIVPVDIYVPGCPPTAEALLYGILCLQQKIIR 182
>gi|255941166|ref|XP_002561352.1| Pc16g10420 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585975|emb|CAP93712.1| Pc16g10420 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 209
Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats.
Identities = 104/141 (73%), Positives = 119/141 (84%)
Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
DQLV W R GSL ++FGLACC +EMM SMPRYD +R G RASPRQ+DVMIVAGT+
Sbjct: 64 DQLVNWGRQGSLWPLSFGLACCGIEMMHTSMPRYDQDRLGIIFRASPRQADVMIVAGTVV 123
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
NKMA A+R++YDQMPEP++VISMGSCANGGGYYHYSY+VVRG DRIVPVDIYVPGCPPTA
Sbjct: 124 NKMAPAVRQLYDQMPEPKWVISMGSCANGGGYYHYSYNVVRGVDRIVPVDIYVPGCPPTA 183
Query: 164 EALIYGILLLQKKIRRVGNVK 184
EAL+ GI LLQKK+RR +
Sbjct: 184 EALLQGIFLLQKKMRRTQVTR 204
>gi|295086644|emb|CBK68167.1| NADH dehydrogenase subunit B [Bacteroides xylanisolvens XB1A]
Length = 195
Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats.
Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|241763289|ref|ZP_04761346.1| NADH-quinone oxidoreductase, B subunit [Acidovorax delafieldii 2AN]
gi|241367564|gb|EER61851.1| NADH-quinone oxidoreductase, B subunit [Acidovorax delafieldii 2AN]
Length = 159
Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats.
Identities = 114/154 (74%), Positives = 129/154 (83%), Gaps = 1/154 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+ +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYD+ RFG RAS
Sbjct: 3 EGVMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGAEVFRAS 62
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSD+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 63 PRQSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVD+YVPGCPPTAEALIYGI+ LQ+KIRR +
Sbjct: 123 VPVDVYVPGCPPTAEALIYGIIQLQQKIRRTNTI 156
>gi|6689660|emb|CAB65525.1| subunit NUKM of protein NADH:Ubiquinone Oxidoreductase (Complex I)
[Yarrowia lipolytica]
Length = 210
Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats.
Identities = 109/175 (62%), Positives = 131/175 (74%), Gaps = 2/175 (1%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
+G S + DF S + + + +T++D + WAR GS +TFGLACCAVEM
Sbjct: 31 AGTPRVSSSSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEM 90
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
M S PRYD +R G RASPRQSD+MIVAGTLTNKMA LR+VYDQMPEPR+VISMGSC
Sbjct: 91 MHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSC 150
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
ANGGGYYH+SYSVVRGCDRIVPVD+YVPGCPPT+EAL+YG+ LQ+K+R +
Sbjct: 151 ANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGVFQLQRKMRNTKITR 205
>gi|163847546|ref|YP_001635590.1| NADH dehydrogenase subunit B [Chloroflexus aurantiacus J-10-fl]
gi|222525396|ref|YP_002569867.1| NADH dehydrogenase subunit B [Chloroflexus sp. Y-400-fl]
gi|238065006|sp|A9WED9|NUOB1_CHLAA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|238065008|sp|B9LGT9|NUOB1_CHLSY RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|163668835|gb|ABY35201.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aurantiacus
J-10-fl]
gi|222449275|gb|ACM53541.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus sp. Y-400-fl]
Length = 264
Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats.
Identities = 82/159 (51%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
A+ E+ +G L+T+V++ W R S+ M FGLACCA+EMM + RYD+ RFG
Sbjct: 2 AEIDPTQLELERQGILLTTVNRFYNWGRRSSIWPMAFGLACCAIEMMAFGLSRYDVARFG 61
Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
RASPRQ+D+MIVAGT+T KMA + R+Y+QM EPRYVISMG+CA GG + Y+V
Sbjct: 62 AELFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMAEPRYVISMGACATSGGPFRDGYNV 121
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+RG D ++PVD+YVPGCPP EAL++ ++ LQ++I R
Sbjct: 122 LRGIDLLIPVDVYVPGCPPRPEALLHALMTLQEQIDRQK 160
>gi|118430392|ref|YP_874657.1| NADH-plastoquinone oxidoreductase subunit K [Hordeum vulgare subsp.
vulgare]
gi|29367118|gb|AAO72306.1| NdhK [Hordeum vulgare]
gi|118201046|gb|ABK79417.1| NADH-plastoquinone oxidoreductase subunit K [Hordeum vulgare subsp.
vulgare]
Length = 245
Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 27 PLLDQTSSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 86
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 87 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 146
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 147 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 180
>gi|238065051|sp|B3ET80|NUOB_AMOA5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
Length = 160
Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats.
Identities = 93/156 (59%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
IS++ G ++ +++ L+ WA SL +TFGLACCA+EMM A YDL+R G
Sbjct: 1 MDTISNKTGEGGVIMVALEDLLNWAERSSLWPITFGLACCAIEMMGAYASHYDLDRLGVI 60
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVR 144
PR SPRQ+DVMIV+GT+T KMA ++RR+YDQMPEPRYVISMGSCAN GG Y + Y VV+
Sbjct: 61 PRNSPRQADVMIVSGTVTFKMADSIRRLYDQMPEPRYVISMGSCANCGGPYWQHGYHVVK 120
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
G DRI+PVD+YVPGCPP EALI GIL LQ+KI+
Sbjct: 121 GVDRIIPVDVYVPGCPPRPEALIGGILKLQEKIKAK 156
>gi|66876438|gb|AAY57998.1| NdhK [Jacquemontia tamnifolia]
Length = 224
Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats.
Identities = 68/160 (42%), Positives = 104/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + + T++ L W+R SL + +G +CC +E R+D +R
Sbjct: 1 MNSIQFPFLDQTAKNSVISTTLTDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA++ I L+KKI R
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAILDAITKLRKKISRE 160
>gi|260223141|emb|CBA33408.1| NADH-quinone oxidoreductase subunit B [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 158
Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats.
Identities = 113/150 (75%), Positives = 129/150 (86%), Gaps = 1/150 (0%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQS 93
++GF+ TS D +V WA+TGS+ MTFGLACCAVEMM A+ RYD+ RFG RASPRQS
Sbjct: 6 NEGFVTTSYDSVVNWAKTGSIWPMTFGLACCAVEMMHAAAARYDISRFGSEVFRASPRQS 65
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
D+MIVAGTL NKMA ALR+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 66 DLMIVAGTLCNKMAPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVD 125
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+YVPGCPPTAEAL+YGIL LQ+KIRR +
Sbjct: 126 VYVPGCPPTAEALLYGILQLQQKIRRTQTI 155
>gi|66876431|gb|AAY57993.1| NdhK [Operculina aequisepala]
Length = 235
Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 1 MNSIQFPLLDRTAKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|120609951|ref|YP_969629.1| NADH dehydrogenase subunit B [Acidovorax citrulli AAC00-1]
gi|326316100|ref|YP_004233772.1| NAD(P)H-quinone oxidoreductase subunit K [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|218527970|sp|A1TLL7|NUOB_ACIAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|120588415|gb|ABM31855.1| NADH dehydrogenase subunit B [Acidovorax citrulli AAC00-1]
gi|323372936|gb|ADX45205.1| NAD(P)H-quinone oxidoreductase subunit K [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 159
Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats.
Identities = 115/154 (74%), Positives = 129/154 (83%), Gaps = 1/154 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+ +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYD+ RFG RAS
Sbjct: 3 EGVMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGAEVFRAS 62
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 63 PRQSDLMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVD+YVPGCPPTAEALIYGI+ LQ+KIRR +
Sbjct: 123 VPVDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156
>gi|78221378|ref|YP_383125.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter
metallireducens GS-15]
gi|123572941|sp|Q39ZC4|NUBCD_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
Full=NADH dehydrogenase I subunit B/C/D; AltName:
Full=NDH-1 subunit B/C/D
gi|78192633|gb|ABB30400.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit C / NADH
dehydrogenase subunit B [Geobacter metallireducens
GS-15]
Length = 791
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 77/155 (49%), Positives = 109/155 (70%), Gaps = 2/155 (1%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87
+ + ++T +D L+ W R SL M FGL+CC VEMM + RYD+ RFG R
Sbjct: 1 MEETEIPQNIVLTRLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLR 60
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
+PR++D+M++AGT+ KMA ++ R+Y+QM EP++VISMGSCAN GG Y YSVV+G +
Sbjct: 61 GTPREADLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMY-DVYSVVQGVN 119
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
+I+PVD++VPGCPP EA + G++LLQ+KIRR
Sbjct: 120 QIIPVDVHVPGCPPRPEAFLQGVMLLQEKIRREER 154
>gi|111074959|gb|ABH04821.1| NAD(P)H-quinone oxidoreductase 20 kDa subunit [Heliobacillus
mobilis]
Length = 175
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 79/165 (47%), Positives = 115/165 (69%), Gaps = 1/165 (0%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ VD E+ K ++TS++ + WAR S ++ GLACCA+EMM ++ PR+D+
Sbjct: 5 KNVDVLNDAQVQELVQKNIIMTSLESVFNWARGNSFWPLSSGLACCAIEMMASAGPRFDI 64
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG+ R S RQ+D +I+AGT+T KMA AL R+Y+QMPEP+++++MGSCA GG +
Sbjct: 65 ARFGYEVFRPSVRQADCIIIAGTVTWKMAPALVRLYEQMPEPKWILAMGSCACTGGPFVD 124
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SY+VV G D+I+PVD+Y+PGCPP EALI G L L++K++ V
Sbjct: 125 SYAVVPGVDKILPVDVYIPGCPPRPEALIDGFLKLKEKVQNPTKV 169
>gi|295136982|ref|YP_003587528.1| NADH dehydrogenase subunit K [Pisum sativum]
gi|293338554|gb|ADE43527.1| NADH dehydrogenase subunit K [Pisum sativum]
Length = 227
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|282897133|ref|ZP_06305135.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Raphidiopsis
brookii D9]
gi|281197785|gb|EFA72679.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Raphidiopsis
brookii D9]
Length = 244
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 110/175 (62%), Gaps = 4/175 (2%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
V + + + ++ ++ E++ ++T+VD L WAR SL + FG ACC
Sbjct: 3 VGSNLTTQDKERIINPIERPT--VTQELSE-NVILTTVDDLYNWARLSSLWPLLFGTACC 59
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
+E R+D +RFG PR+SPRQ+D++I AGT+T KM L R+Y+QMPEP+YVI+
Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLLITAGTITMKMGPQLVRLYEQMPEPKYVIA 119
Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
MG+C GG + S S VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI
Sbjct: 120 MGACTITGGMFSVDSPSAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKIAN 174
>gi|153012225|ref|YP_001381740.1| NADH-plastoquinone oxidoreductase subunit K [Medicago truncatula]
Length = 235
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 15 PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 74
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 75 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 134
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 135 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 168
>gi|73921507|sp|O98679|NDHK_PEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|4138389|emb|CAA06191.1| NADH-plastoquinone oxidoreductase subunit, NdhK [Pisum sativum]
Length = 227
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|218527893|sp|Q85XC3|NDHK_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTSSNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160
>gi|301167766|emb|CBW27350.1| NADH dehydrogenase I chain B [Bacteriovorax marinus SJ]
Length = 168
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 83/161 (51%), Positives = 109/161 (67%), Gaps = 2/161 (1%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF- 84
++ + ++ +D W R SL MTFGLACCA+EMM +YDLERFG
Sbjct: 1 MNKERKTLMQDSVVLMKLDDFFNWGRKNSLWPMTFGLACCAIEMMATGASKYDLERFGCG 60
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVV 143
A A+PR++D+MIVAGT+T KMA ++ +Y+QM EP+YVISMGSCAN GG Y + Y V+
Sbjct: 61 AFMATPRRADLMIVAGTVTLKMAPRIKTLYEQMAEPKYVISMGSCANKGGPYWQHGYHVL 120
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+G D IVPVD+YVPGCPP EALI G++ LQKKI ++
Sbjct: 121 KGVDEIVPVDVYVPGCPPRPEALIEGLMTLQKKIANERLLR 161
>gi|33860851|ref|NP_892412.1| NADH dehydrogenase subunit B [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|81576412|sp|Q7V303|NDHK_PROMP RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|33633793|emb|CAE18752.1| putative respiratory-chain NADH dehydrogenase subunit
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 244
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+++++++ ++TS+D L WAR SL + +G ACC +E R+D +RFG P
Sbjct: 24 PQVTTDLSE-NIIMTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 82
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG
Sbjct: 83 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 142
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVD+Y+PGCPP EA+ ++ L+KK+ ++
Sbjct: 143 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVANESILE 181
>gi|289066814|ref|YP_003434332.1| NADH-plastoquinone oxidoreductase subunit K [Vigna radiata]
gi|259020001|gb|ACV90199.1| NADH-plastoquinone oxidoreductase subunit K [Vigna radiata]
Length = 212
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+++ W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTTKNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160
>gi|29337233|sp|Q31791|NDHK_ANTFO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|29122638|dbj|BAC55353.2| NADH dehydrogenase 27 kDa subunit [Anthoceros formosae]
Length = 247
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 74/173 (42%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
K ++ +S + ++ S + E T ++T+ + WAR SL + +G +CC +E
Sbjct: 6 KYLNFESDLAESVTNSMDSSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIE 65
Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+
Sbjct: 66 FASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGA 125
Query: 129 CANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
C GG + SYS VRG D+++PVDIY+PGCPP EA+I I+ L+K + R
Sbjct: 126 CTITGGMFSTDSYSTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVARE 178
>gi|27808002|dbj|BAC55447.1| NADH dehydrogenase 27 kDa subunit [Anthoceros formosae]
Length = 247
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 74/173 (42%), Positives = 112/173 (64%), Gaps = 1/173 (0%)
Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
K ++ +S + ++ S + E T ++T+ + WAR SL + +G +CC +E
Sbjct: 6 KYLNFESDLAESVTNSMDSSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIE 65
Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+
Sbjct: 66 FASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGA 125
Query: 129 CANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
C GG + SYS VRG D+++PVDIY+PGCPP EA+I I+ L+K + R
Sbjct: 126 CTITGGMFSTDSYSTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVARE 178
>gi|150017836|ref|YP_001310090.1| NADH-quinone oxidoreductase, B subunit [Clostridium beijerinckii
NCIMB 8052]
gi|238055288|sp|A6LXQ4|NUOB_CLOB8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|149904301|gb|ABR35134.1| NADH-quinone oxidoreductase, B subunit [Clostridium beijerinckii
NCIMB 8052]
Length = 169
Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats.
Identities = 83/165 (50%), Positives = 114/165 (69%), Gaps = 1/165 (0%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+V+ + E K ++T +D + + R S +TFGLACCA+EMM A RYD+
Sbjct: 1 MEVNFKQDKEIQEQIEKNIILTKLDDTLNYFRAHSFWPLTFGLACCAIEMMAAGGARYDI 60
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG+ RASPRQ+D+MIVAGT+T KMA ++++YDQMPEP++VI+MGSCA GG +
Sbjct: 61 ARFGYEVFRASPRQADLMIVAGTITEKMAPIVKKIYDQMPEPKWVIAMGSCATSGGPFVD 120
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SY+VV G D +PVD+Y+PGCPP EALI+G+L L++KI V
Sbjct: 121 SYNVVPGADTFLPVDVYIPGCPPRPEALIHGLLTLKEKIIHPKEV 165
>gi|88607775|ref|YP_505115.1| NADH dehydrogenase subunit B [Anaplasma phagocytophilum HZ]
gi|123495312|sp|Q2GKI6|NUOB_ANAPZ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|88598838|gb|ABD44308.1| NADH dehydrogenase I, B subunit [Anaplasma phagocytophilum HZ]
Length = 174
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 113/159 (71%), Positives = 129/159 (81%), Gaps = 4/159 (2%)
Query: 27 SRISSEITHKGFLVTSVDQLV----TWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+ + +GF+VT L+ WAR+GSL MTFGLACCAVEMM + RYDL+R+
Sbjct: 10 NDLWQGYKDQGFVVTQFSDLIERVLKWARSGSLWPMTFGLACCAVEMMHTAASRYDLDRY 69
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G RASPRQ+DVMIVAGTLTNKMA ALRRVYDQM +P+YVISMGSCANGGGYYHYSYSV
Sbjct: 70 GIMFRASPRQADVMIVAGTLTNKMAPALRRVYDQMADPKYVISMGSCANGGGYYHYSYSV 129
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQ+KI R G
Sbjct: 130 VRGCDRVVPVDIYVPGCPPTAEALLYGLLCLQQKILRNG 168
>gi|42795491|gb|AAS46058.1| NADH dehydrogenase subunit K [Oryza sativa Indica Group]
gi|42795558|gb|AAS46124.1| NADH dehydrogenase subunit K [Oryza sativa Japonica Group]
gi|42795622|gb|AAS46187.1| NADH dehydrogenase subunit K [Oryza sativa Japonica Group]
gi|290790577|gb|ADD62837.1| NADH-plastoquinone oxidoreductase subunit K [Oryza sativa Japonica
Group]
gi|290790646|gb|ADD62905.1| NADH-plastoquinone oxidoreductase subunit K [Oryza meridionalis]
gi|290790715|gb|ADD62973.1| NADH-plastoquinone oxidoreductase subunit K [Oryza australiensis]
Length = 253
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 35 PLLDQTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 94
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 95 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 154
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 155 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 188
>gi|56416679|ref|YP_153753.1| NADH dehydrogenase subunit B [Anaplasma marginale str. St. Maries]
gi|269958902|ref|YP_003328691.1| NADH dehydrogenase subunit B [Anaplasma centrale str. Israel]
gi|81359162|sp|Q5PB32|NUOB_ANAMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|56387911|gb|AAV86498.1| NADH dehydrogenase I chain B [Anaplasma marginale str. St. Maries]
gi|269848733|gb|ACZ49377.1| NADH dehydrogenase subunit B [Anaplasma centrale str. Israel]
Length = 175
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 116/157 (73%), Positives = 129/157 (82%), Gaps = 4/157 (2%)
Query: 27 SRISSEITHKGFLVTS----VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+ +GF+VT VD +V W+R+GSL MTFGLACCAVEMM + RYDL+R+
Sbjct: 11 QELWQGYKDRGFVVTKFSDLVDSVVRWSRSGSLWPMTFGLACCAVEMMHTAASRYDLDRY 70
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G RASPRQ+DVMIVAGTLTNKMA ALRRVYDQM EP+YVISMGSCANGGGYYHYSYSV
Sbjct: 71 GVMFRASPRQADVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSV 130
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI R
Sbjct: 131 VRGCDRIVPVDIYVPGCPPTAEALLYGILCLQQKIIR 167
>gi|154795223|ref|YP_052753.2| NADH dehydrogenase subunit K [Oryza nivara]
gi|154795235|ref|YP_654218.2| NADH dehydrogenase subunit K [Oryza sativa Indica Group]
gi|218511705|sp|Q6ENH0|NDHK_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218511706|sp|P0C341|NDHK_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218511707|sp|P0C342|NDHK_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218511708|sp|P0C343|NDHK_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|20146751|gb|AAM12487.1|AC074232_14 PSII G protein 5'-partial [Oryza sativa Japonica Group]
Length = 225
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160
>gi|49614999|dbj|BAD26782.1| NADH dehydrogenase subunit K [Oryza nivara]
Length = 246
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 28 PLLDQTSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 88 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181
>gi|124360833|gb|ABN08805.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Medicago
truncatula]
Length = 227
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|66876443|gb|AAY58001.1| NdhK [Falkia repens]
Length = 235
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTAKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|298490489|ref|YP_003720666.1| NADH-quinone oxidoreductase subunit B ['Nostoc azollae' 0708]
gi|298232407|gb|ADI63543.1| NADH-quinone oxidoreductase, B subunit ['Nostoc azollae' 0708]
Length = 244
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 76/175 (43%), Positives = 112/175 (64%), Gaps = 4/175 (2%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+N I + + ++ ++ E++ ++T+VD L WAR SL + FG ACC
Sbjct: 3 LNSNITTQDKELIINPIERPT--VTQELSE-NVILTTVDDLYNWARLSSLWPLLFGTACC 59
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
+E R+D +RFG PR+SPRQ+D++I AGT+T KMA L R+Y+QMPEP+YVI+
Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVIA 119
Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI
Sbjct: 120 MGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKIAN 174
>gi|325298883|ref|YP_004258800.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides salanitronis
DSM 18170]
gi|324318436|gb|ADY36327.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides salanitronis
DSM 18170]
Length = 205
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 69/166 (41%), Positives = 109/166 (65%), Gaps = 3/166 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + R+ ++ G ++T+ D+L+ W R+ S+ + G +CCA+E M RYD
Sbjct: 15 KNNDYLERLVQQVNQDGAGVILTTFDELINWGRSNSVWGLLLGTSCCAIEFMALGAARYD 74
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
+ RFGF R SPRQ+DV++V GT+T + A ++R+YDQM EP+YV+++G C GG +
Sbjct: 75 MARFGFEVTRNSPRQADVLVVMGTITYRTAPVMKRLYDQMAEPKYVVAVGGCTISGGPFI 134
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
SY+VV G D+++PVD+Y+PGCPP EA YG++ LQ+K++ +
Sbjct: 135 KSYNVVNGIDKVIPVDVYIPGCPPRPEAFYYGLMQLQRKMKVERYL 180
>gi|292559512|ref|YP_003540935.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera]
gi|290790920|gb|ADD63175.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera]
gi|294620581|gb|ADF28150.1| NADH-plastoquinone oxidoreductase subunit K [Phoenix dactylifera]
Length = 255
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 74/182 (40%), Positives = 112/182 (61%), Gaps = 2/182 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
M LT + + +E V + + T + T+ + L W+R SL +
Sbjct: 1 MVLTEYSDNQNKKEGKDYIETVMNLIEFPLLDQTTPNSVISTTSNDLSNWSRLSSLWPLL 60
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
+G +CC +E R+D +R+G P++SPRQ+D+++ AGT+T KMA +L R+Y+QMPE
Sbjct: 61 YGTSCCFIEFASLIGSRFDFDRYGLVPKSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 120
Query: 120 PRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
P+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI
Sbjct: 121 PKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAIMKLRKKIS 180
Query: 179 RV 180
R
Sbjct: 181 RE 182
>gi|218527958|sp|Q33C30|NDHK_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 1 MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|290489742|gb|ADD31255.1| NADH-plastoquinone oxidoreductase subunit K protein [Plumbago
auriculata]
Length = 285
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 75/185 (40%), Positives = 114/185 (61%), Gaps = 5/185 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRIS----SEITHKGFLVTSVDQLVTWARTGSLM 56
+G+ V + + Q K++ + I IT + T+++ L W+R SL
Sbjct: 36 IGMVLVPEYSNNKQKKGKTNKIERVLNSIEFPLLDRITQNSVISTTLNDLSNWSRLSSLW 95
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
+ +G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+Q
Sbjct: 96 PLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQ 155
Query: 117 MPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
MPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+K
Sbjct: 156 MPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRK 215
Query: 176 KIRRV 180
KI
Sbjct: 216 KISLE 220
>gi|193237723|dbj|BAG50130.1| NADH dehydrogenase 27 kD subunit [Takakia lepidozioides]
Length = 257
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ S + + ++T+ + WAR SL + +G +CC +E R+D +R
Sbjct: 22 INSIESSLLDQTIPNSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 81
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 82 YGLVPRSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 141
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVDIY+PGCPP EA+I I+ L+KK+ +
Sbjct: 142 STVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKVAQE 181
>gi|193237704|dbj|BAG50114.1| NADH dehydrogenase 27 kD subunit [Takakia lepidozioides]
Length = 259
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ S + + ++T+ + WAR SL + +G +CC +E R+D +R
Sbjct: 22 INSIESSLLDQTIPNSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 81
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 82 YGLVPRSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 141
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVDIY+PGCPP EA+I I+ L+KK+ +
Sbjct: 142 STVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKVAQE 181
>gi|197294100|ref|YP_002149721.1| NADH-plastoquinone oxidoreductase subunit K [Cicer arietinum]
gi|197089788|gb|ACH41058.1| NADH-plastoquinone oxidoreductase subunit K [Cicer arietinum]
Length = 227
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|283794972|ref|YP_003359363.1| photosystem II G protein [Olea europaea]
gi|330850747|ref|YP_004376425.1| photosystem II protein G [Olea europaea subsp. europaea]
gi|281428691|gb|ADA69930.1| photosystem II G protein [Olea europaea]
gi|291059257|gb|ADD72093.1| NADH-plastoquinone oxidoreductase subunit K [Olea europaea]
gi|328795437|emb|CBR30319.1| photosystem II protein G [Olea europaea subsp. europaea]
Length = 225
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTVQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|170079340|ref|YP_001735978.1| NADH dehydrogenase subunit B [Synechococcus sp. PCC 7002]
gi|218527931|sp|B1XMK4|NDHK_SYNP2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|169887009|gb|ACB00723.1| NADH dehydrogenase subunit K [Synechococcus sp. PCC 7002]
Length = 243
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 114/179 (63%), Gaps = 4/179 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ Q+ L + S+++ +++ ++T+VD L WAR SL + +G
Sbjct: 1 MVMNPTSFEQQQTEKLLNPMGR--SQVTQDLSE-NVILTTVDDLYNWARLSSLWPLLYGT 57
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACC +E R+D +RFG PR+SPRQ+D+++VAGT+T KMA AL R+Y++MPEP+Y
Sbjct: 58 ACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLILVAGTVTMKMAPALVRLYEEMPEPKY 117
Query: 123 VISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KK+
Sbjct: 118 VIAMGACTITGGMFSSDSTTAVRGVDKLIPVDLYIPGCPPRPEAIIDAIIKLRKKVSNE 176
>gi|22652005|gb|AAN03554.1|AF381040_4 NADH dehydrogenase subunit K [Synechococcus sp. PCC 7002]
Length = 241
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 72/155 (46%), Positives = 109/155 (70%), Gaps = 2/155 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
S+++ +++ ++T+VD L WAR SL + +G ACC +E R+D +RFG P
Sbjct: 21 SQVTQDLSE-NVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAALLGSRFDFDRFGLVP 79
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
R+SPRQ+D+++VAGT+T KMA AL R+Y++MPEP+YVI+MG+C GG + S + VRG
Sbjct: 80 RSSPRQADLILVAGTVTMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTTAVRG 139
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I+ L+KK+
Sbjct: 140 VDKLIPVDLYIPGCPPRPEAIIDAIIKLRKKVSNE 174
>gi|291613539|ref|YP_003523696.1| NADH-quinone oxidoreductase, B subunit [Sideroxydans lithotrophicus
ES-1]
gi|291583651|gb|ADE11309.1| NADH-quinone oxidoreductase, B subunit [Sideroxydans lithotrophicus
ES-1]
Length = 159
Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats.
Identities = 116/150 (77%), Positives = 129/150 (86%), Gaps = 1/150 (0%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93
KGF+ TS D ++ + RTGSL MTFGLACCAVEMM A++PRYDL+RFG A R SPRQS
Sbjct: 8 EKGFITTSADTVINYVRTGSLWPMTFGLACCAVEMMHAALPRYDLDRFGAGAFRPSPRQS 67
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 68 DVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 127
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
IYVPGCPPTAEAL+YGI+ LQ KI+R +
Sbjct: 128 IYVPGCPPTAEALLYGIIQLQNKIKRTNTI 157
>gi|218527963|sp|A9L9A0|NDHK_LEMMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SP
Sbjct: 10 DQTMPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSP 69
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRI 149
RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++
Sbjct: 70 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 129
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 130 IPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|167391809|ref|YP_001671687.1| NADH dehydrogenase subunit K [Carica papaya]
gi|218527885|sp|B1A939|NDHK_CARPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|166344136|gb|ABY86786.1| NADH-plastoquinone oxidoreductase subunit K [Carica papaya]
Length = 225
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|161784196|ref|YP_001595512.1| ndhK protein [Lemna minor]
gi|88696774|gb|ABD48499.1| ndhK protein [Lemna minor]
Length = 243
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SP
Sbjct: 28 DQTMPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFAALIGSRFDFDRYGLVPRSSP 87
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRI 149
RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++
Sbjct: 88 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 147
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 148 IPVDVYLPGCPPKPEAVIDAITKLRKKISRE 178
>gi|148657099|ref|YP_001277304.1| NADH dehydrogenase subunit B [Roseiflexus sp. RS-1]
gi|238065018|sp|A5UXK1|NUOB1_ROSS1 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|148569209|gb|ABQ91354.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus sp. RS-1]
Length = 268
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 80/159 (50%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+D I E G +T++ + W R S+ ++FGLACCA+EMM + R+DL RFG
Sbjct: 2 SDDREIQLEAEKHGVFLTTMQRFYNWGRRSSIWPLSFGLACCAIEMMATGLARFDLARFG 61
Query: 84 FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
RASPRQ+D+MIVAGT+T KMA + R+Y+QMPEPRYVISMG+CA GG + Y+V
Sbjct: 62 AEMFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNV 121
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+RG D ++PVD+Y+PGCPP EAL++ ++ LQK+I
Sbjct: 122 LRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQR 160
>gi|322417697|ref|YP_004196920.1| NADH dehydrogenase I subunit D [Geobacter sp. M18]
gi|320124084|gb|ADW11644.1| NADH dehydrogenase I, D subunit [Geobacter sp. M18]
Length = 794
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
S E + L+TS+D L+ W R SL M FGL+CC VEMM + RYD+ RFG
Sbjct: 1 MSERDDEKIPENVLLTSLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAE 60
Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R +PR+SD+M++AGT+ KMA ++ R+Y+QM EP++VISMGSCAN GG Y YSVV+
Sbjct: 61 VLRGTPRESDLMVIAGTVFKKMAPSILRLYEQMAEPKWVISMGSCANSGGMY-DVYSVVQ 119
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G ++I+PVD+Y+PGCPP E+ + G++LLQKKIR
Sbjct: 120 GVNQILPVDLYIPGCPPRPESFLEGLMLLQKKIRSEER 157
>gi|110456608|gb|ABG74735.1| NADH dehydrogenase 32 kDa subunit [Forsythia europaea]
Length = 225
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTVQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|119491043|ref|ZP_01623201.1| NADH dehydrogenase beta subunit [Lyngbya sp. PCC 8106]
gi|119453588|gb|EAW34748.1| NADH dehydrogenase beta subunit [Lyngbya sp. PCC 8106]
Length = 241
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 74/174 (42%), Positives = 113/174 (64%), Gaps = 4/174 (2%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
+ IS ++ + ++ +++ E++ ++T+VD L WAR SL + +G ACC
Sbjct: 2 TSQSISPETGKIINPIERP--QVTQELSE-NVVLTTVDDLYNWARLSSLWPLLYGTACCF 58
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
+E R+D +RFG PR+SPRQ+D++I AGT+T K A L R+Y+QMPEP+YVI+M
Sbjct: 59 IEFAALIGSRFDFDRFGLVPRSSPRQADLLITAGTITMKYAPVLVRLYEQMPEPKYVIAM 118
Query: 127 GSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
G+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI
Sbjct: 119 GACTITGGMFSMDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKISN 172
>gi|139387440|ref|YP_001122794.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris]
gi|218527930|sp|A4GG93|NDHK_PHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|112030962|gb|ABH88074.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris]
gi|158187161|gb|ABW22794.1| NADH-plastoquinone oxidoreductase subunit K [Phaseolus vulgaris]
Length = 212
Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+++ W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTTQNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160
>gi|289065093|ref|YP_003433979.1| NADH-plastoquinone oxidoreductase subunit K [Typha latifolia]
gi|281371776|gb|ADA63703.1| NADH-plastoquinone oxidoreductase subunit K [Typha latifolia]
Length = 255
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 76/182 (41%), Positives = 111/182 (60%), Gaps = 2/182 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
M LT + + +E V + E T + T+ + L W+R SL +
Sbjct: 1 MVLTEYSDNKKKKEGKDYIETVMNLIEFPLLDETTPNSVISTTSNDLSNWSRLSSLWPLL 60
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
+G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE
Sbjct: 61 YGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 120
Query: 120 PRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
P+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI
Sbjct: 121 PKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIS 180
Query: 179 RV 180
R
Sbjct: 181 RE 182
>gi|29654738|ref|NP_820430.1| NADH dehydrogenase subunit B [Coxiella burnetii RSA 493]
gi|153207226|ref|ZP_01945990.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|154706106|ref|YP_001423957.1| NADH dehydrogenase subunit B [Coxiella burnetii Dugway 5J108-111]
gi|161830495|ref|YP_001597292.1| NADH dehydrogenase subunit B [Coxiella burnetii RSA 331]
gi|165918784|ref|ZP_02218870.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA
334]
gi|212212183|ref|YP_002303119.1| NADH dehydrogenase subunit B [Coxiella burnetii CbuG_Q212]
gi|212218213|ref|YP_002305000.1| NADH dehydrogenase subunit B [Coxiella burnetii CbuK_Q154]
gi|81628735|sp|Q83BQ6|NUOB_COXBU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218527985|sp|A9KBK5|NUOB_COXBN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218527986|sp|A9N8X2|NUOB_COXBR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238055289|sp|B6J695|NUOB_COXB1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238055290|sp|B6IZ46|NUOB_COXB2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|29542006|gb|AAO90944.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii RSA 493]
gi|120576714|gb|EAX33338.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|154355392|gb|ABS76854.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii Dugway
5J108-111]
gi|161762362|gb|ABX78004.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA
331]
gi|165917508|gb|EDR36112.1| NADH dehydrogenase (ubiquinone), B subunit [Coxiella burnetii RSA
334]
gi|212010593|gb|ACJ17974.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii CbuG_Q212]
gi|212012475|gb|ACJ19855.1| NADH-quinone oxidoreductase chain B [Coxiella burnetii CbuK_Q154]
Length = 161
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 114/147 (77%), Positives = 128/147 (87%), Gaps = 1/147 (0%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPR 91
+T +GFL+TS+D L+ WAR+GSL MTFGLACCAVEMMQ + RYDL+RFG R SPR
Sbjct: 5 LTKEGFLLTSLDDLMRWARSGSLWPMTFGLACCAVEMMQCASSRYDLDRFGAGLFRPSPR 64
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
QSDVMIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHY+YSVVRGCDRIVP
Sbjct: 65 QSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYAYSVVRGCDRIVP 124
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
VD+YVPGCPPTAEAL YGI+ L+ KIR
Sbjct: 125 VDVYVPGCPPTAEALFYGIMQLRNKIR 151
>gi|254526480|ref|ZP_05138532.1| NADH dehydrogenase i chain b or ndhk [Prochlorococcus marinus str.
MIT 9202]
gi|221537904|gb|EEE40357.1| NADH dehydrogenase i chain b or ndhk [Prochlorococcus marinus str.
MIT 9202]
Length = 241
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+++++++ ++TS+D L WAR SL + +G ACC +E R+D +RFG P
Sbjct: 24 PQVTTDLSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 82
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG
Sbjct: 83 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 142
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVD+Y+PGCPP EA+ ++ L+KK+ ++
Sbjct: 143 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181
>gi|157412655|ref|YP_001483521.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
9215]
gi|218527918|sp|A8G2V4|NDHK_PROM2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|157387230|gb|ABV49935.1| putative respiratory-chain NADH dehydrogenase subunit
[Prochlorococcus marinus str. MIT 9215]
Length = 241
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+++++++ ++TS+D L WAR SL + +G ACC +E R+D +RFG P
Sbjct: 24 PQVTTDLSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 82
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG
Sbjct: 83 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 142
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVD+Y+PGCPP EA+ ++ L+KK+ ++
Sbjct: 143 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181
>gi|91069905|gb|ABE10834.1| putative respiratory-chain NADH dehydrogenase subunit [uncultured
Prochlorococcus marinus clone ASNC2150]
Length = 244
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+++++++ ++TS+D L WAR SL + +G ACC +E R+D +RFG P
Sbjct: 24 PQVTTDLSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 82
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG
Sbjct: 83 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 142
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVD+Y+PGCPP EA+ ++ L+KK+ ++
Sbjct: 143 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181
>gi|78778680|ref|YP_396792.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
9312]
gi|123554667|sp|Q31CN9|NDHK_PROM9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|78712179|gb|ABB49356.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
9312]
Length = 244
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+++++++ ++TS+D L WAR SL + +G ACC +E R+D +RFG P
Sbjct: 24 PQVTTDLSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 82
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG
Sbjct: 83 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 142
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVD+Y+PGCPP EA+ ++ L+KK+ ++
Sbjct: 143 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181
>gi|282901528|ref|ZP_06309450.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Cylindrospermopsis
raciborskii CS-505]
gi|281193571|gb|EFA68546.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Cylindrospermopsis
raciborskii CS-505]
Length = 245
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 75/175 (42%), Positives = 111/175 (63%), Gaps = 3/175 (1%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
V + + + ++ + ++ E++ ++T+VD L WAR SL + FG ACC
Sbjct: 3 VGSNLTTQDKERIINPIERPTT-VTQELSE-NVILTTVDDLYNWARLSSLWPLLFGTACC 60
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
+E R+D +RFG PR+SPRQ+D++I AGT+T KM L R+Y+QMPEP+YVI+
Sbjct: 61 FIEFAALIGSRFDFDRFGLIPRSSPRQADLLITAGTITVKMGPQLVRLYEQMPEPKYVIA 120
Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
MG+C GG + S S VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI
Sbjct: 121 MGACTITGGMFSVDSPSAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKIAN 175
>gi|126695655|ref|YP_001090541.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
9301]
gi|218527916|sp|A3PB15|NDHK_PROM0 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|126542698|gb|ABO16940.1| putative respiratory-chain NADH dehydrogenase subunit
[Prochlorococcus marinus str. MIT 9301]
Length = 244
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+++++++ ++TS+D L WAR SL + +G ACC +E R+D +RFG P
Sbjct: 24 PQVTTDLSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 82
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG
Sbjct: 83 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 142
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVD+Y+PGCPP EA+ ++ L+KK+ ++
Sbjct: 143 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181
>gi|126165918|ref|YP_398867.2| NADH dehydrogenase subunit K [Nicotiana tomentosiformis]
Length = 247
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 23 MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 83 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 143 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182
>gi|154795231|ref|YP_053159.2| NADH dehydrogenase subunit K [Nymphaea alba]
gi|218527956|sp|Q6EW44|NDHK_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLFDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKVSRE 160
>gi|50250331|emb|CAF28597.1| photosystem II G protein [Nymphaea alba]
Length = 253
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 35 PLFDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 94
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 95 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 154
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 155 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKVSRE 188
>gi|156742064|ref|YP_001432193.1| NADH dehydrogenase subunit B [Roseiflexus castenholzii DSM 13941]
gi|238065038|sp|A7NL05|NUOB2_ROSCS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|156233392|gb|ABU58175.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus castenholzii
DSM 13941]
Length = 268
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 80/159 (50%), Positives = 111/159 (69%), Gaps = 1/159 (0%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+D I E +G +T++ + W R S+ ++FGLACCA+EMM + R+DL RFG
Sbjct: 2 SDDRDIQLEAEKQGVFLTTMQRFYNWGRRSSVWPLSFGLACCAIEMMATGLARFDLARFG 61
Query: 84 FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
RASPRQ+D+MIVAGT+T KMA + R+Y+QMPEPRYVISMG+CA GG + Y+V
Sbjct: 62 AEMFRASPRQADLMIVAGTVTKKMAPQVVRLYNQMPEPRYVISMGACATSGGPFRDGYNV 121
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+RG D ++PVD+Y+PGCPP EAL++ ++ LQK+I
Sbjct: 122 LRGIDLLIPVDVYIPGCPPRPEALLHALMTLQKQIDAQR 160
>gi|11467814|ref|NP_050865.1| NADH dehydrogenase subunit K [Nephroselmis olivacea]
gi|59798437|sp|Q9TKY0|NDHK_NEPOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|5880743|gb|AAD54836.1|AF137379_59 subunit K of NADH-ubiquinone oxidoreductase [Nephroselmis olivacea]
Length = 237
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 115/176 (65%), Gaps = 2/176 (1%)
Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
+IS S+ S I+ E+ + ++T+++ L WAR SL + +G +CC +E
Sbjct: 2 VISSLSNSQPLNAPVSSSPITQELAN-NLILTTLNDLYNWARLSSLWPLLYGTSCCFIEF 60
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
R+D +RFG PR+SPRQ+D++I AGT+T KMA +L R+Y+QMP+P+YVI+MG+C
Sbjct: 61 ACLIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPDPKYVIAMGAC 120
Query: 130 ANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
GG + SYS VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ + +
Sbjct: 121 TITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQEQTAE 176
>gi|33864744|ref|NP_896303.1| NADH dehydrogenase subunit B [Synechococcus sp. WH 8102]
gi|81575356|sp|Q7U9P5|NDHK_SYNPX RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|33632267|emb|CAE06723.1| NADH dehydrogenase I chain B or NdhK [Synechococcus sp. WH 8102]
Length = 246
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 76/183 (41%), Positives = 116/183 (63%), Gaps = 4/183 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
LT+ + + S + A ++S+++ ++TS+D L WAR SL + +G
Sbjct: 4 LTSPSITAVRDLREASCGPIGAP--AVTSDLSE-NVILTSLDDLHNWARLSSLWPLLYGT 60
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACC +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+Y
Sbjct: 61 ACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKY 120
Query: 123 VISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 121 VIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKKVGDES 180
Query: 182 NVK 184
+
Sbjct: 181 LAE 183
>gi|319761763|ref|YP_004125700.1| NADH-quinone oxidoreductase, b subunit [Alicycliphilus
denitrificans BC]
gi|330826543|ref|YP_004389846.1| NADH-quinone oxidoreductase subunit B [Alicycliphilus denitrificans
K601]
gi|317116324|gb|ADU98812.1| NADH-quinone oxidoreductase, B subunit [Alicycliphilus
denitrificans BC]
gi|329311915|gb|AEB86330.1| NADH-quinone oxidoreductase, B subunit [Alicycliphilus
denitrificans K601]
Length = 159
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 114/154 (74%), Positives = 129/154 (83%), Gaps = 1/154 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+ +GF+ TS D +V WA+TGSL +TFGLACCAVEMM A+ RYDL RFG RAS
Sbjct: 3 EGVMKEGFVTTSYDAVVNWAKTGSLWPVTFGLACCAVEMMHAAAARYDLARFGAEVFRAS 62
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSD+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDR+
Sbjct: 63 PRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVD+YVPGCPPTAEALIYGI+ LQ+KIRR +
Sbjct: 123 VPVDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156
>gi|95928442|ref|ZP_01311190.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans
DSM 684]
gi|95135713|gb|EAT17364.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans
DSM 684]
Length = 179
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 79/147 (53%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
+ S+D++V W+R+ SL MTFGLACCA+EMM R+DL+R G RASPRQ+DV
Sbjct: 20 NNIMTASLDKVVNWSRSRSLWPMTFGLACCAIEMMATGAARFDLDRMGVLFRASPRQADV 79
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
+I+AGT+T+KM + VY+QMPEP+YVI+MG+CA+ GG + +YSV++G D+ +PVD+Y
Sbjct: 80 IIIAGTVTHKMLPVIETVYEQMPEPKYVIAMGACASSGGVF-DTYSVLQGIDQALPVDVY 138
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGN 182
+PGCPP E L+YG++ LQ+KI R N
Sbjct: 139 IPGCPPRPEGLLYGLMKLQEKIMRERN 165
>gi|154795251|ref|YP_001001538.2| NADH-plastoquinone oxidoreductase subunit K [Nuphar advena]
gi|218527955|sp|A1XFV9|NDHK_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SP
Sbjct: 10 DRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 69
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRI 149
RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++
Sbjct: 70 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 129
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 130 IPVDVYLPGCPPKPEAIIDAITKLRKKVSRE 160
>gi|197359657|gb|ACH69871.1| NADH-plastoquinone oxidoreductase subunit K [Aneura sp. Wickett
473]
Length = 231
Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 103/151 (68%), Gaps = 1/151 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ ++T+++ WAR SL + +G +CC +E R+D +R+G PR+SP
Sbjct: 10 DKTVTDSIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 69
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRI 149
RQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ VRG D++
Sbjct: 70 RQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKL 129
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+PVDIY+PGCPP EA+I ++ L+KKI R
Sbjct: 130 IPVDIYLPGCPPRPEAIIDAVIKLRKKIARE 160
>gi|14423817|sp|Q9MUR0|NDHK_MESVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|7259539|gb|AAF43840.1|AF166114_52 subunit K of NADH-ubiquinone oxidoreductase [Mesostigma viride]
Length = 247
Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 111/159 (69%), Gaps = 2/159 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+++ ++++ ++T+++ L WAR SL + +G +CC +E R+D +RFG P
Sbjct: 28 PQVTQNVSNQ-LILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLLGSRFDFDRFGLVP 86
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
R SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 87 RCSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 146
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVD+Y+PGCPP EA+I ++ L+KK+ + V+
Sbjct: 147 VDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQENLVE 185
>gi|290489704|gb|ADD31236.1| NADH-plastoquinone oxidoreductase subunit K protein [Antirrhinum
majus]
Length = 254
Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 36 PLLDRTAENSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 95
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 96 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 155
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 156 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 189
>gi|290489722|gb|ADD31245.1| NADH-plastoquinone oxidoreductase subunit K protein [Rhododendron
simsii]
Length = 225
Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ IT + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRITQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|123965561|ref|YP_001010642.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
9515]
gi|218527921|sp|A2BUS4|NDHK_PROM5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|123199927|gb|ABM71535.1| putative respiratory-chain NADH dehydrogenase subunit
[Prochlorococcus marinus str. MIT 9515]
Length = 244
Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+++++++ ++TS+D L WAR SL + +G ACC +E R+D +RFG P
Sbjct: 24 PQVTTDLSE-NIIMTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 82
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG
Sbjct: 83 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 142
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVD+Y+PGCPP EA+ ++ L+KK+ ++
Sbjct: 143 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181
>gi|290790852|gb|ADD63108.1| NADH-plastoquinone oxidoreductase subunit K [Microlaena stipoides]
Length = 253
Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats.
Identities = 72/181 (39%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M LT + K + + + + + + T+ + L W+R SL + +
Sbjct: 8 MVLTEYSDKKKKERKDSIETVMSLIEFPLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLY 67
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 68 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 127
Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 128 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLRKKIAR 187
Query: 180 V 180
Sbjct: 188 E 188
>gi|89895333|ref|YP_518820.1| NADH dehydrogenase I chain B [Desulfitobacterium hafniense Y51]
gi|219669767|ref|YP_002460202.1| NADH dehydrogenase subunit B [Desulfitobacterium hafniense DCB-2]
gi|122482325|sp|Q24UB6|NUOB_DESHY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065122|sp|B8FRK6|NUOB_DESHD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|89334781|dbj|BAE84376.1| NADH dehydrogenase I chain B [Desulfitobacterium hafniense Y51]
gi|219540027|gb|ACL21766.1| NADH-quinone oxidoreductase, B subunit [Desulfitobacterium
hafniense DCB-2]
Length = 173
Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats.
Identities = 86/156 (55%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88
+ + K L+TS+D+++ W R S +TFGLACCA+EMM A PR D+ RFG+ RA
Sbjct: 12 AEALMEKNVLLTSIDKVLNWGRGHSFWPVTFGLACCAIEMMAAGGPRVDISRFGYEVFRA 71
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPR +DVMIVAGT T KMA LR +YDQMPEP++VI+MGSCA+ GG + SYS++ G D+
Sbjct: 72 SPRHADVMIVAGTCTRKMAPLLRMIYDQMPEPKWVIAMGSCASAGGPFADSYSMLTGVDK 131
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
IVPVD+Y+PGCPP E+L+YG+L LQ K+ V+
Sbjct: 132 IVPVDVYIPGCPPRPESLVYGLLQLQHKVNHPDKVR 167
>gi|270308195|ref|YP_003330253.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. VS]
gi|270154087|gb|ACZ61925.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. VS]
Length = 200
Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats.
Identities = 84/183 (45%), Positives = 118/183 (64%), Gaps = 1/183 (0%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ +I + +S + + G +TSV++++ W+R SL + FGL
Sbjct: 17 IDQQEGGVIQSFRTEHTSPYPDPTDWLSGDESPPGVFITSVEKVLNWSRHYSLWPVMFGL 76
Query: 63 ACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
ACCA+EMM + R+DL RFG RASPRQ+D+MIVAGTLT KMA LRR+YDQMPEP+
Sbjct: 77 ACCAIEMMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLRRIYDQMPEPK 136
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+V++MG+C GG + SYSVV G + +VPVD+YVPGCPP EAL+ I+ + +KI +
Sbjct: 137 WVLAMGACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTR 196
Query: 182 NVK 184
+K
Sbjct: 197 IIK 199
>gi|332528752|ref|ZP_08404729.1| NADH dehydrogenase subunit B [Hylemonella gracilis ATCC 19624]
gi|332041818|gb|EGI78167.1| NADH dehydrogenase subunit B [Hylemonella gracilis ATCC 19624]
Length = 159
Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats.
Identities = 114/150 (76%), Positives = 128/150 (85%), Gaps = 1/150 (0%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQS 93
+GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYD+ RFG RASPRQS
Sbjct: 7 KEGFVTTSYDTVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIARFGSEVFRASPRQS 66
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
D+MIVAGTL NKMA ALR+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 67 DLMIVAGTLCNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 126
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+YVPGCPPTAEALIYGI+ LQ+K+RR +
Sbjct: 127 VYVPGCPPTAEALIYGIIQLQQKVRRTQTI 156
>gi|21228592|ref|NP_634514.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
gi|7649014|gb|AAF65732.1|AF228525_2 F420H2 dehydrogenase subunit FpoB [Methanosarcina mazei Go1]
gi|20907086|gb|AAM32186.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
Length = 184
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 77/182 (42%), Positives = 107/182 (58%), Gaps = 5/182 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLV-TSVDQLVTWARTGSLMWMT 59
MG V + + E+V + +S I FL T ++ W R SL +MT
Sbjct: 1 MG--EVKETKTNNSKENPEEEVPGVITTTTSAI--HNFLKKTKAQDIINWGRKNSLWFMT 56
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
+ CC VEM+ YD +RFG PR SPR +DVMI++G +T K AL+R++DQMP
Sbjct: 57 QPMGCCGVEMIATGCAHYDTDRFGIIPRNSPRHADVMIISGYVTKKYLPALKRLWDQMPA 116
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VI+MG CA GG ++ SYS V+ D I P+D+Y+PGCPP EALI G + LQ+KI+
Sbjct: 117 PKWVIAMGDCAISGGPFYESYSTVQNIDEIFPIDVYIPGCPPRPEALIQGFVELQEKIKA 176
Query: 180 VG 181
Sbjct: 177 RK 178
>gi|154795257|ref|YP_784477.2| NADH-plastoquinone oxidoreductase subunit K [Piper cenocladum]
gi|218527951|sp|Q06GQ6|NDHK_PIPCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 229
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQSSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA++ I L+KK+ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAILDAITKLRKKVSRE 160
>gi|108796798|ref|YP_636385.1| NADH dehydrogenase subunit K [Staurastrum punctulatum]
gi|122211808|sp|Q32RZ1|NDHK_STAPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|61393566|gb|AAX45707.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Staurastrum
punctulatum]
Length = 280
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 72/180 (40%), Positives = 114/180 (63%), Gaps = 5/180 (2%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKG----FLVTSVDQLVTWARTGSLMWMTFG 61
+N ++ +S E ++ + +S IT + ++T+ W R SL + +G
Sbjct: 3 INSELFRSSNSFQEEGFESVTNGLSFSITEENISDSVILTTFHDFTNWIRLSSLWPLLYG 62
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
+CC +E R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+
Sbjct: 63 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPK 122
Query: 122 YVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I ++ L+KK+ +
Sbjct: 123 YVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVGQE 182
>gi|290489720|gb|ADD31244.1| NADH-plastoquinone oxidoreductase subunit K protein [Nerium
oleander]
Length = 246
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 26 PLLNRTVQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 85
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 86 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 145
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 146 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 179
>gi|139390352|ref|YP_001122950.1| photosystem II G protein [Aethionema cordifolium]
gi|218527879|sp|A4QJB9|NDHK_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|134286145|dbj|BAF49774.1| photosystem II G protein [Aethionema cordifolium]
Length = 229
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|13518424|ref|NP_084784.1| NADH dehydrogenase subunit K [Lotus japonicus]
gi|18202728|sp|Q9BBT7|NDHK_LOTJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|13358965|dbj|BAB33182.1| photosystem II G protein [Lotus japonicus]
Length = 230
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLIDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP E+++ I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPESILDAITKLRKKISRE 160
>gi|902226|emb|CAA60290.1| ndhK [Zea mays]
Length = 248
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 28 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 88 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKIARE 181
>gi|12427|emb|CAA35482.1| unnamed protein product [Zea mays]
gi|552735|gb|AAA84484.1| PSII-G [Zea mays]
gi|48478677|gb|AAT44697.1| NADH dehydrogenase subunit K [Saccharum hybrid cultivar SP80-3280]
gi|49659516|dbj|BAD27297.1| NADH dehydrogenase 27kD subunit [Saccharum hybrid cultivar NCo 310]
gi|118201130|gb|ABK79500.1| NADH-plastoquinone oxidoreductase subunit K [Sorghum bicolor]
Length = 248
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 28 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 88 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKIARE 181
>gi|160900611|ref|YP_001566193.1| NADH dehydrogenase subunit B [Delftia acidovorans SPH-1]
gi|218527988|sp|A9BNB3|NUOB_DELAS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|160366195|gb|ABX37808.1| NADH-quinone oxidoreductase, B subunit [Delftia acidovorans SPH-1]
Length = 159
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 114/154 (74%), Positives = 129/154 (83%), Gaps = 1/154 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+ +GF+ TS D +V WA+TGSL MTFGLACCAVEMM A+ RYD+ RFG RAS
Sbjct: 3 EGVMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGSEVFRAS 62
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSD+MIVAGTL NKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 63 PRQSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVD+YVPGCPPTAEALIYGI+ LQ+KIRR +
Sbjct: 123 VPVDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156
>gi|254571403|ref|XP_002492811.1| hypothetical protein [Pichia pastoris GS115]
gi|238032609|emb|CAY70632.1| Hypothetical protein PAS_chr3_0585 [Pichia pastoris GS115]
gi|308152254|emb|CBI83546.1| NUKM (PSST) subunit of mitochondrial NADH:ubiquinone oxidoreductase
(complex I) [Pichia pastoris]
Length = 204
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 104/140 (74%), Positives = 117/140 (83%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+ T+ D++ WAR S MTFGLACCAVEMM S PRYD +R G RASPRQSD+MI
Sbjct: 52 YTFTTFDKMKNWARKSSFWPMTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMI 111
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGT+TNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP
Sbjct: 112 VAGTVTNKMAPALRQVYDQMPYPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 171
Query: 158 GCPPTAEALIYGILLLQKKI 177
GCPPT+EAL+YG+ LQKK+
Sbjct: 172 GCPPTSEALMYGVFQLQKKM 191
>gi|261879876|ref|ZP_06006303.1| NADH dehydrogenase I subunit B [Prevotella bergensis DSM 17361]
gi|270333469|gb|EFA44255.1| NADH dehydrogenase I subunit B [Prevotella bergensis DSM 17361]
Length = 262
Score = 218 bits (556), Expect = 3e-55, Method: Composition-based stats.
Identities = 74/164 (45%), Positives = 109/164 (66%), Gaps = 3/164 (1%)
Query: 21 KVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + RI+ E+ G ++ S+D + W R+ S +TFG +CC +E M RYD
Sbjct: 18 KDNDTLERIAKELNDGGANVVLGSLDAAINWGRSNSPWSLTFGTSCCGIEFMAIGCSRYD 77
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
+ RFG+ R SPRQ+D+++ AGT+TNKMA +R+YD+M EP+YV+++G C GG +
Sbjct: 78 MARFGWEVTRNSPRQADLIMCAGTITNKMAPVFKRLYDEMAEPKYVVAVGGCTISGGPFK 137
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
SY+VVRG +VPVD+Y+PGCPP E+LIYG++ LQ+KI+
Sbjct: 138 KSYNVVRGISELVPVDVYIPGCPPRPESLIYGMMQLQRKIKVEK 181
>gi|32399383|emb|CAD28725.1| photosystem II G protein [Calycanthus floridus var. glaucus]
Length = 248
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 74/175 (42%), Positives = 110/175 (62%), Gaps = 2/175 (1%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
NQ G+ S +F + T + T+++ L W+R SL + +G +CC
Sbjct: 10 NQNQKEGKDSIETVMNSTEFPLL-DRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCF 68
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
+E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M
Sbjct: 69 IEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 128
Query: 127 GSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
G+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 129 GACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 183
>gi|183217745|ref|YP_001837364.1| NADH dehydrogenase subunit K [Guizotia abyssinica]
gi|218527890|sp|B2LMJ7|NDHK_GUIAB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|179366260|gb|ACB86531.1| NADH dehydrogenase subunit K [Guizotia abyssinica]
Length = 225
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLFHRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160
>gi|218129269|ref|ZP_03458073.1| hypothetical protein BACEGG_00846 [Bacteroides eggerthii DSM 20697]
gi|317475241|ref|ZP_07934508.1| NADH-quinone oxidoreductase [Bacteroides eggerthii 1_2_48FAA]
gi|217988647|gb|EEC54967.1| hypothetical protein BACEGG_00846 [Bacteroides eggerthii DSM 20697]
gi|316908694|gb|EFV30381.1| NADH-quinone oxidoreductase [Bacteroides eggerthii 1_2_48FAA]
Length = 194
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 74/162 (45%), Positives = 106/162 (65%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D V W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NETLEKLVRELNAGGANVALGVLDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|154795236|ref|NP_039387.2| NADH dehydrogenase subunit K [Oryza sativa Japonica Group]
Length = 225
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQRSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160
>gi|11988|emb|CAA34000.1| unnamed protein product [Oryza sativa Japonica Group]
gi|226609|prf||1603356AF photosystem II G protein
Length = 246
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 28 PLLDQRSSNSVISTTLKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 88 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181
>gi|290790784|gb|ADD63041.1| NADH-plastoquinone oxidoreductase subunit K [Potamophila
parviflora]
Length = 253
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 35 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 94
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 95 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 154
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 155 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 188
>gi|218527961|sp|A8Y9H4|NDHK_LOLPR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160
>gi|159106868|ref|YP_001531287.1| NADH-plastoquinone oxidoreductase subunit K [Lolium perenne]
gi|158934402|emb|CAO85980.1| NADH-plastoquinone oxidoreductase subunit K [Lolium perenne]
Length = 246
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 28 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 88 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181
>gi|118430306|ref|YP_874740.1| NADH-plastoquinone oxidoreductase subunit K [Agrostis stolonifera]
gi|118201215|gb|ABK79584.1| NADH-plastoquinone oxidoreductase subunit K [Agrostis stolonifera]
Length = 245
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 27 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 86
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 87 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 146
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 147 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 180
>gi|14017576|ref|NP_114263.1| NADH dehydrogenase subunit K [Triticum aestivum]
gi|556460|gb|AAA84731.1| thylakoid membrane protein [Triticum aestivum]
gi|13928209|dbj|BAB47038.1| NADH dehydrogenase 27kDa subunit [Triticum aestivum]
Length = 245
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 27 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 86
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 87 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 146
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 147 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 180
>gi|295136907|ref|YP_003587739.1| NADH dehydrogenase subunit K [Lathyrus sativus]
gi|293338629|gb|ADE43601.1| NADH dehydrogenase subunit K [Lathyrus sativus]
Length = 225
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQKTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|80750929|dbj|BAE48005.1| NADH dehydrogenase 27kD subunit [Nicotiana tomentosiformis]
Length = 284
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 60 MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 120 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219
>gi|81176254|ref|YP_398333.1| NADH dehydrogenase subunit K [Lactuca sativa]
gi|122212029|sp|Q332X4|NDHK_LACSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|78675172|dbj|BAE47598.1| NAD(P)H-quinone oxidoreductase chain K [Lactuca sativa]
gi|88656987|gb|ABD47237.1| NADH-plastoquinone oxidoreductase subunit K [Lactuca sativa]
Length = 225
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLFDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160
>gi|317130743|ref|YP_004097025.1| NADH-quinone oxidoreductase subunit beta [Bacillus cellulosilyticus
DSM 2522]
gi|315475691|gb|ADU32294.1| NADH-quinone oxidoreductase, B subunit [Bacillus cellulosilyticus
DSM 2522]
Length = 175
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 91/149 (61%), Positives = 111/149 (74%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
E + T V+QL W+RT SL ++FGLACCA+EMM RYD +RFG RASPR
Sbjct: 18 EDIKRNVFFTKVEQLKAWSRTRSLWPLSFGLACCAIEMMGTGAARYDFDRFGVIFRASPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
SDVMIVAGT+T+KMA LR +YDQMPEP++VISMGSCA GG Y +YSVV G D++VP
Sbjct: 78 HSDVMIVAGTVTSKMAPVLRTLYDQMPEPKWVISMGSCATCGGPYKEAYSVVNGVDKVVP 137
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VD+YVPGCPPT AL+ G+ LL++KIRR
Sbjct: 138 VDVYVPGCPPTPPALLDGVDLLREKIRRE 166
>gi|325280124|ref|YP_004252666.1| NAD(P)H-quinone oxidoreductase subunit K [Odoribacter splanchnicus
DSM 20712]
gi|324311933|gb|ADY32486.1| NAD(P)H-quinone oxidoreductase subunit K [Odoribacter splanchnicus
DSM 20712]
Length = 201
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 77/147 (52%), Positives = 104/147 (70%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
+V +D L+ W R+ S+ +TF +CC +E M RYD RFGF RASPRQ+DV+
Sbjct: 30 IIVGCLDDLINWGRSNSVWPLTFATSCCGIEFMAVGAARYDFARFGFEVTRASPRQADVI 89
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGT+ KMA LRR+YDQM EP+YVI+MG CA GG + SY VV+G ++I+PVD+YV
Sbjct: 90 IVAGTIVYKMAPVLRRLYDQMAEPKYVIAMGGCAISGGPFKKSYHVVKGVNQILPVDVYV 149
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183
PGCPP E+L+YG++ LQ+KI+ +
Sbjct: 150 PGCPPRPESLLYGMMQLQRKIKVEKFL 176
>gi|218511714|sp|P06409|NDHK_TOBAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218527957|sp|Q3C1J8|NDHK_NICSY RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + T + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 1 MNSIQFPLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|284928645|ref|YP_003421167.1| NADH dehydrogenase subunit B [cyanobacterium UCYN-A]
gi|284809104|gb|ADB94809.1| NADH dehydrogenase subunit B [cyanobacterium UCYN-A]
Length = 247
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 110/179 (61%), Gaps = 4/179 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
LT I Q L + I+ +++ ++T+VD L WAR SL + +G
Sbjct: 5 LTPDLSTIEQSQKEKVLNPISP--GNITQDLSE-NIILTTVDDLHNWARLSSLWPLLYGT 61
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACC +E R+D +RFG PR SPRQ+D+++VAGT+T KMA AL R+Y++MP P+Y
Sbjct: 62 ACCFIEFAALIGSRFDFDRFGLVPRCSPRQADLLLVAGTVTMKMAPALVRLYEEMPSPKY 121
Query: 123 VISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 122 VIAMGACTITGGMFSRDSTTTVRGVDKLIPVDVYIPGCPPRPEAIFDAVIKLRKKVSNE 180
>gi|281190728|ref|YP_003330965.1| NADH dehydrogenase subunit K [Parthenium argentatum]
gi|269924841|gb|ACZ52714.1| NADH dehydrogenase subunit K [Parthenium argentatum]
Length = 225
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLFHRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160
>gi|148262416|ref|YP_001229122.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter
uraniireducens Rf4]
gi|218528048|sp|A5GCZ4|NUBCD_GEOUR RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
Full=NADH dehydrogenase I subunit B/C/D; AltName:
Full=NDH-1 subunit B/C/D
gi|146395916|gb|ABQ24549.1| NADH dehydrogenase subunit D / NADH dehydrogenase subunit B / NADH
dehydrogenase subunit C [Geobacter uraniireducens Rf4]
Length = 793
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 77/150 (51%), Positives = 107/150 (71%), Gaps = 2/150 (1%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88
H ++ ++D L+ W R SL M FGL+CC VEMM + RYD+ RFG R
Sbjct: 4 QDATPHNNVILANLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRG 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
+PR++D+M++AGT+ KMA ++ R+Y+QM EPR+VISMGSCAN GG Y YSVV+G ++
Sbjct: 64 TPREADLMVIAGTVFKKMAPSILRLYEQMAEPRWVISMGSCANSGGMY-DVYSVVQGVNQ 122
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
I+PVD+YVPGCPP EA + G++LLQ+KI+
Sbjct: 123 IIPVDVYVPGCPPRPEAFLQGLMLLQEKIK 152
>gi|139390156|ref|YP_001123729.1| NADH dehydrogenase subunit K [Lobularia maritima]
gi|218527911|sp|A4QLJ8|NDHK_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|134286933|dbj|BAF50553.1| photosystem II G protein [Lobularia maritima]
Length = 225
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|154795217|ref|NP_054940.3| NADH dehydrogenase subunit K [Spinacia oleracea]
gi|218512134|sp|Q9M3M0|NDHK_SPIOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 227
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ +I + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQIAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
ASPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 ASPRQADLILTAGTVTMKMAPSLLRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|139389646|ref|YP_001123203.1| photosystem II G protein [Arabis hirsuta]
gi|218527883|sp|A4QK22|NDHK_ARAHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|134286401|dbj|BAF50027.1| photosystem II G protein [Arabis hirsuta]
Length = 225
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|218527895|sp|Q49KZ4|NDHK_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLARTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|302928116|ref|XP_003054637.1| hypothetical protein NECHADRAFT_73438 [Nectria haematococca mpVI
77-13-4]
gi|256735578|gb|EEU48924.1| hypothetical protein NECHADRAFT_73438 [Nectria haematococca mpVI
77-13-4]
Length = 221
Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats.
Identities = 103/148 (69%), Positives = 122/148 (82%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
+ +T++D++ WAR GS +TFGLACC +EMM SMPRYD +R G RASPRQSDVM
Sbjct: 68 EYALTTLDKIAAWARNGSFWPLTFGLACCGIEMMHVSMPRYDQDRLGIIFRASPRQSDVM 127
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGT+TNKMA+A+R YDQMPEPR+VISMGSCANGGGYYHYSYSV+RG DRI+PVDIYV
Sbjct: 128 IVAGTVTNKMATAVRLCYDQMPEPRWVISMGSCANGGGYYHYSYSVLRGVDRILPVDIYV 187
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184
PGCPPTAEAL+YG+ LQ+KIR +
Sbjct: 188 PGCPPTAEALMYGVFQLQRKIRNTRQSR 215
>gi|154795238|ref|NP_777417.3| NADH dehydrogenase subunit K [Anthoceros formosae]
Length = 229
Score = 218 bits (555), Expect = 4e-55, Method: Composition-based stats.
Identities = 72/160 (45%), Positives = 107/160 (66%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ S + E T ++T+ + WAR SL + +G +CC +E R+D +R
Sbjct: 1 MNSMDSSLPDETTSDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 61 YGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVDIY+PGCPP EA+I I+ L+K + R
Sbjct: 121 STVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKGVARE 160
>gi|1709406|sp|P52766|NDHK_LUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|881443|gb|AAB86906.1| NADH-ubiquinone oxidoreductase subunit [Lupinus luteus]
Length = 226
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T++++L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLRDRTTQNSVISTTLNELSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI++G+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAIGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|156573611|gb|ABU85141.1| NADH-plastoquinone oxidoreductase subunit K [Yucca schidigera]
Length = 239
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 21 PLLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 80
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 81 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 140
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 141 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 174
>gi|112253755|gb|ABI14476.1| NADH-plastoquinone oxidoreductase subunit K [Piper cenocladum]
Length = 289
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 67 PLLDRTTQSSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA++ I L+KK+ R
Sbjct: 187 DKLIPVDVYLPGCPPKPEAILDAITKLRKKVSRE 220
>gi|94502495|ref|YP_588121.1| NADH dehydrogenase subunit K [Helianthus annuus]
gi|122179574|sp|Q1KXV5|NDHK_HELAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|88656899|gb|ABD47150.1| NADH-plastoquinone oxidoreductase subunit K [Helianthus annuus]
Length = 225
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLFHRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160
>gi|154795224|ref|YP_054635.2| NADH dehydrogenase subunit K [Saccharum officinarum]
gi|154795225|ref|YP_899411.2| NADH-plastoquinone oxidoreductase subunit K [Sorghum bicolor]
gi|154795226|ref|NP_043029.2| NADH dehydrogenase subunit K [Zea mays]
gi|154795254|ref|YP_024383.2| NADH dehydrogenase subunit K [Saccharum hybrid cultivar SP-80-3280]
gi|242057527|ref|XP_002457909.1| hypothetical protein SORBIDRAFT_03g020200 [Sorghum bicolor]
gi|218511709|sp|Q6L395|NDHK_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218511710|sp|Q6ENV9|NDHK_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218527954|sp|A1E9S8|NDHK_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|241929884|gb|EES03029.1| hypothetical protein SORBIDRAFT_03g020200 [Sorghum bicolor]
Length = 227
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKIARE 160
>gi|139389100|ref|YP_001123818.1| NADH dehydrogenase subunit K [Nasturtium officinale]
gi|218527914|sp|A4QLT7|NDHK_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|134287023|dbj|BAF50642.1| photosystem II G protein [Nasturtium officinale]
Length = 225
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|110598466|ref|ZP_01386737.1| NADH-quinone oxidoreductase, B subunit [Chlorobium ferrooxidans DSM
13031]
gi|110339916|gb|EAT58420.1| NADH-quinone oxidoreductase, B subunit [Chlorobium ferrooxidans DSM
13031]
Length = 189
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 90/154 (58%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ + IT LVTSVD ++ WAR S+ M FGLACCA+EMM + YDLERFG PR+
Sbjct: 4 LDAGITKHNVLVTSVDNVLNWARLSSIWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y + Y V++G D
Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
R++PVD+YVPGCPP EALI G++ +Q+ IR
Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKIQELIRMEQ 157
>gi|329962484|ref|ZP_08300484.1| putative NADH dehydrogenase I subunit B [Bacteroides fluxus YIT
12057]
gi|328530040|gb|EGF56928.1| putative NADH dehydrogenase I subunit B [Bacteroides fluxus YIT
12057]
Length = 196
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 74/162 (45%), Positives = 106/162 (65%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D V W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NETLEKLVRELNAGGANVALGVLDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEN 181
>gi|66876455|gb|AAY58009.1| NdhK [Dinetus truncatus]
Length = 224
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + + + T+ + L W+R SL + +G +CC +E R+D +R
Sbjct: 1 MNSIQFPLLDQRAKNSVISTTFNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|288928299|ref|ZP_06422146.1| NADH dehydrogenase I, B/C/D subunit [Prevotella sp. oral taxon 317
str. F0108]
gi|288331133|gb|EFC69717.1| NADH dehydrogenase I, B/C/D subunit [Prevotella sp. oral taxon 317
str. F0108]
Length = 207
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 78/184 (42%), Positives = 116/184 (63%), Gaps = 7/184 (3%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWM 58
M + + K I K + +I +E+ G +V S+DQ + W R+ SL +
Sbjct: 1 MEVKQPHIKSIPYAEF----KDNDTLEQIMNELHEGGVNVVVGSLDQAINWGRSNSLWSL 56
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
TF +CC +E M RYD RFGF R SPRQ+D+++ AGT+TNKMA ++R+YD+M
Sbjct: 57 TFATSCCGIEFMSVGCARYDFARFGFEVTRNSPRQADLIMCAGTITNKMAPVMKRLYDEM 116
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
+P+YVI++G CA GG + SY VVRG + IVPVD+++PGCPP EA++YG++ LQ+K+
Sbjct: 117 ADPKYVIAVGGCAISGGPFKSSYHVVRGIEEIVPVDVFIPGCPPRPEAILYGMMQLQRKV 176
Query: 178 RRVG 181
+
Sbjct: 177 KVEK 180
>gi|197359653|gb|ACH69868.1| NADH-plastoquinone oxidoreductase subunit K [Aneura sp. Shaw 702]
Length = 232
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 70/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
S + ++T+++ WAR SL + +G +CC +E R+D +R+G PR+S
Sbjct: 9 SDKTVTDSIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 68
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDR 148
PRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ VRG D+
Sbjct: 69 PRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDK 128
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
++PVDIY+PGCPP EA+I I+ L+K+I R
Sbjct: 129 LIPVDIYLPGCPPRPEAVIDAIIKLRKRIARE 160
>gi|116617112|ref|YP_817486.1| NADH-plastoquinone oxidoreductase subunit K [Coffea arabica]
gi|122153625|sp|A0A339|NDHK_COFAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|116242168|gb|ABJ89683.1| NADH-plastoquinone oxidoreductase subunit K [Coffea arabica]
Length = 229
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T+++ W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTAQNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|218511715|sp|P26304|NDHK_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160
>gi|126165911|ref|YP_358680.2| NADH dehydrogenase subunit K [Nicotiana sylvestris]
gi|126165916|ref|NP_054503.2| NADH dehydrogenase subunit K [Nicotiana tabacum]
Length = 247
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + T + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 23 MNSIQFPLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 83 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 143 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182
>gi|297837993|ref|XP_002886878.1| NADH dehydrogenase subunit K [Arabidopsis lyrata subsp. lyrata]
gi|297332719|gb|EFH63137.1| NADH dehydrogenase subunit K [Arabidopsis lyrata subsp. lyrata]
Length = 225
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T K + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRTTKKSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|290489726|gb|ADD31247.1| NADH-plastoquinone oxidoreductase subunit K protein [Bulnesia
arborea]
Length = 225
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTKNSVISTTLNDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVDIY+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDIYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|160891170|ref|ZP_02072173.1| hypothetical protein BACUNI_03617 [Bacteroides uniformis ATCC 8492]
gi|317481067|ref|ZP_07940146.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_1_36]
gi|156859391|gb|EDO52822.1| hypothetical protein BACUNI_03617 [Bacteroides uniformis ATCC 8492]
gi|316902780|gb|EFV24655.1| NADH-quinone oxidoreductase [Bacteroides sp. 4_1_36]
Length = 193
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 73/162 (45%), Positives = 106/162 (65%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D V W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NETLEKLVRELNAGGANVALGVLDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YV+++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVVAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|154795255|ref|NP_862758.2| NADH dehydrogenase subunit K [Calycanthus floridus var. glaucus]
gi|218527905|sp|Q7YJW8|NDHK_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
>gi|84682208|gb|ABC60462.1| NADH-plastoquinone oxidoreductase subunit K [Nuphar advena]
Length = 283
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SP
Sbjct: 68 DRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 127
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRI 149
RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++
Sbjct: 128 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 187
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 188 IPVDVYLPGCPPKPEAIIDAITKLRKKVSRE 218
>gi|194033153|ref|YP_002000491.1| NADH dehydrogenase subunit K [Brachypodium distachyon]
gi|193075561|gb|ACF08644.1| NADH dehydrogenase 27kDa subunit [Brachypodium distachyon]
Length = 245
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 27 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 86
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 87 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 146
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 147 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 180
>gi|262400780|gb|ACY66269.1| NADH dehydrogenase subunit K [Brassica napus]
Length = 225
Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|75248911|sp|Q8WI14|NDHK_PSINU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|18389468|dbj|BAB84220.1| NADH dehydrogenase 27kD subunit [Psilotum nudum]
Length = 207
Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
++ S +S T ++T+++ WAR SL + +G +CC +E R+D +R
Sbjct: 5 INPMESLVSKPNTSNSIILTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 64
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 65 YGLVPRSSPRQADLIITAGTVTMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSY 124
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVDIY+PGCPP EA+I ++ L+KK+ +
Sbjct: 125 STVRGVDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKVAQE 164
>gi|57234306|ref|YP_181649.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Dehalococcoides ethenogenes 195]
gi|123618656|sp|Q3Z800|NUOB_DEHE1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|57224754|gb|AAW39811.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Dehalococcoides ethenogenes 195]
Length = 200
Score = 217 bits (554), Expect = 5e-55, Method: Composition-based stats.
Identities = 86/177 (48%), Positives = 117/177 (66%), Gaps = 1/177 (0%)
Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
II + ++SE G VTSV++++ W+R SL + FGLACCA+E
Sbjct: 23 GIIQSFRTGHTTPYPDPADWLNSEEPPPGVFVTSVEKVLNWSRHYSLWPVMFGLACCAIE 82
Query: 69 MMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
MM + R+DL RFG RASPRQ+D+MIVAGTLT KMA L+R+YDQMPEP++V++MG
Sbjct: 83 MMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPKWVLAMG 142
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+C GG + SYSVV G + +VPVD+YVPGCPP EAL+ I+ + +KI + +K
Sbjct: 143 ACGTSGGLFRDSYSVVPGFNMVVPVDVYVPGCPPRPEALLRAIMDIHEKIDKTRIIK 199
>gi|242765656|ref|XP_002341019.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces
stipitatus ATCC 10500]
gi|218724215|gb|EED23632.1| NADH-ubiquinone oxidoreductase subunit B, putative [Talaromyces
stipitatus ATCC 10500]
Length = 247
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 117/207 (56%), Positives = 136/207 (65%), Gaps = 23/207 (11%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK--GFLVTSVDQLVTWARTGSLMWM 58
M + + ++ S + KV + S E + +T++DQ+ WAR SL M
Sbjct: 36 MPASAIERQSEPSSSLTASGKVRREVPLPSQEKKEGAMQYALTTLDQIANWARQSSLWPM 95
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 96 TFGLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMP 155
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC------------------- 159
+PR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC
Sbjct: 156 DPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCKFDILLMLKLSLILIERHL 215
Query: 160 --PPTAEALIYGILLLQKKIRRVGNVK 184
PPT+EAL+YGI LQKK+R +
Sbjct: 216 KGPPTSEALMYGIFQLQKKMRHTKITR 242
>gi|218527902|sp|Q8S8X1|NDHK_ATRBE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 1 MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|328353181|emb|CCA39579.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Pichia pastoris CBS
7435]
Length = 282
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 104/140 (74%), Positives = 117/140 (83%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+ T+ D++ WAR S MTFGLACCAVEMM S PRYD +R G RASPRQSD+MI
Sbjct: 130 YTFTTFDKMKNWARKSSFWPMTFGLACCAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMI 189
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGT+TNKMA ALR+VYDQMP PR+VISMGSCANGGGYYHYSYSVVRG DRIVPVDIYVP
Sbjct: 190 VAGTVTNKMAPALRQVYDQMPYPRWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDIYVP 249
Query: 158 GCPPTAEALIYGILLLQKKI 177
GCPPT+EAL+YG+ LQKK+
Sbjct: 250 GCPPTSEALMYGVFQLQKKM 269
>gi|139388098|ref|YP_001123290.1| photosystem II G protein [Barbarea verna]
gi|218527881|sp|A4QKA9|NDHK_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|134286489|dbj|BAF50114.1| photosystem II G protein [Barbarea verna]
Length = 225
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|123967853|ref|YP_001008711.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. AS9601]
gi|218527922|sp|A2BP93|NDHK_PROMS RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|123197963|gb|ABM69604.1| putative respiratory-chain NADH dehydrogenase subunit
[Prochlorococcus marinus str. AS9601]
Length = 244
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+++++++ ++TS+D L WAR SL + +G ACC +E R+D +RFG P
Sbjct: 24 PQVTTDLSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 82
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG
Sbjct: 83 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 142
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVD+Y+PGCPP EA+ ++ L+KK+ ++
Sbjct: 143 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGNESILE 181
>gi|52220814|ref|YP_086970.1| NADH dehydrogenase subunit K [Panax ginseng]
gi|75254105|sp|Q68S02|NDHK_PANGI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|51235317|gb|AAT98513.1| NADH dehydrogenase 32 kDa subunit [Panax ginseng]
Length = 225
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|34498210|ref|NP_902425.1| NADH dehydrogenase subunit B [Chromobacterium violaceum ATCC 12472]
gi|81655254|sp|Q7NUE5|NUOB2_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|34104063|gb|AAQ60423.1| NADH-ubiquinone oxidoreductase, chain B [Chromobacterium violaceum
ATCC 12472]
Length = 171
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 108/153 (70%), Positives = 132/153 (86%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
S + GFL+T++D L A++GSL +++FGLACCAVEMM A+ RYD++RFG+ PRA+
Sbjct: 3 SPSLEKDGFLLTTLDGLFGRAQSGSLWYLSFGLACCAVEMMHAAAARYDMDRFGWIPRAT 62
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAGTLTNKMA A+R+VYDQM EPRYV+SMGSCANGGGYYHYSY+VVRGCDRI
Sbjct: 63 PRQADLMIVAGTLTNKMAPAMRKVYDQMSEPRYVLSMGSCANGGGYYHYSYAVVRGCDRI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VPVD+YVPGCPPTAEAL+YG++ LQ KIRR
Sbjct: 123 VPVDVYVPGCPPTAEALLYGLMQLQAKIRRDDT 155
>gi|154795219|ref|YP_740121.2| NADH-plastoquinone oxidoreductase subunit K [Daucus carota]
gi|218527898|sp|Q0G9V8|NDHK_DAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|159902860|ref|YP_001550204.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
9211]
gi|218527920|sp|A9BDU0|NDHK_PROM4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|159888036|gb|ABX08250.1| putative respiratory-chain NADH dehydrogenase subunit
[Prochlorococcus marinus str. MIT 9211]
Length = 252
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 73/177 (41%), Positives = 112/177 (63%), Gaps = 4/177 (2%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+ + + V A +++E++ ++TS+D L WAR SL + +G ACC
Sbjct: 18 PSINAVRDIREATCGPVGAP--NVTNELSE-NIILTSLDDLHNWARLSSLWPLLYGTACC 74
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
+E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMP+P+YVI+
Sbjct: 75 FIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIA 134
Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 135 MGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGNES 191
>gi|260912210|ref|ZP_05918762.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295]
gi|260633644|gb|EEX51782.1| NADH dehydrogenase I [Prevotella sp. oral taxon 472 str. F0295]
Length = 207
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 78/184 (42%), Positives = 116/184 (63%), Gaps = 7/184 (3%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWM 58
M + + K I K + +I +E+ G +V S+DQ + W R+ SL +
Sbjct: 1 MEVKQPHIKSIPYAEF----KDNDTLEQIMNELHEGGVNVVVGSLDQAINWGRSNSLWSL 56
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
TF +CC +E M RYD RFGF R SPRQ+D+++ AGT+TNKMA ++R+YD+M
Sbjct: 57 TFATSCCGIEFMSVGCARYDFARFGFEVTRNSPRQADLIMCAGTITNKMAPVMKRLYDEM 116
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
+P+YVI++G CA GG + SY VVRG + IVPVD+++PGCPP EA++YG++ LQ+K+
Sbjct: 117 ADPKYVIAVGGCAISGGPFKSSYHVVRGIEEIVPVDVFIPGCPPRPEAILYGMMQLQRKV 176
Query: 178 RRVG 181
+
Sbjct: 177 KVEK 180
>gi|189346374|ref|YP_001942903.1| NADH dehydrogenase subunit B [Chlorobium limicola DSM 245]
gi|238055283|sp|B3EI94|NUOB_CHLL2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|189340521|gb|ACD89924.1| NADH-quinone oxidoreductase, B subunit [Chlorobium limicola DSM
245]
Length = 189
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 89/154 (57%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ + IT +VTSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+
Sbjct: 4 LDAGITKHNVVVTSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y + Y V++G D
Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
R++PVD+YVPGCPP E+LI G++ +Q+ IR
Sbjct: 124 RVIPVDVYVPGCPPRPESLIGGLMKVQELIRMEQ 157
>gi|218176248|ref|YP_002364505.1| NADH-plastoquinone oxidoreductase subunit K [Festuca arundinacea]
gi|215882332|gb|ACJ70762.1| NADH-plastoquinone oxidoreductase subunit K [Festuca arundinacea]
Length = 246
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 28 PLLDQNSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 88 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181
>gi|164597808|ref|NP_084666.2| NADH dehydrogenase subunit K [Oenothera elata subsp. hookeri]
gi|169142697|ref|YP_001687124.1| NADH dehydrogenase subunit K [Oenothera argillicola]
gi|169142847|ref|YP_001687270.1| NADH dehydrogenase subunit K [Oenothera glazioviana]
gi|169142932|ref|YP_001687354.1| NADH dehydrogenase subunit K [Oenothera biennis]
gi|169143018|ref|YP_001687438.1| NADH dehydrogenase subunit K [Oenothera parviflora]
gi|172045789|sp|Q9MTP4|NDHK_OENEH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218527924|sp|B0Z4L3|NDHK_OENAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218527925|sp|B0Z4U7|NDHK_OENBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218527926|sp|B0Z531|NDHK_OENGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218527927|sp|B0Z5B5|NDHK_OENPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|159792935|gb|ABW98691.1| NADH dehydrogenase subunit K [Oenothera argillicola]
gi|159793105|gb|ABW98859.1| NADH dehydrogenase subunit K [Oenothera biennis]
gi|159895459|gb|ABX10024.1| NADH dehydrogenase subunit K [Oenothera glazioviana]
gi|159895544|gb|ABX10108.1| NADH dehydrogenase subunit K [Oenothera parviflora]
gi|162423675|emb|CAB67131.2| NADH dehydrogenase subunit K [Oenothera elata subsp. hookeri]
Length = 225
Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+
Sbjct: 13 TQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPV 152
D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV
Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 132
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+Y+PGCPP EA+I I L+KKI R
Sbjct: 133 DVYLPGCPPKPEAIIDAITKLRKKISRE 160
>gi|7636113|emb|CAB88733.1| NADH dehydrogenase 32kDa subunit [Spinacia oleracea]
Length = 281
Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ +I + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 61 PLLDQIAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 120
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
ASPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 121 ASPRQADLILTAGTVTMKMAPSLLRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 180
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 181 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 214
>gi|57864900|gb|AAW57074.1| NADH dehydrogenase subunit K [cyanobacterium endosymbiont of
Rhopalodia gibba]
Length = 281
Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats.
Identities = 74/172 (43%), Positives = 111/172 (64%), Gaps = 4/172 (2%)
Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
I Q L + S+++ +++ ++T+VD L WAR SL + +G ACC +E
Sbjct: 43 IEQQQKEKILNPIAR--SQVTQDLSE-NVILTTVDDLHNWARLSSLWPLLYGTACCFIEF 99
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+YVI+MG+C
Sbjct: 100 AALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEQMPDPKYVIAMGAC 159
Query: 130 ANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
GG + S + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+
Sbjct: 160 TITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVSNE 211
>gi|126165891|ref|NP_783236.2| NADH dehydrogenase subunit K [Atropa belladonna]
Length = 247
Score = 217 bits (553), Expect = 6e-55, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 23 MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 83 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 143 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182
>gi|329957597|ref|ZP_08298072.1| putative NADH dehydrogenase I subunit B [Bacteroides clarus YIT
12056]
gi|328522474|gb|EGF49583.1| putative NADH dehydrogenase I subunit B [Bacteroides clarus YIT
12056]
Length = 195
Score = 217 bits (552), Expect = 6e-55, Method: Composition-based stats.
Identities = 74/162 (45%), Positives = 106/162 (65%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D V W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NETLEKLVWELNAGGANVALGVLDDFVNWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|218527903|sp|B3TN55|NDHK_BRADI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 217 bits (552), Expect = 6e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160
>gi|11837|emb|CAA77357.1| NADH dehydrogenase 27kD subunit [Nicotiana tabacum]
gi|77799566|dbj|BAE46655.1| NADH dehydrogenase 27kD subunit [Nicotiana sylvestris]
gi|225205|prf||1211235AK bhpB gene
Length = 284
Score = 217 bits (552), Expect = 6e-55, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + T + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 60 MNSIQFPLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 120 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219
>gi|139389422|ref|YP_001123119.1| NADH dehydrogenase subunit K [Olimarabidopsis pumila]
gi|218527928|sp|A4QJT7|NDHK_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|134286316|dbj|BAF49943.1| photosystem II G protein [Olimarabidopsis pumila]
Length = 225
Score = 217 bits (552), Expect = 6e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|302035990|ref|YP_003796312.1| NADH-quinone oxidoreductase subunit B [Candidatus Nitrospira
defluvii]
gi|300604054|emb|CBK40386.1| NADH-quinone oxidoreductase, subunit B [Candidatus Nitrospira
defluvii]
Length = 159
Score = 217 bits (552), Expect = 6e-55, Method: Composition-based stats.
Identities = 89/148 (60%), Positives = 112/148 (75%), Gaps = 2/148 (1%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93
L T++D V WAR SL MTFGLACCA+EM+ + RYD++RFG RASPRQS
Sbjct: 9 DANILTTNLDAFVGWARKSSLWPMTFGLACCAIEMIASVSSRYDIDRFGAGVFRASPRQS 68
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
D+MIVAGT++ KMA +RR+YDQM EPRYVISMGSCA G +Y+ SY+VV+G D+IVPVD
Sbjct: 69 DLMIVAGTVSRKMAPVIRRIYDQMAEPRYVISMGSCATSGNHYN-SYAVVQGVDQIVPVD 127
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVG 181
+Y+ GCPP EAL+ G+L LQ+KI+R
Sbjct: 128 VYIAGCPPRPEALLDGLLKLQEKIQREK 155
>gi|115391908|ref|YP_778496.1| NADH dehydrogenase subunit K [Jasminum nudiflorum]
gi|122164967|sp|Q06RC5|NDHK_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|110456229|gb|ABG74634.1| NADH dehydrogenase 32 kDa subunit [Jasminum nudiflorum]
gi|110456646|gb|ABG74765.1| NADH dehydrogenase 32 kDa subunit [Jasminum leratii]
gi|110456683|gb|ABG74792.1| NADH dehydrogenase 32 kDa subunit [Jasminum abyssinicum]
gi|110456715|gb|ABG74818.1| NADH dehydrogenase 32 kDa subunit [Jasminum subhumile]
Length = 213
Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTVQNSVFSTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|326200285|gb|ADZ52324.1| NADH dehydrogenase 32 kDa subunit [Asclepias syriaca]
Length = 227
Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLNRTIQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|284038505|ref|YP_003388435.1| NADH-quinone oxidoreductase subunit beta [Spirosoma linguale DSM
74]
gi|283817798|gb|ADB39636.1| NADH-quinone oxidoreductase, B subunit [Spirosoma linguale DSM 74]
Length = 176
Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 88/155 (56%), Positives = 111/155 (71%), Gaps = 1/155 (0%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+ + ++ + L+ W+R S+ M+FGLACCA+EMMQA YDLERFG P
Sbjct: 16 PSTTDKTGEASVIMMHSEDLLNWSREKSMWPMSFGLACCAIEMMQAFAASYDLERFGIFP 75
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
R SPRQSD+MIV+GT+T KMA +RR+Y+QM EPRYVISMGSC+N GG Y + Y VV+G
Sbjct: 76 RPSPRQSDIMIVSGTVTFKMADRIRRLYEQMAEPRYVISMGSCSNCGGPYWQHGYHVVKG 135
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
DRI+PVD+YVPGCPP EALI G + LQ+KIR
Sbjct: 136 VDRIIPVDVYVPGCPPRPEALIDGFIKLQEKIRTE 170
>gi|73748692|ref|YP_307931.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Dehalococcoides sp. CBDB1]
gi|289432718|ref|YP_003462591.1| NADH-quinone oxidoreductase subunit beta [Dehalococcoides sp. GT]
gi|123619736|sp|Q3ZXS0|NUOB_DEHSC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|73660408|emb|CAI83015.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Dehalococcoides sp. CBDB1]
gi|288946438|gb|ADC74135.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. GT]
Length = 200
Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 83/183 (45%), Positives = 117/183 (63%), Gaps = 1/183 (0%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ +I + ++ E G +TSV++++ W+R SL + FGL
Sbjct: 17 IDQQEGGVIQSFRTGHTSPYPDPADWLNGEEPPPGVFITSVEKVLNWSRHYSLWPVMFGL 76
Query: 63 ACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
ACCA+EMM + R+DL RFG RASPRQ+D+MIVAGTLT KMA L+R+YDQMPEP+
Sbjct: 77 ACCAIEMMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPK 136
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+V++MG+C GG + SYSVV G + +VPVD+YVPGCPP EAL+ I+ + +KI +
Sbjct: 137 WVLAMGACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTR 196
Query: 182 NVK 184
+K
Sbjct: 197 ILK 199
>gi|78211756|ref|YP_380535.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9605]
gi|123578940|sp|Q3AN52|NDHK_SYNSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|78196215|gb|ABB33980.1| NADH-quinone oxidoreductase, B subunit [Synechococcus sp. CC9605]
Length = 246
Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 74/183 (40%), Positives = 115/183 (62%), Gaps = 4/183 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
T+ + + S + A ++++++ ++TS+D L WAR SL + +G
Sbjct: 4 NTSPSIAAVRDLREASCSPIGAPT--VTNDLSE-NVILTSLDDLHNWARLSSLWPLLYGT 60
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACC +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+Y
Sbjct: 61 ACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKY 120
Query: 123 VISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 121 VIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGDES 180
Query: 182 NVK 184
+
Sbjct: 181 LAE 183
>gi|7525037|ref|NP_051063.1| NADH dehydrogenase subunit K [Arabidopsis thaliana]
gi|6685682|sp|P56756|NDHK_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|5881698|dbj|BAA84389.1| photosystem II G protein [Arabidopsis thaliana]
Length = 225
Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
I T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PILDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|167588033|ref|ZP_02380421.1| NADH dehydrogenase subunit B [Burkholderia ubonensis Bu]
Length = 167
Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 109/151 (72%), Positives = 128/151 (84%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ GF+VTS++ ++ ART SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR
Sbjct: 7 TLEKDGFVVTSLEAVMAAARTNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 66
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q D+MIV+GTLTNKMA A+R+VYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 67 QCDLMIVSGTLTNKMAPAMRKVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 126
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VD+YVPGCPPTAEALIYG++ LQ+KI
Sbjct: 127 VDVYVPGCPPTAEALIYGLMQLQRKIMEQST 157
>gi|323149086|ref|YP_004222650.1| NADH-plastoquinone oxidoreductase subunit K [Anthriscus cerefolium]
gi|289645579|gb|ADD13642.1| NADH-plastoquinone oxidoreductase subunit K [Anthriscus cerefolium]
Length = 225
Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|22711920|ref|NP_683807.1| NADH dehydrogenase subunit K [Chaetosphaeridium globosum]
gi|75272587|sp|Q8M9X9|NDHK_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|22416924|gb|AAM96524.1| subunit K of NADH-ubiquinone oxidoreductase [Chaetosphaeridium
globosum]
Length = 242
Score = 217 bits (552), Expect = 7e-55, Method: Composition-based stats.
Identities = 71/165 (43%), Positives = 108/165 (65%), Gaps = 2/165 (1%)
Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
K S E++ ++T+++ WAR SL + +G +CC +E R+D +
Sbjct: 22 KNPVKTSSDKEELS-NSIILTTLNDFSNWARLSSLWPLLYGTSCCFIEFAALIGSRFDFD 80
Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYS 139
R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + S
Sbjct: 81 RYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDS 140
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YS VRG D+++PVDIY+PGCPP EA+I ++ L+KK+ + +
Sbjct: 141 YSTVRGVDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKVGQETYFE 185
>gi|290489728|gb|ADD31248.1| NADH-plastoquinone oxidoreductase subunit K protein [Cornus
florida]
Length = 252
Score = 217 bits (552), Expect = 8e-55, Method: Composition-based stats.
Identities = 72/182 (39%), Positives = 112/182 (61%), Gaps = 2/182 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
+G+ + + + ++E V + T + T+ + L W+R SL +
Sbjct: 6 IGMVLAPEYSDNKKKKNTIEMVMNSIDFPLLDRTTPNSVISTTSNDLSNWSRLSSLWPLL 65
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
+G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE
Sbjct: 66 YGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 125
Query: 120 PRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
P+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI
Sbjct: 126 PKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIS 185
Query: 179 RV 180
+
Sbjct: 186 QE 187
>gi|139389954|ref|YP_001123554.1| photosystem II G protein [Draba nemorosa]
gi|218527888|sp|A4QL23|NDHK_DRANE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|134286756|dbj|BAF50378.1| photosystem II G protein [Draba nemorosa]
Length = 225
Score = 217 bits (552), Expect = 8e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPFLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|156586759|gb|ABU85211.1| NADH-plastoquinone oxidoreductase subunit K [Anethum graveolens]
Length = 225
Score = 217 bits (552), Expect = 8e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTISGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|218527906|sp|A1EA12|NDHK_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 217 bits (552), Expect = 8e-55, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTSSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160
>gi|295065732|ref|YP_003587672.1| NADH dehydrogenase subunit K [Anomochloa marantoidea]
gi|251765256|gb|ACT15410.1| NADH dehydrogenase subunit K [Anomochloa marantoidea]
Length = 222
Score = 217 bits (552), Expect = 8e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTTSNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 160
>gi|20068335|emb|CAC88048.1| NADH dehydrogenase 32kD subunit [Atropa belladonna]
Length = 284
Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 60 MNSIQFPLLDRTAQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 120 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219
>gi|33239776|ref|NP_874718.1| NADH dehydrogenase subunit B [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|81664982|sp|Q7VDP4|NDHK_PROMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|33237302|gb|AAP99370.1| NAD(P)H-quinone oxidoreductase subunit K [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 242
Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats.
Identities = 71/163 (43%), Positives = 109/163 (66%), Gaps = 2/163 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
++S+++ ++TS+D L WAR SL + +G ACC +E R+D +RF
Sbjct: 20 PVAAPAVTSDLSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRF 78
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYS 141
G PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMP+P+YVI+MG+C GG + S +
Sbjct: 79 GLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTT 138
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+ ++
Sbjct: 139 AVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGNESFLE 181
>gi|154795230|ref|YP_567080.2| NADH dehydrogenase subunit K [Vitis vinifera]
gi|218527949|sp|Q0ZJ16|NDHK_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|154813768|ref|NP_569633.2| NADH dehydrogenase subunit K [Psilotum nudum]
Length = 203
Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 108/160 (67%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
++ S +S T ++T+++ WAR SL + +G +CC +E R+D +R
Sbjct: 1 MNPMESLVSKPNTSNSIILTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 61 YGLVPRSSPRQADLIITAGTVTMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVDIY+PGCPP EA+I ++ L+KK+ +
Sbjct: 121 STVRGVDKLIPVDIYLPGCPPKPEAIIDAVIKLRKKVAQE 160
>gi|147917399|gb|ABQ52523.1| NADH-plastoquinone oxidoreductase subunit K [Illicium oligandrum]
Length = 283
Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 65 SLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 124
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 125 SSPRQADIILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 184
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 185 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKLSRE 218
>gi|330850634|ref|YP_004376515.1| NADH-plastoquinone oxidoreductase subunit K [Ptilidium
pulcherrimum]
gi|302024763|gb|ADK89609.1| NADH-plastoquinone oxidoreductase subunit K [Ptilidium
pulcherrimum]
Length = 250
Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 104/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+ + ++ ++T+ + WAR SL + +G +CC +E R+D +R
Sbjct: 23 ISDIEFSLFNKTVTDSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 82
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 83 YGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 142
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+ VRG D+++PVDIY+PGCPP EA+I I L+KKI +
Sbjct: 143 TTVRGVDKLIPVDIYLPGCPPKPEAIIDAITKLRKKIAQE 182
>gi|313199706|ref|YP_004021320.1| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao]
gi|309321270|gb|ADO64813.1| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao]
gi|328924787|gb|ADO64894.2| NADH-plastoquinone oxidoreductase subunit K [Theobroma cacao]
Length = 225
Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|253698814|ref|YP_003020003.1| trifunctional NADH dehydrogenase I subunit B/C/D [Geobacter sp.
M21]
gi|251773664|gb|ACT16245.1| NADH dehydrogenase I, D subunit [Geobacter sp. M21]
Length = 794
Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
S+ + + L S+D ++ W R SL M FGL+CC VEMM + RYD+ RFG
Sbjct: 1 MSQGDDDKIPENVLFASLDDMINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAE 60
Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R +PR+SD+M++AGT+ KMA ++ R+YDQM EP++VISMGSCAN GG Y YSVV+
Sbjct: 61 VLRGTPRESDLMVIAGTVFKKMAPSILRLYDQMAEPKWVISMGSCANSGGMY-DVYSVVQ 119
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G D+I+PVD+Y+PGCPP E+ + G++LLQ+KIR
Sbjct: 120 GVDQILPVDLYIPGCPPRPESFLEGLMLLQQKIRSEER 157
>gi|34481633|emb|CAD45111.1| photosystem II G protein [Amborella trichopoda]
Length = 283
Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 65 PLLDRTTPNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 124
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 125 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 184
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 185 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKVSRE 218
>gi|218527882|sp|A2T337|NDHK_ANGEV RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|110628308|gb|ABG79604.1| NADH-plastoquinone oxidoreductase subunit K [Angiopteris evecta]
Length = 250
Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats.
Identities = 71/181 (39%), Positives = 111/181 (61%), Gaps = 4/181 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M L + + I + +++ + + T+++ WAR SL + +
Sbjct: 1 MVLASNHSNIEIKSDIPLINSMESY---SLDKNMSNSIISTNLNDFSNWARLSSLWPLLY 57
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G +CC +E R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP
Sbjct: 58 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEP 117
Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I+ L+KK+ +
Sbjct: 118 KYVIAMGACTITGGMFSTDSYSTVRGIDKLIPVDVYLPGCPPKPEAIIDAIIKLRKKVAQ 177
Query: 180 V 180
Sbjct: 178 E 178
>gi|290489732|gb|ADD31250.1| NADH-plastoquinone oxidoreductase subunit K protein [Ficus sp.
Moore 315]
Length = 253
Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 35 PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 94
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 95 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 154
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 155 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 188
>gi|114804269|ref|YP_762265.1| NADH-plastoquinone oxidoreductase subunit K [Morus indica]
gi|78100321|gb|ABB20962.1| NADH-plastoquinone oxidoreductase subunit K [Morus indica]
Length = 282
Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 64 PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 123
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 124 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 183
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 184 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 217
>gi|156598694|gb|ABU85602.1| NADH-plastoquinone oxidoreductase subunit K [Scaevola aemula]
Length = 222
Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
T + T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+
Sbjct: 10 TQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 69
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPV 152
D+++ AGT+T KM +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV
Sbjct: 70 DLILTAGTVTMKMGPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPV 129
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+Y+PGCPP EA+I I L+KKI R
Sbjct: 130 DVYLPGCPPKPEAVIDAITKLRKKISRE 157
>gi|11466706|ref|NP_039302.1| NADH dehydrogenase subunit K [Marchantia polymorpha]
gi|131322|sp|P06410|NDHK_MARPO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|11676|emb|CAA28088.1| psbG [Marchantia polymorpha]
Length = 243
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/155 (45%), Positives = 104/155 (67%), Gaps = 1/155 (0%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
S ++ ++T+ + WAR SL + +G +CC +E R+D +R+G P
Sbjct: 28 SSFINKTLTNSIILTTFNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVP 87
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ VRG
Sbjct: 88 RSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRG 147
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVDIY+PGCPP EA+I I+ L+KKI +
Sbjct: 148 VDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKIAQE 182
>gi|154795561|ref|NP_038400.2| NADH dehydrogenase subunit K [Mesostigma viride]
Length = 223
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 111/159 (69%), Gaps = 2/159 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+++ ++++ ++T+++ L WAR SL + +G +CC +E R+D +RFG P
Sbjct: 4 PQVTQNVSNQ-LILTTLNDLYNWARLSSLWPLLYGTSCCFIEFACLLGSRFDFDRFGLVP 62
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
R SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 63 RCSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 122
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVD+Y+PGCPP EA+I ++ L+KK+ + V+
Sbjct: 123 VDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQENLVE 161
>gi|154795227|ref|NP_904103.3| NADH dehydrogenase subunit K [Amborella trichopoda]
gi|218527907|sp|Q70XZ9|NDHK_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTPNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKVSRE 160
>gi|290489706|gb|ADD31237.1| NADH-plastoquinone oxidoreductase subunit K protein [Aucuba
japonica]
Length = 254
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 36 PLLDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 95
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 96 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 155
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 156 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 189
>gi|156598395|gb|ABU85457.1| NADH-plastoquinone oxidoreductase subunit K [Musa acuminata]
Length = 284
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 74/182 (40%), Positives = 111/182 (60%), Gaps = 2/182 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
M LT + + +E V + + + T+++ L W+R SL +
Sbjct: 38 MVLTEYSDNQNKNEGKDYIETVMNLIEFPLVDKTITNSVISTTLNDLSNWSRLSSLWPLL 97
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
+G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE
Sbjct: 98 YGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 157
Query: 120 PRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
P+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI
Sbjct: 158 PKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIS 217
Query: 179 RV 180
R
Sbjct: 218 RE 219
>gi|91208905|ref|YP_538939.1| NADH dehydrogenase subunit K [Gossypium hirsutum]
gi|119368503|ref|YP_913191.1| NADH dehydrogenase 27kD subunit [Gossypium barbadense]
gi|325210934|ref|YP_004286008.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium thurberi]
gi|122201392|sp|Q2L909|NDHK_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218527889|sp|A0ZZ39|NDHK_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|85687419|gb|ABC73631.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium hirsutum]
gi|119224865|dbj|BAF41251.1| NADH dehydrogenase 27kD subunit [Gossypium barbadense]
gi|290775796|gb|ADD62292.1| NADH-plastoquinone oxidoreductase subunit K [Gossypium thurberi]
Length = 225
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|194132108|gb|ACF33362.1| NADH-plastoquinone oxidoreductase subunit K [Gonystylus bancanus]
Length = 229
Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ TH + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRRTHNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|298674246|ref|YP_003725996.1| NADH-quinone oxidoreductase subunit B [Methanohalobium evestigatum
Z-7303]
gi|298287234|gb|ADI73200.1| NADH-quinone oxidoreductase, B subunit [Methanohalobium evestigatum
Z-7303]
Length = 189
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 78/179 (43%), Positives = 102/179 (56%), Gaps = 4/179 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
T N + V S SE K T V ++ W R SL +MT +
Sbjct: 6 NTNTNNDAGKPSGELEIPGVITTNSNAISEFLKK----TKVQDIINWGRKNSLWFMTQPM 61
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
CC VEM+ YD +RFG PR SPRQ+DVMI++G +T K AL++VY+QMP P++
Sbjct: 62 GCCGVEMIATGCAHYDTDRFGIIPRNSPRQADVMIISGYVTKKYFPALKKVYEQMPSPKW 121
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VI+MG CA GG ++ SYS V+ D I P+D+Y+PGCPP EALI G + LQKKI
Sbjct: 122 VIAMGDCAISGGPFYESYSTVQNIDEIFPIDVYIPGCPPRPEALIQGFVELQKKITAKK 180
>gi|139387256|ref|YP_001123377.1| NADH dehydrogenase subunit K [Capsella bursa-pastoris]
gi|218527884|sp|A4QKJ6|NDHK_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|134286577|dbj|BAF50201.1| photosystem II G protein [Capsella bursa-pastoris]
Length = 225
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWTRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|218512132|sp|Q2MI96|NDHK_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218512133|sp|Q2VEH3|NDHK_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218527953|sp|Q2MII3|NDHK_SOLBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 1 MNSIQFPLLDRTAPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQSD+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 61 YGLVPRSSPRQSDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|20090355|ref|NP_616430.1| F(420)H(2) dehydrogenase, subunit FpoB [Methanosarcina acetivorans
C2A]
gi|19915360|gb|AAM04910.1| F(420)H(2) dehydrogenase, subunit FpoB [Methanosarcina acetivorans
C2A]
Length = 184
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 72/182 (39%), Positives = 109/182 (59%), Gaps = 5/182 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLV-TSVDQLVTWARTGSLMWMT 59
MG V + + + E++ + ++ I+ FL T L+ W R SL +MT
Sbjct: 1 MG--EVKETKTNNTTGTPEEEIPGVITTTTNAISD--FLKKTKAQDLINWGRKNSLWFMT 56
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
+ CC VEM+ YD +RFG PR SPR +DVMI++G +T K AL+R+++QMP
Sbjct: 57 QPMGCCGVEMIATGCAHYDTDRFGIIPRNSPRHADVMIISGYVTKKYLPALKRLWEQMPA 116
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VI+MG C+ GG ++ SYS V+ D + P+D+++PGCPP EALI G + LQ+KI+
Sbjct: 117 PKWVIAMGDCSISGGPFYESYSTVQNIDELFPIDVFIPGCPPRPEALIQGFVELQEKIKA 176
Query: 180 VG 181
Sbjct: 177 KK 178
>gi|91701654|gb|ABE47538.1| NADH-plastoquinone oxidoreductase subunit K [Vitis vinifera]
gi|147769052|emb|CAN63542.1| hypothetical protein VITISV_025533 [Vitis vinifera]
Length = 283
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 73/181 (40%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M L G+ + +++ + T + T+ + L W+R SL + +
Sbjct: 38 MVLAPEYSDNKKGKKNNIETVMNSIEFPLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLY 97
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 98 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 157
Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 158 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISR 217
Query: 180 V 180
Sbjct: 218 E 218
>gi|113200912|gb|ABI32428.1| NADH-plastoquinone oxidoreductase subunit K [Daucus carota]
Length = 283
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 72/181 (39%), Positives = 110/181 (60%), Gaps = 1/181 (0%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M L + + + +++ + T + T+ + L W+R SL + +
Sbjct: 38 MVLASKHSDNKKKKKKNIETVMNSIEFPLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLY 97
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 98 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 157
Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 158 KYVIAMGACTISGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISR 217
Query: 180 V 180
Sbjct: 218 E 218
>gi|242910158|ref|YP_002970648.1| NADH-plastoquinone oxidoreductase subunit K [Alsophila spinulosa]
gi|218454827|gb|ACK77164.1| NADH-plastoquinone oxidoreductase subunit K [Alsophila spinulosa]
Length = 251
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 67/176 (38%), Positives = 110/176 (62%), Gaps = 4/176 (2%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
++ + + + + +++ F L+ +++ W+R SL + +G +CC
Sbjct: 12 SKSRVDPRENIFINSIESMF---PDRGASNSILLANINDFSNWSRLSSLWPLLYGTSCCF 68
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
+E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M
Sbjct: 69 IEFASLIGSRFDFDRYGLVPRSSPRQADLIVTAGTITMKMAPSLVRLYEQMPEPKYVIAM 128
Query: 127 GSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
G+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I + L+KK+ R
Sbjct: 129 GACTITGGMFSTDSYSTVRGVDKLIPVDLYLPGCPPKPEAIIDAVTKLRKKMAREN 184
>gi|122893994|ref|YP_001004190.1| NADH-plastoquinone oxidoreductase subunit K [Ranunculus macranthus]
gi|218527923|sp|A1XGP2|NDHK_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|85540808|gb|ABC70760.1| NADH-plastoquinone oxidoreductase subunit K [Ranunculus macranthus]
Length = 227
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ ++ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLNQTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
>gi|154795253|ref|YP_001294274.2| NADH-plastoquinone oxidoreductase subunit K [Illicium oligandrum]
gi|218527944|sp|A6MMU8|NDHK_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 SLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADIILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKLSRE 160
>gi|89900287|ref|YP_522758.1| NADH dehydrogenase subunit B [Rhodoferax ferrireducens T118]
gi|122479525|sp|Q21YC6|NUOB_RHOFD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|89345024|gb|ABD69227.1| NADH-quinone oxidoreductase, B subunit [Rhodoferax ferrireducens
T118]
Length = 159
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 111/154 (72%), Positives = 126/154 (81%), Gaps = 1/154 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
I +GF+ TS D ++ WA+TGSL M+FGLACCAVEMM A+ RYD+ RFG RAS
Sbjct: 3 EGILKEGFITTSYDSVMNWAKTGSLWPMSFGLACCAVEMMHAANARYDISRFGAEVFRAS 62
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSD++IVAGTL NKMA A R+VYDQM EPR VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 63 PRQSDLIIVAGTLCNKMAPAFRKVYDQMSEPRRVISMGSCANGGGYYHYSYSVVRGCDRI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVD+YVPGCPPTAEAL+YGI+ LQ KIRR +
Sbjct: 123 VPVDVYVPGCPPTAEALLYGIIQLQHKIRRTQTI 156
>gi|290489712|gb|ADD31240.1| NADH-plastoquinone oxidoreductase subunit K protein [Ilex cornuta]
Length = 225
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + T + T+ + L W+R SL + +G +CC +E R+D +R
Sbjct: 1 MNSIQFPLLERTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 60
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 61 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 120
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 121 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|197131364|gb|ACH47200.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium
cotyledonis]
Length = 227
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRRTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|218527959|sp|Q09X13|NDHK_MORIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 226
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 8 PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 67
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 68 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 127
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 128 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 161
>gi|290489734|gb|ADD31251.1| NADH-plastoquinone oxidoreductase subunit K protein [Gunnera
manicata]
Length = 283
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 65 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 124
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 125 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 184
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 185 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 218
>gi|290988400|ref|XP_002676909.1| predicted protein [Naegleria gruberi]
gi|284090514|gb|EFC44165.1| predicted protein [Naegleria gruberi]
Length = 186
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 98/143 (68%), Positives = 116/143 (81%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
+L V L WAR S+ +TFGLACCAVEMM + RYDLER+G R +PRQSD M
Sbjct: 6 EYLKAPVHDLFAWARISSMWPVTFGLACCAVEMMHVAAARYDLERYGIFFRPTPRQSDAM 65
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
I+AGTLTNKMA ALR+V+DQM EPRY +SMGSCANGGGYYH+SY VVRG D+I+PVD+YV
Sbjct: 66 IIAGTLTNKMAPALRKVWDQMAEPRYSVSMGSCANGGGYYHFSYHVVRGADQIIPVDVYV 125
Query: 157 PGCPPTAEALIYGILLLQKKIRR 179
PGCPPTAEAL+YG+ +LQKKI+R
Sbjct: 126 PGCPPTAEALLYGVYMLQKKIKR 148
>gi|66876449|gb|AAY58005.1| NdhK [Evolvulus glomeratus]
Length = 228
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 69/146 (47%), Positives = 101/146 (69%), Gaps = 1/146 (0%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
+ T+++ L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+
Sbjct: 22 NSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADL 81
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDI 154
++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+
Sbjct: 82 ILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDV 141
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRV 180
Y+PGCPP EA+I I L+KKI R
Sbjct: 142 YLPGCPPKPEAVIDAITKLRKKISRE 167
>gi|108802647|ref|YP_636303.1| NADH dehydrogenase subunit K [Eucalyptus globulus subsp. globulus]
gi|60460813|gb|AAX21033.1| NADH-plastoquinone oxidoreductase subunit K [Eucalyptus globulus
subsp. globulus]
Length = 284
Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 66 PLLARTTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 125
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 219
>gi|145612789|ref|XP_360493.2| hypothetical protein MGG_10805 [Magnaporthe oryzae 70-15]
gi|145019908|gb|EDK04136.1| hypothetical protein MGG_10805 [Magnaporthe oryzae 70-15]
Length = 147
Score = 216 bits (549), Expect = 1e-54, Method: Composition-based stats.
Identities = 100/142 (70%), Positives = 121/142 (85%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+D+L+ WAR GS+ +TF LACC +EMM SMPRYD +R G RASPRQ+DVMIVAGT+
Sbjct: 1 MDRLLAWARNGSMWPLTFALACCGIEMMHLSMPRYDQDRLGIIFRASPRQADVMIVAGTV 60
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
TNKMA A+R+ YDQMP+P++VISMG+CANGGGYYHYSYSVVRG DRI+PVDIYVPGCPPT
Sbjct: 61 TNKMAPAVRQCYDQMPDPKWVISMGTCANGGGYYHYSYSVVRGVDRILPVDIYVPGCPPT 120
Query: 163 AEALIYGILLLQKKIRRVGNVK 184
AEAL+YG+L LQKKI++ +
Sbjct: 121 AEALMYGLLQLQKKIQKTKVTR 142
>gi|126657571|ref|ZP_01728727.1| NADH dehydrogenase subunit B [Cyanothece sp. CCY0110]
gi|126621275|gb|EAZ91988.1| NADH dehydrogenase subunit B [Cyanothece sp. CCY0110]
Length = 247
Score = 216 bits (549), Expect = 1e-54, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 107/159 (67%), Gaps = 2/159 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
A +++ +++ ++T+VD L WAR SL + +G ACC +E R+D +RF
Sbjct: 23 PAARGQVTQDLSE-NIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRF 81
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYS 141
G PR+SPRQ+D++I AGT+T KMA AL R+Y++MP+P+YVI+MG+C GG + S +
Sbjct: 82 GLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPDPKYVIAMGACTITGGMFSSDSTT 141
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+
Sbjct: 142 AVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVSNE 180
>gi|284054939|ref|ZP_06385149.1| NADH dehydrogenase subunit B [Arthrospira platensis str. Paraca]
gi|291566379|dbj|BAI88651.1| NADH dehydrogenase subunit K [Arthrospira platensis NIES-39]
Length = 241
Score = 216 bits (549), Expect = 1e-54, Method: Composition-based stats.
Identities = 74/179 (41%), Positives = 110/179 (61%), Gaps = 12/179 (6%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
+ N II+ +++ E++ ++T+VD L WAR SL + +G A
Sbjct: 6 PSPNTTIINPMER----------PQVTQELSE-NVILTTVDDLYNWARLSSLWPLLYGTA 54
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CC +E R+D +RFG PR+SPRQ+D++I AGT+T K + L R+Y+QMPEP+YV
Sbjct: 55 CCFIEFAGLIGSRFDFDRFGLVPRSSPRQADLLITAGTITMKYSPMLVRLYEQMPEPKYV 114
Query: 124 ISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
I+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI
Sbjct: 115 IAMGACTVTGGMFSMDSTTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKIANES 173
>gi|305666195|ref|YP_003862482.1| NADH-quinone oxidoreductase chain B [Maribacter sp. HTCC2170]
gi|88707694|gb|EAQ99935.1| NADH-quinone oxidoreductase chain B [Maribacter sp. HTCC2170]
Length = 185
Score = 216 bits (549), Expect = 1e-54, Method: Composition-based stats.
Identities = 85/166 (51%), Positives = 116/166 (69%), Gaps = 3/166 (1%)
Query: 20 EKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
++ DF ++ +VTS+D+++ W R+ SL + FG +CCA+EMMQ R+D
Sbjct: 6 PEIPEDFPGKVIPAGNGANVIVTSLDKIINWGRSNSLWSLYFGTSCCAIEMMQTGAARHD 65
Query: 79 LERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFGF R SPRQ+D++I+AGT+ NKMA LRR+YDQM EPRYVI+MG+CA GG +
Sbjct: 66 YSRFGFEVARPSPRQADLIIIAGTIVNKMAPVLRRLYDQMAEPRYVIAMGACAISGGPFF 125
Query: 138 YS-YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
Y+ YSVV+G D ++PVD+YVPGCPP EAL+ G+L+LQ KIR
Sbjct: 126 YNTYSVVKGADHVIPVDVYVPGCPPRPEALLEGMLMLQDKIRTESM 171
>gi|290489746|gb|ADD31257.1| NADH-plastoquinone oxidoreductase subunit K protein [Staphylea
colchica]
Length = 226
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLERTAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|139388914|ref|YP_001123641.1| NADH dehydrogenase subunit K [Lepidium virginicum]
gi|218527910|sp|A4QLB0|NDHK_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|134286844|dbj|BAF50465.1| photosystem II G protein [Lepidium virginicum]
Length = 225
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRTTTNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|119356790|ref|YP_911434.1| NADH-quinone oxidoreductase, B subunit [Chlorobium phaeobacteroides
DSM 266]
gi|238055286|sp|A1BF33|NUOB_CHLPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|119354139|gb|ABL65010.1| NADH dehydrogenase subunit B [Chlorobium phaeobacteroides DSM 266]
Length = 189
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 88/154 (57%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ + IT L+TSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+
Sbjct: 4 LDAGITKHNVLITSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
SPRQSD+M+VAGT++ KMA + R+Y+QMPEPRYV+SMGSC+N GG Y + Y V++G D
Sbjct: 64 SPRQSDLMLVAGTVSMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
RI+PVD+YVPGCPP E+LI G++ +Q+ IR
Sbjct: 124 RIIPVDVYVPGCPPRPESLIGGLMKVQELIRMEQ 157
>gi|154795256|ref|YP_784390.2| NADH-plastoquinone oxidoreductase subunit K [Drimys granadensis]
gi|218527894|sp|Q06GZ3|NDHK_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 227
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
>gi|154795216|ref|YP_740206.2| NADH-plastoquinone oxidoreductase subunit K [Liriodendron
tulipifera]
gi|218527962|sp|Q0G9L5|NDHK_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
>gi|221068611|ref|ZP_03544716.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni
KF-1]
gi|264677199|ref|YP_003277105.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni
CNB-2]
gi|299530743|ref|ZP_07044158.1| NADH dehydrogenase subunit B [Comamonas testosteroni S44]
gi|220713634|gb|EED69002.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni
KF-1]
gi|262207711|gb|ACY31809.1| NADH-quinone oxidoreductase, B subunit [Comamonas testosteroni
CNB-2]
gi|298721259|gb|EFI62201.1| NADH dehydrogenase subunit B [Comamonas testosteroni S44]
Length = 159
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 112/154 (72%), Positives = 128/154 (83%), Gaps = 1/154 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+ +GF+ TS D +V WA+TGS+ MTFGLACCAVEMM A+ RYD+ RFG RAS
Sbjct: 3 EGVMKEGFVTTSYDTVVNWAKTGSIWPMTFGLACCAVEMMHAAAARYDIGRFGSEVFRAS 62
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PR SD+MIVAGTL NKMA A+R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 63 PRHSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVD+YVPGCPPTAEALIYGI+ LQ+KIRR +
Sbjct: 123 VPVDVYVPGCPPTAEALIYGIIQLQQKIRRTHTI 156
>gi|56750378|ref|YP_171079.1| NADH dehydrogenase subunit B [Synechococcus elongatus PCC 6301]
gi|81299990|ref|YP_400198.1| NADH dehydrogenase subunit B [Synechococcus elongatus PCC 7942]
gi|81596704|sp|Q5N560|NDHK_SYNP6 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|123556951|sp|Q31P08|NDHK_SYNE7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|56685337|dbj|BAD78559.1| NADH dehydrogenase subunit NdhK [Synechococcus elongatus PCC 6301]
gi|81168871|gb|ABB57211.1| NADH-quinone oxidoreductase, B subunit [Synechococcus elongatus PCC
7942]
Length = 235
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
A I+ ++ ++T++D L WAR SL + +G ACC +E R+D +RF
Sbjct: 12 PAAPPEITQGLSE-NVILTTLDDLYNWARLSSLWPLMYGTACCFIEFAALIGSRFDFDRF 70
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYS 141
G PR SPRQ+D++I AGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S +
Sbjct: 71 GLVPRCSPRQADLLITAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTT 130
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VRG D+++PVD+Y+PGCPP EA+I I+ L+KK+
Sbjct: 131 TVRGVDKLLPVDVYIPGCPPRPEAIIDAIVKLRKKVAN 168
>gi|154795222|ref|YP_319769.3| NADH dehydrogenase subunit K [Acorus calamus]
gi|161622314|ref|YP_001586186.1| NADH dehydrogenase subunit K [Acorus americanus]
gi|218527878|sp|A9LYA5|NDHK_ACOAM RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|218527908|sp|Q3V530|NDHK_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|160369857|gb|ABX38748.1| NADH-plastoquinone oxidoreductase subunit K [Acorus americanus]
Length = 239
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKLSRE 160
>gi|320353962|ref|YP_004195301.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
gi|320122464|gb|ADW18010.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
Length = 173
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 84/145 (57%), Positives = 108/145 (74%), Gaps = 1/145 (0%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
++ +++LV W R GS+ +TFGLACCA+EMM A DL+RFG RASPRQ+D M
Sbjct: 23 NAILGPLNKLVNWGRAGSIWPVTFGLACCAIEMMDAGASTNDLDRFGILFRASPRQADCM 82
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
+VAGTL+ KMA LRRVYDQMPEPRYV++MGSCA GG + +Y+V +G D+I+PVD+YV
Sbjct: 83 VVAGTLSKKMAPVLRRVYDQMPEPRYVLAMGSCACSGGVF-DTYAVTQGVDQIIPVDVYV 141
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPP EAL+ G L LQ+KI +
Sbjct: 142 PGCPPRPEALLEGFLKLQEKILKEQ 166
>gi|114329660|ref|YP_740479.1| NADH-plastoquinone oxidoreductase subunit K [Citrus sinensis]
gi|122166179|sp|Q09MH4|NDHK_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|113952626|gb|ABI49024.1| NADH-plastoquinone oxidoreductase subunit K [Citrus sinensis]
Length = 227
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T F+ T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 SLLDRTTPNSFISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|312886635|ref|ZP_07746242.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603]
gi|311300737|gb|EFQ77799.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603]
Length = 166
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 87/150 (58%), Positives = 112/150 (74%), Gaps = 1/150 (0%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
G +VT +D L+ W+R SL ++FG+ACCA+EMM + YDL+RFG PR S RQ+DV
Sbjct: 10 GGIIVTKLDDLMNWSRLSSLWPLSFGIACCAIEMMGSMASTYDLDRFGVFPRPSARQADV 69
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDI 154
+I+AGT+T KMA ++R+Y+QMPEP+YVISMGSC+N GG Y + Y VV+G DRI+PVDI
Sbjct: 70 IIIAGTVTFKMAERIKRLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVDRIIPVDI 129
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YV GCPP EALI GIL LQKKI ++
Sbjct: 130 YVQGCPPRPEALIGGILELQKKIEGEHLMR 159
>gi|15606518|ref|NP_213898.1| NADH dehydrogenase I chain B [Aquifex aeolicus VF5]
gi|6647653|sp|O67334|NUOB_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|2983736|gb|AAC07297.1| NADH dehydrogenase I chain B [Aquifex aeolicus VF5]
Length = 179
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 83/153 (54%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
I GF+ T+V++L+ W R SL +T GLACCA+EMM + R+DL+R G RASPR
Sbjct: 3 AINSNGFVTTTVEELLRWGRRNSLWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPR 62
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q+DV+IVAGT+ NK+A L+ ++DQMP+P++ ISMG CA+ GG + +YS ++G DRI+P
Sbjct: 63 QADVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCASAGGPFP-TYSTLQGVDRIIP 121
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VD+Y+PGCPPT + LIYGIL LQ+KI+ G K
Sbjct: 122 VDVYIPGCPPTPQGLIYGILQLQRKIKEQGITK 154
>gi|156598201|gb|ABU85364.1| NADH-plastoquinone oxidoreductase subunit K [Elaeis oleifera]
Length = 287
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+ + L W+R SL + +G +CC +E R+D +R+G P+
Sbjct: 66 PLLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPK 125
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I+ L+KKI R
Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAIMKLRKKISRE 219
>gi|139389268|ref|YP_001123034.1| photosystem II G protein [Aethionema grandiflorum]
gi|218527880|sp|A4QJK3|NDHK_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|134286230|dbj|BAF49858.1| photosystem II G protein [Aethionema grandiflorum]
Length = 229
Score = 216 bits (549), Expect = 2e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+ KI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRTKIARE 160
>gi|333031513|ref|ZP_08459574.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides coprosuis DSM
18011]
gi|332742110|gb|EGJ72592.1| NAD(P)H-quinone oxidoreductase subunit K [Bacteroides coprosuis DSM
18011]
Length = 214
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 74/180 (41%), Positives = 110/180 (61%), Gaps = 16/180 (8%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQL---------------VTWARTGSLMWMTFGLAC 64
+K+ S E + +L V++L V W R+ SL +TF +C
Sbjct: 8 KKIPKIKSMAYDEFKNNDYLENMVEELRSNGTNVVVGVLDDVVNWGRSNSLWPLTFATSC 67
Query: 65 CAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
C +E M R+D RFGF R SPRQ+D ++VAGT+T+KMA L+R+YDQM +P+YV
Sbjct: 68 CGIEFMAIGAARHDFARFGFEVARPSPRQADFIMVAGTITDKMAPVLKRLYDQMADPKYV 127
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
I+ G+C GG + SY VV+G D+I+PVD+++PGCPP EA+IYG++ LQ+K++ +
Sbjct: 128 IACGACTITGGPFKNSYHVVKGIDKILPVDVFIPGCPPRPEAMIYGLMQLQRKVKLERFI 187
>gi|317968579|ref|ZP_07969969.1| NADH dehydrogenase subunit B [Synechococcus sp. CB0205]
Length = 249
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 75/177 (42%), Positives = 114/177 (64%), Gaps = 4/177 (2%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
++ + Q S V A ++S+++ ++T++D L WAR SL + +G AC
Sbjct: 13 ALSLSALRDQRESSCNPVGAP--SVTSDLSE-NVILTTLDDLHNWARLSSLWPLLYGTAC 69
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
C +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI
Sbjct: 70 CFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVI 129
Query: 125 SMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 130 AMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVVKLRKKVGNE 186
>gi|332296570|ref|YP_004438493.1| NAD(P)H-quinone oxidoreductase subunit K [Thermodesulfobium
narugense DSM 14796]
gi|332179673|gb|AEE15362.1| NAD(P)H-quinone oxidoreductase subunit K [Thermodesulfobium
narugense DSM 14796]
Length = 178
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 90/157 (57%), Positives = 116/157 (73%), Gaps = 5/157 (3%)
Query: 31 SEITHKGFLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
I +V+ +D+ +V W R SL MTFGLACCA+EMM P DL+RFG
Sbjct: 18 KAIPAANAIVSPIDKAINWVVNWGRVSSLWPMTFGLACCAIEMMAVGAPHNDLDRFGILF 77
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+D+MIVAGT+T KMA LRRVYDQMP+PRYVISMGSCAN GG ++ +YSV++G
Sbjct: 78 RASPRQADLMIVAGTVTLKMAPVLRRVYDQMPQPRYVISMGSCANSGGIFN-TYSVLQGV 136
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
D++VPVD+Y+PGCPP EAL++ +L LQ+KI++ V
Sbjct: 137 DQVVPVDVYLPGCPPRPEALLHALLYLQQKIKKERMV 173
>gi|291296255|ref|YP_003507653.1| NADH-quinone oxidoreductase B subunit [Meiothermus ruber DSM 1279]
gi|290471214|gb|ADD28633.1| NADH-quinone oxidoreductase, B subunit [Meiothermus ruber DSM 1279]
Length = 179
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 85/162 (52%), Positives = 120/162 (74%), Gaps = 2/162 (1%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+ F++ E+ ++G L T++++L+ W R+ SL TFGLACCA+EMM ++ R DL R
Sbjct: 4 IADLFTKDVQELENEGVLFTTLEKLIAWGRSNSLWPATFGLACCAIEMMASTDARNDLSR 63
Query: 82 FG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
FG RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++ +Y
Sbjct: 64 FGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN-NY 122
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
++V+ D +VPVD++VPGCPP EALIY ++ LQKKI+
Sbjct: 123 AIVQNVDSVVPVDVFVPGCPPRPEALIYAVMQLQKKIQGKAR 164
>gi|133712065|gb|ABO36708.1| photosystem II G protein [Populus trichocarpa]
Length = 237
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 19 PLLDRTTPISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 78
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE +YVI+MG+C GG + SYS VRG
Sbjct: 79 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGV 138
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 139 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 172
>gi|254415153|ref|ZP_05028915.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
[Microcoleus chthonoplastes PCC 7420]
gi|196177959|gb|EDX72961.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
[Microcoleus chthonoplastes PCC 7420]
Length = 247
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 73/180 (40%), Positives = 109/180 (60%), Gaps = 1/180 (0%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ T S Q + ++ ++ + ++T+VD L WAR SL M +G
Sbjct: 1 MNTDTANAASQQQQPKEKIINPISRPQVTQNLSENVILTTVDDLYNWARLSSLWPMMYGT 60
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACC +E R+D +RFG PR SPRQ+D++I AGT+T KM AL R+Y+QMPEP+Y
Sbjct: 61 ACCFIEFAAMIGSRFDFDRFGLVPRCSPRQADLIITAGTITMKMTPALVRLYEQMPEPKY 120
Query: 123 VISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
V++MG+C GG + S + VRG D+++PVD+Y+PGCPP EA++ I+ L+KK+
Sbjct: 121 VMAMGACTITGGMFSVDSPTAVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKVANES 180
>gi|89280639|ref|YP_514856.1| NADH dehydrogenase subunit K [Solanum lycopersicum]
gi|91208992|ref|YP_538852.1| NADH dehydrogenase subunit K [Solanum bulbocastanum]
gi|108773134|ref|YP_635643.1| NADH dehydrogenase subunit K [Solanum tuberosum]
gi|84371899|gb|ABC56217.1| NADH-plastoquinone oxidoreductase subunit K [Solanum bulbocastanum]
gi|84371987|gb|ABC56304.1| NADH-plastoquinone oxidoreductase subunit K [Solanum lycopersicum]
gi|88656808|gb|ABD47061.1| NADH-plastoquinone oxidoreductase subunit K [Solanum tuberosum]
gi|89241675|emb|CAJ32397.1| NADH dehydrogenase subunit K [Solanum lycopersicum]
Length = 284
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 60 MNSIQFPLLDRTAPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQSD+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 120 YGLVPRSSPRQSDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219
>gi|260940357|ref|XP_002614478.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851664|gb|EEQ41128.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 208
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 106/165 (64%), Positives = 125/165 (75%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ D + + + +TS+D + WAR S +TFGLACCAVEMM S PRYD
Sbjct: 39 METDLPLMSQKTASSPIDYALTSLDAIAMWARKSSFWPVTFGLACCAVEMMHVSTPRYDQ 98
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
+R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQM +PR+VISMGSCANGGGYYHYS
Sbjct: 99 DRLGIIFRASPRQSDIMIVAGTLTNKMAPALRQVYDQMADPRWVISMGSCANGGGYYHYS 158
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YSVVRGCDR+VPVDIYVPGCPPTAEAL+YG+ LQKK+ + +
Sbjct: 159 YSVVRGCDRVVPVDIYVPGCPPTAEALMYGVFQLQKKMMKTRVTR 203
>gi|112032666|gb|ABH88301.1| NADH-plastoquinone oxidoreductase subunit K [Drimys granadensis]
Length = 287
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + T + T+ + L W+R SL + +G +CC +E R+D +R
Sbjct: 61 INSIEFPLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 120
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 121 YGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 180
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 181 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220
>gi|154795229|ref|YP_001023705.2| NADH dehydrogenase subunit K [Angiopteris evecta]
Length = 232
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 68/151 (45%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ + T+++ WAR SL + +G +CC +E R+D +R+G PR+SP
Sbjct: 10 DKNMSNSIISTNLNDFSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 69
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRI 149
RQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++
Sbjct: 70 RQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGIDKL 129
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+PVD+Y+PGCPP EA+I I+ L+KK+ +
Sbjct: 130 IPVDVYLPGCPPKPEAIIDAIIKLRKKVAQE 160
>gi|167764930|ref|ZP_02437051.1| hypothetical protein BACSTE_03322 [Bacteroides stercoris ATCC
43183]
gi|167697599|gb|EDS14178.1| hypothetical protein BACSTE_03322 [Bacteroides stercoris ATCC
43183]
Length = 195
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 73/162 (45%), Positives = 106/162 (65%), Gaps = 3/162 (1%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NETLEKLVRELNAGGANVAIGVLDDFIDWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFGF RASPRQ+D+++V GT+TNKMA L+R+YDQM +P+YVI++G CA GG + S
Sbjct: 80 RFGFEVARASPRQADMIMVCGTITNKMAPVLKRLYDQMADPKYVIAVGGCAVSGGPFKKS 139
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y VV G D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 140 YHVVNGVDKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 181
>gi|194336921|ref|YP_002018715.1| NADH-quinone oxidoreductase, B subunit [Pelodictyon
phaeoclathratiforme BU-1]
gi|238065188|sp|B4SBZ2|NUOB_PELPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|194309398|gb|ACF44098.1| NADH-quinone oxidoreductase, B subunit [Pelodictyon
phaeoclathratiforme BU-1]
Length = 189
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 88/154 (57%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ + IT L+TSVD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+
Sbjct: 4 LDAGITQHNVLITSVDNVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
SPRQSD+MIVAGT+T KMA + R+Y+QMPEPRYV+SMGSC+N GG Y + Y V++G D
Sbjct: 64 SPRQSDLMIVAGTVTMKMAERVIRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
R++PVD++VPGCPP E+LI G++ +Q+ IR
Sbjct: 124 RVIPVDVFVPGCPPRPESLIGGLMKVQELIRMEQ 157
>gi|290489730|gb|ADD31249.1| NADH-plastoquinone oxidoreductase subunit K protein [Euonymus
americanus]
Length = 228
Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTESYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|154795252|ref|YP_001294356.2| NADH dehydrogenase subunit K [Dioscorea elephantipes]
gi|218527899|sp|A6MML1|NDHK_DIOEL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats.
Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+
Sbjct: 8 LLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 67
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCD 147
SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C GG + SYS VRG D
Sbjct: 68 SPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVD 127
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 128 KLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|148668050|gb|ABR01434.1| NADH-plastoquinone oxidoreductase subunit K [Dioscorea
elephantipes]
Length = 247
Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats.
Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+
Sbjct: 30 LLDQTTPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRS 89
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCD 147
SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C GG + SYS VRG D
Sbjct: 90 SPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYSTVRGVD 149
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 150 KLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 182
>gi|260436695|ref|ZP_05790665.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH
8109]
gi|260414569|gb|EEX07865.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH
8109]
Length = 246
Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats.
Identities = 74/183 (40%), Positives = 115/183 (62%), Gaps = 4/183 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
T+ + + S + A ++++++ ++TS+D L WAR SL + +G
Sbjct: 4 NTSPSISAVRDLREASCGPIGAPT--VTNDLSE-NVILTSLDDLHNWARLSSLWPLLYGT 60
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACC +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+Y
Sbjct: 61 ACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKY 120
Query: 123 VISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 121 VIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGDES 180
Query: 182 NVK 184
+
Sbjct: 181 LAE 183
>gi|317121157|ref|YP_004101160.1| NADH dehydrogenase subunit B [Thermaerobacter marianensis DSM
12885]
gi|315591137|gb|ADU50433.1| NADH dehydrogenase subunit B [Thermaerobacter marianensis DSM
12885]
Length = 193
Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 84/180 (46%), Positives = 115/180 (63%), Gaps = 2/180 (1%)
Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
G+T + +++ + + G + T++ LV W R SL ++ FG
Sbjct: 13 GITLADLAWDETDPDHLIDRAAERLPGVWEYLP--GVITTNLQTLVNWGRKNSLWYLLFG 70
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
+ACCA+EMM A R DL+R G RASPRQ+D+MIVAGT+T KMA ++ +YDQM EP+
Sbjct: 71 IACCAIEMMAAGASRIDLDRLGSVFRASPRQADLMIVAGTVTEKMAPVIKTLYDQMAEPK 130
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
YVI+MG+CA+ GG Y+ Y+VV G D+IVPVD+YV GCPP EALIY I+ LQ K+ R
Sbjct: 131 YVIAMGACASNGGPYYQGYNVVDGVDKIVPVDVYVAGCPPRPEALIYAIMKLQDKVARAN 190
>gi|197116578|ref|YP_002137005.1| trifunctional NADH dehydrogenase subunit I B/C/D [Geobacter
bemidjiensis Bem]
gi|218528047|sp|B5E972|NUBCD_GEOBB RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
Full=NADH dehydrogenase I subunit B/C/D; AltName:
Full=NDH-1 subunit B/C/D
gi|197085938|gb|ACH37209.1| NADH dehydrogenase I, B/C/D subunits [Geobacter bemidjiensis Bem]
Length = 794
Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 78/158 (49%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
S+ + + L+ S+D ++ W R SL M FGL+CC VEMM + RYD+ RFG
Sbjct: 1 MSQGDDDKIPENVLLASLDDMINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDVSRFGAE 60
Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
R +PR+SD+M++AGT+ KMA ++ R+YDQM EP++VISMGSCAN GG Y YSVV+
Sbjct: 61 VLRGTPRESDLMVIAGTVFKKMAPSILRLYDQMAEPKWVISMGSCANSGGMY-DVYSVVQ 119
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G ++I+PVD+Y+PGCPP E+ + G++LLQ+KIR
Sbjct: 120 GVNQILPVDLYIPGCPPRPESFLEGLMLLQQKIRSEER 157
>gi|301107946|ref|XP_002903055.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
T30-4]
gi|262098173|gb|EEY56225.1| NADH ubiquinone oxidoreductase, putative [Phytophthora infestans
T30-4]
Length = 155
Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 98/146 (67%), Positives = 123/146 (84%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++V+ +D L+ W++ SL ++FGLACCAVEMM + RYD ER G RASPR +DVMI
Sbjct: 4 YVVSRLDDLMNWSKKSSLWPLSFGLACCAVEMMHTAGSRYDFERMGLLFRASPRCTDVMI 63
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGT+TNKMA ALRR+YDQMPEP++VISMGSCANGGGYYHYSYSVVRG +RI+PVDIYVP
Sbjct: 64 VAGTVTNKMAPALRRIYDQMPEPKFVISMGSCANGGGYYHYSYSVVRGVNRILPVDIYVP 123
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
GCPPTAEAL++G++ LQKK++ ++
Sbjct: 124 GCPPTAEALLFGVMQLQKKLKGSKSL 149
>gi|290489736|gb|ADD31252.1| NADH-plastoquinone oxidoreductase subunit K protein [Heuchera
sanguinea]
Length = 255
Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 37 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 96
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 97 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 156
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 157 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 190
>gi|197131356|gb|ACH47196.1| NADH-plastoquinone oxidoreductase subunit K [Geranium macrorrhizum]
Length = 217
Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T L T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 ALLDRRTQNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|225872572|ref|YP_002754027.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC
51196]
gi|225792841|gb|ACO32931.1| NADH dehydrogenase I, B subunit [Acidobacterium capsulatum ATCC
51196]
Length = 186
Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 75/149 (50%), Positives = 108/149 (72%), Gaps = 2/149 (1%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
+G +T++D + W R S+ MTFGLACCA+EMM R+D+ RFG R SPRQ
Sbjct: 29 QPEGVFLTTLDSAINWVRKSSIWPMTFGLACCAIEMMSMGASRFDVARFGAEVFRPSPRQ 88
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
+D+M++AG ++ KMA +RR+YDQMPEP++VISMG+CA GG ++ +Y++++G ++++PV
Sbjct: 89 ADLMVIAGRVSQKMAPVIRRLYDQMPEPKWVISMGACATSGGVFN-NYALLQGVNQVIPV 147
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181
DIYVPGCPP E LIY LLQ+KI+
Sbjct: 148 DIYVPGCPPRPEQLIYAFTLLQEKIQNER 176
>gi|110227083|ref|YP_665562.1| NADH dehydrogenase subunit K [Populus alba]
gi|122243414|sp|Q14FF3|NDHK_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|109945521|dbj|BAE97209.1| NADH dehydrogenase subunit K [Populus alba]
Length = 225
Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTPISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE +YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160
>gi|37520318|ref|NP_923695.1| NADH dehydrogenase subunit B [Gloeobacter violaceus PCC 7421]
gi|81710972|sp|Q7NML6|NDHK1_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName:
Full=NAD(P)H dehydrogenase I subunit K 1; AltName:
Full=NDH-1 subunit K 1; Short=NDH-K 1
gi|35211311|dbj|BAC88690.1| NADH dehydrogenase subunit [Gloeobacter violaceus PCC 7421]
Length = 232
Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 71/161 (44%), Positives = 107/161 (66%), Gaps = 2/161 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+ ++SE+T ++T+++ L WAR S+ + +G +CC +E R+D +RF
Sbjct: 9 PIERPEVTSELT-NNVVLTTLNDLYNWARLSSVWPLMYGTSCCFIEFAGLIGSRFDFDRF 67
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYS 141
G PRASPRQ+D++I AGT+T KMA AL +Y+QMPEP+YVI+MG+C GG + SY+
Sbjct: 68 GLVPRASPRQADLIITAGTVTMKMAPALVTLYEQMPEPKYVIAMGACTITGGMFSTDSYT 127
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+
Sbjct: 128 TVRGVDKLIPVDVYIPGCPPRPEAIFDAIVKLRKKMATEDV 168
>gi|82754631|gb|ABB90045.1| NADH dehydrogenase subunit K [Solanum tuberosum]
Length = 284
Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 105/160 (65%), Gaps = 1/160 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ + + T+++ L W+R SL + +G +CC +E R+D +R
Sbjct: 60 MNSIQFPLLDRTAPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 119
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQSD+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY
Sbjct: 120 YGLVPRSSPRQSDLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSY 179
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
S VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 180 STVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219
>gi|222054362|ref|YP_002536724.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32]
gi|221563651|gb|ACM19623.1| NADH dehydrogenase I, D subunit [Geobacter sp. FRC-32]
Length = 792
Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats.
Identities = 79/148 (53%), Positives = 106/148 (71%), Gaps = 2/148 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
L+T++D L+ W R SL M FGL+CC VEMM + RYD+ RFG R +PR++D
Sbjct: 9 DNILLTNLDDLINWGRANSLWPMFFGLSCCFVEMMTSFTSRYDISRFGAEVLRGTPREAD 68
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+M++AGT+ KMA ++ +Y+QM EPR+VISMGSCAN GG Y YSVV+G ++I+PVD+
Sbjct: 69 LMVIAGTVFKKMAPSILTLYEQMAEPRWVISMGSCANSGGMY-DVYSVVQGVNQILPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182
YVPGCPP EA + G+LLLQ+KIR
Sbjct: 128 YVPGCPPRPEAFMQGLLLLQEKIRNDER 155
>gi|317046177|ref|YP_004072466.1| NADH dehydrogenase 32 kDa subunit [Corynocarpus laevigata]
gi|309252894|gb|ADO60314.1| NADH dehydrogenase 32 kDa subunit [Corynocarpus laevigata]
Length = 226
Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|154795237|ref|YP_740654.2| NADH-plastoquinone oxidoreductase subunit K [Nandina domestica]
gi|218527960|sp|Q09FV7|NDHK_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ IT + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRITQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
>gi|159899599|ref|YP_001545846.1| NADH dehydrogenase subunit B [Herpetosiphon aurantiacus ATCC 23779]
gi|238065011|sp|A9B4Z5|NUOB1_HERA2 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|159892638|gb|ABX05718.1| NADH-quinone oxidoreductase, B subunit [Herpetosiphon aurantiacus
ATCC 23779]
Length = 179
Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 110/157 (70%), Gaps = 2/157 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
+ + G + T+++ +V W RT ++ M FGLACCA+EMM YD+ RFG
Sbjct: 2 GLEEKAGDLGIVTTTLEGVVNWGRTKAMWPMLFGLACCAIEMMAGQASNYDMSRFGLELM 61
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+D+MIVAG ++ KMA LRR+YDQMPEP++V++MG CA+ GG Y+ +Y++V+G
Sbjct: 62 RASPRQADLMIVAGRVSRKMAPVLRRLYDQMPEPKWVVAMGDCASCGGVYN-NYAIVQGV 120
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
D IVPVD+YV GCPP EALI GIL L +KI+R
Sbjct: 121 DEIVPVDVYVAGCPPRPEALIDGILQLHEKIKRDKIT 157
>gi|73670849|ref|YP_306864.1| F420H2 dehydrogenase subunit B [Methanosarcina barkeri str. Fusaro]
gi|72398011|gb|AAZ72284.1| F420H2 dehydrogenase subunit B [Methanosarcina barkeri str. Fusaro]
Length = 184
Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats.
Identities = 75/184 (40%), Positives = 113/184 (61%), Gaps = 5/184 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLV-TSVDQLVTWARTGSLMWMT 59
MG V +K S S E++ + S+ I+ FL T V ++ W R SL +MT
Sbjct: 1 MG--EVKEKKTSKPYETSEEEIPGVITTTSNAISE--FLKKTKVQDIINWGRKNSLWFMT 56
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
+ CC VEM+ YD +RFG PR SPRQ+DVM+++G +T K AL+R+++QMP
Sbjct: 57 QPMGCCGVEMIAMGCAHYDTDRFGIIPRNSPRQADVMLISGYVTKKYLPALKRLWEQMPS 116
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VI+ G C+ GG ++ SYS V+ D I P+D++VPGCPP EA++ G + LQ+KI+
Sbjct: 117 PKWVIAFGDCSISGGPFYESYSTVQNIDEIFPIDVFVPGCPPRPEAMLQGFVELQEKIKA 176
Query: 180 VGNV 183
++
Sbjct: 177 KKDL 180
>gi|68164807|ref|YP_247603.1| NADH dehydrogenase subunit K [Cucumis sativus]
gi|75317261|sp|Q4VZH1|NDHK_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|67511402|emb|CAJ00762.1| NADH dehydrogenase subunit K [Cucumis sativus]
gi|74027105|gb|AAZ94655.1| NADH dehydrogenase 32 kDa subunit [Cucumis sativus]
gi|115432808|gb|ABI97421.1| NADH-plastoquinone oxidoreductase subunit K [Cucumis sativus]
Length = 226
Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQTSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|22298247|ref|NP_681494.1| NADH dehydrogenase subunit B [Thermosynechococcus elongatus BP-1]
gi|81743557|sp|Q8DKZ4|NDHK_THEEB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|22294426|dbj|BAC08256.1| NADH dehydrogenase subunit [Thermosynechococcus elongatus BP-1]
Length = 237
Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats.
Identities = 73/172 (42%), Positives = 108/172 (62%), Gaps = 4/172 (2%)
Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
+ + S L + + E+ ++TS++ + WAR SL + +G ACC +E
Sbjct: 1 MTNTTSPAILNPIARP--EVPQELAE-NIILTSLNDVYDWARLSSLWPLMYGTACCFIEF 57
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
R+D +RFG PR SPRQ+D++I +GT+T KMA AL R+Y+QMP P+YVI+MG+C
Sbjct: 58 AAMIGSRFDFDRFGLVPRNSPRQADLIITSGTITMKMAPALVRLYEQMPSPKYVIAMGAC 117
Query: 130 ANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
GG + SYS VRG D+++PVD+Y+PGCPP EA++ I+ L+KKI
Sbjct: 118 TITGGMFSSDSYSAVRGVDKLIPVDVYLPGCPPRPEAIMDAIVKLRKKIANE 169
>gi|209525746|ref|ZP_03274282.1| NADH-quinone oxidoreductase, B subunit [Arthrospira maxima CS-328]
gi|209493719|gb|EDZ94038.1| NADH-quinone oxidoreductase, B subunit [Arthrospira maxima CS-328]
Length = 241
Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 106/160 (66%), Gaps = 2/160 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+ +++ E++ ++T+VD L WAR SL + +G ACC +E R+D +RF
Sbjct: 15 PIERPQVTEELSE-NVILTTVDDLYNWARLSSLWPLLYGTACCFIEFAGLIGSRFDFDRF 73
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYS 141
G PR+SPRQ+D++I AGT+T K + L R+Y+QMPEP+YVI+MG+C GG + S +
Sbjct: 74 GLVPRSSPRQADLLITAGTITMKYSPMLVRLYEQMPEPKYVIAMGACTVTGGMFSMDSPT 133
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI
Sbjct: 134 AVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKIANES 173
>gi|172036678|ref|YP_001803179.1| NADH dehydrogenase subunit B [Cyanothece sp. ATCC 51142]
gi|218527887|sp|B1WZG1|NDHK_CYAA5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|171698132|gb|ACB51113.1| NADH dehydrogenase subunit K [Cyanothece sp. ATCC 51142]
Length = 247
Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 107/159 (67%), Gaps = 2/159 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
A +++ +++ ++T+VD L WAR SL + +G ACC +E R+D +RF
Sbjct: 23 PAARGQVTQDLSE-NIILTTVDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRF 81
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYS 141
G PR+SPRQ+D++I AGT+T KMA AL R+Y++MP+P+YVI+MG+C GG + S +
Sbjct: 82 GLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPDPKYVIAMGACTITGGMFSSDSTT 141
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+
Sbjct: 142 AVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVSNE 180
>gi|115531919|ref|YP_784075.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium x
hortorum]
gi|122164275|sp|Q06FV6|NDHK_PELHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|112382073|gb|ABI17266.1| NADH-plastoquinone oxidoreductase subunit K [Pelargonium x
hortorum]
Length = 227
Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRRTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|113200998|gb|ABI32513.1| NADH-plastoquinone oxidoreductase subunit K [Liriodendron
tulipifera]
Length = 285
Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 67 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220
>gi|290489740|gb|ADD31254.1| NADH-plastoquinone oxidoreductase subunit K protein [Oxalis
latifolia]
Length = 246
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 101/151 (66%), Gaps = 1/151 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
T + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SP
Sbjct: 31 DRTTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 90
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRI 149
RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++
Sbjct: 91 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 150
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+PVD+Y+PGCPP EA+I I L+KKI +
Sbjct: 151 IPVDVYLPGCPPKPEAVIDAITKLRKKISQE 181
>gi|290489710|gb|ADD31239.1| NADH-plastoquinone oxidoreductase subunit K protein [Ehretia
acuminata]
Length = 284
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 66 PLLDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 125
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 219
>gi|229577758|ref|YP_002836094.1| NADH-plastoquinone oxidoreductase subunit K [Megaleranthis
saniculifolia]
gi|226933886|gb|ACO92019.1| NADH-plastoquinone oxidoreductase subunit K [Megaleranthis
saniculifolia]
Length = 217
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
Query: 25 DFSRISSEITHKG-FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+F + I + + T+ + L W+R SL + +G +CC +E R+D +R+G
Sbjct: 5 EFPLLDRTIQNSNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYG 64
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSV 142
PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS
Sbjct: 65 LVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYST 124
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VRG D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 125 VRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 162
>gi|218527901|sp|A8SEA7|NDHK_CERDE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 228
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLFDRTTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMP+P+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
>gi|159161164|ref|YP_001542451.1| NADH-plastoquinone oxidoreductase subunit K [Ceratophyllum
demersum]
gi|148508447|gb|ABQ81454.1| NADH-plastoquinone oxidoreductase subunit K [Ceratophyllum
demersum]
gi|227481123|emb|CAP62502.1| photosystem II G protein [Ceratophyllum demersum]
Length = 249
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 28 PLFDRTTKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 87
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMP+P+YVI+MG+C GG + SYS VRG
Sbjct: 88 SSPRQADLILTAGTITMKMAPSLVRLYEQMPKPKYVIAMGACTITGGMFSTDSYSTVRGV 147
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 181
>gi|242310555|ref|ZP_04809710.1| NADH dehydrogenase I [Helicobacter pullorum MIT 98-5489]
gi|239522953|gb|EEQ62819.1| NADH dehydrogenase I [Helicobacter pullorum MIT 98-5489]
Length = 176
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 85/147 (57%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+TS+D+L+ W R+ SL MT+GLACCA+EMM RYD +RFG RASPRQSDVMI
Sbjct: 23 IALTSLDKLINWGRSNSLWAMTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQSDVMI 82
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGT+T K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P
Sbjct: 83 IAGTVTKKHAQFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 141
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y +++LQ+KIR+ +
Sbjct: 142 GCSPRPETLQYALMVLQQKIRKEKANR 168
>gi|228936583|ref|ZP_04099378.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228823098|gb|EEM68935.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
Length = 148
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 88/141 (62%), Positives = 108/141 (76%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+
Sbjct: 1 MEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTV 60
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP
Sbjct: 61 TKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPN 120
Query: 163 AEALIYGILLLQKKIRRVGNV 183
ALIYGI L++KIR +
Sbjct: 121 PAALIYGINKLKEKIRYEAKI 141
>gi|171910632|ref|ZP_02926102.1| NADH-quinone oxidoreductase, B subunit [Verrucomicrobium spinosum
DSM 4136]
Length = 177
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 76/154 (49%), Positives = 107/154 (69%), Gaps = 2/154 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
++T +D + W R SL M GLACCA+E+M + RYD+ RFG R S
Sbjct: 13 DSKIESNVVITRLDAAINWMRKNSLWPMPMGLACCAIELMATASSRYDISRFGAEVFRFS 72
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSDVM+VAGT+T KMA A++R++DQMPEP++ I+MG+CA+ GG Y SY+V++G DR+
Sbjct: 73 PRQSDVMVVAGTVTYKMALAVKRIWDQMPEPKWCIAMGACASSGGMYR-SYAVLQGIDRL 131
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+PVD+Y+ GCPP EAL+ G LQ+KI + ++
Sbjct: 132 IPVDVYISGCPPRPEALLEGFFRLQQKIEKEHSL 165
>gi|325126869|ref|YP_004286106.1| NADH-plastoquinone oxidoreductase subunit K [Fragaria vesca subsp.
vesca]
gi|324022781|gb|ADY15355.1| NADH-plastoquinone oxidoreductase subunit K [Fragaria vesca subsp.
vesca]
Length = 226
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 8 PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 67
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 68 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 127
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 128 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 161
>gi|323148834|ref|YP_004221927.1| NADH-plastoquinone oxidoreductase subunit K [Erodium carvifolium]
gi|316926298|gb|ADU58151.1| NADH-plastoquinone oxidoreductase subunit K [Erodium carvifolium]
Length = 227
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T L T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 ALLDRRTQNSVLSTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLVLTAGTVTLKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|313903494|ref|ZP_07836885.1| NADH dehydrogenase subunit B [Thermaerobacter subterraneus DSM
13965]
gi|313466315|gb|EFR61838.1| NADH dehydrogenase subunit B [Thermaerobacter subterraneus DSM
13965]
Length = 193
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 85/180 (47%), Positives = 115/180 (63%), Gaps = 2/180 (1%)
Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
G+T + +++ + + G + T++ LV W R SL ++ FG
Sbjct: 13 GITVADLAWDETDPEHLIDRAAERLPGVWEYLP--GVITTNLQTLVNWGRKNSLWYLLFG 70
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
+ACCA+EMM A R DL+R G RASPRQ+D+MIVAGT+T KMA ++ +YDQM EPR
Sbjct: 71 IACCAIEMMAAGASRIDLDRLGSVFRASPRQADMMIVAGTVTEKMAPVIKTLYDQMAEPR 130
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
YVI+MG+CA+ GG Y+ Y+VV G D+IVPVD+YV GCPP EALIY I+ LQ K+ R
Sbjct: 131 YVIAMGACASNGGPYYQGYNVVDGVDKIVPVDVYVAGCPPRPEALIYAIMKLQDKVARAN 190
>gi|218245900|ref|YP_002371271.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 8801]
gi|257058948|ref|YP_003136836.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 8802]
gi|238065003|sp|B7K0X4|NDHK_CYAP8 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|218166378|gb|ACK65115.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 8801]
gi|256589114|gb|ACV00001.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 8802]
Length = 250
Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats.
Identities = 73/174 (41%), Positives = 111/174 (63%), Gaps = 4/174 (2%)
Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
I Q+ L + +++ +++ ++T+VD L WAR SL + +G ACC +
Sbjct: 10 TTIQRQQTEKILNPIAR--GQVTQDLSE-NIILTTVDDLHNWARLSSLWPLLYGTACCFI 66
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YVI+MG
Sbjct: 67 EFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYVIAMG 126
Query: 128 SCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+C GG + S + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+
Sbjct: 127 ACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVSNE 180
>gi|154795232|ref|YP_636543.2| NADH dehydrogenase subunit K [Zygnema circumcarinatum]
Length = 248
Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats.
Identities = 66/153 (43%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
+ + + ++T++ + W R SL + +G +CC +E R+D +R+G PR+S
Sbjct: 6 TKQNVYDSVVLTTLQDVSNWVRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 65
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDR 148
PRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+
Sbjct: 66 PRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 125
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
++PVD+Y+PGCPP EA++ I+ L+KK+ +
Sbjct: 126 LIPVDVYLPGCPPKPEAIVDAIIKLRKKVAQEN 158
>gi|254421629|ref|ZP_05035347.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
[Synechococcus sp. PCC 7335]
gi|196189118|gb|EDX84082.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
[Synechococcus sp. PCC 7335]
Length = 242
Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats.
Identities = 72/161 (44%), Positives = 107/161 (66%), Gaps = 2/161 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
A + ++ +++ ++T+VD L W R SL + +G ACC +E R+D +RF
Sbjct: 15 PAAKTGVTQDLSE-NVILTTVDDLYNWTRLSSLFPLLYGTACCFIEFAALLGSRFDFDRF 73
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYS 141
G APRASPRQ+D++IVAGT+T KMA AL R+Y+QMP+P YV++MG+C GG + S +
Sbjct: 74 GLAPRASPRQADLIIVAGTVTMKMAPALVRLYEQMPKPAYVMAMGACTITGGMFSADSPT 133
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
+RG D+I+PVD+Y+PGCPP EA+ ++ L+KKI
Sbjct: 134 ALRGVDKIIPVDVYIPGCPPRPEAIFDAVIKLRKKIANESM 174
>gi|74381713|emb|CAI53798.1| photosystem II G protein [Acorus calamus]
gi|156573647|gb|ABU85157.1| NADH-plastoquinone oxidoreductase subunit K [Acorus americanus]
Length = 297
Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 65 PLLDRTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 124
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 125 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 184
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 185 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKLSRE 218
>gi|218527904|sp|A6MM40|NDHK_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 200
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLVDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
>gi|1173548|gb|AAC44353.1| NADH dehydrogenase type 1 subunit [Nostoc sp. PCC 7120]
Length = 245
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 71/175 (40%), Positives = 112/175 (64%), Gaps = 4/175 (2%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+N + + + ++ ++ +++ ++T+VD L WAR SL + FG ACC
Sbjct: 3 LNSDLTTQDIERIINPIERPT--VTQDLSE-NVILTTVDDLYNWARLSSLWPLLFGTACC 59
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
+E R+D +RFG PR+SPRQ+D++I AGT+T KMA + R+Y++MPEP+YVI+
Sbjct: 60 FIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQMVRLYEKMPEPKYVIA 119
Query: 126 MGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+I ++ L+KKI
Sbjct: 120 MGACTITGGMFSVESPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAMIKLRKKIAN 174
>gi|37521948|ref|NP_925325.1| NADH dehydrogenase subunit B [Gloeobacter violaceus PCC 7421]
gi|81709608|sp|Q7NI05|NDHK2_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName:
Full=NAD(P)H dehydrogenase I subunit K 2; AltName:
Full=NDH-1 subunit K 2; Short=NDH-K 2
gi|35212947|dbj|BAC90320.1| NADH dehydrogenase subunit K [Gloeobacter violaceus PCC 7421]
Length = 249
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 69/172 (40%), Positives = 108/172 (62%), Gaps = 2/172 (1%)
Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
+ + + + ++SE+++ ++T+++ L WAR S+ + +G ACC +E
Sbjct: 1 MFNDRPQTDRMFFPPERPEVTSELSN-NVVLTTLNDLYNWARLSSVWPLMYGTACCFIEF 59
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
R+D +RFG PRASPRQ+D++I AGT+T K A AL +Y QMPEP+YVI+MG+C
Sbjct: 60 AGLIGSRFDFDRFGLVPRASPRQADLIITAGTITMKFAPALVTLYQQMPEPKYVIAMGAC 119
Query: 130 ANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
GG + S + VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+
Sbjct: 120 TITGGMFSTDSPTTVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKMATE 171
>gi|194476962|ref|YP_002049141.1| NADH dehydrogenase beta subunit [Paulinella chromatophora]
gi|218527929|sp|B1X4R2|NDHK_PAUCH RecName: Full=NAD(P)H-quinone oxidoreductase subunit K, organellar
chromatophore; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|171191969|gb|ACB42931.1| NADH dehydrogenase beta subunit [Paulinella chromatophora]
Length = 246
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 107/155 (69%), Gaps = 2/155 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
++++++ ++TS+D L WAR SL + +G ACC +E R+D +RFG P
Sbjct: 22 PTVTNDLSE-NIILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 80
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG
Sbjct: 81 RSSPRQADLIIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSSDSTTAVRG 140
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 141 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGNE 175
>gi|154795218|ref|YP_001109505.2| NADH dehydrogenase subunit K [Populus trichocarpa]
gi|224173986|ref|XP_002339836.1| predicted protein [Populus trichocarpa]
gi|218527945|sp|A4GYR4|NDHK_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|222832334|gb|EEE70811.1| predicted protein [Populus trichocarpa]
Length = 225
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTPISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE +YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAIIDAITKLRKKISRE 160
>gi|217424871|ref|ZP_03456368.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei 576]
gi|217392327|gb|EEC32352.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei 576]
Length = 264
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 107/151 (70%), Positives = 126/151 (83%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR
Sbjct: 104 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 163
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 164 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 223
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VD+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 224 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 254
>gi|110456747|gb|ABG74842.1| NADH dehydrogenase 32 kDa subunit [Menodora longiflora]
Length = 213
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 69/153 (45%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQRVQNSVFSTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLMRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISR 159
>gi|108773214|ref|YP_635742.1| NADH dehydrogenase subunit K [Chara vulgaris]
gi|122231312|sp|Q1ACK5|NDHK_CHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|77157870|gb|ABA61911.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Chara vulgaris]
Length = 244
Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats.
Identities = 68/164 (41%), Positives = 111/164 (67%), Gaps = 1/164 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+++ +++I ++T+++ L WAR SL + +G +CC +E R+D +R
Sbjct: 24 INSTERLTTNQILSTSVILTTMNDLTNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDR 83
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSY 140
+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QM EP+YVI+MG+C GG + SY
Sbjct: 84 YGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSY 143
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
S VRG D+++PV++Y+PGCPP EA+I G++ L+K+I + +
Sbjct: 144 STVRGVDKLIPVNVYLPGCPPKPEAIIDGVIKLRKQIAQENTNQ 187
>gi|290489716|gb|ADD31242.1| NADH-plastoquinone oxidoreductase subunit K protein [Meliosma aff.
cuneifolia Moore 333]
Length = 285
Score = 214 bits (544), Expect = 5e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 67 PLLERTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220
>gi|258568476|ref|XP_002584982.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit [Uncinocarpus
reesii 1704]
gi|237906428|gb|EEP80829.1| NADH-ubiquinone oxidoreductase 19.3 kDa subunit [Uncinocarpus
reesii 1704]
Length = 176
Score = 214 bits (544), Expect = 5e-54, Method: Composition-based stats.
Identities = 113/171 (66%), Positives = 128/171 (74%), Gaps = 6/171 (3%)
Query: 20 EKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
K + S+ +G F +T++DQ+ WAR SL MTFGLACCAVEMM S PR
Sbjct: 1 MKKPRREVPLPSQEKREGAMQFALTTLDQVANWARQSSLWPMTFGLACCAVEMMHLSTPR 60
Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
YD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGSCANGGGYY
Sbjct: 61 YDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGSCANGGGYY 120
Query: 137 HYSYSVVRGCDRIVPVDIYVPGC---PPTAEALIYGILLLQKKIRRVGNVK 184
HYSYSV RGCDRIVPVDIYVPG PPT+EAL+YGI LQKK+R +
Sbjct: 121 HYSYSVTRGCDRIVPVDIYVPGSLKGPPTSEALMYGIFQLQKKMRHTQITR 171
>gi|242810530|ref|XP_002485599.1| NADH-plastoquinone oxidoreductase, putative [Talaromyces stipitatus
ATCC 10500]
gi|218716224|gb|EED15646.1| NADH-plastoquinone oxidoreductase, putative [Talaromyces stipitatus
ATCC 10500]
Length = 195
Score = 214 bits (544), Expect = 5e-54, Method: Composition-based stats.
Identities = 96/158 (60%), Positives = 121/158 (76%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
S+ + + G+++TSVDQ+V WAR SL ++F LACC +EMMQ SMP+YD +R G
Sbjct: 33 SQERKDSSAAGYVLTSVDQIVNWARQNSLWALSFVLACCTIEMMQVSMPQYDQDRLGIIF 92
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
ASPRQ+DVM+VAGT+T+KMA ALR+ YDQM EPR++I+MGSCANGGGYYHY YSVVRG
Sbjct: 93 SASPRQADVMVVAGTVTSKMAPALRQCYDQMSEPRWLITMGSCANGGGYYHYIYSVVRGV 152
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
DRI+PVD+Y+PGC PT EA +YG LQ KIR +
Sbjct: 153 DRIIPVDVYIPGCSPTPEAFLYGTFQLQNKIRTTKVTR 190
>gi|156598283|gb|ABU85403.1| NADH-plastoquinone oxidoreductase subunit K [Ginkgo biloba]
Length = 288
Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 105/159 (66%), Gaps = 1/159 (0%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+ S + + T + T+ + + WAR SL + +G +CC++E R+D +R+
Sbjct: 60 NPIESPLPNRTTPNSVISTTPNDMSNWARLTSLWPLLYGTSCCSIEFASLIGSRFDFDRY 119
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYS 141
G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEPRYVI+MG+C GG + SYS
Sbjct: 120 GLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPRYVIAMGACTITGGMFSTDSYS 179
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VRG D+++PVD+Y+PGCPP E +I I L++KI R
Sbjct: 180 TVRGVDKLIPVDVYLPGCPPKPEVIIDAITKLREKIARE 218
>gi|78186619|ref|YP_374662.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Chlorobium
luteolum DSM 273]
gi|123583245|sp|Q3B4W2|NUOB_PELLD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|78166521|gb|ABB23619.1| NADH dehydrogenase subunit B [Chlorobium luteolum DSM 273]
Length = 189
Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats.
Identities = 86/154 (55%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ + + LV VD ++ WAR SL M FGLACCA+EMM + YDLERFG PR+
Sbjct: 4 LDAGFSRDNVLVAPVDAVLNWARLSSLWPMGFGLACCAIEMMATNASNYDLERFGIFPRS 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCD 147
SPRQSD+MIVAGT++ KMA + R+Y+QMPEPRYV+SMGSC+N GG Y + Y V++G D
Sbjct: 64 SPRQSDLMIVAGTVSMKMAERVVRLYEQMPEPRYVLSMGSCSNCGGPYWEHGYHVLKGVD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
R++PVD+YVPGCPP EALI G++ +Q+ IR
Sbjct: 124 RVIPVDVYVPGCPPRPEALIGGLMKVQELIRMEQ 157
>gi|283782292|ref|YP_003373047.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068]
gi|283440745|gb|ADB19187.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068]
Length = 227
Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats.
Identities = 82/156 (52%), Positives = 112/156 (71%), Gaps = 2/156 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRAS 89
+ TSV+Q + WAR S+ MTFGLACCA+EMM A RYD++RFG A RA+
Sbjct: 27 EARVEENVFTTSVEQAINWARQSSIWPMTFGLACCAIEMMAAGASRYDMDRFGAGAFRAT 86
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-YHYSYSVVRGCDR 148
PRQ+D+MIVAGT+T KMAS +RR+Y+ MP+P++VI+MG+C GGG + + Y VV+G D
Sbjct: 87 PRQADLMIVAGTVTYKMASRVRRLYNMMPDPKFVIAMGACTVGGGPYFKWGYHVVKGVDL 146
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+VPVD+Y+PGCPP EAL+ G++ +Q KI+ K
Sbjct: 147 VVPVDVYIPGCPPRPEALLEGLMRIQDKIKGHRIAK 182
>gi|149390272|ref|YP_001294102.1| NADH-plastoquinone oxidoreductase subunit K [Chloranthus spicatus]
gi|146744192|gb|ABQ43264.1| NADH-plastoquinone oxidoreductase subunit K [Chloranthus spicatus]
Length = 275
Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats.
Identities = 68/183 (37%), Positives = 109/183 (59%), Gaps = 5/183 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRIS----SEITHKGFLVTSVDQLVTWARTGSLMWM 58
+ + ++ + ++ + I + T+ + L W+R SL +
Sbjct: 31 MAKRSIGMVLKNKKEGKDNIETIMNSIEFPLFERTAQNSVISTTSNDLSNWSRLSSLWPL 90
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
+G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMP
Sbjct: 91 LYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMP 150
Query: 119 EPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+K++
Sbjct: 151 EPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKRV 210
Query: 178 RRV 180
R
Sbjct: 211 SRE 213
>gi|225544128|ref|YP_002720116.1| ndhK [Jatropha curcas]
gi|224979569|gb|ACN72696.1| ndhK [Jatropha curcas]
Length = 225
Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDQTTKISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|228917908|ref|ZP_04081444.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228949019|ref|ZP_04111292.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228968422|ref|ZP_04129414.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228988523|ref|ZP_04148611.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229076513|ref|ZP_04209474.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock4-18]
gi|229094409|ref|ZP_04225481.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock3-42]
gi|229099732|ref|ZP_04230658.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock3-29]
gi|229118795|ref|ZP_04248145.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock1-3]
gi|229124802|ref|ZP_04253981.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus 95/8201]
gi|229142039|ref|ZP_04270564.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-ST26]
gi|229175973|ref|ZP_04303469.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus MM3]
gi|228607466|gb|EEK64792.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus MM3]
gi|228641328|gb|EEK97634.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-ST26]
gi|228658677|gb|EEL14338.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus 95/8201]
gi|228664665|gb|EEL20157.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock1-3]
gi|228683702|gb|EEL37654.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock3-29]
gi|228688946|gb|EEL42773.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock3-42]
gi|228706605|gb|EEL58817.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock4-18]
gi|228771203|gb|EEM19681.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228791270|gb|EEM38880.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar sotto str. T04001]
gi|228810775|gb|EEM57123.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228841705|gb|EEM86816.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 148
Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats.
Identities = 88/141 (62%), Positives = 107/141 (75%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
++QL WAR+ SL MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+
Sbjct: 1 MEQLKGWARSNSLWPMTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTV 60
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP
Sbjct: 61 TKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPN 120
Query: 163 AEALIYGILLLQKKIRRVGNV 183
ALIYGI L++KIR
Sbjct: 121 PAALIYGINKLKEKIRYEAKT 141
>gi|218527892|sp|A6MMC6|NDHK_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 222
Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats.
Identities = 67/154 (43%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLFERTAQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+K++ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKRVSRE 160
>gi|154795221|ref|YP_740569.2| NADH-plastoquinone oxidoreductase subunit K [Platanus occidentalis]
gi|218527952|sp|Q09G42|NDHK_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 160
>gi|318042790|ref|ZP_07974746.1| NADH dehydrogenase subunit B [Synechococcus sp. CB0101]
Length = 241
Score = 214 bits (544), Expect = 7e-54, Method: Composition-based stats.
Identities = 76/177 (42%), Positives = 115/177 (64%), Gaps = 4/177 (2%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
++ + Q S S V A ++S+++ ++T++D L WAR SL + +G AC
Sbjct: 4 ALSIGALRDQRSASCNPVAAP--SVTSDLSE-NVILTTLDDLHNWARLSSLWPLLYGTAC 60
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
C +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI
Sbjct: 61 CFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVI 120
Query: 125 SMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 121 AMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGNE 177
>gi|322435876|ref|YP_004218088.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp.
MP5ACTX9]
gi|321163603|gb|ADW69308.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp.
MP5ACTX9]
Length = 205
Score = 214 bits (544), Expect = 7e-54, Method: Composition-based stats.
Identities = 84/196 (42%), Positives = 123/196 (62%), Gaps = 18/196 (9%)
Query: 3 LTTVNQKII-SGQSSCSLEKVDADFSRISSEITHK---------------GFLVTSVDQL 46
+TT +Q+ +G+ + + ++ D F G ++ S+D
Sbjct: 1 MTTPSQETTSNGRPTATPQQNDRYFFGTLDSFGKNQEKLREVNWGYDQPEGIVLASLDAA 60
Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNK 105
+ W R S+ MTFGLACCA+EMM RYD+ RFG R SPRQSD+MI+AG ++ K
Sbjct: 61 INWVRKNSVWPMTFGLACCAIEMMSMGGSRYDIARFGAEVFRPSPRQSDLMIIAGRVSQK 120
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
MA +RR+Y+QMPEP++VISMG+CA GG ++ +Y++++G ++I+PVDIYVPGCPP E
Sbjct: 121 MAPVIRRLYEQMPEPKWVISMGACATSGGVFN-NYALLQGVNQIIPVDIYVPGCPPRPEQ 179
Query: 166 LIYGILLLQKKIRRVG 181
L+Y I LLQ+KI+
Sbjct: 180 LLYAITLLQEKIQSER 195
>gi|313183826|ref|YP_004021669.1| NADH-plastoquinone oxidoreductase subunit K [Prunus persica]
gi|309321438|gb|ADO64979.1| NADH-plastoquinone oxidoreductase subunit K [Prunus persica]
Length = 226
Score = 214 bits (544), Expect = 7e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 8 PLLDRTTQNSVISTTSSDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 67
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 68 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 127
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 128 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 161
>gi|300869242|ref|ZP_07113836.1| NAD(P)H-quinone oxidoreductase subunit K [Oscillatoria sp. PCC
6506]
gi|300332787|emb|CBN59034.1| NAD(P)H-quinone oxidoreductase subunit K [Oscillatoria sp. PCC
6506]
Length = 240
Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats.
Identities = 75/170 (44%), Positives = 110/170 (64%), Gaps = 4/170 (2%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
Q + + V+ I+S+++ ++T+VD L WAR SL + +G ACC +E
Sbjct: 5 SDTQKTQLINPVERP--EITSQLSE-NVILTTVDDLYNWARLSSLWPLLYGTACCFIEFA 61
Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
R+D +RFG PR+SPRQ+D++I AGT+T K A L R+Y+QMPEP+YVI+MG+C
Sbjct: 62 ALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKYAPILVRLYEQMPEPKYVIAMGACT 121
Query: 131 NGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
GG + S + VRG D+++PVD+Y+PGCPP EA+I I+ L+KKI
Sbjct: 122 ITGGMFSMDSPTAVRGVDKLIPVDVYIPGCPPRPEAIIDAIIKLRKKIAN 171
>gi|126454466|ref|YP_001067829.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei 1106a]
gi|126228108|gb|ABN91648.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei 1106a]
Length = 262
Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats.
Identities = 107/151 (70%), Positives = 126/151 (83%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR
Sbjct: 102 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 161
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 162 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 221
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VD+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 222 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 252
>gi|290489708|gb|ADD31238.1| NADH-plastoquinone oxidoreductase subunit K protein [Dillenia
indica]
Length = 251
Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
R + + T+ + L W+R SL + +G +CC +E R+D +R+G
Sbjct: 29 PLLDRTTQNSVISSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYG 88
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSV 142
PR+SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C GG + SYS
Sbjct: 89 LVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGACTITGGMFSTDSYST 148
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 149 VRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 186
>gi|139389805|ref|YP_001123466.1| NADH dehydrogenase subunit K [Crucihimalaya wallichii]
gi|218527886|sp|A4QKT5|NDHK_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|134286667|dbj|BAF50290.1| photosystem II G protein [Crucihimalaya wallichii]
Length = 225
Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+ SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PVLDRTTKNSVISTTLNDLSNWSELSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|296936675|gb|ADH94347.1| NADH-plastoquinone oxidoreductase subunit K [Syzygium cumini]
Length = 284
Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 66 PLLARTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 125
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 126 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 219
>gi|16330876|ref|NP_441604.1| NADH dehydrogenase subunit B [Synechocystis sp. PCC 6803]
gi|131406|sp|P19050|NDHK1_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName:
Full=NAD(P)H dehydrogenase I subunit K 1; AltName:
Full=NDH-1 subunit K 1; Short=NDH-K 1; Flags: Precursor
gi|48047|emb|CAA35485.1| unnamed protein product [Synechocystis sp. PCC 6803]
gi|1653370|dbj|BAA18284.1| NADH dehydrogenase subunit; NdhK [Synechocystis sp. PCC 6803]
Length = 248
Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 108/160 (67%), Gaps = 2/160 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
A S+++ +++ ++T+VD L WA+ SL + +G ACC +E R+D +RF
Sbjct: 22 PASRSQVTQDLSE-NVILTTVDDLYNWAKLSSLWPLLYGTACCFIEFAALIGSRFDFDRF 80
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYS 141
G PR+SPRQ+D++I AGT+T KMA AL R+Y++MPEP+YVI+MG+C GG + S +
Sbjct: 81 GLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYVIAMGACTITGGMFSSDSTT 140
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VRG D+++PVD+Y+PGCPP EA+ I+ L+KK+
Sbjct: 141 AVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVANES 180
>gi|147669451|ref|YP_001214269.1| NADH-quinone oxidoreductase, B subunit [Dehalococcoides sp. BAV1]
gi|238055291|sp|A5FQY4|NUOB_DEHSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|146270399|gb|ABQ17391.1| NADH dehydrogenase subunit B [Dehalococcoides sp. BAV1]
Length = 200
Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats.
Identities = 83/183 (45%), Positives = 117/183 (63%), Gaps = 1/183 (0%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ +I + ++ E G +TSV++++ W+R SL + FGL
Sbjct: 17 IDQQEGGVIQSFRTGHTSPYPDPADWLNGEEPPPGVFITSVEKVLNWSRHYSLWPVMFGL 76
Query: 63 ACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
ACCA+EMM + R+DL RFG RASPRQ+D+MIVAGTLT KMA L+R+YDQMPEP+
Sbjct: 77 ACCAIEMMCMAASRWDLARFGMDIFRASPRQADLMIVAGTLTWKMAPWLKRIYDQMPEPK 136
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+V++MG+C GG + SYSVV G + +VPVD+YVPGCPP EAL+ I+ + +KI +
Sbjct: 137 WVLAMGACGTSGGLFRDSYSVVPGFNLVVPVDVYVPGCPPRPEALMRAIMDIHEKIDKTC 196
Query: 182 NVK 184
+K
Sbjct: 197 ILK 199
>gi|218295761|ref|ZP_03496557.1| NADH-quinone oxidoreductase, B subunit [Thermus aquaticus Y51MC23]
gi|218243920|gb|EED10447.1| NADH-quinone oxidoreductase, B subunit [Thermus aquaticus Y51MC23]
Length = 181
Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats.
Identities = 85/160 (53%), Positives = 118/160 (73%), Gaps = 2/160 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ F + E+ +G L T++++LV W R+ SL TFGLACCA+EMM ++ R DL
Sbjct: 1 MALKDLFEKDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDL 60
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG RASPRQ+DVMIVAG L+ KMA +RRV++QMP+P++VISMG+CA+ GG ++
Sbjct: 61 ARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFN- 119
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+Y++V+ D +VPVD+YVPGCPP EALIY ++ LQKK+R
Sbjct: 120 NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159
>gi|315453251|ref|YP_004073521.1| NADH-quinone oxidoreductase subunit B [Helicobacter felis ATCC
49179]
gi|315132303|emb|CBY82931.1| NADH-quinone oxidoreductase subunit B [Helicobacter felis ATCC
49179]
Length = 169
Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats.
Identities = 83/146 (56%), Positives = 110/146 (75%), Gaps = 1/146 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+T++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI
Sbjct: 16 IALTTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTLT K A RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+P
Sbjct: 76 IAGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
GC P E L Y +++LQ KIRR +
Sbjct: 135 GCAPRPETLQYALMVLQDKIRRQKAL 160
>gi|124024214|ref|YP_001018521.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
9303]
gi|218527919|sp|A2CCP6|NDHK_PROM3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|123964500|gb|ABM79256.1| putative respiratory-chain NADH dehydrogenase subunit
[Prochlorococcus marinus str. MIT 9303]
Length = 250
Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats.
Identities = 78/185 (42%), Positives = 117/185 (63%), Gaps = 5/185 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M +T + + + S V A ++SE++ ++TS+D L WAR SL + +
Sbjct: 1 MSVT-PSIDAVRDLRAASCGPVGAP--SVTSELSE-NIILTSLDDLHNWARLSSLWPLLY 56
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G ACC +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP
Sbjct: 57 GTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEP 116
Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 117 KYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGD 176
Query: 180 VGNVK 184
+
Sbjct: 177 ESVSE 181
>gi|169794077|ref|YP_001718441.1| NADH dehydrogenase subunit K [Manihot esculenta]
gi|326909397|ref|YP_004327666.1| NADH dehydrogenase subunit K [Hevea brasiliensis]
gi|218527912|sp|B1NWF4|NDHK_MANES RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|157695889|gb|ABV66158.1| NADH-plastoquinone oxidoreductase subunit K [Manihot esculenta]
gi|308523511|gb|ADO33561.1| NADH dehydrogenase subunit K [Hevea brasiliensis]
Length = 225
Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRTTQISVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|290489738|gb|ADD31253.1| NADH-plastoquinone oxidoreductase subunit K protein [Liquidambar
styraciflua]
Length = 285
Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 67 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 220
>gi|257453968|ref|ZP_05619244.1| NADH-quinone oxidoreductase subunit b [Enhydrobacter aerosaccus
SK60]
gi|257448633|gb|EEV23600.1| NADH-quinone oxidoreductase subunit b [Enhydrobacter aerosaccus
SK60]
Length = 220
Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats.
Identities = 80/180 (44%), Positives = 109/180 (60%), Gaps = 7/180 (3%)
Query: 9 KIISGQSSCSLEKVDADFSRI-SSEITHKGFLVTSVDQLV----TWARTGSLMWMTFGLA 63
K +++ ++ +I E +K ++T ++ L W R SL FG +
Sbjct: 2 KYTLTKANPDADRFPDQTRQIIDEEEVNKNVVMTRLEDLTHSLANWGRKHSLWPFNFGTS 61
Query: 64 CCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
CC VE +DL RFG RASPRQ+DVMIVAGT KMA ++R+Y+QM EP++
Sbjct: 62 CCYVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFMKMAPVIQRLYEQMLEPKW 121
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMG+CAN GG Y YSVV+G D+I+PVD+Y+PGCPP EALI I+LLQ+ I +
Sbjct: 122 VISMGACANSGGMY-DVYSVVQGVDKIIPVDVYIPGCPPRPEALIQAIMLLQESITKERR 180
>gi|122211719|sp|Q32RI3|NDHK_ZYGCR RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|61393680|gb|AAX45822.1| 27 kDa subunit of NADH-ubiquinone oxidoreductase [Zygnema
circumcarinatum]
Length = 255
Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats.
Identities = 66/153 (43%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
+ + + ++T++ + W R SL + +G +CC +E R+D +R+G PR+S
Sbjct: 13 TKQNVYDSVVLTTLQDVSNWVRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSS 72
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDR 148
PRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+
Sbjct: 73 PRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDK 132
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
++PVD+Y+PGCPP EA++ I+ L+KK+ +
Sbjct: 133 LIPVDVYLPGCPPKPEAIVDAIIKLRKKVAQEN 165
>gi|116075555|ref|ZP_01472814.1| NADH dehydrogenase subunit B [Synechococcus sp. RS9916]
gi|116066870|gb|EAU72625.1| NADH dehydrogenase subunit B [Synechococcus sp. RS9916]
Length = 255
Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats.
Identities = 74/181 (40%), Positives = 109/181 (60%), Gaps = 3/181 (1%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITH--KGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + + S V + T + ++TS+D L WAR SL + +G
Sbjct: 6 SPSISAVRDLRGASCGPVAGAAEGAPAVTTDLSENVILTSLDDLHNWARLSSLWPLLYGT 65
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACC +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+Y
Sbjct: 66 ACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKY 125
Query: 123 VISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 126 VIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVSNES 185
Query: 182 N 182
Sbjct: 186 V 186
>gi|114054474|gb|ABI49867.1| NADH-plastoquinone oxidoreductase subunit K [Nandina domestica]
Length = 285
Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ IT + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 67 PLLDRITQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220
>gi|296274502|ref|YP_003657133.1| NADH-quinone oxidoreductase subunit B [Arcobacter nitrofigilis DSM
7299]
gi|296098676|gb|ADG94626.1| NADH-quinone oxidoreductase, B subunit [Arcobacter nitrofigilis DSM
7299]
Length = 169
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 82/145 (56%), Positives = 113/145 (77%), Gaps = 1/145 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+++VD++V + R+ SL +T+GLACCA+EMM + RYD +RFG RASPRQ+DV+I
Sbjct: 16 IALSTVDKIVNFGRSNSLWPLTYGLACCAIEMMASGASRYDFDRFGTIFRASPRQADVLI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLT K A +RR+YDQMP+P++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+P
Sbjct: 76 VAGTLTKKHAEYMRRLYDQMPDPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
GC P E L Y +++LQKKIRR +
Sbjct: 135 GCAPRPETLQYALMMLQKKIRRESS 159
>gi|157164838|ref|YP_001466103.1| NADH dehydrogenase subunit B [Campylobacter concisus 13826]
gi|238055276|sp|A7ZBE5|NUOB_CAMC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|112800518|gb|EAT97862.1| NADH-quinone oxidoreductase, b subunit [Campylobacter concisus
13826]
Length = 170
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 85/147 (57%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++T+VD+LV W R+ SL +++GLACCA+EMM + RYD +RFG RASPR S+VMI
Sbjct: 16 VVLTTVDKLVQWGRSNSLWALSYGLACCAIEMMASGASRYDFDRFGTIFRASPRHSEVMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTLT K A RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+P
Sbjct: 76 IAGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYIP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y +++LQKKIR+ +
Sbjct: 135 GCAPRPETLQYALMMLQKKIRKQSAFR 161
>gi|46200221|ref|YP_005888.1| NADH-quinone oxidoreductase chain B [Thermus thermophilus HB27]
gi|55980054|ref|YP_143351.1| NADH dehydrogenase subunit B [Thermus thermophilus HB8]
gi|2499331|sp|Q56218|NQO6_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 6; AltName:
Full=NADH dehydrogenase I subunit 6; AltName: Full=NDH-1
subunit 6
gi|81405216|sp|Q72GC9|NUOB_THET2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|90109659|pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
gi|90109667|pdb|2FUG|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
gi|90109675|pdb|2FUG|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
gi|90109683|pdb|2FUG|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
gi|258588593|pdb|3I9V|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
gi|258588601|pdb|3I9V|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
gi|258588609|pdb|3IAM|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
With Bound Nadh
gi|258588617|pdb|3IAM|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
With Bound Nadh
gi|258588625|pdb|3IAS|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
Re-Refined To 3.15 Angstrom Resolution
gi|258588633|pdb|3IAS|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
Re-Refined To 3.15 Angstrom Resolution
gi|258588641|pdb|3IAS|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
Re-Refined To 3.15 Angstrom Resolution
gi|258588649|pdb|3IAS|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
Re-Refined To 3.15 Angstrom Resolution
gi|296863609|pdb|3M9S|6 Chain 6, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
gi|296863622|pdb|3M9S|F Chain F, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
gi|1279862|gb|AAA97939.1| NADH dehydrogenase I, subunit NQO6 [Thermus thermophilus]
gi|46197849|gb|AAS82261.1| NADH-quinone oxidoreductase chain B [Thermus thermophilus HB27]
gi|55771467|dbj|BAD69908.1| NADH-quinone oxidoreductase chain 6 [Thermus thermophilus HB8]
Length = 181
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 86/160 (53%), Positives = 118/160 (73%), Gaps = 2/160 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ F R E+ +G L T++++LV W R+ SL TFGLACCA+EMM ++ R DL
Sbjct: 1 MALKDLFERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDL 60
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG RASPRQ+DVMIVAG L+ KMA +RRV++QMP+P++VISMG+CA+ GG ++
Sbjct: 61 ARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFN- 119
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+Y++V+ D +VPVD+YVPGCPP EALIY ++ LQKK+R
Sbjct: 120 NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159
>gi|33864158|ref|NP_895718.1| NADH dehydrogenase subunit B [Prochlorococcus marinus str. MIT
9313]
gi|81576854|sp|Q7V4Q5|NDHK_PROMM RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|33635742|emb|CAE22067.1| putative respiratory-chain NADH dehydrogenase subunit
[Prochlorococcus marinus str. MIT 9313]
Length = 250
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 77/185 (41%), Positives = 117/185 (63%), Gaps = 5/185 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M +T + + + S V A ++S+++ ++TS+D L WAR SL + +
Sbjct: 1 MSVT-PSIDAVRDLRAASCGPVGAP--SVTSDLSE-NIILTSLDDLHNWARLSSLWPLLY 56
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G ACC +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP
Sbjct: 57 GTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEP 116
Query: 121 RYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 117 KYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGD 176
Query: 180 VGNVK 184
+
Sbjct: 177 ESVAE 181
>gi|290489724|gb|ADD31246.1| NADH-plastoquinone oxidoreductase subunit K protein [Berberidopsis
corallina]
Length = 285
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T ++T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 67 PLLDRTTQNSAILTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 220
>gi|290489718|gb|ADD31243.1| NADH-plastoquinone oxidoreductase subunit K protein [Nelumbo
nucifera]
Length = 285
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 67 PLLDRPTQNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220
>gi|296133536|ref|YP_003640783.1| NADH-quinone oxidoreductase, B subunit [Thermincola sp. JR]
gi|296032114|gb|ADG82882.1| NADH-quinone oxidoreductase, B subunit [Thermincola potens JR]
Length = 170
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 79/154 (51%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRAS 89
E+ ++++V+ W R+ SL +TFGLACCA+EMM A+ RYDL RFG R S
Sbjct: 10 DELVRNNVVLSTVEAAFNWCRSRSLWPLTFGLACCAIEMMAAADTRYDLARFGSEVFRPS 69
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ D+MI+AGT+T KM + R+Y+QM EP+YV++MGSCA GG + SY+VV G D
Sbjct: 70 PRQCDLMIIAGTITKKMQPVVLRLYEQMAEPKYVLAMGSCAISGGPFVDSYNVVLGGDTF 129
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+PVD+YVPGCPP EALIYGI+ L++K+ +
Sbjct: 130 LPVDVYVPGCPPRPEALIYGIMQLREKVANPKKI 163
>gi|291285958|ref|YP_003502774.1| NADH-quinone oxidoreductase, B subunit [Denitrovibrio acetiphilus
DSM 12809]
gi|290883118|gb|ADD66818.1| NADH-quinone oxidoreductase, B subunit [Denitrovibrio acetiphilus
DSM 12809]
Length = 158
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 79/149 (53%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
+ L TS+D ++ + R GS+ +TFGLACCA+EMM ++DL+R G RA+PRQ+D+
Sbjct: 10 ENVLTTSIDNVINYCRKGSIWPVTFGLACCAIEMMATGAAKFDLDRMGIIFRATPRQADL 69
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIVAGT+T KMA +R+VY QMPEP++VI+MGSCA GG Y +YS V+G D ++PVD Y
Sbjct: 70 MIVAGTVTRKMAPVVRKVYVQMPEPKWVIAMGSCATSGGIY-DTYSTVQGVDEVIPVDFY 128
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VPGCPP EAL+ I+ LQ KI ++
Sbjct: 129 VPGCPPRPEALLDAIVALQSKIMTEKVLR 157
>gi|297565713|ref|YP_003684685.1| NADH-quinone oxidoreductase subunit B [Meiothermus silvanus DSM
9946]
gi|296850162|gb|ADH63177.1| NADH-quinone oxidoreductase, B subunit [Meiothermus silvanus DSM
9946]
Length = 179
Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats.
Identities = 87/165 (52%), Positives = 121/165 (73%), Gaps = 2/165 (1%)
Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
+ + FS+ E+ ++G L T++++LV W R+ SL TFGLACCA+EMM ++ R D
Sbjct: 1 MPSLLDLFSKDVQELENEGVLFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARND 60
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
L RFG RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++
Sbjct: 61 LARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN 120
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
+Y++V+ D +VPVD+YVPGCPP EALIY ++ LQKK++
Sbjct: 121 -NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVQGKAR 164
>gi|320449689|ref|YP_004201785.1| NADH-quinone oxidoreductase subunit B [Thermus scotoductus SA-01]
gi|320149858|gb|ADW21236.1| NADH-quinone oxidoreductase, subunit B [Thermus scotoductus SA-01]
Length = 181
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 86/160 (53%), Positives = 118/160 (73%), Gaps = 2/160 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ F R E+ +G L T++++LV W R+ SL TFGLACCA+EMM ++ R DL
Sbjct: 1 MALKDLFERDVQELEREGILFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDL 60
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG RASPRQ+DVMIVAG L+ KMA +RRV++QMP+P++VISMG+CA+ GG ++
Sbjct: 61 ARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWVISMGACASSGGMFN- 119
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+Y++V+ D +VPVD+YVPGCPP EALIY ++ LQKK+R
Sbjct: 120 NYAIVQNVDSVVPVDVYVPGCPPRPEALIYAVMQLQKKVR 159
>gi|328953790|ref|YP_004371124.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans
DSM 11109]
gi|328454114|gb|AEB09943.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans
DSM 11109]
Length = 174
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 82/148 (55%), Positives = 108/148 (72%), Gaps = 2/148 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E L TS++++V WAR SL TFGLACCA+EM+ + RYD+ RFG RAS
Sbjct: 4 EEHLGNNILTTSLEKMVDWARKNSLWPATFGLACCAIEMIVTAANRYDIARFGMEAFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAGT+T KM A+ R+Y+QM EP++VI+MG+CA+ GG + SY+VV+G D+
Sbjct: 64 PRQADLMIVAGTVTKKMVPAVVRIYEQMTEPKWVIAMGACASSGGIFR-SYAVVQGIDQY 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
+PVD+YVPGCPP E L+YGIL L KI
Sbjct: 123 LPVDVYVPGCPPRPEGLLYGILKLHDKI 150
>gi|159901492|ref|YP_001547739.1| NADH dehydrogenase subunit B [Herpetosiphon aurantiacus ATCC 23779]
gi|238065032|sp|A9B478|NUOB2_HERA2 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|159894531|gb|ABX07611.1| NADH-quinone oxidoreductase, B subunit [Herpetosiphon aurantiacus
ATCC 23779]
Length = 250
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 80/152 (52%), Positives = 109/152 (71%), Gaps = 1/152 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
+ ++ +G L T++++L W R S+ M FGLACCA+EM+ A+ RYD+ RFG
Sbjct: 5 QTQMDLEQQGVLFTTINKLYNWGRRSSVWPMQFGLACCAIEMIAAAASRYDISRFGSELF 64
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+DVMIVAGT+T KM + R+++QMPEPRYVISMG+CA GG + Y+VVRG
Sbjct: 65 RASPRQADVMIVAGTVTKKMVPQVVRLFNQMPEPRYVISMGACATSGGPFRDGYNVVRGV 124
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
D VPVD+Y+PGCPP EAL++ ++ LQ +I
Sbjct: 125 DLYVPVDVYIPGCPPRPEALLHALMTLQAQID 156
>gi|167841106|ref|ZP_02467790.1| NADH dehydrogenase subunit B [Burkholderia thailandensis MSMB43]
Length = 167
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 108/151 (71%), Positives = 126/151 (83%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR
Sbjct: 7 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 66
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 67 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 126
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VDIYVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 127 VDIYVPGCPPTAEALVYGLMQLQRKVAERST 157
>gi|78183815|ref|YP_376249.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9902]
gi|123582227|sp|Q3B0C2|NDHK_SYNS9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|78168109|gb|ABB25206.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Synechococcus sp.
CC9902]
Length = 244
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 72/181 (39%), Positives = 113/181 (62%), Gaps = 4/181 (2%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
+ + + + + +++E++ ++TS+D L WAR SL + +G AC
Sbjct: 4 SPSISAVRDLREATCGPIGTP--EVTNELSE-NIILTSLDDLHNWARLSSLWPLLYGTAC 60
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
C +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI
Sbjct: 61 CFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVI 120
Query: 125 SMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 121 AMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGDESLA 180
Query: 184 K 184
+
Sbjct: 181 E 181
>gi|156598545|gb|ABU85530.1| NADH-plastoquinone oxidoreductase subunit K [Passiflora biflora]
Length = 237
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L WAR SL + +G +CC +E R+D +R+G PR
Sbjct: 14 SVLDRTTPISVISTTPNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 73
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 74 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 133
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD Y+PGCPP EA+I I L+KKI R
Sbjct: 134 DKLIPVDAYLPGCPPKPEAVIDAITKLRKKISRE 167
>gi|328950032|ref|YP_004367367.1| NAD(P)H-quinone oxidoreductase subunit K [Marinithermus
hydrothermalis DSM 14884]
gi|328450356|gb|AEB11257.1| NAD(P)H-quinone oxidoreductase subunit K [Marinithermus
hydrothermalis DSM 14884]
Length = 179
Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats.
Identities = 87/160 (54%), Positives = 117/160 (73%), Gaps = 2/160 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ F R E+ +G T++++LV W R+ SL TFGLACCA+EMM ++ R DL
Sbjct: 1 MGLTDLFERDVQELERQGVFFTTLEKLVAWGRSNSLWPATFGLACCAIEMMASTDARNDL 60
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++
Sbjct: 61 ARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN- 119
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+Y++V+ D +VPVD++VPGCPP EALIY ++ LQKKIR
Sbjct: 120 NYAIVQNVDSVVPVDVFVPGCPPRPEALIYAVMQLQKKIR 159
>gi|309322236|ref|YP_003934314.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa]
gi|197131360|gb|ACH47198.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa]
gi|300069329|gb|ADJ66449.1| NADH-plastoquinone oxidoreductase subunit K [Monsonia speciosa]
Length = 225
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T L T+ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRRTQNSVLSTTSTDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|149390544|ref|YP_001294188.1| NADH-plastoquinone oxidoreductase subunit K [Buxus microphylla]
gi|146762289|gb|ABQ45253.1| NADH-plastoquinone oxidoreductase subunit K [Buxus microphylla]
Length = 257
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 73/182 (40%), Positives = 110/182 (60%), Gaps = 2/182 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
+G+ V + +E V + T + T+ + L W+R SL +
Sbjct: 36 IGMVLVPDNNKKKEEKNYIEIVMNSIEFPLVDRTTQNSVISTTSNDLSNWSRLSSLWPLL 95
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
+G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE
Sbjct: 96 YGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 155
Query: 120 PRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
P+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KK+
Sbjct: 156 PKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKVS 215
Query: 179 RV 180
R
Sbjct: 216 RE 217
>gi|320161226|ref|YP_004174450.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein
[Anaerolinea thermophila UNI-1]
gi|319995079|dbj|BAJ63850.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein
[Anaerolinea thermophila UNI-1]
Length = 217
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 79/165 (47%), Positives = 117/165 (70%), Gaps = 2/165 (1%)
Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
E++ + I E+ ++ VT++D++ W+R SL M FGLACCA+EM+ + R+
Sbjct: 2 PNEELHSPGYEIPPEMQNQ-VTVTTLDRIYNWSRKNSLWPMMFGLACCAIEMIATAASRF 60
Query: 78 DLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
D RFG R SPRQ+DVMIV+GT+T KM + R+Y+QMPEP+YV++MG+CA+GGG +
Sbjct: 61 DFSRFGMEVMRPSPRQADVMIVSGTVTKKMVPQIVRLYNQMPEPKYVVAMGACASGGGPF 120
Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
Y+VV G D+ +PVD+Y+PGCPPT +AL+ G+++LQKK+ R
Sbjct: 121 KEGYNVVSGIDKFIPVDVYIPGCPPTPQALLNGLIMLQKKVERES 165
>gi|148241313|ref|YP_001226470.1| NADH dehydrogenase subunit B [Synechococcus sp. RCC307]
gi|218527933|sp|A5GQF8|NDHK_SYNR3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|147849623|emb|CAK27117.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. RCC307]
Length = 242
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 73/183 (39%), Positives = 116/183 (63%), Gaps = 4/183 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
++ + + + S V + ++++++ ++TS+D L WAR SL + +G
Sbjct: 1 MSDTSLDSMRDLRAASCGPVGSP--EVTTDLSE-NVILTSLDDLHNWARLSSLWPLLYGT 57
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
ACC +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+Y
Sbjct: 58 ACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKY 117
Query: 123 VISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 118 VIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGDEA 177
Query: 182 NVK 184
+
Sbjct: 178 IAE 180
>gi|109946844|ref|YP_664072.1| NADH dehydrogenase subunit B [Helicobacter acinonychis str. Sheeba]
gi|122973434|sp|Q17Z53|NUOB_HELAH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|109714065|emb|CAJ99073.1| NADH dehydrogenase I chain B [Helicobacter acinonychis str. Sheeba]
gi|317011461|gb|ADU85208.1| NADH dehydrogenase subunit B [Helicobacter pylori SouthAfrica7]
Length = 159
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 84/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI
Sbjct: 6 VVLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P
Sbjct: 66 IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIIPVDIYLP 124
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y +++LQ KIRR +K
Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151
>gi|196231863|ref|ZP_03130719.1| NADH-quinone oxidoreductase, B subunit [Chthoniobacter flavus
Ellin428]
gi|196223985|gb|EDY18499.1| NADH-quinone oxidoreductase, B subunit [Chthoniobacter flavus
Ellin428]
Length = 178
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 76/164 (46%), Positives = 109/164 (66%), Gaps = 2/164 (1%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+ ++T +D + W R SL M GLACCA+E+M A R+D+ R
Sbjct: 1 MPETSPVAYDSKIEGNVIITQLDAAMNWMRKNSLWPMPMGLACCAIELMAAGASRFDIAR 60
Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
FG R SPRQSDVMIVAGT+T KMA A++R++DQMPEP++ I+MG+CA+ GG Y SY
Sbjct: 61 FGAEVMRFSPRQSDVMIVAGTVTYKMALAVKRIWDQMPEPKWCIAMGACASSGGMYR-SY 119
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+V++G D+++PVD+Y+ GCPP EAL+ G++ LQ+KI ++
Sbjct: 120 AVLQGIDQLIPVDVYISGCPPRPEALLEGLMKLQRKIETEPALR 163
>gi|195953122|ref|YP_002121412.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobaculum sp.
Y04AAS1]
gi|238065161|sp|B4U8H3|NUOB_HYDS0 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|195932734|gb|ACG57434.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobaculum sp.
Y04AAS1]
Length = 177
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 84/156 (53%), Positives = 118/156 (75%), Gaps = 1/156 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
++S I GF+ T+VD+L++W R +L +T GLACCA+EMM A+ R+D++R G RA
Sbjct: 1 MASSINGNGFITTTVDELLSWGRRNALWPVTIGLACCAIEMMHAAASRFDIDRLGMIFRA 60
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPRQ+DV+IVAGT+ NK+A L+ V+DQMPEP++ ISMG CA+ GG + +YS ++G DR
Sbjct: 61 SPRQADVLIVAGTVVNKVAPMLKLVWDQMPEPKWCISMGGCASAGGPFP-TYSTLQGIDR 119
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
I+PVD+Y+PGCPPT + LIYG+L LQ+KIR +
Sbjct: 120 IIPVDVYIPGCPPTPQGLIYGLLELQRKIREKKVTR 155
>gi|53717370|ref|YP_105287.1| NADH dehydrogenase subunit B [Burkholderia mallei ATCC 23344]
gi|53720672|ref|YP_109658.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei K96243]
gi|67640239|ref|ZP_00439053.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
(ndh-1, chain b) [Burkholderia mallei GB8 horse 4]
gi|134283174|ref|ZP_01769875.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei 305]
gi|167004154|ref|ZP_02269924.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20]
gi|167721386|ref|ZP_02404622.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei DM98]
gi|167847462|ref|ZP_02472970.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei B7210]
gi|167904433|ref|ZP_02491638.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei NCTC 13177]
gi|242317299|ref|ZP_04816315.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei 1106b]
gi|254175821|ref|ZP_04882480.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
10399]
gi|254198551|ref|ZP_04904972.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei S13]
gi|254203254|ref|ZP_04909616.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH]
gi|254208590|ref|ZP_04914939.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU]
gi|81607694|sp|Q63QG0|NUOB2_BURPS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|81684518|sp|Q62DE1|NUOB2_BURMA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|218528073|sp|A1UWB1|NUOB2_BURMS RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|218528074|sp|A3NZQ8|NUOB2_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|218528076|sp|A3NE04|NUOB2_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|218528078|sp|A3MFR5|NUOB2_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|218528079|sp|A2RYJ4|NUOB2_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|52211086|emb|CAH37074.1| putative NADH dehydrogenase [Burkholderia pseudomallei K96243]
gi|52423340|gb|AAU46910.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
23344]
gi|134245369|gb|EBA45462.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei 305]
gi|147746299|gb|EDK53377.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei FMH]
gi|147751277|gb|EDK58345.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei JHU]
gi|160696864|gb|EDP86834.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei ATCC
10399]
gi|169655291|gb|EDS87984.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei S13]
gi|238520928|gb|EEP84384.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
(ndh-1, chain b) [Burkholderia mallei GB8 horse 4]
gi|242140538|gb|EES26940.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei 1106b]
gi|243060451|gb|EES42637.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei PRL-20]
Length = 167
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 107/151 (70%), Positives = 126/151 (83%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR
Sbjct: 7 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 66
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 67 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 126
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VD+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 127 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 157
>gi|121597251|ref|YP_990264.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1]
gi|254355774|ref|ZP_04972053.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei
2002721280]
gi|121225049|gb|ABM48580.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei SAVP1]
gi|148024745|gb|EDK82928.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei
2002721280]
Length = 293
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 107/151 (70%), Positives = 126/151 (83%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR
Sbjct: 133 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 192
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 193 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 252
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VD+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 253 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 283
>gi|309322102|ref|YP_003933918.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum]
gi|197131352|gb|ACH47194.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum]
gi|300069195|gb|ADJ66317.1| NADH-plastoquinone oxidoreductase subunit K [Erodium texanum]
Length = 227
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T L T+ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 ALLDRRTQNSVLSTTSKDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|269836326|ref|YP_003318554.1| NADH-quinone oxidoreductase, B subunit [Sphaerobacter thermophilus
DSM 20745]
gi|269785589|gb|ACZ37732.1| NADH-quinone oxidoreductase, B subunit [Sphaerobacter thermophilus
DSM 20745]
Length = 185
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 86/157 (54%), Positives = 118/157 (75%), Gaps = 2/157 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL-ERFGFAP 86
+ + + L T+VD + WAR SL W+ FGLACCA+EM+ A+MPR+DL ERFG
Sbjct: 2 GVIEDRFERNILTTTVDTVFNWARRSSLWWLQFGLACCAIEMISAAMPRFDLAERFGMLY 61
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+D+MIVAGT+T KMA +R++YDQM +P++VISMGSCAN GG + +Y+VV+G
Sbjct: 62 RASPRQADLMIVAGTVTKKMAPVVRQLYDQMADPKWVISMGSCANVGGPF-DTYAVVQGV 120
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
D+++PVD+YVPGCPP EAL YG+L LQ ++ + +
Sbjct: 121 DQVIPVDVYVPGCPPLPEALYYGVLELQNRVIKYDTI 157
>gi|87300572|ref|ZP_01083414.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 5701]
gi|87284443|gb|EAQ76395.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 5701]
Length = 253
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 73/177 (41%), Positives = 113/177 (63%), Gaps = 4/177 (2%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
+ + + + + V A ++S+++ ++TS+D L WAR SL + +G AC
Sbjct: 13 APSIEALRDLRASTCNPVGAPT--VTSDLSE-NVILTSLDDLHNWARLSSLWPLLYGTAC 69
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
C +E R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y+QMPEP+YVI
Sbjct: 70 CFIEFAALIGSRFDFDRFGLVPRSSPRQADLLITAGTVTMKMAPALVRLYEQMPEPKYVI 129
Query: 125 SMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 130 AMGACTITGGMFSADSTTAVRGVDKLIPVDLYIPGCPPRPEAIFDAVIKLRKKVGNE 186
>gi|325996536|gb|ADZ51941.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 2018]
gi|325998125|gb|ADZ50333.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 2017]
Length = 159
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 85/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI
Sbjct: 6 VILSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+P
Sbjct: 66 IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLP 124
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y +++LQ KIRR +K
Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151
>gi|237752491|ref|ZP_04582971.1| NADH dehydrogenase subunit B [Helicobacter winghamensis ATCC
BAA-430]
gi|229375980|gb|EEO26071.1| NADH dehydrogenase subunit B [Helicobacter winghamensis ATCC
BAA-430]
Length = 176
Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats.
Identities = 86/147 (58%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+TSVD+L+ W R+ SL MT+GLACCA+EMM RYD +RFG RASPRQSDVMI
Sbjct: 23 IALTSVDKLLNWGRSNSLWAMTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQSDVMI 82
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGT+T K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P
Sbjct: 83 IAGTVTKKHAQFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 141
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y +++LQ+KIR+ +
Sbjct: 142 GCSPRPETLQYALMVLQQKIRKQKASR 168
>gi|313679586|ref|YP_004057325.1| NADH dehydrogenase subunit b [Oceanithermus profundus DSM 14977]
gi|313152301|gb|ADR36152.1| NADH dehydrogenase subunit B [Oceanithermus profundus DSM 14977]
Length = 179
Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 87/160 (54%), Positives = 117/160 (73%), Gaps = 2/160 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ F R E+ +G L T++++LV W R+ SL +TFGLACCA+EMM +S R DL
Sbjct: 1 MGLKDLFERDVQELEREGILFTTLEKLVAWGRSNSLWPVTFGLACCAIEMMASSNARNDL 60
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG RASPRQ+DVMIVAG L+ KMA +RRVYDQM +P++VI+MG+CA GG ++
Sbjct: 61 SRFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMGDPKWVIAMGACAASGGMFN- 119
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+Y++V+ + +VPVD+YVPGCPP EALIY ++ LQKKIR
Sbjct: 120 NYAIVQSVESVVPVDVYVPGCPPRPEALIYAVMQLQKKIR 159
>gi|32267101|ref|NP_861133.1| NADH dehydrogenase subunit B [Helicobacter hepaticus ATCC 51449]
gi|81665416|sp|Q7VFS3|NUOB_HELHP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|32263153|gb|AAP78199.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449]
Length = 169
Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 84/146 (57%), Positives = 115/146 (78%), Gaps = 1/146 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+++SVD+L+ W+R+ SL +T+GLACCA+EMM R+DL+RFG RASPRQSD+MI
Sbjct: 16 IVLSSVDKLLNWSRSNSLWGVTYGLACCAIEMMATGGSRFDLDRFGSIFRASPRQSDLMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
++GT+T K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P
Sbjct: 76 ISGTVTKKHAEFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
GC P E L Y I++LQ+KIRR +
Sbjct: 135 GCAPRPETLQYAIMVLQQKIRRQKAL 160
>gi|218527934|sp|A9QC82|NDHK_TRACE RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|156598845|gb|ABU85675.1| NADH-plastoquinone oxidoreductase subunit K [Trachelium caeruleum]
Length = 227
Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
T + T+ ++L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+
Sbjct: 13 TQNSVISTTPNELSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQA 72
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPV 152
D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PV
Sbjct: 73 DLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLLPV 132
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+Y+PGCPP EA+I I L+KKI R
Sbjct: 133 DVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|309322179|ref|YP_003934094.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum]
gi|197131358|gb|ACH47197.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum]
gi|300069272|gb|ADJ66393.1| NADH-plastoquinone oxidoreductase subunit K [Geranium palmatum]
Length = 225
Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T L T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 AVLDRRTQNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|116071575|ref|ZP_01468843.1| NADH dehydrogenase beta subunit [Synechococcus sp. BL107]
gi|116065198|gb|EAU70956.1| NADH dehydrogenase beta subunit [Synechococcus sp. BL107]
Length = 244
Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 72/181 (39%), Positives = 113/181 (62%), Gaps = 4/181 (2%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
+ + + + + +++E++ ++TS+D L WAR SL + +G AC
Sbjct: 4 SPSISAVRDLREATCGPIGTP--AVTNELSE-NIILTSLDDLHNWARLSSLWPLLYGTAC 60
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
C +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI
Sbjct: 61 CFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVI 120
Query: 125 SMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 121 AMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGDESLA 180
Query: 184 K 184
+
Sbjct: 181 E 181
>gi|16126198|ref|NP_420762.1| NADH dehydrogenase subunit B [Caulobacter crescentus CB15]
gi|81621086|sp|Q9A6X1|NUOB_CAUCR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|13423414|gb|AAK23930.1| NADH dehydrogenase I, B subunit [Caulobacter crescentus CB15]
Length = 193
Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 133/162 (82%), Positives = 147/162 (90%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D F +S ++ KGF+ + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+
Sbjct: 31 DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 90
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV
Sbjct: 91 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 150
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++
Sbjct: 151 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 192
>gi|221234969|ref|YP_002517405.1| NADH dehydrogenase subunit B [Caulobacter crescentus NA1000]
gi|238055282|sp|B8GWV5|NUOB_CAUCN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|220964141|gb|ACL95497.1| NADH-quinone oxidoreductase chain B [Caulobacter crescentus NA1000]
Length = 200
Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 133/162 (82%), Positives = 147/162 (90%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D F +S ++ KGF+ + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+
Sbjct: 38 DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 97
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV
Sbjct: 98 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 157
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++
Sbjct: 158 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 199
>gi|223937077|ref|ZP_03628985.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514]
gi|223894358|gb|EEF60811.1| NADH-quinone oxidoreductase, B subunit [bacterium Ellin514]
Length = 169
Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 107/151 (70%), Gaps = 2/151 (1%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
+VT VD + W R SL M GLACCA+E+M A RYD+ RFG R SPRQ
Sbjct: 13 VEGDVIVTRVDAALNWFRKNSLWPMPMGLACCAIELMAAGASRYDIARFGSEVMRFSPRQ 72
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
SDVM+VAGT+T KMA A++R+YDQMPEP++VI+MG+CA+ GG Y SY+V++G DRI+PV
Sbjct: 73 SDVMVVAGTVTYKMAMAVKRIYDQMPEPKWVIAMGACASTGGMYR-SYAVLQGVDRIIPV 131
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
D+YV GCPP EAL+ ++ LQ K+ + +
Sbjct: 132 DVYVAGCPPRPEALLDALIKLQNKVSKEPTL 162
>gi|297625190|ref|YP_003706624.1| NADH-quinone oxidoreductase subunit B [Truepera radiovictrix DSM
17093]
gi|297166370|gb|ADI16081.1| NADH-quinone oxidoreductase, B subunit [Truepera radiovictrix DSM
17093]
Length = 178
Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats.
Identities = 85/162 (52%), Positives = 120/162 (74%), Gaps = 2/162 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ F + E+ ++G L +++ +LV W R+ SL TFGLACCA+EMMQ++ R+DL
Sbjct: 1 MALKDLFEKDVQELENEGILFSTLSKLVAWGRSNSLWPATFGLACCAIEMMQSTNARHDL 60
Query: 80 ERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++
Sbjct: 61 SRFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN- 119
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+Y++V+ D +VPVD++VPGCPP EAL+Y ++ LQKK+R
Sbjct: 120 NYAIVQNVDSVVPVDVFVPGCPPRPEALVYAVMQLQKKVRGE 161
>gi|124382496|ref|YP_001024763.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
10229]
gi|126447059|ref|YP_001079101.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
10247]
gi|124290516|gb|ABM99785.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
10229]
gi|126239913|gb|ABO03025.1| NADH-quinone oxidoreductase, B subunit [Burkholderia mallei NCTC
10247]
Length = 322
Score = 212 bits (539), Expect = 3e-53, Method: Composition-based stats.
Identities = 107/151 (70%), Positives = 126/151 (83%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR
Sbjct: 162 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 221
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 222 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 281
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VD+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 282 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 312
>gi|313183997|ref|YP_004021154.1| NADH-plastoquinone oxidoreductase subunit K [Castanea mollissima]
gi|309321524|gb|ADO65064.1| NADH-plastoquinone oxidoreductase subunit K [Castanea mollissima]
Length = 255
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 67/150 (44%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR
Sbjct: 38 APQKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 97
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIV 150
Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ VRG D+++
Sbjct: 98 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLI 157
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 158 PVDVYLPGCPPKPEAVIDAITKLRKKLSRE 187
>gi|218527896|sp|B2XWK8|NDHK_FAGEA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
Length = 225
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 70/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
IT + T+ + L W+R SL + +G +CC +E R+D +R+G PR+SP
Sbjct: 10 DRITPNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSP 69
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRI 149
RQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D++
Sbjct: 70 RQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKL 129
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+PVD+Y+PGCPP EA+I I L+KKI
Sbjct: 130 IPVDVYLPGCPPKPEAVIDAITKLRKKIS 158
>gi|208435155|ref|YP_002266821.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori G27]
gi|210135420|ref|YP_002301859.1| NADH dehydrogenase subunit B [Helicobacter pylori P12]
gi|217032322|ref|ZP_03437818.1| hypothetical protein HPB128_132g20 [Helicobacter pylori B128]
gi|254779804|ref|YP_003057910.1| NADH dehydrogenase subunit B [Helicobacter pylori B38]
gi|298735715|ref|YP_003728240.1| NADH dehydrogenase I subunit B [Helicobacter pylori B8]
gi|308183371|ref|YP_003927498.1| NADH dehydrogenase subunit B [Helicobacter pylori PeCan4]
gi|308185009|ref|YP_003929142.1| NADH dehydrogenase subunit B [Helicobacter pylori SJM180]
gi|238065158|sp|B6JNA1|NUOB_HELP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065159|sp|B5Z8Q6|NUOB_HELPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|208433084|gb|ACI27955.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori G27]
gi|210133388|gb|ACJ08379.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori P12]
gi|216945988|gb|EEC24602.1| hypothetical protein HPB128_132g20 [Helicobacter pylori B128]
gi|254001716|emb|CAX29947.1| NADH-ubiquinone oxidoreductase, NQO6 subunit [Helicobacter pylori
B38]
gi|261838584|gb|ACX98350.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 51]
gi|261839979|gb|ACX99744.1| NADH dehydrogenase subunit B [Helicobacter pylori 52]
gi|298354904|emb|CBI65776.1| NADH dehydrogenase I chain B [Helicobacter pylori B8]
gi|308060929|gb|ADO02825.1| NADH dehydrogenase subunit B [Helicobacter pylori SJM180]
gi|308065556|gb|ADO07448.1| NADH dehydrogenase subunit B [Helicobacter pylori PeCan4]
gi|317013049|gb|ADU83657.1| NADH dehydrogenase subunit B [Helicobacter pylori Lithuania75]
gi|317014652|gb|ADU82088.1| NADH dehydrogenase subunit B [Helicobacter pylori Gambia94/24]
Length = 159
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 85/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI
Sbjct: 6 VVLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+P
Sbjct: 66 IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLP 124
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y +++LQ KIRR +K
Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151
>gi|15612247|ref|NP_223900.1| NADH dehydrogenase subunit B [Helicobacter pylori J99]
gi|81625872|sp|Q9ZJW6|NUOB_HELPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|4155792|gb|AAD06768.1| NADH oxidoreductase I [Helicobacter pylori J99]
gi|308064039|gb|ADO05926.1| NADH dehydrogenase subunit B [Helicobacter pylori Sat464]
Length = 159
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 84/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI
Sbjct: 6 VILSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR+VPVDIY+P
Sbjct: 66 IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRVVPVDIYLP 124
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y +++LQ KIRR +K
Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151
>gi|126442009|ref|YP_001060575.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei 668]
gi|126221502|gb|ABN85008.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei 668]
Length = 297
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 107/151 (70%), Positives = 126/151 (83%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR
Sbjct: 137 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 196
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVP
Sbjct: 197 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVP 256
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VD+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 257 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 287
>gi|88808082|ref|ZP_01123593.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 7805]
gi|88788121|gb|EAR19277.1| NADH dehydrogenase beta subunit [Synechococcus sp. WH 7805]
Length = 248
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 3/185 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITH--KGFLVTSVDQLVTWARTGSLMWM 58
M T + + + S V + + ++TS+D L WAR SL +
Sbjct: 1 MAGDTPSIQALRDLREASCGPVAGAADGAPTVTQDLSENVILTSLDDLHNWARLSSLWPL 60
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
+G ACC +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMP
Sbjct: 61 LYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMP 120
Query: 119 EPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP+YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 121 EPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 180
Query: 178 RRVGN 182
Sbjct: 181 ANESV 185
>gi|332255974|ref|XP_003277096.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,
mitochondrial-like [Nomascus leucogenys]
Length = 156
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 108/132 (81%), Positives = 118/132 (89%)
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 20 SSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRK 79
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PGCPPTAEAL+YGIL
Sbjct: 80 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQ 139
Query: 173 LQKKIRRVGNVK 184
LQ+KI+R ++
Sbjct: 140 LQRKIKRERRLQ 151
>gi|197131362|gb|ACH47199.1| NADH-plastoquinone oxidoreductase subunit K [Sarcocaulon
vanderietiae]
Length = 213
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T L T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 PLLDRRTQNSVLSTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKIARE 160
>gi|197131354|gb|ACH47195.1| NADH-plastoquinone oxidoreductase subunit K [Geranium carolinianum]
Length = 225
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T L T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 7 ALLDRRTPNSVLSTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 67 SSPRQADLVLTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 127 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISRE 160
>gi|119897120|ref|YP_932333.1| NADH-quinone oxidoreductase subunit B [Azoarcus sp. BH72]
gi|218527969|sp|A1K3P1|NUOB2_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|119669533|emb|CAL93446.1| conserved hypothetical NADH-quinone oxidoreductase chain B
[Azoarcus sp. BH72]
Length = 159
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 105/152 (69%), Positives = 128/152 (84%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ GFL+T +D L R+ S+ ++TFGLACCAVEMMQA+ RYD++RFG PRASPR
Sbjct: 5 TLHGDGFLLTRLDTLCDMVRSNSMWYLTFGLACCAVEMMQAAASRYDMDRFGMIPRASPR 64
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q+D++IVAGTLTNKMA A+R++YDQM EPRYVISMGSCANGGGYYHYSYSV RGCDRI+P
Sbjct: 65 QADLIIVAGTLTNKMAPAIRKIYDQMAEPRYVISMGSCANGGGYYHYSYSVARGCDRILP 124
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VDIY+PGCPPTAEAL+YG++ LQ K++R V
Sbjct: 125 VDIYIPGCPPTAEALLYGLIQLQNKLKRPPAV 156
>gi|295689628|ref|YP_003593321.1| NADH-quinone oxidoreductase subunit B [Caulobacter segnis ATCC
21756]
gi|295431531|gb|ADG10703.1| NADH-quinone oxidoreductase, B subunit [Caulobacter segnis ATCC
21756]
Length = 192
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 133/162 (82%), Positives = 147/162 (90%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D F +S ++ KGF+ + D L+TWARTGSLMWMTFGLACCAVEMMQASMPRYDLER+
Sbjct: 30 DPFFDGVSQQLADKGFITAAADDLITWARTGSLMWMTFGLACCAVEMMQASMPRYDLERY 89
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV
Sbjct: 90 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 149
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VRGCDR+VPVDIYVPGCPPTAEAL+YG+L LQKKIRR G ++
Sbjct: 150 VRGCDRVVPVDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 191
>gi|226355360|ref|YP_002785100.1| NADH dehydrogenase subunit B [Deinococcus deserti VCD115]
gi|259514659|sp|C1D0H2|NUOB_DEIDV RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|226317350|gb|ACO45346.1| putative NADH dehydrogenase (quinone), subunit B (NADH-quinone
oxidoreductase, subunit B) [Deinococcus deserti VCD115]
Length = 178
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 86/162 (53%), Positives = 118/162 (72%), Gaps = 2/162 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ F R E+ +G L +++++LV W R+ SL TFGLACCA+EMM ++ R D+
Sbjct: 1 MALKELFDRDWQELESEGILFSNLEKLVAWGRSNSLWPATFGLACCAIEMMSSTNARNDM 60
Query: 80 ERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VI+MG+CA+ GG ++
Sbjct: 61 ARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVIAMGACASSGGMFN- 119
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+Y++V+ D +VPVDIYVPGCPP EALIY ++ LQKK+R
Sbjct: 120 NYAIVQNVDSVVPVDIYVPGCPPRPEALIYAVMQLQKKVRGE 161
>gi|116515039|ref|YP_802668.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|122285565|sp|Q057X4|NUOB_BUCCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|116256893|gb|ABJ90575.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Cc (Cinara
cedri)]
Length = 225
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 82/183 (44%), Positives = 106/183 (57%), Gaps = 4/183 (2%)
Query: 3 LTTVNQ--KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
LT VN I SL+K + G + + ++ W R SL F
Sbjct: 5 LTRVNTKNSISKKYPLRSLKKTSDPIKKQIKNNIFFGTISKYMQYIMNWGRKNSLWPYNF 64
Query: 61 GLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
GL+CC VEM+ A +D+ RFG R SPRQ+D M++AGT KMA ++R+YD M E
Sbjct: 65 GLSCCYVEMVSAFTSIHDISRFGSEVLRTSPRQADFMVIAGTPFIKMAPVIQRLYDLMLE 124
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMGSCAN GG Y YSVV+G D+ +PVDIY+PGCPP EA I+ I LLQK I +
Sbjct: 125 PKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYIHAITLLQKAISK 183
Query: 180 VGN 182
Sbjct: 184 ERR 186
>gi|75286712|sp|Q5SD03|NDHK_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|50659999|gb|AAT80721.1| NADH-plastoquinone oxidoreductase subunit K [Huperzia lucidula]
Length = 263
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 69/155 (44%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
S + + T ++T+ + WAR SL + +G +CC +E R D +R+G P
Sbjct: 27 SSLLDKTTSNSIVLTTFNDFSNWARLSSLWPLLYGTSCCFIESASLIGSRSDSDRYGLVP 86
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 87 RSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 146
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+ +PVD+Y+PGCPP EA+I I+ L+K++ +
Sbjct: 147 VDKPIPVDVYLPGCPPKPEAIIDAIVKLRKRVAQE 181
>gi|254432198|ref|ZP_05045901.1| NADH dehydrogenase i chain b or ndhk [Cyanobium sp. PCC 7001]
gi|197626651|gb|EDY39210.1| NADH dehydrogenase i chain b or ndhk [Cyanobium sp. PCC 7001]
Length = 279
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 77/190 (40%), Positives = 117/190 (61%), Gaps = 11/190 (5%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADF---------SRISSEITHKGFLVTSVDQLVTWAR 51
M LT + SS S++ + ++S+++ ++T++D L WAR
Sbjct: 1 MELTDPTMTLTPSSSSPSIDALRDVRAASCGPVGSPAVTSDLSE-NVILTTLDDLHNWAR 59
Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
SL + +G ACC +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL
Sbjct: 60 LSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALV 119
Query: 112 RVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
R+Y+QMPEP+YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ +
Sbjct: 120 RLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAV 179
Query: 171 LLLQKKIRRV 180
+ L+KK+
Sbjct: 180 IKLRKKVGNE 189
>gi|154795234|ref|YP_209525.2| NADH dehydrogenase subunit K [Huperzia lucidula]
Length = 242
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 69/155 (44%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
S + + T ++T+ + WAR SL + +G +CC +E R D +R+G P
Sbjct: 6 SSLLDKTTSNSIVLTTFNDFSNWARLSSLWPLLYGTSCCFIESASLIGSRSDSDRYGLVP 65
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
R+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 66 RSSPRQADLVITAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRG 125
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+ +PVD+Y+PGCPP EA+I I+ L+K++ +
Sbjct: 126 VDKPIPVDVYLPGCPPKPEAIIDAIVKLRKRVAQE 160
>gi|148238589|ref|YP_001223976.1| NADH dehydrogenase subunit B [Synechococcus sp. WH 7803]
gi|218527932|sp|A5GIB4|NDHK_SYNPW RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|147847128|emb|CAK22679.1| NAD(P)H-quinone oxidoreductase subunit K [Synechococcus sp. WH
7803]
Length = 248
Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats.
Identities = 74/185 (40%), Positives = 110/185 (59%), Gaps = 3/185 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITH--KGFLVTSVDQLVTWARTGSLMWM 58
M + + + + S V + + ++TS+D L WAR SL +
Sbjct: 1 MAGESPSIQALRDLREASCGPVAGAADGAPTVTQDLSENVILTSLDDLHNWARLSSLWPL 60
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
+G ACC +E R+D +RFG PR+SPRQ+D++IVAGT+T KMA AL R+Y+QMP
Sbjct: 61 LYGTACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMP 120
Query: 119 EPRYVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP+YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 121 EPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYMPGCPPRPEAIFDAVIKLRKKV 180
Query: 178 RRVGN 182
Sbjct: 181 ANESV 185
>gi|189218226|ref|YP_001938868.1| NADH dehydrogenase subunit B [Methylacidiphilum infernorum V4]
gi|238065168|sp|B3DXN5|NUOB_METI4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|189185084|gb|ACD82269.1| NADH:ubiquinone oxidoreductase 20 kD subunit or related Fe-S
oxidoreductase [Methylacidiphilum infernorum V4]
Length = 170
Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats.
Identities = 76/155 (49%), Positives = 111/155 (71%), Gaps = 2/155 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+ +VT +D + W R SL M GLACCA+E+M ++ R+D+ RFG R S
Sbjct: 10 NSPIEGDVVVTRLDAAINWMRKNSLWPMPMGLACCAIELMASACARFDISRFGAEVMRFS 69
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ DVMIVAGT+T KMA +++R+Y+QMP+P++VISMG+CA+ GG Y SYSV++G D++
Sbjct: 70 PRQCDVMIVAGTVTYKMAYSVKRIYEQMPDPKWVISMGACASSGGMYR-SYSVLQGIDQL 128
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PVD+YV GCPP EAL+ ++ LQ+KI + +++
Sbjct: 129 IPVDVYVSGCPPRPEALLDALIKLQEKIDKEASLR 163
>gi|326800573|ref|YP_004318392.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21]
gi|326551337|gb|ADZ79722.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21]
Length = 163
Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats.
Identities = 87/155 (56%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
+S T G +V +D L+ WAR S+ ++FG+ACCA+EMM A YDL+R+G PRAS
Sbjct: 3 TSTQTDSGIVVAKLDDLLNWARLSSMWPVSFGIACCAIEMMGAMAATYDLDRYGVFPRAS 62
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGCDR 148
PRQ+DV+I+AGT+T KMA +R +Y+QMPEP+YVISMGSC+N GG Y + Y VV+G D+
Sbjct: 63 PRQADVIIIAGTVTFKMADRIRLLYEQMPEPKYVISMGSCSNCGGPYWQHGYHVVKGVDK 122
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
I+PVDIYV GCPP EALI L LQKKI +
Sbjct: 123 IIPVDIYVQGCPPRPEALIGAFLELQKKIGSEHII 157
>gi|322378681|ref|ZP_08053114.1| Donor-ubiquinone reductase I [Helicobacter suis HS1]
gi|322380176|ref|ZP_08054411.1| NADH dehydrogenase subunit B [Helicobacter suis HS5]
gi|321147391|gb|EFX42056.1| NADH dehydrogenase subunit B [Helicobacter suis HS5]
gi|321148898|gb|EFX43365.1| Donor-ubiquinone reductase I [Helicobacter suis HS1]
Length = 196
Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats.
Identities = 83/146 (56%), Positives = 110/146 (75%), Gaps = 1/146 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++S+D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI
Sbjct: 43 IALSSLDRLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 102
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTLT K A RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+P
Sbjct: 103 IAGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLP 161
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
GC P E L Y +++LQ KIRR +
Sbjct: 162 GCAPRPETLQYALMVLQDKIRRQKAL 187
>gi|256371181|ref|YP_003109005.1| NADH-quinone oxidoreductase, B subunit [Acidimicrobium ferrooxidans
DSM 10331]
gi|256007765|gb|ACU53332.1| NADH-quinone oxidoreductase, B subunit [Acidimicrobium ferrooxidans
DSM 10331]
Length = 180
Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats.
Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
FL ++ LV WAR S+ TFGLACCA+EMM A +DL RFG RASPRQ+D+
Sbjct: 9 NFLTARLEDLVNWARKSSVWPATFGLACCAIEMMAAGAADFDLARFGMEVFRASPRQADL 68
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIVAG ++ KMA LR+VYDQMPEP++VISMG CA+ GG ++ +Y++V+G D IVPVD+Y
Sbjct: 69 MIVAGRVSQKMAPVLRQVYDQMPEPKWVISMGVCASSGGMFN-NYAIVQGVDEIVPVDVY 127
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
PGCPP E LI IL L +KIR ++
Sbjct: 128 APGCPPGPETLIRAILTLHEKIRHTPILR 156
>gi|294056096|ref|YP_003549754.1| NADH-quinone oxidoreductase, B subunit [Coraliomargarita
akajimensis DSM 45221]
gi|293615429|gb|ADE55584.1| NADH-quinone oxidoreductase, B subunit [Coraliomargarita
akajimensis DSM 45221]
Length = 183
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 77/155 (49%), Positives = 103/155 (66%), Gaps = 2/155 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+VT D ++ W R S+ M GLACCA+E+M A R+D+ RFG R S
Sbjct: 11 DSKVEGEVIVTQADAVINWIRKHSVWPMPMGLACCAIELMAAGGSRFDISRFGMEVMRFS 70
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D MIVAGT+T KMA +RR+Y+QM EP++V++MG+CA+ GG Y SYS ++G DRI
Sbjct: 71 PRQADCMIVAGTVTYKMAEVVRRIYEQMAEPKWVVAMGACASSGGMYR-SYSTLQGVDRI 129
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VPVD+Y+ GCPP EAL+ ++ LQ KI R K
Sbjct: 130 VPVDVYISGCPPRPEALLDAMIKLQDKIGRERAFK 164
>gi|326567954|gb|EGE18051.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC1]
gi|326577449|gb|EGE27333.1| NADH dehydrogenase subunit B [Moraxella catarrhalis O35E]
Length = 223
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 85/185 (45%), Positives = 106/185 (57%), Gaps = 11/185 (5%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58
LT NQ S E +D I+ K + + L W R SL
Sbjct: 5 LTKPNQH-TKQYPQQSREIIDD----ITQAEVDKNVFLGRLSDLTHNLANWGRKNSLWPF 59
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
FG +CC VE +DL RFG RASPRQ+DVMIVAGT KMA + R+Y+QM
Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVILRLYEQM 119
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI I+LLQ+ I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKILPVDVYVPGCPPRPEALIQAIMLLQESI 178
Query: 178 RRVGN 182
++
Sbjct: 179 QKERR 183
>gi|290489744|gb|ADD31256.1| NADH-plastoquinone oxidoreductase subunit K protein [Quercus nigra]
Length = 230
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 67/150 (44%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPR
Sbjct: 13 APQKNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPR 72
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIV 150
Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SY+ VRG D+++
Sbjct: 73 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYTTVRGVDKLI 132
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 133 PVDVYLPGCPPKPEAVIDAITKLRKKLSRE 162
>gi|15645875|ref|NP_208053.1| NADH dehydrogenase subunit B [Helicobacter pylori 26695]
gi|108563630|ref|YP_627946.1| NADH dehydrogenase subunit B [Helicobacter pylori HPAG1]
gi|188528050|ref|YP_001910737.1| NADH dehydrogenase subunit B [Helicobacter pylori Shi470]
gi|207091614|ref|ZP_03239401.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_AG0C1]
gi|207108182|ref|ZP_03242344.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_CA4C1]
gi|217033582|ref|ZP_03439010.1| hypothetical protein HP9810_899g18 [Helicobacter pylori 98-10]
gi|81555857|sp|O25851|NUOB_HELPY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|123073732|sp|Q1CS00|NUOB_HELPH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065160|sp|B2UV25|NUOB_HELPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|2314428|gb|AAD08307.1| NADH-ubiquinone oxidoreductase, NQO6 subunit (NQO6) [Helicobacter
pylori 26695]
gi|107837403|gb|ABF85272.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori HPAG1]
gi|188144290|gb|ACD48707.1| NADH dehydrogenase subunit B [Helicobacter pylori Shi470]
gi|216943928|gb|EEC23362.1| hypothetical protein HP9810_899g18 [Helicobacter pylori 98-10]
gi|297380441|gb|ADI35328.1| NADH-quinone oxidoreductase, B subunit [Helicobacter pylori v225d]
gi|308062545|gb|ADO04433.1| NADH dehydrogenase subunit B [Helicobacter pylori Cuz20]
gi|315587152|gb|ADU41533.1| NADH-quinone oxidoreductase subunit B [Helicobacter pylori 35A]
gi|317009945|gb|ADU80525.1| NADH dehydrogenase subunit B [Helicobacter pylori India7]
gi|317178004|dbj|BAJ55793.1| NADH dehydrogenase subunit B [Helicobacter pylori F16]
gi|317178445|dbj|BAJ56233.1| NADH dehydrogenase subunit B [Helicobacter pylori F30]
gi|317180987|dbj|BAJ58773.1| NADH dehydrogenase subunit B [Helicobacter pylori F32]
gi|317182510|dbj|BAJ60294.1| NADH dehydrogenase subunit B [Helicobacter pylori F57]
gi|332674064|gb|AEE70881.1| NADH-quinone oxidoreductase subunit B [Helicobacter pylori 83]
Length = 159
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 84/147 (57%), Positives = 113/147 (76%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+++++D+L+ W R+ SL +T+GLACCA+EMM R+D +RFG RASPRQSDVMI
Sbjct: 6 VVLSTLDKLLNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DR+VPVDIY+P
Sbjct: 66 IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRVVPVDIYLP 124
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y +++LQ KIRR +K
Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151
>gi|298373133|ref|ZP_06983123.1| NADH dehydrogenase I, B subunit [Bacteroidetes oral taxon 274 str.
F0058]
gi|298276037|gb|EFI17588.1| NADH dehydrogenase I, B subunit [Bacteroidetes oral taxon 274 str.
F0058]
Length = 204
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 69/161 (42%), Positives = 102/161 (63%), Gaps = 3/161 (1%)
Query: 21 KVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
K + + ++ G + +D ++ W R+ S+ +TF +CC +E M R+D
Sbjct: 17 KDNEYLEQYVEQLREGGVNVAIAKLDDIINWGRSNSVWPLTFATSCCGIEFMSLGAARFD 76
Query: 79 LERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
RFG+ R SPRQ+DV+ GT+ +KMA L+R+YDQM EP+YVI++G CA GG +
Sbjct: 77 FSRFGWEVTRNSPRQADVVFCFGTIVHKMAPVLKRLYDQMSEPKYVIAVGGCAISGGPFK 136
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
SY V G D+I+PVD+YVPGCPP+ A+IYG+L L +KI+
Sbjct: 137 KSYHTVMGIDQIIPVDVYVPGCPPSPNAIIYGMLQLSRKIK 177
>gi|255961387|ref|YP_003097580.1| NADH dehydrogenase 27 kDa subunit [Dendrocalamus latiflorus]
gi|255040264|gb|ACT99924.1| NADH dehydrogenase 27 kDa subunit [Dendrocalamus latiflorus]
Length = 246
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + + T+ + L W++ SL + +G +CC +E R+D +R+G+ P+
Sbjct: 28 PLLDQTSSNSVISTTPNDLSNWSKLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGWVPK 87
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+++++ AGT T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 88 SSPRQANLILTAGTETMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 147
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 148 DKLIPVDVYLPGCPPKPEAVIDALTKLRKKISRE 181
>gi|77917822|ref|YP_355637.1| trifunctional NADH dehydrogenase I subunit B/C/D [Pelobacter
carbinolicus DSM 2380]
gi|123575097|sp|Q3A825|NUBCD_PELCD RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
Full=NADH dehydrogenase I subunit B/C/D; AltName:
Full=NDH-1 subunit B/C/D
gi|77543905|gb|ABA87467.1| NADH dehydrogenase subunit B / NADH dehydrogenase subunit D / NADH
dehydrogenase subunit C [Pelobacter carbinolicus DSM
2380]
Length = 794
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 109/153 (71%), Gaps = 2/153 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
SE K ++T++D + W R S+ M FGL+CC VEMM + PR+DL RFG R +
Sbjct: 2 SESIPKNIILTTLDDAINWGRKNSMWPMFFGLSCCFVEMMGSMTPRFDLARFGAEVLRGT 61
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PR++D+M++AGT KMA+++ RVY++M P++VI+MGSCAN GG Y YSV++G +++
Sbjct: 62 PREADLMVIAGTPFKKMAASMLRVYEEMANPKWVIAMGSCANSGGMY-DVYSVMQGVNQV 120
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
+PVD+Y+PGCPP EA + G++ LQ+KI R +
Sbjct: 121 LPVDVYIPGCPPRPEAFMQGLMTLQEKIARKES 153
>gi|11304|emb|CAA45612.1| ndhK [Glycine max]
Length = 224
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 67/154 (43%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 4 PLLDQTTKNSVISTTLIDLSNWSRLPSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 63
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ GT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 64 SSPRQADLILTVGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 123
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCP EA+I I L+K+I R
Sbjct: 124 DKLIPVDVYLPGCPTKPEAIIDAITKLRKEISRE 157
>gi|268678781|ref|YP_003303212.1| NADH-quinone oxidoreductase subunit beta [Sulfurospirillum
deleyianum DSM 6946]
gi|268616812|gb|ACZ11177.1| NADH-quinone oxidoreductase, B subunit [Sulfurospirillum deleyianum
DSM 6946]
Length = 169
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 85/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+T+VD+LV W R+ SL +T+GLACCA+EMM RYD +RFG RASPRQ+DV++
Sbjct: 16 VALTTVDKLVQWGRSNSLWPLTYGLACCAIEMMATGASRYDFDRFGTIFRASPRQADVIV 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTLT K A +RR+YDQMP+P++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+P
Sbjct: 76 IAGTLTKKHAPFMRRLYDQMPDPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y ++LLQKKIR +
Sbjct: 135 GCAPRPETLQYALMLLQKKIRTEKASR 161
>gi|152990038|ref|YP_001355760.1| NADH dehydrogenase subunit B [Nitratiruptor sp. SB155-2]
gi|238065184|sp|A6Q1P4|NUOB_NITSB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|151421899|dbj|BAF69403.1| NADH-quinone oxidoreductase, chain B [Nitratiruptor sp. SB155-2]
Length = 169
Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats.
Identities = 87/147 (59%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+T+VD+LV W RT SL +T+GLACCA+EMM + RYD +RFG RASPRQSDVMI
Sbjct: 16 VALTTVDKLVNWGRTNSLWVLTYGLACCAIEMMASGASRYDFDRFGVIFRASPRQSDVMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLT K A +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DR++PVDIY+P
Sbjct: 76 VAGTLTKKHAEFIRRLYDQMAEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDIYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y ++LLQKK+R+ +
Sbjct: 135 GCAPRPETLQYAVMLLQKKLRKRSIFQ 161
>gi|189162275|ref|YP_001936521.1| NADH dehydrogenase subunit K [Fagopyrum esculentum subsp.
ancestrale]
gi|166065361|gb|ABY79736.1| NADH dehydrogenase subunit K [Fagopyrum esculentum subsp.
ancestrale]
Length = 285
Score = 211 bits (536), Expect = 4e-53, Method: Composition-based stats.
Identities = 73/183 (39%), Positives = 113/183 (61%), Gaps = 5/183 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRIS----SEITHKGFLVTSVDQLVTWARTGSLM 56
+G+ V++ + K++ + + IT + T+ + L W+R SL
Sbjct: 36 IGMVLVSKYFNNQNKKRKNNKIERVLNSVEFLPLDRITPNSVISTTSNDLSNWSRLSSLW 95
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
+ +G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+Q
Sbjct: 96 PLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQ 155
Query: 117 MPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
MPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+K
Sbjct: 156 MPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRK 215
Query: 176 KIR 178
KI
Sbjct: 216 KIS 218
>gi|296112931|ref|YP_003626869.1| NADH-quinone oxidoreductase subunit B [Moraxella catarrhalis RH4]
gi|295920625|gb|ADG60976.1| NADH-quinone oxidoreductase subunit B [Moraxella catarrhalis RH4]
gi|326561154|gb|EGE11519.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 7169]
Length = 223
Score = 211 bits (536), Expect = 4e-53, Method: Composition-based stats.
Identities = 85/185 (45%), Positives = 106/185 (57%), Gaps = 11/185 (5%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58
LT NQ S E +D I+ K + + L W R SL
Sbjct: 5 LTKPNQH-TKQYPQQSREIIDD----ITQAEVDKNVFLGRLSDLTHNLANWGRKNSLWPF 59
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
FG +CC VE +DL RFG RASPRQ+DVMIVAGT KMA + R+Y+QM
Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVILRLYEQM 119
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI I+LLQ+ I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKILPVDVYVPGCPPRPEALIQAIMLLQESI 178
Query: 178 RRVGN 182
++
Sbjct: 179 QKERR 183
>gi|212550775|ref|YP_002309092.1| NADH dehydrogenase I subunit B [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|238065056|sp|B6YR59|NUOB_AZOPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|212549013|dbj|BAG83681.1| NADH dehydrogenase I subunit B [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 191
Score = 211 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 67/149 (44%), Positives = 98/149 (65%), Gaps = 1/149 (0%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
+ ++ L+ W R+ S+ +TF +CC +E M RYD RFG+ R SPRQ+DV
Sbjct: 25 NIAIAKLNDLINWGRSNSVWPLTFATSCCGIEFMCLGAARYDFARFGWEVTRNSPRQADV 84
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
+ GT+ +KMA L+R+YDQM EP+YVI++GSCA GG + SY + G D+I+PVD+Y
Sbjct: 85 VFCCGTIVHKMAPVLKRLYDQMSEPKYVIALGSCAISGGPFKSSYHTIMGIDKIIPVDVY 144
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PGCPP +A+IYG++ L +KI+ K
Sbjct: 145 IPGCPPRPDAMIYGMIQLARKIKVQNFFK 173
>gi|288818716|ref|YP_003433064.1| NADH dehydrogenase chain B [Hydrogenobacter thermophilus TK-6]
gi|288788116|dbj|BAI69863.1| NADH dehydrogenase chain B [Hydrogenobacter thermophilus TK-6]
gi|308752303|gb|ADO45786.1| NADH-quinone oxidoreductase, B subunit [Hydrogenobacter
thermophilus TK-6]
Length = 179
Score = 211 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 79/152 (51%), Positives = 114/152 (75%), Gaps = 1/152 (0%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
+ GF++T+VD+L+ W R +L +T GLACCA+EMM + R+DL+R G RASPRQ
Sbjct: 4 LNSNGFVITTVDELLRWGRRNALWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQ 63
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
+DV+IVAGT+ NK+A L+ +++QMP+P++ I+MG CA+ GG + +Y+ ++G DRI+PV
Sbjct: 64 ADVLIVAGTVVNKVAPMLKLIWEQMPDPKWCITMGGCASAGGPFP-TYATLQGMDRIIPV 122
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+Y+PGCPP + LIYGIL LQKKI+ G K
Sbjct: 123 DVYIPGCPPHPQGLIYGILQLQKKIKEKGINK 154
>gi|114054388|gb|ABI49782.1| NADH-plastoquinone oxidoreductase subunit K [Platanus occidentalis]
Length = 285
Score = 211 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 67 PLLDRTTQNSVISTTPNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KK+ R
Sbjct: 187 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKVSRE 220
>gi|300087933|ref|YP_003758455.1| NADH-quinone oxidoreductase subunit B [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527666|gb|ADJ26134.1| NADH-quinone oxidoreductase, B subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 203
Score = 211 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87
++ + L+TSVD++V W+R S+ +TFGLACCA+EMM + R+DL RFG R
Sbjct: 42 LNEDALPPNVLLTSVDKVVNWSRRYSMWPVTFGLACCAIEMMSMAASRFDLARFGMEIFR 101
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
ASPRQ+D+MI+AGTLT KMA LRR+YDQMP+P++V++MGSC GG ++ SY+VV G +
Sbjct: 102 ASPRQADLMIIAGTLTWKMAPWLRRIYDQMPDPKWVVAMGSCGISGGLFNDSYAVVPGFN 161
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
R+VPVD+YVPGCPP EAL+ I+ + K+ ++ +
Sbjct: 162 RVVPVDVYVPGCPPRPEALMQAIMDIHAKVDKMSPTR 198
>gi|158334544|ref|YP_001515716.1| NADH dehydrogenase subunit B [Acaryochloris marina MBIC11017]
gi|218527876|sp|B0C6I1|NDHK1_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName:
Full=NAD(P)H dehydrogenase I subunit K 1; AltName:
Full=NDH-1 subunit K 1; Short=NDH-K 1
gi|158304785|gb|ABW26402.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain B,
putative [Acaryochloris marina MBIC11017]
Length = 232
Score = 211 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 74/172 (43%), Positives = 111/172 (64%), Gaps = 4/172 (2%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
Q + + S+I E++ +++SV L WAR SL + +G ACC +E+
Sbjct: 2 QDQQIINPIS--QSQIPQELSE-NVILSSVSDLYDWARLSSLWPLMYGTACCFIEIAAMI 58
Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
R+D +RFG PR+SPRQ+D++I AGT+T KMA AL R+Y+QMP+P+YVI+MG+C G
Sbjct: 59 GSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITG 118
Query: 134 GYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
G + S + VRG D+++PVD+Y+PGCPP EA++ I+ L+KKI +
Sbjct: 119 GMFSSDSTTAVRGVDKLIPVDVYLPGCPPRPEAVMDAIVKLRKKIANEDVRE 170
>gi|219847965|ref|YP_002462398.1| NADH dehydrogenase subunit B [Chloroflexus aggregans DSM 9485]
gi|238065007|sp|B8G705|NUOB1_CHLAD RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|219542224|gb|ACL23962.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aggregans DSM
9485]
Length = 174
Score = 211 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 79/155 (50%), Positives = 111/155 (71%), Gaps = 2/155 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
I + + G + T+++ +V W RT ++ + FGLACCA+EMM A YDL RFG
Sbjct: 2 GIEEKAGNLGIVTTTLETVVNWGRTNAMWPLLFGLACCAIEMMGAQASNYDLSRFGMELN 61
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+D+MIVAG ++ KMA +RR+YDQMPEP++VI+MG CA GG ++ +Y++V+G
Sbjct: 62 RASPRQADLMIVAGRVSRKMAPVVRRLYDQMPEPKWVIAMGDCAACGGIFN-NYAIVQGV 120
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
D +VPVD+YV GCPP EALI GI++L +K+ R
Sbjct: 121 DEVVPVDVYVAGCPPRPEALIDGIMMLHQKVMREK 155
>gi|83774873|dbj|BAE64996.1| unnamed protein product [Aspergillus oryzae]
Length = 176
Score = 211 bits (536), Expect = 5e-53, Method: Composition-based stats.
Identities = 106/169 (62%), Positives = 127/169 (75%), Gaps = 2/169 (1%)
Query: 18 SLEKVDADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
S + +G+ ++T+ DQL+ WAR GSL +TF LACC +EMM SMP
Sbjct: 3 SQGPSSDVQLSAGRWKSGRGYAAILTTTDQLINWARQGSLWPLTFALACCGIEMMHVSMP 62
Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
RYD +R G RASPRQ+DVMIVAGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGY
Sbjct: 63 RYDQDRLGIIFRASPRQADVMIVAGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGY 122
Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
Y+YSYSVVRG DR+VPVDIYVPGCPPT EAL+Y I LQKKIRR +
Sbjct: 123 YYYSYSVVRGVDRVVPVDIYVPGCPPTPEALMYAIFQLQKKIRRTKVTR 171
>gi|113477002|ref|YP_723063.1| NADH dehydrogenase subunit B [Trichodesmium erythraeum IMS101]
gi|123160442|sp|Q10YT4|NDHK_TRIEI RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|110168050|gb|ABG52590.1| NADH-quinone oxidoreductase, B subunit [Trichodesmium erythraeum
IMS101]
Length = 240
Score = 211 bits (536), Expect = 6e-53, Method: Composition-based stats.
Identities = 70/171 (40%), Positives = 109/171 (63%), Gaps = 2/171 (1%)
Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
++S + + + ++ E++ ++T+VD L WA+ SL + +G ACC +E
Sbjct: 2 VLSPNQNQKIINPIEESPTVTQELSE-NIVLTTVDDLYNWAKLSSLWPLLYGTACCFIEF 60
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
R+D +RFG PR+SPRQ+D++I AGT+T K L R+Y+QMPEP+YVI+MG+C
Sbjct: 61 AALIGSRFDFDRFGLVPRSSPRQADLLITAGTITMKYTPTLVRLYEQMPEPKYVIAMGAC 120
Query: 130 ANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
GG + S + VRG D+++PVD+Y+PGCPP EA+I ++ L+KKI
Sbjct: 121 TITGGMFSMDSPTAVRGVDKLIPVDVYIPGCPPRPEAIIDAVIKLRKKIAN 171
>gi|167646797|ref|YP_001684460.1| NADH dehydrogenase subunit B [Caulobacter sp. K31]
gi|218527984|sp|B0SZ51|NUOB_CAUSK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|167349227|gb|ABZ71962.1| NADH-quinone oxidoreductase, B subunit [Caulobacter sp. K31]
Length = 196
Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats.
Identities = 130/162 (80%), Positives = 146/162 (90%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D F +S ++ KGF+ + D L+TWARTGSLMWMTFGLACCAVEMM ++MPRYDLER+
Sbjct: 34 DPYFDGLSGQLADKGFVTAAADDLITWARTGSLMWMTFGLACCAVEMMHSAMPRYDLERY 93
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
GFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYY+YSYSV
Sbjct: 94 GFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYYYSYSV 153
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VRGCDRIVP+DIYVPGCPPTAEAL+YG+L LQKKIRR G ++
Sbjct: 154 VRGCDRIVPIDIYVPGCPPTAEALVYGVLQLQKKIRRTGTIE 195
>gi|257054393|ref|YP_003132225.1| NADH dehydrogenase subunit B [Saccharomonospora viridis DSM 43017]
gi|256584265|gb|ACU95398.1| NADH dehydrogenase subunit B [Saccharomonospora viridis DSM 43017]
Length = 182
Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats.
Identities = 79/151 (52%), Positives = 108/151 (71%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-S 89
E GFL+T+++ +V WAR S+ TFGLACCA+EMM RYD+ RFG A +
Sbjct: 4 EEKLPNGFLLTTLEGVVNWARKNSMWPATFGLACCAIEMMTTGGSRYDIARFGMERFAAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG +T KMA LR++YDQMPEP++V++MG CA+ GG ++ +Y+VV+G D I
Sbjct: 64 PRQADLMIVAGRVTQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFN-NYAVVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E L+ IL L K++
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKVQDE 153
>gi|326565205|gb|EGE15391.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 103P14B1]
gi|326574002|gb|EGE23951.1| NADH dehydrogenase subunit B [Moraxella catarrhalis CO72]
gi|326577029|gb|EGE26924.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 101P30B1]
Length = 222
Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats.
Identities = 85/185 (45%), Positives = 106/185 (57%), Gaps = 11/185 (5%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58
LT NQ S E +D I+ K + + L W R SL
Sbjct: 5 LTKPNQH-TKQYPQQSREIIDD----ITQAEVDKNVFLGRLSDLTHNLANWGRKNSLWPF 59
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
FG +CC VE +DL RFG RASPRQ+DVMIVAGT KMA + R+Y+QM
Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVILRLYEQM 119
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI I+LLQ+ I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKILPVDVYVPGCPPRPEALIQAIMLLQESI 178
Query: 178 RRVGN 182
++
Sbjct: 179 QKERR 183
>gi|163848441|ref|YP_001636485.1| NADH dehydrogenase subunit B [Chloroflexus aurantiacus J-10-fl]
gi|222526369|ref|YP_002570840.1| NADH dehydrogenase subunit B [Chloroflexus sp. Y-400-fl]
gi|238065028|sp|A9WFB2|NUOB2_CHLAA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|238065030|sp|B9LAU1|NUOB2_CHLSY RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|163669730|gb|ABY36096.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus aurantiacus
J-10-fl]
gi|222450248|gb|ACM54514.1| NADH-quinone oxidoreductase, B subunit [Chloroflexus sp. Y-400-fl]
Length = 174
Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats.
Identities = 79/155 (50%), Positives = 111/155 (71%), Gaps = 2/155 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
I + + G + T+++ +V W RT ++ + FGLACCA+EMM A YDL RFG
Sbjct: 2 GIEEKAGNLGIVTTTLETVVNWGRTNAMWPLLFGLACCAIEMMGAQASNYDLSRFGMELN 61
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+D+MIVAG ++ KMA +RR+YDQMPEP++VI+MG CA GG ++ +Y++V+G
Sbjct: 62 RASPRQADLMIVAGRVSRKMAPVVRRLYDQMPEPKWVIAMGDCAACGGIFN-NYAIVQGV 120
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
D +VPVD+YV GCPP EALI GI++L +K+ R
Sbjct: 121 DEVVPVDVYVAGCPPRPEALIDGIMMLHQKVMREK 155
>gi|258592365|emb|CBE68674.1| NADH-ubiquinone oxidoreductase 20 kDa subunit (NADH dehydrogenase
subunit 10) [NC10 bacterium 'Dutch sediment']
Length = 175
Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats.
Identities = 85/158 (53%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APR 87
+ + T+V+ L WAR S MTFGLACCA+EMM A R+DL+R G R
Sbjct: 4 FDNRQADPNVITTTVEWLFNWARKSSPWPMTFGLACCAIEMMAAGASRFDLDRLGAGVFR 63
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
SPRQSDVMIVAGT+T KMA ++ +Y+QMP+P++VI+MG+CA GG ++ +Y VV+G
Sbjct: 64 PSPRQSDVMIVAGTVTEKMAPRIKTLYEQMPDPKWVIAMGACAISGGPFYYDAYHVVKGV 123
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D +VPVD+YVPGCPPT EALI+GIL LQ +I R K
Sbjct: 124 DLLVPVDVYVPGCPPTPEALIFGILTLQDQIMRGERAK 161
>gi|94985017|ref|YP_604381.1| NADH-quinone oxidoreductase, B subunit [Deinococcus geothermalis
DSM 11300]
gi|238055292|sp|Q1IZX2|NUOB_DEIGD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|94555298|gb|ABF45212.1| NADH dehydrogenase subunit B [Deinococcus geothermalis DSM 11300]
Length = 178
Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats.
Identities = 87/162 (53%), Positives = 118/162 (72%), Gaps = 2/162 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ F R E+ +G L +++++LV W R+ SL TFGLACCA+EMM ++ R DL
Sbjct: 1 MALKELFDRDWQELESEGVLFSTLEKLVAWGRSNSLWPATFGLACCAIEMMSSTDGRNDL 60
Query: 80 ERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++
Sbjct: 61 SRFGSEVFRASPRQADVMIVAGRLSKKMAPIMRRVYDQMPDPKWVISMGACASSGGMFN- 119
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+Y+VV+ D +VPVD++VPGCPP EALIY ++ LQKK+R
Sbjct: 120 NYAVVQNVDHVVPVDVFVPGCPPRPEALIYAVMQLQKKVRGE 161
>gi|15616775|ref|NP_239987.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681530|ref|YP_002467915.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682086|ref|YP_002468470.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471211|ref|ZP_05635210.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|11133957|sp|P57253|NUOB_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238055274|sp|B8D8V6|NUOB_BUCA5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238055275|sp|B8D760|NUOB_BUCAT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|25299001|pir||A84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain B [imported] -
Buchnera sp. (strain APS)
gi|10038838|dbj|BAB12873.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219621819|gb|ACL29975.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624373|gb|ACL30528.1| NADH dehydrogenase beta subunit [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311085897|gb|ADP65979.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086470|gb|ADP66551.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311087051|gb|ADP67131.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087610|gb|ADP67689.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 224
Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats.
Identities = 78/177 (44%), Positives = 105/177 (59%), Gaps = 2/177 (1%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
+ ++E V + G + + +LV W R SL FGL+CC
Sbjct: 10 SDNNNKKYPKQTIESVSDPLEEYLKKNIFMGKITQLLHKLVNWGRKNSLWPYNFGLSCCY 69
Query: 67 VEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
VEM+ A +D+ RFG RASPRQ+DVM++AGT KMA ++R+YDQM EP++VIS
Sbjct: 70 VEMVSAFTSVHDVARFGSEVLRASPRQADVMVIAGTPFIKMAPVIQRLYDQMLEPKWVIS 129
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
MG+CAN GG Y YSVV+G D+ +PVDIY+PGCPP EA + ++LLQK I
Sbjct: 130 MGACANSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYMQALILLQKLINEERR 185
>gi|86609773|ref|YP_478535.1| NADH dehydrogenase subunit B [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123501307|sp|Q2JJA9|NDHK_SYNJB RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|86558315|gb|ABD03272.1| NADH-ubiquinone/plastoquinone oxidoreductase, K subunit
[Synechococcus sp. JA-2-3B'a(2-13)]
Length = 244
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 68/163 (41%), Positives = 107/163 (65%), Gaps = 2/163 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+++++++ ++T+V+ L WA+ SL + +G ACC +E R+D +RF
Sbjct: 11 PGAAPQVTTDLS-NNVVLTTVNDLYNWAKMSSLWPLLYGTACCFIEFAAMLGSRFDFDRF 69
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYS 141
G PR+SPR +D++I AGT+T KMA AL ++Y QM EP+YVI+MG+C GG + SY+
Sbjct: 70 GLLPRSSPRTADLIITAGTVTMKMAPALVKLYQQMAEPKYVIAMGACTISGGMFSSDSYT 129
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VRG D+++PVD+Y+PGCPP EA++ I+ L+KKI +
Sbjct: 130 AVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKIAAEDMRE 172
>gi|190893214|ref|YP_001979756.1| NADH-ubiquinone oxidoreductase, chain B [Rhizobium etli CIAT 652]
gi|238065034|sp|B3PY57|NUOB2_RHIE6 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|190698493|gb|ACE92578.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
CIAT 652]
Length = 167
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ L T+ D ++ W+R+ +L TFG+ACCA+EM+ A RYDL+RFG R SP
Sbjct: 5 NNAIRDSVLFTTADSIINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + V
Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD++VPGCPP EAL++G LLLQ+KI+R +
Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 156
>gi|162457344|ref|YP_001619711.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
gi|238065042|sp|A9G9S9|NUOB2_SORC5 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|161167926|emb|CAN99231.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
Length = 182
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 90/167 (53%), Positives = 117/167 (70%), Gaps = 4/167 (2%)
Query: 21 KVDADFSRISSEITHKGFLVTSVDQ----LVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
E G + TSVDQ L+ W R+ S+ +M FGLACCA+E+MQ PR
Sbjct: 8 MAPPRGWEAKYESDGGGVITTSVDQTVNWLLNWGRSNSVWYMLFGLACCAIELMQTGGPR 67
Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
DLERFG APR SPR SD+ I+AGTLT KMA+ ++R+YDQM EPR+VISMGSC+N GG +
Sbjct: 68 GDLERFGAAPRPSPRSSDLFIIAGTLTYKMATRVKRLYDQMSEPRFVISMGSCSNCGGLF 127
Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
Y+YSV +G D+I+PVD+YVPGCPP EAL+ G+L +Q+KI+ +
Sbjct: 128 QYAYSVCKGVDQIIPVDVYVPGCPPRPEALLEGLLKIQEKIKSERAL 174
>gi|86606638|ref|YP_475401.1| NADH dehydrogenase subunit B [Synechococcus sp. JA-3-3Ab]
gi|123505801|sp|Q2JT69|NDHK_SYNJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
gi|86555180|gb|ABD00138.1| NADH-ubiquinone/plastoquinone oxidoreductase, K subunit
[Synechococcus sp. JA-3-3Ab]
Length = 244
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 69/163 (42%), Positives = 108/163 (66%), Gaps = 2/163 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
A +++++++ ++T+V+ L WA+ SL + +G ACC +E R+D +RF
Sbjct: 11 PASAPQVTTDLS-NNVVLTTVNDLYNWAKMSSLWPLLYGTACCFIEFAAMLGSRFDFDRF 69
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYS 141
G PR+SPR +D++I AGT+T KMA AL ++Y QM EP+YVI+MG+C GG + SY+
Sbjct: 70 GLLPRSSPRTADLIITAGTVTMKMAPALVKLYQQMAEPKYVIAMGACTISGGMFSSDSYT 129
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VRG D+++PVD+Y+PGCPP EA++ I+ L+KKI +
Sbjct: 130 AVRGVDKLIPVDVYIPGCPPRPEAIMDAIVKLRKKIAAEDMRE 172
>gi|296268274|ref|YP_003650906.1| NADH-quinone oxidoreductase subunit B [Thermobispora bispora DSM
43833]
gi|296091061|gb|ADG87013.1| NADH-quinone oxidoreductase, B subunit [Thermobispora bispora DSM
43833]
Length = 183
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 79/152 (51%), Positives = 109/152 (71%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
E GFL+T+V++ V WAR S+ TFGLACCA+E+M P++DL RFG A+
Sbjct: 4 EEKLPSGFLLTTVEKAVGWARKNSVWPATFGLACCAIELMATGGPKHDLARFGMERASAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA +RR+YDQM EP++VI+MG CA+ GG ++ +Y+VV+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVVRRIYDQMAEPKWVIAMGVCASSGGMFN-NYAVVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVD+Y+PGCPP E LI I+ L KI+ +
Sbjct: 123 VPVDVYLPGCPPRPEMLIDAIVKLHDKIQNMK 154
>gi|220904929|ref|YP_002480241.1| NADH-quinone oxidoreductase subunit B [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|238065121|sp|B8J1D6|NUOB_DESDA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|219869228|gb|ACL49563.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 183
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 83/146 (56%), Positives = 106/146 (72%), Gaps = 1/146 (0%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
G ++ ++ LV W R GS+ +TFGLACCA+EMM +DL+RFG RASPRQ+D M
Sbjct: 33 GAVIGPLNALVNWGRAGSIWPVTFGLACCAIEMMATGAAHHDLDRFGIIFRASPRQADCM 92
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
+VAGTL+ KMA LRRVYDQMPEPRYV++MGSCA GG + SY+V +G D++VPVD+YV
Sbjct: 93 VVAGTLSKKMAPVLRRVYDQMPEPRYVLAMGSCACSGGLFQ-SYAVTQGVDQVVPVDVYV 151
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGN 182
PGCPP EAL G + LQ+ I +
Sbjct: 152 PGCPPRPEALFDGFIRLQEIINKEQM 177
>gi|297585416|ref|YP_003701196.1| NADH-quinone oxidoreductase subunit B [Bacillus selenitireducens
MLS10]
gi|297143873|gb|ADI00631.1| NADH-quinone oxidoreductase, B subunit [Bacillus selenitireducens
MLS10]
Length = 175
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 86/149 (57%), Positives = 107/149 (71%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
E +K T VDQ+ W+RT S ++FGLACCA+EMM RYD +RFG RASPR
Sbjct: 18 EDINKNVFFTKVDQIKAWSRTRSFWPLSFGLACCAIEMMATGGNRYDFDRFGVIFRASPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+DVMIVAGT+T KMA LR +YDQMPEP++VI+MGSCA GG Y +YSV+ G D+IVP
Sbjct: 78 HADVMIVAGTVTGKMAPVLRTLYDQMPEPKWVIAMGSCATCGGPYKEAYSVLNGVDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VD+YV GCPPT AL+ G+ L++KIR
Sbjct: 138 VDVYVSGCPPTPPALLDGVERLREKIRLE 166
>gi|15806517|ref|NP_295228.1| NADH dehydrogenase subunit B [Deinococcus radiodurans R1]
gi|81624845|sp|Q9RU87|NUOB_DEIRA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|6459265|gb|AAF11070.1|AE001994_6 NADH dehydrogenase I, B subunit [Deinococcus radiodurans R1]
Length = 181
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 87/162 (53%), Positives = 117/162 (72%), Gaps = 2/162 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ R E+ +G L +S+++LV W R+ SL TFGLACCA+EMM ++ R D+
Sbjct: 1 MPLKELIDRDWQELESEGVLFSSLEKLVAWGRSNSLWPATFGLACCAIEMMSSTNARNDM 60
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG RASPRQ+DVMIVAG L+ KMA +RRVYDQMP+P++VISMG+CA+ GG ++
Sbjct: 61 SRFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWVISMGACASSGGMFN- 119
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+Y+VV+ D +VPVDI+VPGCPP EALIY ++ LQKK+R
Sbjct: 120 NYAVVQNVDSVVPVDIFVPGCPPRPEALIYAVMQLQKKVRGE 161
>gi|237751580|ref|ZP_04582060.1| NADH dehydrogenase subunit I B [Helicobacter bilis ATCC 43879]
gi|229372946|gb|EEO23337.1| NADH dehydrogenase subunit I B [Helicobacter bilis ATCC 43879]
Length = 169
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 85/156 (54%), Positives = 115/156 (73%), Gaps = 3/156 (1%)
Query: 31 SEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
E++ +G + SVD+++ W R+ SL +T+GLACCA+EMM R+D +RFG RA
Sbjct: 7 GELSPRGMPVALGSVDKILNWGRSNSLWPLTYGLACCAIEMMATGGSRFDFDRFGIIFRA 66
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPRQSDVMI+AGTLT K A RR+YDQMPEP++V+SMGSCAN GG ++ +Y+ V+G DR
Sbjct: 67 SPRQSDVMIIAGTLTKKHAEFTRRLYDQMPEPKWVVSMGSCANTGGMFN-TYATVQGVDR 125
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
I+PVDIY+PGC P E L Y +++LQ+KIR +K
Sbjct: 126 IIPVDIYLPGCAPRPETLQYAMMVLQQKIRSEKAIK 161
>gi|34556898|ref|NP_906713.1| NADH dehydrogenase subunit B [Wolinella succinogenes DSM 1740]
gi|81653582|sp|Q7MA50|NUOB_WOLSU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|34482613|emb|CAE09613.1| NADH DEHYDROGENASE I CHAIN B [Wolinella succinogenes]
Length = 169
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 86/147 (58%), Positives = 113/147 (76%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++T+VD LV W R+ SL +T+GLACCA+EMM + RYD +RFG RASPRQ+DVMI
Sbjct: 16 VVLTTVDHLVNWGRSNSLWALTYGLACCAIEMMASGAGRYDFDRFGTIFRASPRQADVMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLT K A +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+GCDRI+PVD+Y+P
Sbjct: 76 VAGTLTKKHAEFIRRLYDQMSEPKWVISMGSCANTGGMFN-TYATVQGCDRIIPVDVYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y +++LQ+KIRR +
Sbjct: 135 GCAPRPETLQYAVMVLQQKIRREKASR 161
>gi|299137549|ref|ZP_07030730.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp.
MP5ACTX8]
gi|298600190|gb|EFI56347.1| NADH-quinone oxidoreductase, B subunit [Acidobacterium sp.
MP5ACTX8]
Length = 205
Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats.
Identities = 79/156 (50%), Positives = 113/156 (72%), Gaps = 3/156 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E +G ++ S+D + W R S+ MTFGLACCA+EMM RYD+ RFG R S
Sbjct: 45 GEEQPEGVVLASLDAAINWVRKNSVWPMTFGLACCAIEMMSMGGSRYDIARFGAEVFRPS 104
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSD+MI+AG ++ KMA +RR+Y+QMPEP++VISMG+CA GG ++ +Y++++G +++
Sbjct: 105 PRQSDLMIIAGRVSQKMAPVIRRLYEQMPEPKWVISMGACATSGGVFN-NYALLQGVNQV 163
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR-RVGNVK 184
+PVD+YVPGCPP E L+Y I LLQ+KI+ G V+
Sbjct: 164 IPVDVYVPGCPPRPEQLLYAITLLQEKIQGSRGTVR 199
>gi|323148910|ref|YP_004222465.1| NADH-plastoquinone oxidoreductase subunit K [Smilax china]
gi|308742601|gb|ADO33452.1| NADH-plastoquinone oxidoreductase subunit K [Smilax china]
Length = 284
Score = 210 bits (534), Expect = 8e-53, Method: Composition-based stats.
Identities = 67/154 (43%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + T + T+++ L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 66 PLLDQTTPNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 125
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPR++ +++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 126 SSPRKAALILPAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 185
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVD+Y+PGCPP EA+I I L+KKI
Sbjct: 186 DKLIPVDVYLPGCPPKPEAVIDAITKLRKKISLE 219
>gi|327191021|gb|EGE58075.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
CNPAF512]
Length = 167
Score = 210 bits (534), Expect = 8e-53, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ L T+ D ++ W+R+ +L TFG+ACCA+EM+ A RYDL+RFG R
Sbjct: 2 GAVNNAIRDSVLFTTADSVINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFR 61
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
SPRQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G +
Sbjct: 62 PSPRQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSE 120
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVD++VPGCPP EAL++G LLLQ+KI+R +
Sbjct: 121 TFVPVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 156
>gi|163781785|ref|ZP_02176785.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1]
gi|159883005|gb|EDP76509.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1]
Length = 179
Score = 210 bits (534), Expect = 8e-53, Method: Composition-based stats.
Identities = 85/152 (55%), Positives = 115/152 (75%), Gaps = 1/152 (0%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
I GF+ T+VD+L+ W R +L +T GLACCA+EMM A+ R+DL+R G RASPRQ
Sbjct: 4 INSNGFVTTTVDELLKWGRRNALWPVTIGLACCAIEMMHAAASRFDLDRLGVIFRASPRQ 63
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
SDV+IVAGT+ NK+A L+ ++DQMP+P++ ISMG C++ GG + +YS ++G DRI+PV
Sbjct: 64 SDVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCSSAGGPFP-TYSTLQGIDRIIPV 122
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+YVPGCPPT + LIYGIL LQ+KI+ G K
Sbjct: 123 DVYVPGCPPTPQGLIYGILQLQRKIKEQGVTK 154
>gi|117927477|ref|YP_872028.1| NADH dehydrogenase subunit B [Acidothermus cellulolyticus 11B]
gi|238065066|sp|A0LRI2|NUOB_ACIC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|117647940|gb|ABK52042.1| NADH dehydrogenase subunit B [Acidothermus cellulolyticus 11B]
Length = 184
Score = 210 bits (534), Expect = 8e-53, Method: Composition-based stats.
Identities = 81/152 (53%), Positives = 110/152 (72%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V++ V W R SL TFGLACCA+EMM RYDL RFG RAS
Sbjct: 4 EEKIPGGFLLTTVEKAVGWVRKSSLWPATFGLACCAIEMMATGAGRYDLARFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVD+Y+PGCPP E L++ IL L +KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLMHAILELHEKIKSTK 154
>gi|300782452|ref|YP_003762743.1| NADH dehydrogenase I subunit B [Amycolatopsis mediterranei U32]
gi|299791966|gb|ADJ42341.1| NADH dehydrogenase I subunit B [Amycolatopsis mediterranei U32]
Length = 182
Score = 210 bits (534), Expect = 9e-53, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 105/151 (69%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+ S++ LV WAR SL TFGLACCA+EMM RYD+ RFG A+
Sbjct: 4 EEKLPNGILLASLEGLVNWARKNSLWPATFGLACCAIEMMTVGGSRYDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG +T KMA LR++YDQM EPR+V++MG CA+ GG ++ +Y+VV+G D I
Sbjct: 64 PRQADLMIVAGRVTQKMAPVLRQIYDQMAEPRWVLAMGVCASSGGMFN-NYAVVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E L+ IL L KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKIQDE 153
>gi|289548152|ref|YP_003473140.1| NADH-quinone oxidoreductase subunit beta [Thermocrinis albus DSM
14484]
gi|289181769|gb|ADC89013.1| NADH-quinone oxidoreductase, B subunit [Thermocrinis albus DSM
14484]
Length = 178
Score = 210 bits (534), Expect = 9e-53, Method: Composition-based stats.
Identities = 78/152 (51%), Positives = 117/152 (76%), Gaps = 1/152 (0%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
+ GF++T+V++L++W+R +L +T GLACCA+EMM A+ R+DL+R G RASPRQ
Sbjct: 4 LNSNGFVLTTVEELLSWSRRNALWPVTIGLACCAIEMMHAAASRFDLDRLGVIFRASPRQ 63
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
+D++IVAGT+ NK+A L+ +++QMP+P++ I+MG CA+ GG + +YS ++G DRI+PV
Sbjct: 64 ADLLIVAGTVVNKVAPMLKLIWEQMPDPKWCITMGGCASAGGPFP-TYSTLQGMDRIIPV 122
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+Y+PGCPP + L+YGIL LQKKI+ G K
Sbjct: 123 DVYIPGCPPHPQGLLYGILQLQKKIKEQGVRK 154
>gi|313681394|ref|YP_004059132.1| NADH dehydrogenase subunit b [Sulfuricurvum kujiense DSM 16994]
gi|313154254|gb|ADR32932.1| NADH dehydrogenase subunit B [Sulfuricurvum kujiense DSM 16994]
Length = 169
Score = 210 bits (534), Expect = 9e-53, Method: Composition-based stats.
Identities = 80/147 (54%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+T++D++V W R+ SL +T+GLACC +EMM + RYD +RFG RASPRQ+++M+
Sbjct: 16 VALTTIDKVVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQAELMV 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLT K A +RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DR++PVD+Y+P
Sbjct: 76 VAGTLTKKHAEFIRRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRVIPVDLYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y +LLLQ+KIRR +
Sbjct: 135 GCAPRPETLQYAVLLLQQKIRRESASR 161
>gi|238927268|ref|ZP_04659028.1| proton-translocating NADH-ubiquinone oxidoreductase, subunit B
[Selenomonas flueggei ATCC 43531]
gi|238884855|gb|EEQ48493.1| proton-translocating NADH-ubiquinone oxidoreductase, subunit B
[Selenomonas flueggei ATCC 43531]
Length = 179
Score = 210 bits (534), Expect = 9e-53, Method: Composition-based stats.
Identities = 79/154 (51%), Positives = 108/154 (70%), Gaps = 1/154 (0%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
E + V +D+L+ WA S+ ++ GLACCA+EMM + R+DL RFG+ R P
Sbjct: 9 ESLRENVFVVKLDELLRWAHANSIWPLSSGLACCAIEMMTTATARFDLARFGYEVFRPCP 68
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D+ IVAGTLT KMA A+ R+Y++MPEP+YVI+MG+CA GG + SYSVV G D ++
Sbjct: 69 RQADLFIVAGTLTWKMAPAVVRLYEEMPEPKYVIAMGACAIAGGPFADSYSVVSGVDELL 128
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
PVD+Y+PGCPP EALI G+L L++KI V+
Sbjct: 129 PVDVYIPGCPPRPEALIDGMLKLREKILHPERVR 162
>gi|224437358|ref|ZP_03658330.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818]
gi|313143821|ref|ZP_07806014.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818]
gi|313128852|gb|EFR46469.1| NADH dehydrogenase subunit B [Helicobacter cinaedi CCUG 18818]
Length = 169
Score = 210 bits (534), Expect = 9e-53, Method: Composition-based stats.
Identities = 82/146 (56%), Positives = 113/146 (77%), Gaps = 1/146 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++SVD+L+ W R+ SL +T+GLACCA+EMM R+DL+RFG RASPRQ+D+MI
Sbjct: 16 IALSSVDKLLNWGRSNSLWGLTYGLACCAIEMMATGGSRFDLDRFGTIFRASPRQADLMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
++GT+T K A +RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+P
Sbjct: 76 ISGTVTKKHAEFVRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
GC P E L Y +++LQ+KIR+ +
Sbjct: 135 GCAPRPETLQYAVMVLQQKIRKQKAI 160
>gi|9652180|gb|AAF91429.1|AF279902_1 NADH-ubiquinone oxidoreductase subunit PSST [Lupinus luteus]
Length = 210
Score = 210 bits (534), Expect = 9e-53, Method: Composition-based stats.
Identities = 112/145 (77%), Positives = 122/145 (84%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+++ VD L+ WAR GS+ MTFGLACCAVEMM RYDL+RFG R SPRQSD M
Sbjct: 58 EFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCM 117
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYYHYSY VVRGCDRIVPVDIYV
Sbjct: 118 IVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYYVVRGCDRIVPVDIYV 177
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPPTAEAL+YG+L LQKKI R
Sbjct: 178 PGCPPTAEALLYGLLQLQKKINRRK 202
>gi|94969279|ref|YP_591327.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis
Ellin345]
gi|238065004|sp|Q1IPE7|NUOB1_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|94551329|gb|ABF41253.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis
Ellin345]
Length = 213
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 79/152 (51%), Positives = 108/152 (71%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E +G ++T++D V W R S+ MTFGLACCA+EMM R+D+ RFG R S
Sbjct: 49 GEQPEEGIVLTTLDNAVNWIRKNSIWPMTFGLACCAIEMMSMGASRFDIARFGAEVFRPS 108
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSD+MI+AG ++ KMA +R +Y QMPEP++VISMG+CA GG ++ +Y++V+G ++
Sbjct: 109 PRQSDLMIIAGRVSQKMAPVIRHLYLQMPEPKWVISMGACATSGGVFN-NYALVQGVNQY 167
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+PVDIYVPGCPP E LIY I LLQ+KI+
Sbjct: 168 IPVDIYVPGCPPRPEQLIYAITLLQEKIQAER 199
>gi|87123074|ref|ZP_01078925.1| putative respiratory-chain NADH dehydrogenase subunit
[Synechococcus sp. RS9917]
gi|86168794|gb|EAQ70050.1| putative respiratory-chain NADH dehydrogenase subunit
[Synechococcus sp. RS9917]
Length = 246
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 72/157 (45%), Positives = 107/157 (68%), Gaps = 2/157 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
++S+++ ++TS+D L WAR SL + +G ACC +E R+D +RFG P
Sbjct: 20 PAVTSDLSE-NVILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVP 78
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
R+SPRQ+D++IVAGT+T KMA AL R+Y+QMPEP+YVI+MG+C GG + S + VRG
Sbjct: 79 RSSPRQADLLIVAGTVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADSTTAVRG 138
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 139 VDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVANESV 175
>gi|27904647|ref|NP_777773.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|38372478|sp|Q89AU5|NUOB_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|27904044|gb|AAO26878.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 222
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 81/182 (44%), Positives = 107/182 (58%), Gaps = 3/182 (1%)
Query: 3 LTTVNQKIISGQ-SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
LT VN +V + + G L + LV W R SL FG
Sbjct: 5 LTRVNISDDDQNYPREKKIQVSDPTKKYIQKNVFMGTLSKVLHNLVNWGRKNSLWPYNFG 64
Query: 62 LACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
L+CC VEM+ + +D+ RFG RASPRQ+D M++AGT KM ++R+YDQM EP
Sbjct: 65 LSCCYVEMVTSFTSVHDISRFGSEVLRASPRQADFMVIAGTPFIKMVPIIQRLYDQMLEP 124
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA I+G++LLQK I +
Sbjct: 125 KWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYIHGLMLLQKSISKE 183
Query: 181 GN 182
Sbjct: 184 RR 185
>gi|291298799|ref|YP_003510077.1| NADH-quinone oxidoreductase subunit B [Stackebrandtia nassauensis
DSM 44728]
gi|290568019|gb|ADD40984.1| NADH-quinone oxidoreductase, B subunit [Stackebrandtia nassauensis
DSM 44728]
Length = 216
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+TSV++LV W R S TFGLACCA+EMM RYD RFG RAS
Sbjct: 4 EEKLPSGILLTSVEKLVNWTRKASFWPATFGLACCAIEMMATGAARYDTARFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V+SMG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMSEPKWVLSMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVDIY+PGCPP E L+ IL L KI
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHDKILHE 153
>gi|124515815|gb|EAY57324.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum rubarum]
Length = 178
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 90/142 (63%), Positives = 111/142 (78%), Gaps = 2/142 (1%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
V++L+ W+R +L MTFGLACCA+EMM A R+D++RFG RASPRQSD+MIVAGT
Sbjct: 22 VNELLNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMIVAGT 81
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
LT KMA +RR+YDQMPEPRYVI+MGSCA G Y SYSVV+G DRI+PVD+YVPGCPP
Sbjct: 82 LTRKMAPVVRRIYDQMPEPRYVIAMGSCATSGNIY-DSYSVVQGVDRIIPVDVYVPGCPP 140
Query: 162 TAEALIYGILLLQKKIRRVGNV 183
EAL+ G++ LQ+KI + V
Sbjct: 141 RPEALLDGLMKLQEKIMKDRPV 162
>gi|254446527|ref|ZP_05060003.1| NADH-quinone oxidoreductase, B subunit subfamily [Verrucomicrobiae
bacterium DG1235]
gi|198260835|gb|EDY85143.1| NADH-quinone oxidoreductase, B subunit subfamily [Verrucomicrobiae
bacterium DG1235]
Length = 171
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 78/152 (51%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
G +V+ D ++ W RT SL M GLACCA+E+M A ++D+ RFG R SPRQ
Sbjct: 14 VEGGVIVSKADAVINWIRTHSLWPMPMGLACCAIELMAAGASKFDISRFGAEVMRFSPRQ 73
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
SDVMIVAGT+T KMA +RR+YDQM EP++VI+MG+CA+ GG Y SY+ ++G DRIVPV
Sbjct: 74 SDVMIVAGTVTYKMAPIVRRIYDQMAEPKWVIAMGACASSGGMYR-SYATLQGVDRIVPV 132
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+Y+ GCPP EAL+ ++ LQ K+ + +
Sbjct: 133 DVYISGCPPRPEALLDALIKLQDKVSTETSTQ 164
>gi|313183927|ref|YP_004021781.1| NADH-plastoquinone oxidoreductase subunit K [Equisetum arvense]
gi|281371647|gb|ADA63580.1| NADH-plastoquinone oxidoreductase subunit K [Equisetum arvense]
Length = 250
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 72/177 (40%), Positives = 116/177 (65%), Gaps = 8/177 (4%)
Query: 6 VNQKIISGQSSCSLEK-VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
+N II + S+E +D++ + + + ++T++ WAR SL + +G +C
Sbjct: 10 LNPSIIHEKIRFSMEPSIDSNTNELDA------IILTNLKDFSNWARLSSLWPLLYGTSC 63
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
C +E R+D +R+G PR+SPRQ+D++I AGT+T KMA +L R+Y+QMPEP+YVI
Sbjct: 64 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLLITAGTVTMKMAPSLVRLYEQMPEPKYVI 123
Query: 125 SMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+MG+C GG + SYS VRG D+++PV++Y+PGCPP EA+I ++ L+K++ R
Sbjct: 124 AMGACTITGGMFSTDSYSTVRGVDKLIPVNVYLPGCPPKPEAIIDAVVKLRKEVARE 180
>gi|154175216|ref|YP_001407461.1| NADH dehydrogenase subunit B [Campylobacter curvus 525.92]
gi|254767791|sp|A7GW69|NUOB_CAMC5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|112803227|gb|EAU00571.1| 50S ribosomal protein L10 [Campylobacter curvus 525.92]
Length = 170
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 86/147 (58%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++T+VD+LV W R+ SL +++GLACCA+EMM + RYD +RFG RASPR S+VMI
Sbjct: 16 IVLTTVDRLVQWGRSNSLWALSYGLACCAIEMMASGASRYDFDRFGTIFRASPRHSEVMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTLT K A RR+YDQMPEP++VISMGSCAN GG ++ +YS V+G DRI+PVDIY+P
Sbjct: 76 IAGTLTKKHAEFTRRLYDQMPEPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y +++LQKKIRR +
Sbjct: 135 GCAPRPETLQYALMILQKKIRRQSAFR 161
>gi|299830273|ref|YP_003734437.1| NADH dehydrogenase subunit 10 [Paramecium caudatum]
gi|299507832|emb|CAZ66816.1| NADH dehydrogenase subunit 10 [Paramecium caudatum]
Length = 154
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 95/143 (66%), Positives = 122/143 (85%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
FL TS + L++WAR GS +TFGLACCA+EMM A++ RYD +RFG RA+PRQSD++I
Sbjct: 5 FLKTSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQSDLII 64
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGT+TNKMA ALRR+YDQ +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PVDI+VP
Sbjct: 65 VAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVP 124
Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
GCPP+AEAL +G+L LQK + +
Sbjct: 125 GCPPSAEALFFGVLQLQKTLMKT 147
>gi|320106231|ref|YP_004181821.1| NADH-quinone oxidoreductase subunit B [Terriglobus saanensis
SP1PR4]
gi|319924752|gb|ADV81827.1| NADH-quinone oxidoreductase, B subunit [Terriglobus saanensis
SP1PR4]
Length = 205
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 77/149 (51%), Positives = 110/149 (73%), Gaps = 2/149 (1%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQ 92
+G ++ S+D + W R S+ MTFGLACCA+EMM RYD+ RFG R SPRQ
Sbjct: 48 QPEGIVLASMDAAINWVRKNSVWPMTFGLACCAIEMMSMGGSRYDIARFGAEVFRPSPRQ 107
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
SD+MI+AG ++ KMA +RR+Y+QMPEP++VISMG+CA GG ++ +Y++++G ++I+PV
Sbjct: 108 SDLMIIAGRVSQKMAPVIRRLYEQMPEPKWVISMGACATSGGVFN-NYALLQGVNQIIPV 166
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181
D+YVPGCPP E L+Y I LLQ+KI++
Sbjct: 167 DLYVPGCPPRPEQLLYAITLLQEKIQQDR 195
>gi|304437258|ref|ZP_07397218.1| NADH-quinone oxidoreductase subunit B [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304369750|gb|EFM23415.1| NADH-quinone oxidoreductase subunit B [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 179
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 78/151 (51%), Positives = 107/151 (70%), Gaps = 1/151 (0%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQS 93
+ V +D+L+ WA S+ ++ GLACCA+EMM + R+DL RFG+ R PRQ+
Sbjct: 12 RENVFVVKLDELLRWAHANSVWPLSSGLACCAIEMMTTATARFDLARFGYEVFRPCPRQA 71
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
D+ IVAGTLT KMA A+ R+Y++MPEP+YVI+MG+CA GG + SYSVV G D ++PVD
Sbjct: 72 DLFIVAGTLTWKMAPAVVRLYEEMPEPKYVIAMGACAIAGGPFADSYSVVSGVDELLPVD 131
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+Y+PGCPP EALI G+L L++KI V+
Sbjct: 132 VYIPGCPPRPEALIDGMLKLREKILHPERVR 162
>gi|152993807|ref|YP_001359528.1| NADH dehydrogenase subunit B [Sulfurovum sp. NBC37-1]
gi|238065218|sp|A6QCG2|NUOB_SULNB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|151425668|dbj|BAF73171.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1]
Length = 172
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 84/145 (57%), Positives = 109/145 (75%), Gaps = 1/145 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+TSVD+LV W R+ SL +T+GLACCA+EMM + RYD +R G RASPRQ+DVMI
Sbjct: 16 IALTSVDKLVNWGRSNSLWPLTYGLACCAIEMMASGASRYDFDRMGTIFRASPRQADVMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTL+ K + RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P
Sbjct: 76 LAGTLSKKHSEFARRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
GC P E L Y +++LQKKIRR
Sbjct: 135 GCAPRPETLQYALMMLQKKIRRESA 159
>gi|302523878|ref|ZP_07276220.1| NADH dehydrogenase subunit I B [Streptomyces sp. AA4]
gi|302432773|gb|EFL04589.1| NADH dehydrogenase subunit I B [Streptomyces sp. AA4]
Length = 182
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 104/151 (68%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+ S++ LV WAR SL TFGLACCA EMM RYD+ RFG A+
Sbjct: 4 EEKLPNGILLASLEGLVNWARKNSLWPATFGLACCAFEMMSVGGSRYDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG +T KMA LR++YDQM EP++V+SMG CA+ GG ++ +Y+VV+G D I
Sbjct: 64 PRQADLMIVAGRVTQKMAPVLRQIYDQMAEPKWVLSMGVCASSGGMFN-NYAVVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E L+ IL L KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKIQDE 153
>gi|77164635|ref|YP_343160.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707]
gi|254434174|ref|ZP_05047682.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
[Nitrosococcus oceani AFC27]
gi|123594559|sp|Q3JC16|NUOB1_NITOC RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|76882949|gb|ABA57630.1| NADH dehydrogenase subunit B [Nitrosococcus oceani ATCC 19707]
gi|207090507|gb|EDZ67778.1| NADH-quinone oxidoreductase, B subunit subfamily, putative
[Nitrosococcus oceani AFC27]
Length = 212
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 113/175 (64%), Gaps = 6/175 (3%)
Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
++ Q++ S+E+ F + + L + LV W R SL FGL+CC VE
Sbjct: 4 RLSKPQAATSIEQSKGSF----EDAIRRNLLFAQLQDLVAWGRKNSLWPYNFGLSCCYVE 59
Query: 69 MMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
M+ + +YD+ RFG RA+PR++D+M+++GT+ KMA ++R+Y+QM EPR+VISMG
Sbjct: 60 MVTSFTSKYDIARFGAEVIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMG 119
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
SCAN GG Y YSVV+G D+ +PVD+YVPGCPP +A + G+LLLQ+ I +
Sbjct: 120 SCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPDAFLEGLLLLQEAIGKEQR 173
>gi|68565803|sp|Q85FL6|NDHK_ADICA RecName: Full=NAD(P)H-quinone oxidoreductase subunit K,
chloroplastic; AltName: Full=NAD(P)H dehydrogenase
subunit K; AltName: Full=NADH-plastoquinone
oxidoreductase subunit K
gi|48476003|gb|AAP29396.2| NADH dehydrogenase subunit K [Adiantum capillus-veneris]
Length = 250
Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats.
Identities = 68/149 (45%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
+ S+ W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+
Sbjct: 39 DSIFMASISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADL 98
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDI 154
++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVDI
Sbjct: 99 IVTAGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDI 158
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
Y+PGCPP EA++ + L+KKI R V
Sbjct: 159 YLPGCPPKPEAIMDAVTKLRKKIARNRFV 187
>gi|307822802|ref|ZP_07653033.1| NADH-quinone oxidoreductase, B subunit [Methylobacter tundripaludum
SV96]
gi|307736406|gb|EFO07252.1| NADH-quinone oxidoreductase, B subunit [Methylobacter tundripaludum
SV96]
Length = 212
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+ + + E + FL ++ +V W ++ S+ FGL+CC VEM A
Sbjct: 6 TKAETDPAPQSGQQTYEEALRRNFLFARLEDMVAWGQSNSVWPFNFGLSCCYVEMATAFT 65
Query: 75 PRYDLERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
R+D+ RFG R SPRQ+D+++++GT+ KMA ++R+YDQ+ EPR+VISMGSCAN G
Sbjct: 66 SRHDIARFGSEVIRGSPRQADLIVISGTVFRKMAPVVKRLYDQLLEPRWVISMGSCANSG 125
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+YVPGCPP EAL+ G++LLQ I +
Sbjct: 126 GMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEALLQGLMLLQDAIGKERR 173
>gi|134103329|ref|YP_001108990.1| NADH dehydrogenase subunit B [Saccharopolyspora erythraea NRRL
2338]
gi|291004452|ref|ZP_06562425.1| NADH dehydrogenase subunit B [Saccharopolyspora erythraea NRRL
2338]
gi|238065203|sp|A4FPU0|NUOB_SACEN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|133915952|emb|CAM06065.1| NADH dehydrogenase I chain B [Saccharopolyspora erythraea NRRL
2338]
Length = 220
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 80/151 (52%), Positives = 105/151 (69%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+ +V++LV W R S+ FGLACCA+EMM RYD+ RFG A+
Sbjct: 4 EEKLPNGILLANVEKLVNWTRKTSVWPAAFGLACCAIEMMTVGGSRYDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+M+VAG +TNKMA LR+VYDQMPEPR+VI+MG CA+ GG ++ +Y+VV+G D +
Sbjct: 64 PRQADLMVVAGRVTNKMAPVLRQVYDQMPEPRWVIAMGVCASSGGMFN-NYAVVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E L+ IL L KI
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAILKLHAKIMDE 153
>gi|319955917|ref|YP_004167180.1| NADH dehydrogenase subunit b [Nitratifractor salsuginis DSM 16511]
gi|319418321|gb|ADV45431.1| NADH dehydrogenase subunit B [Nitratifractor salsuginis DSM 16511]
Length = 170
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 82/143 (57%), Positives = 109/143 (76%), Gaps = 1/143 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+T+VD+L+ W R+ SL +T+GLACCA+EMM + R+D +R G RASPRQ+DVMI
Sbjct: 16 VALTTVDKLLNWGRSNSLWPLTYGLACCAIEMMASGASRFDFDRMGVIFRASPRQADVMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTL+ K A RR+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVDIY+P
Sbjct: 76 LAGTLSKKHAEFARRLYDQMAEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDIYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
GC P E L Y +++LQKKIRR
Sbjct: 135 GCAPRPETLQYAMMMLQKKIRRE 157
>gi|82777695|ref|YP_404044.1| NADH dehydrogenase subunit B [Shigella dysenteriae Sd197]
gi|309785009|ref|ZP_07679642.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1617]
gi|123562059|sp|Q32DQ2|NUOB_SHIDS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81241843|gb|ABB62553.1| NADH dehydrogenase I chain B [Shigella dysenteriae Sd197]
gi|308927379|gb|EFP72853.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1617]
Length = 220
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+ +
Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72
Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
+D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN
Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIAKERR 181
>gi|326777317|ref|ZP_08236582.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus
XylebKG-1]
gi|326657650|gb|EGE42496.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus
XylebKG-1]
Length = 230
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 84/185 (45%), Positives = 111/185 (60%), Gaps = 2/185 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
MGLT+ Q + + ++ W R SL F
Sbjct: 1 MGLTSRPTPASR-QPASPPPADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFNF 59
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
GLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+KMA A++R+Y+QMPE
Sbjct: 60 GLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMPE 119
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI R
Sbjct: 120 PKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAR 179
Query: 180 VGNVK 184
+
Sbjct: 180 ESLAE 184
>gi|154148789|ref|YP_001405790.1| NADH dehydrogenase subunit B [Campylobacter hominis ATCC BAA-381]
gi|218527983|sp|A7HZU9|NUOB_CAMHC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|153804798|gb|ABS51805.1| NADH-quinone oxidoreductase, b subunit [Campylobacter hominis ATCC
BAA-381]
Length = 169
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 83/147 (56%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++T++D+LV W R+ SL M +GLACCA+EMM RYD +RFG RAS +QS+VM+
Sbjct: 16 VVLTTIDKLVNWGRSNSLWAMNYGLACCAIEMMATGASRYDFDRFGTIFRASAKQSEVMV 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTL+ K A RR+YD MPEP++VISMGSCAN GG ++ +Y+VV+GCDRI+PVDIY+P
Sbjct: 76 IAGTLSKKHAELARRLYDAMPEPKWVISMGSCANTGGMFN-TYAVVQGCDRIIPVDIYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y +++LQKKIRR +
Sbjct: 135 GCAPRPETLQYALMILQKKIRREKANR 161
>gi|86359327|ref|YP_471219.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN
42]
gi|123510666|sp|Q2K3U4|NUOB3_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit B 3; AltName:
Full=NADH dehydrogenase I subunit B 3; AltName:
Full=NDH-1 subunit B 3
gi|86283429|gb|ABC92492.1| NADH-ubiquinone oxidoreductase chain B protein [Rhizobium etli CFN
42]
Length = 167
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ L T+ D ++ W+R+ +L TFG+ACCA+EM+ A RYDL+RFG R
Sbjct: 2 GAVNNAIRDSVLFTTADSVINWSRSSALWPETFGIACCAIEMISAGCARYDLDRFGVVFR 61
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
SPRQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G +
Sbjct: 62 PSPRQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSE 120
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVD++VPGCPP EAL++G LLLQ+KI+R +
Sbjct: 121 TFVPVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 156
>gi|317051070|ref|YP_004112186.1| NADH-quinone oxidoreductase subunit B [Desulfurispirillum indicum
S5]
gi|316946154|gb|ADU65630.1| NADH-quinone oxidoreductase, B subunit [Desulfurispirillum indicum
S5]
Length = 183
Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats.
Identities = 69/149 (46%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94
+ T++D +V WAR SL MTFG ACCA+E M A+ ++DL RFG R SPRQ+D
Sbjct: 13 DSVITTTMDAVVNWARQYSLWPMTFGTACCAIEFMSAAASQHDLSRFGAEVIRFSPRQAD 72
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+++VAGT++ K A L+R+Y+QMP+P++VISMG+CA GG ++ +Y ++G D+++PVD
Sbjct: 73 LLLVAGTISMKQAPVLKRIYEQMPDPKWVISMGACACSGG-FYDNYCTLQGIDQVIPVDA 131
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
Y+ GCPP EA++ + L+QKK++ +
Sbjct: 132 YISGCPPRPEAILDALFLIQKKLKEETVL 160
>gi|326559970|gb|EGE10368.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 46P47B1]
gi|326567656|gb|EGE17764.1| NADH dehydrogenase subunit B [Moraxella catarrhalis 12P80B1]
gi|326569465|gb|EGE19525.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC8]
gi|326572775|gb|EGE22761.1| NADH dehydrogenase subunit B [Moraxella catarrhalis BC7]
Length = 223
Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats.
Identities = 84/185 (45%), Positives = 104/185 (56%), Gaps = 11/185 (5%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWM 58
LT NQ S E +D I+ K + + L W R SL
Sbjct: 5 LTKPNQH-TKQYPQQSREIIDD----ITQAEVDKNVFLGRLSDLTHNLANWGRKNSLWPF 59
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
FG +CC VE +DL RFG RASPRQ+DVMIVAGT KMA + R+Y+QM
Sbjct: 60 NFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVILRLYEQM 119
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP++VISMG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI ++LLQ I
Sbjct: 120 LEPKWVISMGACANSGGMY-DIYSVVQGVDKILPVDVYVPGCPPRPEALIQALMLLQNSI 178
Query: 178 RRVGN 182
+
Sbjct: 179 QEERR 183
>gi|187736633|ref|YP_001878745.1| NADH-quinone oxidoreductase, B subunit [Akkermansia muciniphila
ATCC BAA-835]
gi|238065050|sp|B2UPT6|NUOB_AKKM8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|187426685|gb|ACD05964.1| NADH-quinone oxidoreductase, B subunit [Akkermansia muciniphila
ATCC BAA-835]
Length = 193
Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats.
Identities = 76/161 (47%), Positives = 108/161 (67%), Gaps = 2/161 (1%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG- 83
+ + F+ T++D + W R SL M GL+CCA+E M + RYDL RFG
Sbjct: 10 YETGVLDSNAEGNFVYTTLDAAINWIRKNSLWPMPMGLSCCAIEFMAVACSRYDLSRFGS 69
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
R SPRQ+DVMIVAGT+T KMA A+RR++DQMPEP++ I+MG+CA+ GG + SYSV+
Sbjct: 70 EVTRFSPRQADVMIVAGTVTYKMALAVRRIWDQMPEPKWCIAMGACASTGGMFR-SYSVL 128
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+G D+I+PVD+Y+ GCPP EA++ +L L+KK+ +
Sbjct: 129 QGVDKILPVDVYISGCPPRPEAILEALLTLRKKLDTQQPAR 169
>gi|46134967|ref|XP_389508.1| hypothetical protein FG09332.1 [Gibberella zeae PH-1]
Length = 233
Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 110/143 (76%), Positives = 124/143 (86%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+ +T+VD+L WARTGSL MTF LACC +EMM SMPRYD +R G RASPRQSDVMI
Sbjct: 81 YALTTVDKLANWARTGSLWPMTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQSDVMI 140
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLTNKMA ALR+VYDQMPEPR+VISMGSCANGGGYY+YSYSVVRG DRI+PVDIYVP
Sbjct: 141 VAGTLTNKMAPALRQVYDQMPEPRWVISMGSCANGGGYYYYSYSVVRGVDRIIPVDIYVP 200
Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
GCPPTAEAL+YG+ LQ+KIR+
Sbjct: 201 GCPPTAEALMYGVFQLQRKIRKE 223
>gi|302035622|ref|YP_003795944.1| NADH-quinone oxidoreductase subunit B [Candidatus Nitrospira
defluvii]
gi|300603686|emb|CBK40017.1| NADH-quinone oxidoreductase, subunit B [Candidatus Nitrospira
defluvii]
Length = 175
Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 89/146 (60%), Positives = 110/146 (75%), Gaps = 2/146 (1%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVM 96
+ +V++ V WAR GSL MTFGLACCA+EM+ A RYD++R+G RASPRQSD+M
Sbjct: 17 VITLTVEKAVNWARKGSLWPMTFGLACCAIEMIAAVSSRYDMDRYGAGVFRASPRQSDLM 76
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGT+ +MA +R++YDQMPEP+YVI+MGSCA G Y SYSVV+G DR VPVDIYV
Sbjct: 77 IVAGTVCRRMAPVIRKIYDQMPEPKYVIAMGSCATSGNIY-DSYSVVQGVDRFVPVDIYV 135
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGN 182
PGCPPT EAL GIL LQ++I +
Sbjct: 136 PGCPPTPEALFDGILKLQERIMQKRV 161
>gi|256380664|ref|YP_003104324.1| NADH dehydrogenase subunit B [Actinosynnema mirum DSM 43827]
gi|255924967|gb|ACU40478.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM
43827]
Length = 182
Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 87/151 (57%), Positives = 108/151 (71%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+ SV++LV W R SL TFGLACCA+EMM PRYDL RFG RAS
Sbjct: 4 EEKLPNGVLLVSVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG +TNKMA LR++YDQMPEPR+V++MG CA+ GG ++ +Y+VV+G D I
Sbjct: 64 PRQADLMIVAGRVTNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFN-NYAVVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E LI IL + KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKIMDE 153
>gi|53804524|ref|YP_113819.1| NADH dehydrogenase subunit B [Methylococcus capsulatus str. Bath]
gi|81682183|sp|Q608X8|NUOB_METCA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|53758285|gb|AAU92576.1| NADH dehydrogenase I, B subunit [Methylococcus capsulatus str.
Bath]
Length = 213
Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 73/169 (43%), Positives = 105/169 (62%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+ + E + L +D LV W R S+ FGL+CC VEM A
Sbjct: 6 TRADQTPAPKPGGQTYEEALRRNILFARLDDLVRWGRKNSIWPFNFGLSCCYVEMATAFT 65
Query: 75 PRYDLERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
R+D+ RFG RASPRQ+D+M+++GT+ KMA ++ +YDQ+ EP+++ISMGSCAN G
Sbjct: 66 SRFDIARFGSEVIRASPRQADLMVISGTVFRKMAPVVKHLYDQLLEPKWIISMGSCANSG 125
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+YVPGCPP EAL+ G+++LQ+ + +
Sbjct: 126 GMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEALLEGLMMLQESVGKEAR 173
>gi|284106847|ref|ZP_06386290.1| NADH-quinone oxidoreductase, B subunit [Candidatus Poribacteria sp.
WGA-A3]
gi|283830026|gb|EFC34302.1| NADH-quinone oxidoreductase, B subunit [Candidatus Poribacteria sp.
WGA-A3]
Length = 159
Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 87/149 (58%), Positives = 111/149 (74%), Gaps = 2/149 (1%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93
+ T++D LV+W R +L MTFGLACCA+EM+ + RYD++RFG RASPRQS
Sbjct: 9 DSNIITTNLDYLVSWCRKSALWPMTFGLACCAIEMIASVSSRYDIDRFGAGVFRASPRQS 68
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGT+ KMA +RR+YDQM EPRYVISMGSCA G +Y+ SYSVV+G D+IVPVD
Sbjct: 69 DVMIVAGTVCRKMAPVIRRIYDQMAEPRYVISMGSCATSGNHYN-SYSVVQGVDQIVPVD 127
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGN 182
+YV GCPP EAL+ ++ LQ+KI++
Sbjct: 128 VYVAGCPPRPEALLDALIKLQEKIQKEKV 156
>gi|148657777|ref|YP_001277982.1| NADH dehydrogenase subunit B [Roseiflexus sp. RS-1]
gi|238065039|sp|A5UZH9|NUOB2_ROSS1 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|148569887|gb|ABQ92032.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus sp. RS-1]
Length = 167
Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats.
Identities = 79/155 (50%), Positives = 111/155 (71%), Gaps = 2/155 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-AP 86
I + G + S++QLV W+R+ ++ + FGLACCA+EMM A YDL RFG
Sbjct: 2 GIEQKAGDMGIVTASLEQLVNWSRSSAMWPLLFGLACCAIEMMGAQGANYDLSRFGMEIN 61
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+D+MIVAG ++ KMA +RR+YDQM +P++VI+MG CA GG ++ +Y++V+G
Sbjct: 62 RASPRQADLMIVAGRVSRKMAPVVRRLYDQMADPKWVIAMGDCAACGGVFN-NYAIVQGV 120
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
D IVPVD+YV GCPP EALI GI+ L +K++R+
Sbjct: 121 DEIVPVDVYVAGCPPRPEALIDGIIHLHEKVKRMR 155
>gi|154282161|ref|XP_001541893.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor [Ajellomyces capsulatus NAm1]
gi|150412072|gb|EDN07460.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor [Ajellomyces capsulatus NAm1]
Length = 242
Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats.
Identities = 99/181 (54%), Positives = 127/181 (70%), Gaps = 1/181 (0%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
T + + +E+ + + G + S+D + WAR GSL ++ GLAC
Sbjct: 57 TPRENTANVPDVARMERNASLLPSQDEKTGAMGHFLGSIDAVTNWARQGSLWPVSLGLAC 116
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
C VEMM SMPRYD +R G RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++VI
Sbjct: 117 CGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVI 176
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK-IRRVGNV 183
SMGSCANGGGYYHYSYSVVRG DR++PVD+++PGCPPTAEAL+Y + +L+KK I
Sbjct: 177 SMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPTAEALLYAMAVLRKKSISNTKIT 236
Query: 184 K 184
+
Sbjct: 237 R 237
>gi|251773166|gb|EES53719.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum
ferrodiazotrophum]
Length = 165
Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats.
Identities = 88/142 (61%), Positives = 110/142 (77%), Gaps = 2/142 (1%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
V+ +V W+R +L MTFGLACCA+EMM A R+D++RFG RASPRQSD+MIVAGT
Sbjct: 22 VNDIVNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMIVAGT 81
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
LT KMA +R++YDQMPEPRYVI+MGSCA G Y SYSVV+G DR++PVD+YVPGCPP
Sbjct: 82 LTRKMAPVVRKIYDQMPEPRYVIAMGSCATSGNIY-DSYSVVQGVDRLIPVDVYVPGCPP 140
Query: 162 TAEALIYGILLLQKKIRRVGNV 183
EAL+ G++ LQ+KI + V
Sbjct: 141 RPEALLDGLIKLQEKIMQDKPV 162
>gi|218527950|sp|Q0IDJ3|NDHK_SYNS3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K; AltName:
Full=NAD(P)H dehydrogenase I subunit K; AltName:
Full=NDH-1 subunit K; Short=NDH-K
Length = 253
Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats.
Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 3/182 (1%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITH--KGFLVTSVDQLVTWARTGSLMWMTFG 61
+ + + + S V + + ++TS+D L WAR SL + +G
Sbjct: 6 DSPSIQSLRDLREASCGPVGGAAEGSPTVTNDLSENVILTSLDDLHNWARLSSLWPLLYG 65
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
ACC +E R+D +RFG PR+SPRQ+D++IVAGT+T KM AL R+Y+QMPEP+
Sbjct: 66 TACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMGPALVRLYEQMPEPK 125
Query: 122 YVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 126 YVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGNE 185
Query: 181 GN 182
Sbjct: 186 SV 187
>gi|284992924|ref|YP_003411478.1| NADH-quinone oxidoreductase subunit B [Geodermatophilus obscurus
DSM 43160]
gi|284066169|gb|ADB77107.1| NADH-quinone oxidoreductase, B subunit [Geodermatophilus obscurus
DSM 43160]
Length = 226
Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats.
Identities = 83/151 (54%), Positives = 106/151 (70%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+TSV++LV W R SL TFGLACCA+EMM RYDL RFG RAS
Sbjct: 4 EEKLPSGVLLTSVEKLVNWTRKSSLWPATFGLACCAIEMMATGAGRYDLARFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQMPEPR+V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E L IL L KI
Sbjct: 123 VPVDMYLPGCPPRPEMLTDAILKLHHKIMHE 153
>gi|317121592|ref|YP_004101595.1| NADH-quinone oxidoreductase subunit beta [Thermaerobacter
marianensis DSM 12885]
gi|315591572|gb|ADU50868.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter marianensis
DSM 12885]
Length = 350
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 81/173 (46%), Positives = 115/173 (66%), Gaps = 6/173 (3%)
Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
+I + ++ + + G L T + +LV W R S+ ++ FGLACCA+EM
Sbjct: 180 VIRRLDAHPSMRIPGVWQWLP------GILTTRLQELVNWGRANSMWYLLFGLACCAIEM 233
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
M A R DL+R G RASPRQ+D+MIV+GT+T KMA ++ +YDQM EP++V+SMG+C
Sbjct: 234 MAAGGTRTDLDRIGSVFRASPRQADLMIVSGTVTEKMAPVVKTLYDQMAEPKFVVSMGAC 293
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
A GG Y+ Y+VV G D+I+PVD+YV GCPP EAL++ IL LQ K+R++G
Sbjct: 294 ATNGGPYYQGYNVVDGVDKIIPVDVYVAGCPPRPEALVHAILKLQDKVRKIGV 346
>gi|397899|emb|CAA48361.1| NADH dehydrogenase I, subunit nuoB [Escherichia coli]
Length = 220
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 74/170 (43%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+
Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTLF 72
Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
+D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN
Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 181
>gi|307637933|gb|ADN80383.1| NADH-ubiquinone oxidoreductase chain B [Helicobacter pylori 908]
Length = 159
Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats.
Identities = 84/147 (57%), Positives = 112/147 (76%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+++++D+L+ W R+ SL +T+GLA CA+EMM R+D +RFG RASPRQSDVMI
Sbjct: 6 VILSTLDKLLNWGRSNSLWPLTYGLAWCAIEMMATGGSRFDFDRFGTIFRASPRQSDVMI 65
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTLT K A +RR+YDQMPEP++VISMGSCAN GG ++ +Y+ V+G DRIVPVDIY+P
Sbjct: 66 IAGTLTKKHAEFMRRLYDQMPEPKWVISMGSCANTGGMFN-TYATVQGADRIVPVDIYLP 124
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L Y +++LQ KIRR +K
Sbjct: 125 GCAPRPETLQYALMVLQDKIRRSKAIK 151
>gi|116622878|ref|YP_825034.1| NADH-quinone oxidoreductase subunit B [Candidatus Solibacter
usitatus Ellin6076]
gi|122253898|sp|Q020B6|NUOB1_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|116226040|gb|ABJ84749.1| NADH-quinone oxidoreductase, B subunit [Candidatus Solibacter
usitatus Ellin6076]
Length = 188
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 78/150 (52%), Positives = 111/150 (74%), Gaps = 2/150 (1%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQS 93
+ F+ T+VD + WAR +L +TFGLACCA+EM+ +S R+D+ RFG R SPRQS
Sbjct: 10 EQNFITTNVDHVFNWARKSALWPLTFGLACCAIEMIASSTSRFDIARFGAEVFRPSPRQS 69
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
D+MIVAGT+T KMA L+R++DQMP+P++ ISMG+C++ GG ++ +Y+V++G D+IVPVD
Sbjct: 70 DLMIVAGTVTLKMAPVLKRIWDQMPDPKWCISMGACSSVGGPFN-TYAVLQGVDKIVPVD 128
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+YV GCPP E L Y +L LQ KI + +
Sbjct: 129 VYVTGCPPRPENLFYALLKLQDKIDTMTTL 158
>gi|15832425|ref|NP_311198.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. Sakai]
gi|16130222|ref|NP_416790.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
substr. MG1655]
gi|24113659|ref|NP_708169.1| NADH dehydrogenase subunit B [Shigella flexneri 2a str. 301]
gi|26248674|ref|NP_754714.1| NADH dehydrogenase subunit B [Escherichia coli CFT073]
gi|30063713|ref|NP_837884.1| NADH dehydrogenase subunit B [Shigella flexneri 2a str. 2457T]
gi|74312805|ref|YP_311224.1| NADH dehydrogenase subunit B [Shigella sonnei Ss046]
gi|82544765|ref|YP_408712.1| NADH dehydrogenase subunit B [Shigella boydii Sb227]
gi|89109105|ref|AP_002885.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
substr. W3110]
gi|91211579|ref|YP_541565.1| NADH dehydrogenase subunit B [Escherichia coli UTI89]
gi|110642491|ref|YP_670221.1| NADH dehydrogenase subunit B [Escherichia coli 536]
gi|110806250|ref|YP_689770.1| NADH dehydrogenase subunit B [Shigella flexneri 5 str. 8401]
gi|117624476|ref|YP_853389.1| NADH dehydrogenase subunit B [Escherichia coli APEC O1]
gi|157155733|ref|YP_001463630.1| NADH dehydrogenase subunit B [Escherichia coli E24377A]
gi|157161775|ref|YP_001459093.1| NADH dehydrogenase subunit B [Escherichia coli HS]
gi|168748136|ref|ZP_02773158.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4113]
gi|168755039|ref|ZP_02780046.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4401]
gi|168761274|ref|ZP_02786281.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4501]
gi|168767913|ref|ZP_02792920.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4486]
gi|168772987|ref|ZP_02797994.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4196]
gi|168780142|ref|ZP_02805149.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4076]
gi|168787194|ref|ZP_02812201.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC869]
gi|168798457|ref|ZP_02823464.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC508]
gi|170019404|ref|YP_001724358.1| NADH dehydrogenase subunit B [Escherichia coli ATCC 8739]
gi|170081904|ref|YP_001731224.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
substr. DH10B]
gi|170681065|ref|YP_001744485.1| NADH dehydrogenase subunit B [Escherichia coli SMS-3-5]
gi|170767483|ref|ZP_02901936.1| NADH-quinone oxidoreductase, B subunit [Escherichia albertii
TW07627]
gi|187732051|ref|YP_001881108.1| NADH dehydrogenase subunit B [Shigella boydii CDC 3083-94]
gi|188491795|ref|ZP_02999065.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 53638]
gi|191166481|ref|ZP_03028311.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B7A]
gi|191169994|ref|ZP_03031548.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli F11]
gi|193062269|ref|ZP_03043364.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E22]
gi|193068244|ref|ZP_03049208.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E110019]
gi|194427226|ref|ZP_03059777.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B171]
gi|194433374|ref|ZP_03065654.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1012]
gi|194435968|ref|ZP_03068070.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 101-1]
gi|195935664|ref|ZP_03081046.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. EC4024]
gi|208808363|ref|ZP_03250700.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4206]
gi|208814079|ref|ZP_03255408.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4045]
gi|208821251|ref|ZP_03261571.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4042]
gi|209400872|ref|YP_002271696.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4115]
gi|209919735|ref|YP_002293819.1| NADH dehydrogenase subunit B [Escherichia coli SE11]
gi|215487500|ref|YP_002329931.1| NADH dehydrogenase subunit B [Escherichia coli O127:H6 str.
E2348/69]
gi|217327914|ref|ZP_03443997.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. TW14588]
gi|218548264|ref|YP_002382055.1| NADH dehydrogenase subunit B [Escherichia fergusonii ATCC 35469]
gi|218554843|ref|YP_002387756.1| NADH dehydrogenase subunit B [Escherichia coli IAI1]
gi|218559200|ref|YP_002392113.1| NADH dehydrogenase subunit B [Escherichia coli S88]
gi|218690447|ref|YP_002398659.1| NADH dehydrogenase subunit B [Escherichia coli ED1a]
gi|218695886|ref|YP_002403553.1| NADH dehydrogenase subunit B [Escherichia coli 55989]
gi|218700761|ref|YP_002408390.1| NADH dehydrogenase subunit B [Escherichia coli IAI39]
gi|218705817|ref|YP_002413336.1| NADH dehydrogenase subunit B [Escherichia coli UMN026]
gi|227887343|ref|ZP_04005148.1| NADH dehydrogenase subunit B [Escherichia coli 83972]
gi|237704761|ref|ZP_04535242.1| trifunctional NADH dehydrogenase I subunit B/C/D [Escherichia sp.
3_2_53FAA]
gi|238901462|ref|YP_002927258.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli BW2952]
gi|253772791|ref|YP_003035622.1| NADH dehydrogenase subunit B [Escherichia coli 'BL21-Gold(DE3)pLysS
AG']
gi|254162296|ref|YP_003045404.1| NADH dehydrogenase subunit B [Escherichia coli B str. REL606]
gi|254794179|ref|YP_003079016.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str.
TW14359]
gi|256017557|ref|ZP_05431422.1| NADH dehydrogenase subunit B [Shigella sp. D9]
gi|256022029|ref|ZP_05435894.1| NADH dehydrogenase subunit B [Escherichia sp. 4_1_40B]
gi|260844874|ref|YP_003222652.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O103:H2
str. 12009]
gi|260856331|ref|YP_003230222.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O26:H11
str. 11368]
gi|260869010|ref|YP_003235412.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O111:H-
str. 11128]
gi|261223259|ref|ZP_05937540.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7
str. FRIK2000]
gi|261259191|ref|ZP_05951724.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7
str. FRIK966]
gi|291283528|ref|YP_003500346.1| NADH-quinone oxidoreductase subunit B [Escherichia coli O55:H7 str.
CB9615]
gi|293405753|ref|ZP_06649745.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1412]
gi|293410647|ref|ZP_06654223.1| NADH dehydrogenase subunit B [Escherichia coli B354]
gi|293415580|ref|ZP_06658223.1| NADH-quinone oxidoreductase subunit B [Escherichia coli B185]
gi|293446624|ref|ZP_06663046.1| NADH dehydrogenase I subunit B [Escherichia coli B088]
gi|297517328|ref|ZP_06935714.1| NADH dehydrogenase subunit B [Escherichia coli OP50]
gi|298381436|ref|ZP_06991035.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1302]
gi|300818112|ref|ZP_07098324.1| NADH dehydrogenase subunit B [Escherichia coli MS 107-1]
gi|300822158|ref|ZP_07102300.1| NADH dehydrogenase subunit B [Escherichia coli MS 119-7]
gi|300896961|ref|ZP_07115442.1| NADH dehydrogenase subunit B [Escherichia coli MS 198-1]
gi|300903672|ref|ZP_07121588.1| NADH dehydrogenase subunit B [Escherichia coli MS 84-1]
gi|300924546|ref|ZP_07140510.1| NADH dehydrogenase subunit B [Escherichia coli MS 182-1]
gi|300931360|ref|ZP_07146691.1| NADH dehydrogenase subunit B [Escherichia coli MS 187-1]
gi|300936852|ref|ZP_07151741.1| NADH dehydrogenase subunit B [Escherichia coli MS 21-1]
gi|300948569|ref|ZP_07162662.1| NADH dehydrogenase subunit B [Escherichia coli MS 116-1]
gi|300956453|ref|ZP_07168742.1| NADH dehydrogenase subunit B [Escherichia coli MS 175-1]
gi|300981071|ref|ZP_07175343.1| NADH dehydrogenase subunit B [Escherichia coli MS 200-1]
gi|300983382|ref|ZP_07176566.1| NADH dehydrogenase subunit B [Escherichia coli MS 45-1]
gi|301024085|ref|ZP_07187799.1| NADH dehydrogenase subunit B [Escherichia coli MS 69-1]
gi|301049040|ref|ZP_07196025.1| NADH dehydrogenase subunit B [Escherichia coli MS 185-1]
gi|301303254|ref|ZP_07209379.1| NADH dehydrogenase subunit B [Escherichia coli MS 124-1]
gi|301328779|ref|ZP_07221827.1| NADH dehydrogenase subunit B [Escherichia coli MS 78-1]
gi|301647616|ref|ZP_07247412.1| NADH dehydrogenase subunit B [Escherichia coli MS 146-1]
gi|306814602|ref|ZP_07448764.1| NADH dehydrogenase subunit B [Escherichia coli NC101]
gi|307138951|ref|ZP_07498307.1| NADH dehydrogenase subunit B [Escherichia coli H736]
gi|307311153|ref|ZP_07590797.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli W]
gi|309793166|ref|ZP_07687594.1| NADH dehydrogenase subunit B [Escherichia coli MS 145-7]
gi|312967585|ref|ZP_07781800.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 2362-75]
gi|312973454|ref|ZP_07787626.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1827-70]
gi|331642925|ref|ZP_08344060.1| NADH dehydrogenase I subunit B [Escherichia coli H736]
gi|331647942|ref|ZP_08349034.1| NADH dehydrogenase I subunit B [Escherichia coli M605]
gi|331653729|ref|ZP_08354730.1| NADH dehydrogenase I subunit B [Escherichia coli M718]
gi|331658369|ref|ZP_08359331.1| NADH dehydrogenase I subunit B [Escherichia coli TA206]
gi|331663802|ref|ZP_08364712.1| NADH dehydrogenase I subunit B [Escherichia coli TA143]
gi|331668985|ref|ZP_08369833.1| NADH dehydrogenase I subunit B [Escherichia coli TA271]
gi|331673790|ref|ZP_08374553.1| NADH dehydrogenase I subunit B [Escherichia coli TA280]
gi|331678233|ref|ZP_08378908.1| NADH dehydrogenase I subunit B [Escherichia coli H591]
gi|331683958|ref|ZP_08384554.1| NADH dehydrogenase I subunit B [Escherichia coli H299]
gi|332278567|ref|ZP_08390980.1| NADH:ubiquinone oxidoreductase chain B [Shigella sp. D9]
gi|84028744|sp|P0AFC9|NUOB_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B; AltName: Full=NUO2
gi|84028745|sp|P0AFC8|NUOB_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B; AltName: Full=NUO2
gi|84028746|sp|P0AFC7|NUOB_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B; AltName: Full=NUO2
gi|84028747|sp|P0AFD0|NUOB_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|122423113|sp|Q1R9D0|NUOB_ECOUT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|122957324|sp|Q0T2K0|NUOB_SHIF8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|123147875|sp|Q0TFF9|NUOB_ECOL5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|123559142|sp|Q31YH4|NUOB_SHIBS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|123616691|sp|Q3YZS3|NUOB_SHISS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065125|sp|A7ZPA1|NUOB_ECO24 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065126|sp|B7UFU5|NUOB_ECO27 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065127|sp|B7MG51|NUOB_ECO45 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065128|sp|B7LBP8|NUOB_ECO55 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065129|sp|B5YXS7|NUOB_ECO5E RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065130|sp|B7NNW6|NUOB_ECO7I RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065131|sp|B7MXW6|NUOB_ECO81 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065132|sp|B7M5W6|NUOB_ECO8A RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065133|sp|B1X8Z9|NUOB_ECODH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065134|sp|A8A2F6|NUOB_ECOHS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065135|sp|A1ADD5|NUOB_ECOK1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065136|sp|B1IXQ5|NUOB_ECOLC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065137|sp|B7N5P9|NUOB_ECOLU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065138|sp|B6I7N7|NUOB_ECOSE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065139|sp|B1LLP0|NUOB_ECOSM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065143|sp|B7LM45|NUOB_ESCF3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065216|sp|B2TW68|NUOB_SHIB3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|259514662|sp|C4ZUD0|NUOB_ECOBW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|26109079|gb|AAN81282.1|AE016763_241 NADH dehydrogenase I chain B [Escherichia coli CFT073]
gi|1788624|gb|AAC75347.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
substr. MG1655]
gi|13362641|dbj|BAB36594.1| NADH dehydrogenase I chain B [Escherichia coli O157:H7 str. Sakai]
gi|24052724|gb|AAN43876.1| NADH dehydrogenase I chain B [Shigella flexneri 2a str. 301]
gi|30041968|gb|AAP17694.1| NADH dehydrogenase I chain B [Shigella flexneri 2a str. 2457T]
gi|73856282|gb|AAZ88989.1| NADH dehydrogenase I chain B [Shigella sonnei Ss046]
gi|81246176|gb|ABB66884.1| NADH dehydrogenase I chain B [Shigella boydii Sb227]
gi|85675345|dbj|BAA16121.2| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K12
substr. W3110]
gi|91073153|gb|ABE08034.1| NADH dehydrogenase I chain B [Escherichia coli UTI89]
gi|110344083|gb|ABG70320.1| NADH dehydrogenase I chain B [Escherichia coli 536]
gi|110615798|gb|ABF04465.1| NADH dehydrogenase I chain B [Shigella flexneri 5 str. 8401]
gi|115513600|gb|ABJ01675.1| NADH dehydrogenase subunit B [Escherichia coli APEC O1]
gi|157067455|gb|ABV06710.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli HS]
gi|157077763|gb|ABV17471.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E24377A]
gi|169754332|gb|ACA77031.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli ATCC 8739]
gi|169889739|gb|ACB03446.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli str. K-12
substr. DH10B]
gi|170123817|gb|EDS92748.1| NADH-quinone oxidoreductase, B subunit [Escherichia albertii
TW07627]
gi|170518783|gb|ACB16961.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli SMS-3-5]
gi|187429043|gb|ACD08317.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii CDC
3083-94]
gi|187771211|gb|EDU35055.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4196]
gi|188017366|gb|EDU55488.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4113]
gi|188486994|gb|EDU62097.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 53638]
gi|189001940|gb|EDU70926.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4076]
gi|189357731|gb|EDU76150.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4401]
gi|189362998|gb|EDU81417.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4486]
gi|189368240|gb|EDU86656.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4501]
gi|189372840|gb|EDU91256.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC869]
gi|189378981|gb|EDU97397.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC508]
gi|190903441|gb|EDV63160.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B7A]
gi|190909510|gb|EDV69095.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli F11]
gi|192931935|gb|EDV84534.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E22]
gi|192958523|gb|EDV88962.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E110019]
gi|194414847|gb|EDX31118.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli B171]
gi|194418468|gb|EDX34557.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae 1012]
gi|194424696|gb|EDX40681.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 101-1]
gi|208728164|gb|EDZ77765.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4206]
gi|208735356|gb|EDZ84043.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4045]
gi|208741374|gb|EDZ89056.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4042]
gi|209162272|gb|ACI39705.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. EC4115]
gi|209765078|gb|ACI80851.1| NADH dehydrogenase I chain B [Escherichia coli]
gi|209765080|gb|ACI80852.1| NADH dehydrogenase I chain B [Escherichia coli]
gi|209765082|gb|ACI80853.1| NADH dehydrogenase I chain B [Escherichia coli]
gi|209765084|gb|ACI80854.1| NADH dehydrogenase I chain B [Escherichia coli]
gi|209765086|gb|ACI80855.1| NADH dehydrogenase I chain B [Escherichia coli]
gi|209912994|dbj|BAG78068.1| NADH dehydrogenase I chain B [Escherichia coli SE11]
gi|215265572|emb|CAS09975.1| NADH: ubiquinone oxidoreductase, chain B [Escherichia coli O127:H6
str. E2348/69]
gi|217320281|gb|EEC28706.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli O157:H7
str. TW14588]
gi|218352618|emb|CAU98399.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli 55989]
gi|218355805|emb|CAQ88418.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia fergusonii
ATCC 35469]
gi|218361611|emb|CAQ99203.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli IAI1]
gi|218365969|emb|CAR03713.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli S88]
gi|218370747|emb|CAR18560.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli IAI39]
gi|218428011|emb|CAR08932.2| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli ED1a]
gi|218432914|emb|CAR13808.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli UMN026]
gi|222034043|emb|CAP76784.1| NadH-quinone oxidoreductase subunit B [Escherichia coli LF82]
gi|226901127|gb|EEH87386.1| trifunctional NADH dehydrogenase I subunit B/C/D [Escherichia sp.
3_2_53FAA]
gi|227835693|gb|EEJ46159.1| NADH dehydrogenase subunit B [Escherichia coli 83972]
gi|238861867|gb|ACR63865.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli BW2952]
gi|242377920|emb|CAQ32689.1| NADH:ubiquinone oxidoreductase, chain B, subunit of connecting
fragment of NADH dehydrogenase I and NADH:ubiquinone
oxidoreductase I [Escherichia coli BL21(DE3)]
gi|253323835|gb|ACT28437.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974197|gb|ACT39868.1| NADH dehydrogenase subunit B [Escherichia coli B str. REL606]
gi|253978364|gb|ACT44034.1| NADH dehydrogenase subunit B [Escherichia coli BL21(DE3)]
gi|254593579|gb|ACT72940.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O157:H7
str. TW14359]
gi|257754980|dbj|BAI26482.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O26:H11
str. 11368]
gi|257760021|dbj|BAI31518.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O103:H2
str. 12009]
gi|257765366|dbj|BAI36861.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli O111:H-
str. 11128]
gi|260448620|gb|ACX39042.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli DH1]
gi|281179374|dbj|BAI55704.1| NADH dehydrogenase I chain B [Escherichia coli SE15]
gi|281601728|gb|ADA74712.1| NADH-quinone oxidoreductase subunit B [Shigella flexneri 2002017]
gi|284922275|emb|CBG35360.1| NADH-quinone oxidoreductase subunit B [Escherichia coli 042]
gi|290763401|gb|ADD57362.1| NADH-quinone oxidoreductase subunit B [Escherichia coli O55:H7 str.
CB9615]
gi|291323454|gb|EFE62882.1| NADH dehydrogenase I subunit B [Escherichia coli B088]
gi|291427961|gb|EFF00988.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1412]
gi|291433228|gb|EFF06207.1| NADH-quinone oxidoreductase subunit B [Escherichia coli B185]
gi|291471115|gb|EFF13599.1| NADH dehydrogenase subunit B [Escherichia coli B354]
gi|294490294|gb|ADE89050.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli IHE3034]
gi|298278878|gb|EFI20392.1| NADH-quinone oxidoreductase subunit B [Escherichia coli FVEC1302]
gi|300299149|gb|EFJ55534.1| NADH dehydrogenase subunit B [Escherichia coli MS 185-1]
gi|300307684|gb|EFJ62204.1| NADH dehydrogenase subunit B [Escherichia coli MS 200-1]
gi|300316723|gb|EFJ66507.1| NADH dehydrogenase subunit B [Escherichia coli MS 175-1]
gi|300359229|gb|EFJ75099.1| NADH dehydrogenase subunit B [Escherichia coli MS 198-1]
gi|300396741|gb|EFJ80279.1| NADH dehydrogenase subunit B [Escherichia coli MS 69-1]
gi|300404328|gb|EFJ87866.1| NADH dehydrogenase subunit B [Escherichia coli MS 84-1]
gi|300408548|gb|EFJ92086.1| NADH dehydrogenase subunit B [Escherichia coli MS 45-1]
gi|300419264|gb|EFK02575.1| NADH dehydrogenase subunit B [Escherichia coli MS 182-1]
gi|300451917|gb|EFK15537.1| NADH dehydrogenase subunit B [Escherichia coli MS 116-1]
gi|300458039|gb|EFK21532.1| NADH dehydrogenase subunit B [Escherichia coli MS 21-1]
gi|300460822|gb|EFK24315.1| NADH dehydrogenase subunit B [Escherichia coli MS 187-1]
gi|300525288|gb|EFK46357.1| NADH dehydrogenase subunit B [Escherichia coli MS 119-7]
gi|300529256|gb|EFK50318.1| NADH dehydrogenase subunit B [Escherichia coli MS 107-1]
gi|300841428|gb|EFK69188.1| NADH dehydrogenase subunit B [Escherichia coli MS 124-1]
gi|300844841|gb|EFK72601.1| NADH dehydrogenase subunit B [Escherichia coli MS 78-1]
gi|301074243|gb|EFK89049.1| NADH dehydrogenase subunit B [Escherichia coli MS 146-1]
gi|305851996|gb|EFM52448.1| NADH dehydrogenase subunit B [Escherichia coli NC101]
gi|306908659|gb|EFN39156.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli W]
gi|307554349|gb|ADN47124.1| NADH dehydrogenase I chain B [Escherichia coli ABU 83972]
gi|307626177|gb|ADN70481.1| NADH dehydrogenase subunit B [Escherichia coli UM146]
gi|308123452|gb|EFO60714.1| NADH dehydrogenase subunit B [Escherichia coli MS 145-7]
gi|309702599|emb|CBJ01927.1| NADH-quinone oxidoreductase subunit B [Escherichia coli ETEC
H10407]
gi|310332049|gb|EFP99284.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1827-70]
gi|312287782|gb|EFR15687.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 2362-75]
gi|312946905|gb|ADR27732.1| NADH dehydrogenase subunit B [Escherichia coli O83:H1 str. NRG
857C]
gi|313651110|gb|EFS15509.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 2a str.
2457T]
gi|315061579|gb|ADT75906.1| NADH:ubiquinone oxidoreductase, chain B [Escherichia coli W]
gi|315136921|dbj|BAJ44080.1| NADH-quinone oxidoreductase subunit B [Escherichia coli DH1]
gi|315255221|gb|EFU35189.1| NADH dehydrogenase subunit B [Escherichia coli MS 85-1]
gi|315285913|gb|EFU45351.1| NADH dehydrogenase subunit B [Escherichia coli MS 110-3]
gi|315292240|gb|EFU51592.1| NADH dehydrogenase subunit B [Escherichia coli MS 153-1]
gi|315298114|gb|EFU57383.1| NADH dehydrogenase subunit B [Escherichia coli MS 16-3]
gi|315615556|gb|EFU96188.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 3431]
gi|320177169|gb|EFW52181.1| NADH-ubiquinone oxidoreductase chain B [Shigella dysenteriae CDC
74-1112]
gi|320178740|gb|EFW53703.1| NADH-ubiquinone oxidoreductase chain B [Shigella boydii ATCC 9905]
gi|320183382|gb|EFW58234.1| NADH-ubiquinone oxidoreductase chain B [Shigella flexneri CDC
796-83]
gi|320192092|gb|EFW66737.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7
str. EC1212]
gi|320196154|gb|EFW70778.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli WV_060327]
gi|320199875|gb|EFW74464.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli EC4100B]
gi|320641114|gb|EFX10593.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. G5101]
gi|320646502|gb|EFX15421.1| NADH dehydrogenase subunit B [Escherichia coli O157:H- str. 493-89]
gi|320651599|gb|EFX19979.1| NADH dehydrogenase subunit B [Escherichia coli O157:H- str. H 2687]
gi|320657351|gb|EFX25153.1| NADH dehydrogenase subunit B [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320663053|gb|EFX30370.1| NADH dehydrogenase subunit B [Escherichia coli O55:H7 str. USDA
5905]
gi|320667871|gb|EFX34779.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 str. LSU-61]
gi|323156437|gb|EFZ42592.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli EPECa14]
gi|323161621|gb|EFZ47506.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli E128010]
gi|323168543|gb|EFZ54223.1| NADH-quinone oxidoreductase, B subunit [Shigella sonnei 53G]
gi|323171969|gb|EFZ57613.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli LT-68]
gi|323176788|gb|EFZ62378.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1180]
gi|323184394|gb|EFZ69770.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli 1357]
gi|323187988|gb|EFZ73283.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli RN587/1]
gi|323377841|gb|ADX50109.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli KO11]
gi|323936577|gb|EGB32864.1| NADH-quinone oxidoreductase [Escherichia coli E1520]
gi|323941016|gb|EGB37203.1| NADH-quinone oxidoreductase [Escherichia coli E482]
gi|323944800|gb|EGB40866.1| NADH-quinone oxidoreductase [Escherichia coli H120]
gi|323952080|gb|EGB47954.1| NADH-quinone oxidoreductase [Escherichia coli H252]
gi|323956053|gb|EGB51806.1| NADH-quinone oxidoreductase [Escherichia coli H263]
gi|323961470|gb|EGB57080.1| NADH-quinone oxidoreductase [Escherichia coli H489]
gi|323967728|gb|EGB63140.1| NADH-quinone oxidoreductase [Escherichia coli M863]
gi|323973008|gb|EGB68202.1| NADH-quinone oxidoreductase [Escherichia coli TA007]
gi|323977512|gb|EGB72598.1| NADH-quinone oxidoreductase [Escherichia coli TW10509]
gi|324006663|gb|EGB75882.1| NADH dehydrogenase subunit B [Escherichia coli MS 57-2]
gi|324013173|gb|EGB82392.1| NADH dehydrogenase subunit B [Escherichia coli MS 60-1]
gi|324020883|gb|EGB90102.1| NADH dehydrogenase subunit B [Escherichia coli MS 117-3]
gi|324112819|gb|EGC06795.1| NADH-quinone oxidoreductase [Escherichia fergusonii B253]
gi|324117835|gb|EGC11734.1| NADH-quinone oxidoreductase [Escherichia coli E1167]
gi|325496678|gb|EGC94537.1| NADH dehydrogenase subunit B [Escherichia fergusonii ECD227]
gi|326339638|gb|EGD63449.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7
str. 1125]
gi|326344100|gb|EGD67861.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli O157:H7
str. 1044]
gi|327252557|gb|EGE64216.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli STEC_7v]
gi|330912112|gb|EGH40622.1| NADH-ubiquinone oxidoreductase chain B [Escherichia coli AA86]
gi|331039723|gb|EGI11943.1| NADH dehydrogenase I subunit B [Escherichia coli H736]
gi|331043666|gb|EGI15804.1| NADH dehydrogenase I subunit B [Escherichia coli M605]
gi|331048578|gb|EGI20654.1| NADH dehydrogenase I subunit B [Escherichia coli M718]
gi|331056617|gb|EGI28626.1| NADH dehydrogenase I subunit B [Escherichia coli TA206]
gi|331059601|gb|EGI31578.1| NADH dehydrogenase I subunit B [Escherichia coli TA143]
gi|331064179|gb|EGI36090.1| NADH dehydrogenase I subunit B [Escherichia coli TA271]
gi|331069063|gb|EGI40455.1| NADH dehydrogenase I subunit B [Escherichia coli TA280]
gi|331074693|gb|EGI46013.1| NADH dehydrogenase I subunit B [Escherichia coli H591]
gi|331078910|gb|EGI50112.1| NADH dehydrogenase I subunit B [Escherichia coli H299]
gi|332088417|gb|EGI93535.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii 5216-82]
gi|332090619|gb|EGI95715.1| NADH-quinone oxidoreductase, B subunit [Shigella dysenteriae
155-74]
gi|332093356|gb|EGI98414.1| NADH-quinone oxidoreductase, B subunit [Shigella boydii 3594-74]
gi|332100919|gb|EGJ04265.1| NADH:ubiquinone oxidoreductase chain B [Shigella sp. D9]
gi|332344068|gb|AEE57402.1| NADH-quinone oxidoreductase, B subunit [Escherichia coli UMNK88]
gi|332754935|gb|EGJ85300.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 4343-70]
gi|332755336|gb|EGJ85700.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-671]
gi|332756446|gb|EGJ86797.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri 2747-71]
gi|332766106|gb|EGJ96316.1| nuoB [Shigella flexneri 2930-71]
gi|333001431|gb|EGK20999.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri VA-6]
gi|333001890|gb|EGK21456.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-218]
gi|333002654|gb|EGK22214.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-272]
gi|333016449|gb|EGK35780.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-304]
gi|333016538|gb|EGK35868.1| NADH-quinone oxidoreductase, B subunit [Shigella flexneri K-227]
Length = 220
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+ +
Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72
Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
+D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN
Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 181
>gi|290489748|gb|ADD31258.1| NADH-plastoquinone oxidoreductase subunit K protein [Trochodendron
aralioides]
Length = 285
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 67/154 (43%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ T + T+ + L W+R SL + +G +CC +E R+D +R+G PR
Sbjct: 67 PLLDRTTQNSVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPR 126
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG
Sbjct: 127 SSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGV 186
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PV +Y+PGCPP EA++ I L+KK+ R
Sbjct: 187 DKLIPVHVYLPGCPPKPEAVMDAITKLRKKVSRE 220
>gi|163783891|ref|ZP_02178866.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1]
gi|159880835|gb|EDP74364.1| NADH dehydrogenase I chain B [Hydrogenivirga sp. 128-5-R1-1]
Length = 172
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 78/149 (52%), Positives = 113/149 (75%), Gaps = 1/149 (0%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
+ + G ++T+ +++++W R SL ++ GLACCA+EMM + R+D +R G R SPRQ
Sbjct: 4 MNNNGIILTTAEEVLSWGRRNSLWPVSIGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQ 63
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
SDV+IVAGT+ NK+A L+ +YDQMP+P++VISMG CA+ GG + +YS ++G DRI+PV
Sbjct: 64 SDVLIVAGTVVNKVAPMLKLIYDQMPDPKWVISMGGCASAGGPFP-TYSTLQGVDRIIPV 122
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVG 181
D+YVPGCPPT +AL++GIL LQKKI+
Sbjct: 123 DVYVPGCPPTPQALLWGILELQKKIKAKR 151
>gi|16082574|ref|NP_394429.1| NADH dehydrogenase subunit B [Thermoplasma acidophilum DSM 1728]
Length = 157
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 85/153 (55%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPR 87
+ + G + T++DQ + WAR+ SL +TFGLACCA+EMM D+ RFG R
Sbjct: 2 VKIKTGEVGVVTTTLDQALEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFR 61
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
SPRQSD+MIV+GT+T KMA +RR+YD+MP P+YVI+ G C GG Y+ YSVV G D
Sbjct: 62 NSPRQSDLMIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVD 121
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R+VPVD+Y+PGCPPT EAL GI+LLQKKIR
Sbjct: 122 RVVPVDVYIPGCPPTPEALTNGIILLQKKIRGE 154
>gi|301026957|ref|ZP_07190350.1| NADH dehydrogenase subunit B [Escherichia coli MS 196-1]
gi|299879504|gb|EFI87715.1| NADH dehydrogenase subunit B [Escherichia coli MS 196-1]
Length = 220
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+ +
Sbjct: 14 NDRYPLQKQEIVTDPLDQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72
Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
+D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN
Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 181
>gi|113954408|ref|YP_729479.1| NADH dehydrogenase subunit B [Synechococcus sp. CC9311]
gi|113881759|gb|ABI46717.1| NADH dehydrogenase I chain B or NdhK [Synechococcus sp. CC9311]
Length = 259
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 3/182 (1%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITH--KGFLVTSVDQLVTWARTGSLMWMTFG 61
+ + + + S V + + ++TS+D L WAR SL + +G
Sbjct: 12 DSPSIQSLRDLREASCGPVGGAAEGSPTVTNDLSENVILTSLDDLHNWARLSSLWPLLYG 71
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
ACC +E R+D +RFG PR+SPRQ+D++IVAGT+T KM AL R+Y+QMPEP+
Sbjct: 72 TACCFIEFAALLGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMGPALVRLYEQMPEPK 131
Query: 122 YVISMGSCANGGGYYH-YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
YVI+MG+C GG + S + VRG D+++PVD+Y+PGCPP EA+ ++ L+KK+
Sbjct: 132 YVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKVGNE 191
Query: 181 GN 182
Sbjct: 192 SV 193
>gi|193215671|ref|YP_001996870.1| NADH-quinone oxidoreductase subunit B [Chloroherpeton thalassium
ATCC 35110]
gi|238065009|sp|B3QUS2|NUOB1_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|193089148|gb|ACF14423.1| NADH-quinone oxidoreductase, B subunit [Chloroherpeton thalassium
ATCC 35110]
Length = 186
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 75/147 (51%), Positives = 110/147 (74%), Gaps = 2/147 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94
GFL T++D + W R S+ M GL+CCA+EMM + PRYD+ RFG R SPRQSD
Sbjct: 9 DGFLTTTLDAITNWGRANSIWPMPMGLSCCAIEMMAMAGPRYDIARFGAEVFRFSPRQSD 68
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGT+T KMA+ +++++DQMPEP++ I+MG+C++ GG + SY VV+G D+ +PVD+
Sbjct: 69 LMIVAGTVTYKMATVVKKIWDQMPEPKWCIAMGACSSSGGMFR-SYPVVQGIDQFLPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVG 181
YVPGCPP +A+I+ ++ +Q+KI+R
Sbjct: 128 YVPGCPPRPDAVIHAVMEIQEKIKRQK 154
>gi|293609138|ref|ZP_06691441.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024]
gi|292829711|gb|EFF88073.1| NADH-quinone oxidoreductase [Acinetobacter sp. SH024]
gi|325121082|gb|ADY80605.1| NADH dehydrogenase I chain B [Acinetobacter calcoaceticus PHEA-2]
Length = 225
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 101/157 (64%), Gaps = 6/157 (3%)
Query: 31 SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
E +K +T ++ + V W R SL FG +CC VE +DL RFG
Sbjct: 28 EEEVNKNVFMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEV 87
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G
Sbjct: 88 IRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQG 146
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+I+PVD+YVPGCPP EALI ++LLQ +I+
Sbjct: 147 VDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLERR 183
>gi|283786355|ref|YP_003366220.1| NADH-quinone oxidoreductase subunit B [Citrobacter rodentium
ICC168]
gi|282949809|emb|CBG89432.1| NADH-quinone oxidoreductase subunit B [Citrobacter rodentium
ICC168]
Length = 220
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 3/170 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
L+K + + E+ +K + + LV W R S+ FGL+CC VEM+ +
Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLHDLVNWGRKNSIWPYNFGLSCCYVEMVTSF 72
Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
+D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN
Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I +
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSIGKERR 181
>gi|221633754|ref|YP_002522980.1| NADH dehydrogenase i subunit B [Thermomicrobium roseum DSM 5159]
gi|238065220|sp|B9L170|NUOB_THERP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|221156029|gb|ACM05156.1| nadh dehydrogenase i, b subunit [Thermomicrobium roseum DSM 5159]
Length = 185
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 90/158 (56%), Positives = 121/158 (76%), Gaps = 2/158 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL-ERFGFAP 86
+S+ +H + T+ D L +WAR SL W+ FGLACCA+EM+ ++MPR+DL ERFG
Sbjct: 2 GMSAAQSHPNIITTTADWLFSWARRSSLWWLQFGLACCAIEMISSAMPRFDLAERFGMLY 61
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+D+MIVAGT+T KMA +R++YDQM +P++VISMGSCAN GG + +Y+VV+G
Sbjct: 62 RASPRQADLMIVAGTVTKKMAPVVRQLYDQMADPKWVISMGSCANVGGPF-DTYAVVQGV 120
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVDIYVPGCPP EAL YG+L LQ +I R +K
Sbjct: 121 DQVIPVDIYVPGCPPVPEALYYGVLELQNRIIRYERLK 158
>gi|260551032|ref|ZP_05825237.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter sp.
RUH2624]
gi|262280145|ref|ZP_06057930.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter
calcoaceticus RUH2202]
gi|299771418|ref|YP_003733444.1| NADH dehydrogenase subunit B [Acinetobacter sp. DR1]
gi|260405980|gb|EEW99467.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter sp.
RUH2624]
gi|262260496|gb|EEY79229.1| NADH-quinone oxidoreductase subunit C/D [Acinetobacter
calcoaceticus RUH2202]
gi|298701506|gb|ADI92071.1| NADH dehydrogenase subunit B [Acinetobacter sp. DR1]
Length = 225
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 101/157 (64%), Gaps = 6/157 (3%)
Query: 31 SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
E +K +T ++ + V W R SL FG +CC VE +DL RFG
Sbjct: 28 EEEVNKNVFMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEV 87
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G
Sbjct: 88 IRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQG 146
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+I+PVD+YVPGCPP EALI ++LLQ +I+
Sbjct: 147 VDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLERR 183
>gi|206602059|gb|EDZ38541.1| NADH dehydrogenase (ubiquinone), B subunit [Leptospirillum sp.
Group II '5-way CG']
Length = 178
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 89/142 (62%), Positives = 111/142 (78%), Gaps = 2/142 (1%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGT 101
V++++ W+R +L MTFGLACCA+EMM A R+D++RFG RASPRQSD+MIVAGT
Sbjct: 22 VNEMLNWSRKSALWPMTFGLACCAIEMMGAVASRFDIDRFGAGVFRASPRQSDLMIVAGT 81
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
LT KMA +RR+YDQMPEPRYVI+MGSCA G Y SYSVV+G DRI+PVD+YVPGCPP
Sbjct: 82 LTRKMAPVVRRIYDQMPEPRYVIAMGSCATSGNIY-DSYSVVQGVDRIIPVDVYVPGCPP 140
Query: 162 TAEALIYGILLLQKKIRRVGNV 183
EAL+ G++ LQ+KI + V
Sbjct: 141 RPEALLDGLMKLQEKIMKDRPV 162
>gi|226227067|ref|YP_002761173.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27]
gi|226090258|dbj|BAH38703.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27]
Length = 212
Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats.
Identities = 76/147 (51%), Positives = 105/147 (71%), Gaps = 2/147 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
G++ T +D LV W R GSL M FG ACCA+E M + R+DL RFG SPRQ+D
Sbjct: 24 DGWITTRLDFLVNWGRAGSLWPMPFGTACCAIEFMATAASRFDLSRFGMERLSYSPRQAD 83
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
V++ AG + K+A LRR+Y QMP+P++VISMG+CA+ GG + +Y+VV+G D I+PVD+
Sbjct: 84 VLLCAGRVPLKLAPVLRRIYQQMPQPKWVISMGACASTGGMF-DNYAVVQGIDTIIPVDV 142
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVG 181
YVPGCPP EAL++ I++LQKK+ +
Sbjct: 143 YVPGCPPRPEALMHAIIMLQKKVMQER 169
>gi|169634180|ref|YP_001707916.1| NADH dehydrogenase subunit B [Acinetobacter baumannii SDF]
gi|169797057|ref|YP_001714850.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AYE]
gi|184157030|ref|YP_001845369.1| NADH dehydrogenase subunit B [Acinetobacter baumannii ACICU]
gi|213156537|ref|YP_002318198.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AB0057]
gi|215484518|ref|YP_002326753.1| NAD(P)H-quinone oxidoreductase subunit K [Acinetobacter baumannii
AB307-0294]
gi|239501293|ref|ZP_04660603.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB900]
gi|260555651|ref|ZP_05827871.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter
baumannii ATCC 19606]
gi|301347793|ref|ZP_07228534.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB056]
gi|301510628|ref|ZP_07235865.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB058]
gi|301595913|ref|ZP_07240921.1| NADH dehydrogenase subunit B [Acinetobacter baumannii AB059]
gi|332852146|ref|ZP_08433973.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013150]
gi|332867545|ref|ZP_08437698.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013113]
gi|332872605|ref|ZP_08440573.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6014059]
gi|238065045|sp|B7GZC0|NUOB_ACIB3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065046|sp|B7I740|NUOB_ACIB5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065047|sp|B2HU42|NUOB_ACIBC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065048|sp|B0VU55|NUOB_ACIBS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065065|sp|B0V7U7|NUOB_ACIBY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065077|sp|A3M2P9|NUOB_ACIBT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|169149984|emb|CAM87878.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AYE]
gi|169152972|emb|CAP02018.1| NADH dehydrogenase I chain B [Acinetobacter baumannii]
gi|183208624|gb|ACC56022.1| NADH:ubiquinone oxidoreductase 20 kD subunit [Acinetobacter
baumannii ACICU]
gi|193076535|gb|ABO11193.2| NADH dehydrogenase I chain B [Acinetobacter baumannii ATCC 17978]
gi|213055697|gb|ACJ40599.1| NADH dehydrogenase I chain B [Acinetobacter baumannii AB0057]
gi|213987919|gb|ACJ58218.1| NAD(P)H-quinone oxidoreductase subunit K [Acinetobacter baumannii
AB307-0294]
gi|260410562|gb|EEX03860.1| NADH:ubiquinone oxidoreductase 20 kDa subunit [Acinetobacter
baumannii ATCC 19606]
gi|322506929|gb|ADX02383.1| nuoB [Acinetobacter baumannii 1656-2]
gi|323516796|gb|ADX91177.1| NADH dehydrogenase subunit B [Acinetobacter baumannii TCDC-AB0715]
gi|332729518|gb|EGJ60857.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013150]
gi|332733962|gb|EGJ65107.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6013113]
gi|332739134|gb|EGJ69993.1| NADH dehydrogenase I subunit B [Acinetobacter baumannii 6014059]
Length = 225
Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 101/157 (64%), Gaps = 6/157 (3%)
Query: 31 SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
E +K +T ++ + V W R SL FG +CC VE +DL RFG
Sbjct: 28 EEEVNKNVFMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEV 87
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G
Sbjct: 88 IRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQG 146
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+I+PVD+YVPGCPP EALI ++LLQ +I+
Sbjct: 147 VDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLERR 183
>gi|15802834|ref|NP_288861.1| NADH dehydrogenase subunit B [Escherichia coli O157:H7 EDL933]
gi|25298992|pir||D85869 NADH dehydrogenase I chain B [imported] - Escherichia coli (strain
O157:H7, substrain EDL933)
gi|12516640|gb|AAG57416.1|AE005461_1 NADH dehydrogenase I chain B [Escherichia coli O157:H7 str. EDL933]
Length = 220
Score = 208 bits (529), Expect = 4e-52, Method: Composition-based stats.
Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
L+K + + E+ +K + ++ +V W R S+ FGL+CC VEM+ +
Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72
Query: 74 MPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
+D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN
Sbjct: 73 TAVHDVARFGAXVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 181
>gi|156741308|ref|YP_001431437.1| NADH dehydrogenase subunit B [Roseiflexus castenholzii DSM 13941]
gi|238065017|sp|A7NIW1|NUOB1_ROSCS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|156232636|gb|ABU57419.1| NADH-quinone oxidoreductase, B subunit [Roseiflexus castenholzii
DSM 13941]
Length = 167
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 79/155 (50%), Positives = 111/155 (71%), Gaps = 2/155 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-AP 86
I + G + S++Q+V W+R+ ++ + FGLACCA+EMM A YDL RFG
Sbjct: 2 GIEQKAGDMGIVTASLEQVVNWSRSNAMWPLLFGLACCAIEMMGAQGANYDLSRFGMEIN 61
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+D+MIVAG ++ KMA +RR+YDQM +P++VI+MG CA GG ++ +Y++V+G
Sbjct: 62 RASPRQADLMIVAGRVSRKMAPVVRRLYDQMADPKWVIAMGDCAACGGVFN-NYAIVQGV 120
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
D IVPVD+YV GCPP EALI GI+ L +K+RR+
Sbjct: 121 DEIVPVDVYVAGCPPRPEALIDGIIHLHEKVRRMR 155
>gi|1019632|gb|AAA79257.1| photosystem II protein G [Paramecium aurelia]
Length = 156
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 94/143 (65%), Positives = 121/143 (84%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
FL S + L++WAR GS +TFGLACCA+EMM A++ RYD +RFG RA+PRQ+D++I
Sbjct: 7 FLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQADLII 66
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGT+TNKMA ALRR+YDQ +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PVDI+VP
Sbjct: 67 VAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVP 126
Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
GCPPTAEAL +G+L LQK + +
Sbjct: 127 GCPPTAEALFFGVLQLQKTLMKT 149
>gi|317156952|ref|XP_001826129.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7 [Aspergillus
oryzae RIB40]
Length = 155
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 104/146 (71%), Positives = 121/146 (82%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
+ T+ DQL+ WAR GSL +TF LACC +EMM SMPRYD +R G RASPRQ+DVMIV
Sbjct: 5 VKTTTDQLINWARQGSLWPLTFALACCGIEMMHVSMPRYDQDRLGIIFRASPRQADVMIV 64
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
AGT+TNKMA ALR++YDQMP+P++VISMGSCANGGGYY+YSYSVVRG DR+VPVDIYVPG
Sbjct: 65 AGTVTNKMAPALRQLYDQMPDPKWVISMGSCANGGGYYYYSYSVVRGVDRVVPVDIYVPG 124
Query: 159 CPPTAEALIYGILLLQKKIRRVGNVK 184
CPPT EAL+Y I LQKKIRR +
Sbjct: 125 CPPTPEALMYAIFQLQKKIRRTKVTR 150
>gi|78778022|ref|YP_394337.1| NADH dehydrogenase subunit B [Sulfurimonas denitrificans DSM 1251]
gi|123549715|sp|Q30PH9|NUOB_SULDN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|78498562|gb|ABB45102.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Sulfurimonas
denitrificans DSM 1251]
Length = 169
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 86/147 (58%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+TS+D++V W R+ SL MT+GLACC +EMM + RYD +RFG RASPRQSDVMI
Sbjct: 16 VALTSIDKIVNWGRSNSLWAMTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQSDVMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLT K A ++R+YDQM EP++VISMGSCAN GG ++ +Y+ V+G DRI+PVD+Y+P
Sbjct: 76 VAGTLTKKHAEFIKRLYDQMTEPKWVISMGSCANTGGMFN-TYATVQGVDRIIPVDLYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L YG++LLQKKIR +
Sbjct: 135 GCAPRPETLQYGVMLLQKKIRANKASR 161
>gi|262376776|ref|ZP_06070004.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
lwoffii SH145]
gi|262308486|gb|EEY89621.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
lwoffii SH145]
Length = 226
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 75/161 (46%), Positives = 102/161 (63%), Gaps = 6/161 (3%)
Query: 27 SRISSEITHKGFLVTSVDQLV----TWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+ E +K +T ++ +V W R S+ FG +CC VE +DL RF
Sbjct: 25 DPLLEEEVNKNVFMTRLEDVVHTAVNWGRKNSVWPFNFGTSCCYVEYATTLTGVHDLSRF 84
Query: 83 GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
G RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YS
Sbjct: 85 GAEVIRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYS 143
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VV+G D+I+PVD+Y+PGCPP EALI ++LLQ +I+
Sbjct: 144 VVQGVDKIIPVDVYIPGCPPRPEALIQALMLLQDQIQLERR 184
>gi|218460106|ref|ZP_03500197.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli Kim
5]
Length = 167
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 83/153 (54%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SP
Sbjct: 5 NNAIRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + V
Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD++VPGCPP EAL++G LLLQ+KI+R +
Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 156
>gi|118474832|ref|YP_891363.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp.
fetus 82-40]
gi|238055277|sp|A0RMD0|NUOB_CAMFF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|118414058|gb|ABK82478.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp.
fetus 82-40]
Length = 168
Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats.
Identities = 70/152 (46%), Positives = 100/152 (65%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+ ++T +D L W R SL M FG ACCA+E M A ++DL RFG R S
Sbjct: 4 ENLVQNDVVLTRLDALFNWGRKNSLWPMIFGTACCAIEFMSAVSSKHDLSRFGAEVMRFS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MI+AGT++ K A L+ +YDQM EP++V+SMG+CA GG ++ +Y+ ++G D+I
Sbjct: 64 PRQADLMIIAGTISFKQAPILKEIYDQMCEPKWVVSMGACACSGG-FYDNYTTLQGIDQI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+PVD+Y+ GCPP EA+I IL +Q KI
Sbjct: 123 IPVDVYISGCPPRPEAIIDAILAIQDKISNES 154
>gi|5650745|emb|CAB51630.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
meliloti]
Length = 167
Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats.
Identities = 82/153 (53%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
++ L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SP
Sbjct: 5 NDAIRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + V
Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD++VPGCPP EAL++G LLLQ+KI++ +
Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKKSRAL 156
>gi|300918548|ref|ZP_07135138.1| NADH dehydrogenase subunit B [Escherichia coli MS 115-1]
gi|300414283|gb|EFJ97593.1| NADH dehydrogenase subunit B [Escherichia coli MS 115-1]
Length = 220
Score = 207 bits (528), Expect = 5e-52, Method: Composition-based stats.
Identities = 73/170 (42%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
L++ + + E+ +K + ++ +V W R S+ FGL+CC VEM+ +
Sbjct: 14 NDRYPLQRQEIVTDPLEQEV-NKNVFMGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72
Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
+D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN
Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 181
>gi|320160240|ref|YP_004173464.1| NADH-quinone oxidoreductase subunit B [Anaerolinea thermophila
UNI-1]
gi|319994093|dbj|BAJ62864.1| NADH-quinone oxidoreductase chain B [Anaerolinea thermophila UNI-1]
Length = 160
Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 112/158 (70%), Gaps = 2/158 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
+ ++ + G + +++ V WART ++ M FGLACCA+EMM A YD+ RFG
Sbjct: 2 GVEQKLGNMGVVTLKLEEAVNWARTNAMWPMLFGLACCAIEMMAAQASNYDMSRFGMELM 61
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQSD+MIVAG ++ KMA LR++YDQMP P++VI+MG CA+ GG ++ +Y++++G
Sbjct: 62 RASPRQSDLMIVAGRVSRKMAPVLRQLYDQMPYPKWVIAMGDCASCGGVFN-NYAILQGV 120
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D IVPVD+YV GCPP E LI+G+L L K+R+ VK
Sbjct: 121 DEIVPVDVYVAGCPPRPEGLIHGVLTLHDKVRKEKLVK 158
>gi|16263286|ref|NP_436079.1| NuoB2 NADH I chain B [Sinorhizobium meliloti 1021]
gi|307304395|ref|ZP_07584146.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
BL225C]
gi|307318102|ref|ZP_07597538.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
AK83]
gi|17380450|sp|P56897|NUOB2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|14523963|gb|AAK65491.1| NuoB2 NADH:quinone oxidoreductase (chain B) [Sinorhizobium meliloti
1021]
gi|306896143|gb|EFN26893.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
AK83]
gi|306902597|gb|EFN33191.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium meliloti
BL225C]
Length = 167
Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats.
Identities = 82/153 (53%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
++ L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SP
Sbjct: 5 NDAIRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + V
Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD++VPGCPP EAL++G LLLQ+KI++ +
Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKKSRAL 156
>gi|94970385|ref|YP_592433.1| NADH-quinone oxidoreductase, B subunit [Candidatus Koribacter
versatilis Ellin345]
gi|238065024|sp|Q1IL91|NUOB2_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|94552435|gb|ABF42359.1| NADH dehydrogenase subunit B [Candidatus Koribacter versatilis
Ellin345]
Length = 202
Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats.
Identities = 83/146 (56%), Positives = 111/146 (76%), Gaps = 2/146 (1%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQS 93
K FL++SVD + WAR S+ MTFGLACCA+EM+ AS RYD+ RFG R SPRQS
Sbjct: 9 EKNFLLSSVDYVFNWARKSSVWPMTFGLACCAIEMITASTARYDIARFGSEVFRPSPRQS 68
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
D+MIVAGT+T KMA ++R+Y+QMPEP++V++MG+CA+ GG ++ +Y+ ++G D+IVPVD
Sbjct: 69 DLMIVAGTVTLKMAPVVQRIYEQMPEPKWVMAMGACASVGGPFN-TYATLQGVDKIVPVD 127
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRR 179
+YV GCPP E L YG+L LQ KI
Sbjct: 128 VYVVGCPPRPENLFYGLLKLQDKIDH 153
>gi|331699311|ref|YP_004335550.1| NAD(P)H-quinone oxidoreductase subunit K [Pseudonocardia
dioxanivorans CB1190]
gi|326954000|gb|AEA27697.1| NAD(P)H-quinone oxidoreductase subunit K [Pseudonocardia
dioxanivorans CB1190]
Length = 183
Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats.
Identities = 84/151 (55%), Positives = 109/151 (72%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+T+V++LV W R SL TFGLACCA+EMM PRYDL RFG RAS
Sbjct: 4 EEKLPSGVLLTNVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++NKMA LR++YDQMPEPR+V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E LI IL + KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKIMDE 153
>gi|239943528|ref|ZP_04695465.1| putative NADH dehydrogenase chain B [Streptomyces roseosporus NRRL
15998]
gi|239989982|ref|ZP_04710646.1| putative NADH dehydrogenase chain B [Streptomyces roseosporus NRRL
11379]
Length = 226
Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats.
Identities = 85/186 (45%), Positives = 113/186 (60%), Gaps = 2/186 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL-VTSVDQLVTWARTGSLMWMT 59
MGLT+ + D + L + ++ W R SL
Sbjct: 1 MGLTSRPTPASQQPAPPLPPAADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFN 60
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
FGLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+KMA A++R+Y+QMP
Sbjct: 61 FGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMP 120
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
EP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI
Sbjct: 121 EPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIA 180
Query: 179 RVGNVK 184
R +
Sbjct: 181 RESLAE 186
>gi|254456709|ref|ZP_05070137.1| NADH dehydrogenase i chain b [Campylobacterales bacterium GD 1]
gi|207085501|gb|EDZ62785.1| NADH dehydrogenase i chain b [Campylobacterales bacterium GD 1]
Length = 169
Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats.
Identities = 85/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+TS+D++V W R+ SL +T+GLACC +EMM + RYD +RFG RASPRQ+DVMI
Sbjct: 16 VALTSIDKIVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQADVMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLT K A ++R+YDQM EPR+VISMGSCAN GG ++ +Y+ V+G DRI+PVD+Y+P
Sbjct: 76 VAGTLTKKHAEFIKRLYDQMTEPRWVISMGSCANTGGMFN-TYATVQGVDRIIPVDLYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E L YG++LLQ+KIR K
Sbjct: 135 GCAPRPETLQYGVMLLQQKIRANHASK 161
>gi|260076121|gb|ACX30998.1| NADH dehydrogenase subunit 10 [Moneuplotes crassus]
Length = 163
Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats.
Identities = 96/140 (68%), Positives = 121/140 (86%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+LVT + ++ W+R GS+ +TFGLACCAVEMM ++M RYDL+RFG RASPR SD++I
Sbjct: 5 WLVTKLQIMINWSRAGSIWPLTFGLACCAVEMMHSAMSRYDLDRFGTIFRASPRHSDLII 64
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTLTNKMA LRR+++QM EP++++SMGSCANGGGYYHYSY+VVRG DRIVPVD+YVP
Sbjct: 65 IAGTLTNKMAPTLRRLFEQMQEPKFILSMGSCANGGGYYHYSYAVVRGADRIVPVDMYVP 124
Query: 158 GCPPTAEALIYGILLLQKKI 177
GCPPTAEALI+G+L LQ K+
Sbjct: 125 GCPPTAEALIFGLLQLQGKV 144
>gi|87311558|ref|ZP_01093676.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Blastopirellula
marina DSM 3645]
gi|87285680|gb|EAQ77596.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Blastopirellula
marina DSM 3645]
Length = 198
Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats.
Identities = 83/152 (54%), Positives = 113/152 (74%), Gaps = 2/152 (1%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQS 93
+ + T+++Q + WA+ S+ MTFGLACCA+EMM A RYDL+RFG A RA+PRQ+
Sbjct: 11 EENVVFTTLEQAINWAQQSSIWPMTFGLACCAIEMMAAGASRYDLDRFGAGAFRATPRQA 70
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-YHYSYSVVRGCDRIVPV 152
D+MIVAGT+T KMAS +RR+Y+ MP+P+YVI+MG+C GGG + Y Y VV+G D +VPV
Sbjct: 71 DLMIVAGTVTYKMASRVRRLYNMMPDPKYVIAMGACTVGGGPYFKYGYHVVKGVDLVVPV 130
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+YVPGCPP EAL+ G++ +Q KI+ K
Sbjct: 131 DVYVPGCPPRPEALLEGLMRIQDKIKGKRINK 162
>gi|296122635|ref|YP_003630413.1| NADH-quinone oxidoreductase, subunit beta [Planctomyces limnophilus
DSM 3776]
gi|296014975|gb|ADG68214.1| NADH-quinone oxidoreductase, B subunit [Planctomyces limnophilus
DSM 3776]
Length = 225
Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats.
Identities = 83/172 (48%), Positives = 118/172 (68%), Gaps = 10/172 (5%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ S ++ F + +VT+++Q + W + S+ +TFG+ACCA+EMM
Sbjct: 18 NPLPSAGSPWIEGRF--------EENLIVTTLEQAMNWGQLSSVWPLTFGIACCAMEMMA 69
Query: 72 ASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
M +YDL+RFG A RA+PRQ+D+MIVAGT+T KMAS +RR+YDQMP+P+YVI+MG+C
Sbjct: 70 TGMSKYDLDRFGSGAFRATPRQADLMIVAGTVTYKMASRIRRLYDQMPDPKYVIAMGACT 129
Query: 131 NGGGY-YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
GGG + Y Y VV+G D +VPVD+Y+PGCPP EAL+ G++ +Q KIR
Sbjct: 130 IGGGPYFKYGYHVVKGVDLVVPVDVYIPGCPPRPEALLEGVMRIQDKIRARK 181
>gi|262369334|ref|ZP_06062662.1| NADH dehydrogenase subunit I B [Acinetobacter johnsonii SH046]
gi|262315402|gb|EEY96441.1| NADH dehydrogenase subunit I B [Acinetobacter johnsonii SH046]
Length = 225
Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats.
Identities = 75/157 (47%), Positives = 101/157 (64%), Gaps = 6/157 (3%)
Query: 31 SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
E +K +T ++ + V W R S+ FG +CC VE +DL RFG
Sbjct: 28 EEEVNKNVFMTRLEDVAHTAVNWGRKNSVWPFNFGTSCCYVEYATTLTGVHDLSRFGAEV 87
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G
Sbjct: 88 IRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQG 146
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+I+PVD+Y+PGCPP EALI ++LLQ +I+
Sbjct: 147 VDKIIPVDVYIPGCPPRPEALIQALMLLQDQIQLERR 183
>gi|16761252|ref|NP_456869.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16765654|ref|NP_461269.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29141052|ref|NP_804394.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56412776|ref|YP_149851.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62180897|ref|YP_217314.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161502528|ref|YP_001569640.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|161612945|ref|YP_001586910.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167549674|ref|ZP_02343433.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167994675|ref|ZP_02575766.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168229696|ref|ZP_02654754.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168237344|ref|ZP_02662402.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168242445|ref|ZP_02667377.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168261657|ref|ZP_02683630.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168465970|ref|ZP_02699840.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168817943|ref|ZP_02829943.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194443155|ref|YP_002041587.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194449154|ref|YP_002046380.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194472303|ref|ZP_03078287.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194736744|ref|YP_002115396.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197249243|ref|YP_002147285.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197261696|ref|ZP_03161770.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197361710|ref|YP_002141346.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198241862|ref|YP_002216397.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200386648|ref|ZP_03213260.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204928974|ref|ZP_03220117.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205353442|ref|YP_002227243.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207857745|ref|YP_002244396.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213052942|ref|ZP_03345820.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213420337|ref|ZP_03353403.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213427012|ref|ZP_03359762.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213581020|ref|ZP_03362846.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213610191|ref|ZP_03370017.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213647303|ref|ZP_03377356.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|224583187|ref|YP_002636985.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|238912394|ref|ZP_04656231.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|289827447|ref|ZP_06546059.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|75482044|sp|Q57M29|NUOB_SALCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81416296|sp|Q7CQ50|NUOB_SALTY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81599848|sp|Q5PN54|NUOB_SALPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81628072|sp|Q8XGN7|NUOB_SALTI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065204|sp|B5EZK8|NUOB_SALA4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065205|sp|A9MJ98|NUOB_SALAR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065206|sp|B5FPG8|NUOB_SALDC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065207|sp|B5R308|NUOB_SALEP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065208|sp|B5RCF2|NUOB_SALG2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065209|sp|B4TBJ3|NUOB_SALHS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065210|sp|B4SYZ8|NUOB_SALNS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065211|sp|A9N581|NUOB_SALPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065212|sp|B5BCL9|NUOB_SALPK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065213|sp|B4TPK9|NUOB_SALSV RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|254767798|sp|C0Q040|NUOB_SALPC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|25299003|pir||AE0797 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16420868|gb|AAL21228.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16503551|emb|CAD07559.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136678|gb|AAO68243.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56127033|gb|AAV76539.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62128530|gb|AAX66233.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|160863875|gb|ABX20498.1| hypothetical protein SARI_00572 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161362309|gb|ABX66077.1| hypothetical protein SPAB_00651 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401818|gb|ACF62040.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194407458|gb|ACF67677.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194458667|gb|EDX47506.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194712246|gb|ACF91467.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195631416|gb|EDX49976.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197093186|emb|CAR58630.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197212946|gb|ACH50343.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197239951|gb|EDY22571.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197289718|gb|EDY29081.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197936378|gb|ACH73711.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199603746|gb|EDZ02291.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204321518|gb|EDZ06717.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205273223|emb|CAR38186.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205325363|gb|EDZ13202.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205327503|gb|EDZ14267.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205335598|gb|EDZ22362.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205338322|gb|EDZ25086.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205345026|gb|EDZ31790.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205349478|gb|EDZ36109.1| NADH-quinone oxidoreductase, B subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206709548|emb|CAR33893.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467714|gb|ACN45544.1| NADH dehydrogenase beta subunit [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261247533|emb|CBG25360.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994422|gb|ACY89307.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301158885|emb|CBW18398.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913318|dbj|BAJ37292.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320086761|emb|CBY96533.1| NADH dehydrogenase I chain B [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|321222972|gb|EFX48043.1| NADH-ubiquinone oxidoreductase chain B [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322617073|gb|EFY13979.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322617621|gb|EFY14520.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322624749|gb|EFY21578.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322630298|gb|EFY27068.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322634479|gb|EFY31212.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322639189|gb|EFY35881.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322640052|gb|EFY36719.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322645727|gb|EFY42251.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322651503|gb|EFY47878.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322656062|gb|EFY52361.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659415|gb|EFY55662.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322665875|gb|EFY62058.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322669885|gb|EFY66026.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322673871|gb|EFY69968.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322678629|gb|EFY74685.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322683575|gb|EFY79589.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322687651|gb|EFY83621.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322715376|gb|EFZ06947.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323130658|gb|ADX18088.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323193515|gb|EFZ78720.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323198420|gb|EFZ83522.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201934|gb|EFZ86996.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323208528|gb|EFZ93467.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323209763|gb|EFZ94687.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323218299|gb|EGA03009.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323222944|gb|EGA07293.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323227379|gb|EGA11544.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323232294|gb|EGA16397.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235672|gb|EGA19756.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323241167|gb|EGA25203.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323244909|gb|EGA28911.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323250028|gb|EGA33922.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254449|gb|EGA38264.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323254951|gb|EGA38742.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323260331|gb|EGA43950.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323268093|gb|EGA51570.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270814|gb|EGA54252.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326624148|gb|EGE30493.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|326628534|gb|EGE34877.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332989260|gb|AEF08243.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 220
Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats.
Identities = 74/170 (43%), Positives = 107/170 (62%), Gaps = 3/170 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
L+K + + E+ +K + + +V W R S+ FGL+CC VEM+ +
Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72
Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
+D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN
Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 181
>gi|71065152|ref|YP_263879.1| NADH dehydrogenase subunit B [Psychrobacter arcticus 273-4]
gi|123649364|sp|Q4FU63|NUOB_PSYA2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|71038137|gb|AAZ18445.1| NADH dehydrogenase I, B subunit [Psychrobacter arcticus 273-4]
Length = 222
Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats.
Identities = 78/177 (44%), Positives = 105/177 (59%), Gaps = 6/177 (3%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWMTFGLACCA 66
+ + + + + +K + ++ LV W R SL FG +CC
Sbjct: 8 ANPDADVYPAQTSQTVNDPMEDEVNKNVFMGRLEDLVHSTANWGRKHSLWPFNFGTSCCY 67
Query: 67 VEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
VE +DL RFG RASPRQ+DVMIVAGT KMA ++R+Y+QM EP++VIS
Sbjct: 68 VEYATTLTAVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVIQRLYEQMLEPKWVIS 127
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
MG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI G++LLQ+ I +
Sbjct: 128 MGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQGLMLLQESITKERR 183
>gi|93005404|ref|YP_579841.1| NADH dehydrogenase subunit B [Psychrobacter cryohalolentis K5]
gi|122415842|sp|Q1QD96|NUOB_PSYCK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|92393082|gb|ABE74357.1| NADH-quinone oxidoreductase, B subunit [Psychrobacter
cryohalolentis K5]
Length = 222
Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats.
Identities = 78/177 (44%), Positives = 105/177 (59%), Gaps = 6/177 (3%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWMTFGLACCA 66
+ + + + + +K + ++ LV W R SL FG +CC
Sbjct: 8 ANPDADVYPAQTSQTVNDPMEDEVNKNVFMGRLEDLVHSTANWGRKHSLWPFNFGTSCCY 67
Query: 67 VEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
VE +DL RFG RASPRQ+DVMIVAGT KMA ++R+Y+QM EP++VIS
Sbjct: 68 VEYATTLTAVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVIQRLYEQMLEPKWVIS 127
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
MG+CAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI G++LLQ+ I +
Sbjct: 128 MGACANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQGLMLLQESITKERR 183
>gi|50083950|ref|YP_045460.1| NADH dehydrogenase subunit B [Acinetobacter sp. ADP1]
gi|81393679|sp|Q6FE70|NUOB_ACIAD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|49529926|emb|CAG67638.1| NADH dehydrogenase I chain B [Acinetobacter sp. ADP1]
Length = 225
Score = 207 bits (526), Expect = 8e-52, Method: Composition-based stats.
Identities = 76/157 (48%), Positives = 101/157 (64%), Gaps = 6/157 (3%)
Query: 31 SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
E +K +T ++ + V W R S+ FG +CC VE +DL RFG
Sbjct: 28 QEEVNKNVFMTRLEDVLHNVVNWGRKNSVWPFNFGTSCCYVEYATTLTGVHDLSRFGAEV 87
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G
Sbjct: 88 IRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQG 146
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+I+PVD+YVPGCPP EALI ++LLQ +I+
Sbjct: 147 VDKIIPVDVYVPGCPPRPEALIQALMLLQDQIQLERR 183
>gi|260076082|gb|ACX30960.1| NADH dehydrogenase subunit 10 [Euplotes minuta]
Length = 167
Score = 207 bits (526), Expect = 8e-52, Method: Composition-based stats.
Identities = 96/140 (68%), Positives = 122/140 (87%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+LVT + +V W+R+GS+ +TFGLACCAVEMM ++M RYDL+RFG RASPR SD++I
Sbjct: 9 WLVTKLQTMVNWSRSGSIWPLTFGLACCAVEMMHSAMSRYDLDRFGMIFRASPRHSDLII 68
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTLTNKMA LRR+++QM EP++++SMGSCANGGGYYHYSY+VVRG +RIVPVD+YVP
Sbjct: 69 IAGTLTNKMAPTLRRLFEQMQEPKFILSMGSCANGGGYYHYSYAVVRGAERIVPVDMYVP 128
Query: 158 GCPPTAEALIYGILLLQKKI 177
GCPPTAEALI+G+L LQ K+
Sbjct: 129 GCPPTAEALIFGLLQLQGKV 148
>gi|148653495|ref|YP_001280588.1| NADH dehydrogenase subunit B [Psychrobacter sp. PRwf-1]
gi|238065199|sp|A5WG47|NUOB_PSYWF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|148572579|gb|ABQ94638.1| NADH-quinone oxidoreductase, B subunit [Psychrobacter sp. PRwf-1]
Length = 222
Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats.
Identities = 78/177 (44%), Positives = 106/177 (59%), Gaps = 10/177 (5%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV----TWARTGSLMWMTFGLACCA 66
+ + + V+ + ++ + ++ +V W R SL FG +CC
Sbjct: 12 ADTYPAQTRQTVNNPI----EDEVNRNVFMGKLEDMVHASANWGRKNSLWPFNFGTSCCY 67
Query: 67 VEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
VE +DL RFG RASPRQ+DVMIVAGT KMA ++R+Y+QM EP++VIS
Sbjct: 68 VEYATTLTAVHDLSRFGAEVIRASPRQADVMIVAGTCFVKMAPVIQRLYEQMLEPKWVIS 127
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
MGSCAN GG Y YSVV+G D+I+PVD+YVPGCPP EALI G++LLQ+ I +
Sbjct: 128 MGSCANSGGMY-DIYSVVQGVDKIIPVDVYVPGCPPRPEALIQGLMLLQESITKERR 183
>gi|237732318|ref|ZP_04562799.1| trifunctional NADH dehydrogenase I subunit B/C/D [Citrobacter sp.
30_2]
gi|283832283|ref|ZP_06352024.1| NADH dehydrogenase I subunit B [Citrobacter youngae ATCC 29220]
gi|226907857|gb|EEH93775.1| trifunctional NADH dehydrogenase I subunit B/C/D [Citrobacter sp.
30_2]
gi|291071927|gb|EFE10036.1| NADH dehydrogenase I subunit B [Citrobacter youngae ATCC 29220]
Length = 220
Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats.
Identities = 74/170 (43%), Positives = 106/170 (62%), Gaps = 3/170 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
L+K + + E+ +K + + +V W R S+ FGL+CC VEM+ +
Sbjct: 14 NDRYPLQKQEIVTDPLEQEV-NKNVFMGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSF 72
Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
+D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN
Sbjct: 73 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 132
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I +
Sbjct: 133 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSIGKERR 181
>gi|10640284|emb|CAC12098.1| probable NADH dehydrogenase, chain B [Thermoplasma acidophilum]
Length = 149
Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats.
Identities = 85/145 (58%), Positives = 106/145 (73%), Gaps = 1/145 (0%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDV 95
G + T++DQ + WAR+ SL +TFGLACCA+EMM D+ RFG R SPRQSD+
Sbjct: 2 GVVTTTLDQALEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFRNSPRQSDL 61
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIV+GT+T KMA +RR+YD+MP P+YVI+ G C GG Y+ YSVV G DR+VPVD+Y
Sbjct: 62 MIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVDRVVPVDVY 121
Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
+PGCPPT EAL GI+LLQKKIR
Sbjct: 122 IPGCPPTPEALTNGIILLQKKIRGE 146
>gi|15789834|ref|NP_279658.1| NADH dehydrogenase/oxidoreductase [Halobacterium sp. NRC-1]
gi|169235555|ref|YP_001688755.1| NADH dehydrogenase-like complex subunit B [Halobacterium salinarum
R1]
gi|10580226|gb|AAG19138.1| NADH dehydrogenase/oxidoreductase [Halobacterium sp. NRC-1]
gi|167726621|emb|CAP13406.1| NADH dehydrogenase-like complex subunit B [Halobacterium salinarum
R1]
Length = 235
Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 119/180 (66%), Gaps = 2/180 (1%)
Query: 2 GLTTVNQKIISGQSSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
+T + + S + + + VD F+ R+ F++T D+ + W R S+ + F
Sbjct: 9 SITDTSDPLTSTRDARMGDGVDDRFNSRLREAFGSTPFILTKFDKFMNWVRGSSMFMLQF 68
Query: 61 GLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
G+ACC++EMM ++DL+RF PRASPRQ+DVMIV GT+ +K A ++RVYDQMPE
Sbjct: 69 GIACCSIEMMHTYSVKHDLDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQMPE 128
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++V++MG+C+ GG + Y+VV+G + ++PVDI++PGCPP EAL+YG+ LQ++I
Sbjct: 129 PKFVVNMGNCSTSGGPFQEGYNVVKGAEEVIPVDIHIPGCPPRPEALVYGVAKLQERIAN 188
>gi|76801790|ref|YP_326798.1| NADH dehydrogenase-like complex, subunit B [Natronomonas pharaonis
DSM 2160]
gi|76557655|emb|CAI49238.1| NADH dehydrogenase-like complex, subunit B [Natronomonas pharaonis
DSM 2160]
Length = 227
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 78/174 (44%), Positives = 115/174 (66%), Gaps = 2/174 (1%)
Query: 11 ISGQSSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
S Q + + VD F+ ++ F++T D+ + W R S+ + FG+ACC++EM
Sbjct: 10 TSTQQARMGDGVDDRFNSKLREAFGSTPFILTKFDKFMNWVRGNSMFMLQFGIACCSIEM 69
Query: 70 MQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
+ ++DL+RFG PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP++V+ MGS
Sbjct: 70 IHTYAIKHDLDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVGMGS 129
Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
C GG + Y+V++G + ++PVDI+VPGCPP EALIYGI LQ++IR
Sbjct: 130 CTISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGIAKLQERIRNGET 183
>gi|301353373|ref|YP_003795584.1| NADH-plastoquinone oxidoreductase subunit K [Pteridium aquilinum
subsp. aquilinum]
gi|301016291|gb|ADK47578.1| NADH-plastoquinone oxidoreductase subunit K [Pteridium aquilinum
subsp. aquilinum]
Length = 252
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 66/172 (38%), Positives = 104/172 (60%), Gaps = 3/172 (1%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
+ + + +++ + + ++ W+R SL + +G +CC +E
Sbjct: 16 VEPRGGGVI--LNSVEPLLPEWGVSNSIFLANISDFSNWSRLSSLWPLLYGTSCCFIEFA 73
Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C
Sbjct: 74 SLIGSRFDFDRYGLVPRSSPRQADLIVTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACT 133
Query: 131 NGGGY-YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
GG SYS VRG D+++PVDI++PGCPP EA+I + L+KKI R
Sbjct: 134 ITGGMSSTDSYSTVRGVDKLIPVDIHLPGCPPKPEAIIDAVTKLRKKIARES 185
>gi|220908787|ref|YP_002484098.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7425]
gi|238065000|sp|B8HQR6|NDHK1_CYAP4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 1; AltName:
Full=NAD(P)H dehydrogenase I subunit K 1; AltName:
Full=NDH-1 subunit K 1; Short=NDH-K 1
gi|219865398|gb|ACL45737.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7425]
Length = 238
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 70/155 (45%), Positives = 103/155 (66%), Gaps = 2/155 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+ E+ ++TS++ + +W R SL + +G ACC +E R+D +RFG P
Sbjct: 18 PEVPQELQE-NIILTSLNDVYSWCRLSSLWPLMYGTACCFIEFAAMIGSRFDFDRFGLVP 76
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRG 145
R SPRQ+D++I AGT+T KMA AL ++Y+QMPEP+YVI+MG+C GG + S + VRG
Sbjct: 77 RCSPRQADLLITAGTITMKMAPALVKLYEQMPEPKYVIAMGACTITGGMFSTDSPTAVRG 136
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+++PVDIY+PGCPP EA++ I+ L+KKI
Sbjct: 137 VDKLIPVDIYLPGCPPRPEAIMDAIVKLRKKIGNE 171
>gi|332971177|gb|EGK10141.1| NADH-quinone oxidoreductase subunit B [Psychrobacter sp.
1501(2011)]
Length = 222
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 78/157 (49%), Positives = 101/157 (64%), Gaps = 6/157 (3%)
Query: 31 SEITHKGFLVTSVDQLV----TWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
E ++ + ++ +V W R SL FG +CC VE +DL RFG
Sbjct: 28 EEEVNRNVFMGKLEDMVHASANWGRKHSLWPFNFGTSCCYVEYATTLTAVHDLSRFGAEV 87
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RASPRQ+DVMIVAGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G
Sbjct: 88 IRASPRQADVMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGSCANSGGMY-DIYSVVQG 146
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+I+PVD+YVPGCPP EALI G++LLQ+ I +
Sbjct: 147 VDKIIPVDVYVPGCPPRPEALIQGLMLLQESITKERR 183
>gi|154795228|ref|NP_848064.3| NADH dehydrogenase subunit K [Adiantum capillus-veneris]
Length = 223
Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats.
Identities = 68/149 (45%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
+ S+ W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D+
Sbjct: 12 DSIFMASISDFSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADL 71
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDI 154
++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVDI
Sbjct: 72 IVTAGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDI 131
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
Y+PGCPP EA++ + L+KKI R V
Sbjct: 132 YLPGCPPKPEAIMDAVTKLRKKIARNRFV 160
>gi|21672438|ref|NP_660505.1| NADH dehydrogenase subunit B [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008859|sp|Q8K9Y6|NUOB_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|21623050|gb|AAM67716.1| NADH dehydrogenase I chain B [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 223
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 79/181 (43%), Positives = 107/181 (59%), Gaps = 2/181 (1%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
LT +K + + + + G + + ++V W R SL FGL
Sbjct: 5 LTRAERKSQRHYPNETTQSTIDPIEGYLKKNILMGKVTKLLHKIVNWGRKNSLWPYNFGL 64
Query: 63 ACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
+CC VEM+ A +D+ RFG RASPRQ+DVM++AGT KMA ++R+YDQM EP+
Sbjct: 65 SCCYVEMVTAFTSVHDVARFGSEVLRASPRQADVMVIAGTPFIKMAPVIQRLYDQMLEPK 124
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+VISMG+CAN GG Y YSVV+G D+ +PVDIY+PGCPP EA I+ + LLQK I
Sbjct: 125 WVISMGACANSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYIHALTLLQKTINEER 183
Query: 182 N 182
Sbjct: 184 R 184
>gi|290998039|ref|XP_002681588.1| predicted protein [Naegleria gruberi]
gi|284095213|gb|EFC48844.1| predicted protein [Naegleria gruberi]
Length = 174
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 99/147 (67%), Positives = 114/147 (77%), Gaps = 3/147 (2%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
+ FL + L WART SL ++FGLACCAVEMM S RYD+ER G R +PRQ
Sbjct: 1 MAKAEFLKAPIHDLYAWARTSSLWPVSFGLACCAVEMMHTSASRYDIERMGIFYRPTPRQ 60
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
SD MI+AGTLTNKMA ALR+V+DQM EP+Y ISMGSCANGGGYYHYSY VVRG D+IVPV
Sbjct: 61 SDAMIIAGTLTNKMAPALRKVWDQMSEPKYSISMGSCANGGGYYHYSYHVVRGADQIVPV 120
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
D+YVPGCPPT L+YGI +LQKKI+R
Sbjct: 121 DVYVPGCPPT---LLYGIYMLQKKIKR 144
>gi|226953551|ref|ZP_03824015.1| NADH dehydrogenase I subunit B [Acinetobacter sp. ATCC 27244]
gi|294649461|ref|ZP_06726885.1| NADH-quinone oxidoreductase subunit B [Acinetobacter haemolyticus
ATCC 19194]
gi|226835729|gb|EEH68112.1| NADH dehydrogenase I subunit B [Acinetobacter sp. ATCC 27244]
gi|292824631|gb|EFF83410.1| NADH-quinone oxidoreductase subunit B [Acinetobacter haemolyticus
ATCC 19194]
Length = 225
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 76/157 (48%), Positives = 102/157 (64%), Gaps = 6/157 (3%)
Query: 31 SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
E +K ++T ++ + V W R SL FG +CC VE +DL RFG
Sbjct: 28 EEEVNKSVMMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEV 87
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G
Sbjct: 88 IRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQG 146
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+I+PVD+Y+PGCPP EALI ++LLQ +I+
Sbjct: 147 VDKIIPVDVYIPGCPPRPEALIQALMLLQDQIQLERR 183
>gi|261346156|ref|ZP_05973800.1| NADH dehydrogenase I subunit B [Providencia rustigianii DSM 4541]
gi|282565809|gb|EFB71344.1| NADH dehydrogenase I subunit B [Providencia rustigianii DSM 4541]
Length = 224
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 77/169 (45%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+ E V + + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQTQEIVTDPLEQQVENSVYMGKLSHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMGSCAN G
Sbjct: 78 SVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|38505806|ref|NP_942425.1| NADH dehydrogenase subunit B [Synechocystis sp. PCC 6803]
gi|131407|sp|P17062|NDHK2_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName:
Full=NAD(P)H dehydrogenase I subunit K 2; AltName:
Full=NDH-1 subunit K 2; Short=NDH-K 2
gi|48068|emb|CAA35236.1| unnamed protein product [Synechocystis sp. PCC 6803]
gi|38423830|dbj|BAD02039.1| NADH dehydrogenase subunit [Synechocystis sp. PCC 6803]
Length = 219
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 75/157 (47%), Positives = 109/157 (69%), Gaps = 2/157 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
+++ E++ ++T +D + WAR +L M FG ACC +E M A PR+DLERFG P
Sbjct: 17 PQVTKELSE-NVILTCLDDIYNWARLSTLYPMMFGTACCFMEFMAAFGPRFDLERFGSIP 75
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRG 145
RA+PRQ+D+MI AGT+T K A AL ++Y+Q+PEP+YVI+MG+C G + S + VRG
Sbjct: 76 RATPRQADLMITAGTITMKYAPALVQLYEQIPEPKYVIAMGACTITAGMFSADSPTAVRG 135
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+++PVD+Y+PGCPP EA+I GI+ L+KK+
Sbjct: 136 VDKLIPVDVYIPGCPPRPEAVIDGIIKLRKKVAGESR 172
>gi|262373374|ref|ZP_06066653.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
junii SH205]
gi|262313399|gb|EEY94484.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
junii SH205]
Length = 225
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 76/157 (48%), Positives = 102/157 (64%), Gaps = 6/157 (3%)
Query: 31 SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
E +K ++T ++ + V W R SL FG +CC VE +DL RFG
Sbjct: 28 EEEVNKSVMMTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEV 87
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G
Sbjct: 88 IRASPRQADLMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQG 146
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+I+PVD+Y+PGCPP EALI ++LLQ +I+
Sbjct: 147 VDKIIPVDVYIPGCPPRPEALIQALMLLQDQIQLERR 183
>gi|227822752|ref|YP_002826724.1| NADH dehydrogenase subunit B [Sinorhizobium fredii NGR234]
gi|227341753|gb|ACP25971.1| NADH dehydrogenase I chain B1 [Sinorhizobium fredii NGR234]
Length = 167
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 82/153 (53%), Positives = 111/153 (72%), Gaps = 1/153 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SP
Sbjct: 5 GNAIRDSVLFTTADSVISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G V
Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGAQTFV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD++VPGCPP EAL++G LLLQ+KI++ +
Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKKDRAL 156
>gi|313901777|ref|ZP_07835202.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter
subterraneus DSM 13965]
gi|313467955|gb|EFR63444.1| NADH-quinone oxidoreductase, B subunit [Thermaerobacter
subterraneus DSM 13965]
Length = 236
Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats.
Identities = 79/170 (46%), Positives = 112/170 (65%), Gaps = 6/170 (3%)
Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
++ + ++ + + G + + +LV W R SL ++ FGLACCA+EM
Sbjct: 66 VVRRLDAHPSMRIPGVWQWLP------GIVTARLQELVNWGRANSLWYLLFGLACCAIEM 119
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
M A R DL+R G RASPRQ+D+MIV+GT+T KMA ++ +YDQM EP++VISMG+C
Sbjct: 120 MAAGATRTDLDRIGSVFRASPRQADLMIVSGTVTEKMAPVVKTLYDQMAEPKFVISMGAC 179
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
A GG Y+ Y+VV G D+I+PVD+YV GCPP EAL++ IL LQ K+R+
Sbjct: 180 ATNGGPYYQGYNVVDGVDKIIPVDVYVAGCPPRPEALVHAILKLQDKVRK 229
>gi|289582900|ref|YP_003481366.1| NADH-quinone oxidoreductase subunit beta [Natrialba magadii ATCC
43099]
gi|289532453|gb|ADD06804.1| NADH-quinone oxidoreductase, B subunit [Natrialba magadii ATCC
43099]
Length = 235
Score = 206 bits (523), Expect = 1e-51, Method: Composition-based stats.
Identities = 77/175 (44%), Positives = 114/175 (65%), Gaps = 2/175 (1%)
Query: 7 NQKIISGQSSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACC 65
+ + E VD F+ ++ F++T D+ + W R S+ + FG+ACC
Sbjct: 14 TAPSTDTRDARIGEGVDDRFNSKLREAFGASPFILTKFDEFMNWVRGNSMFMLQFGIACC 73
Query: 66 AVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
++EMM ++DL+RFG PRASPRQ+DVMIV GT+ +K ++RVYDQMPEP++V+
Sbjct: 74 SIEMMHTYAIKHDLDRFGAGVPRASPRQADVMIVPGTIVSKFGPRMKRVYDQMPEPKFVV 133
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
MGSC GG + Y+VV+G + I+P+DI+VPGCPP EAL+YG+L LQ++I+
Sbjct: 134 GMGSCTISGGPFQEGYNVVKGAEEIIPIDIHVPGCPPRPEALLYGVLKLQERIKN 188
>gi|325003723|ref|ZP_08124835.1| NADH dehydrogenase subunit B [Pseudonocardia sp. P1]
Length = 235
Score = 206 bits (523), Expect = 1e-51, Method: Composition-based stats.
Identities = 84/151 (55%), Positives = 109/151 (72%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+T+V++LV W R SL TFGLACCA+EMM PRYDL RFG RAS
Sbjct: 4 EENLPSGVLLTNVEKLVNWTRKSSLWPATFGLACCAIEMMTTGAPRYDLARFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++NKMA LR++YDQMPEPR+V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSNKMAPVLRQIYDQMPEPRWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E LI IL + KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKIHAKIMDE 153
>gi|13541946|ref|NP_111634.1| NADH dehydrogenase subunit B [Thermoplasma volcanium GSS1]
Length = 157
Score = 206 bits (523), Expect = 1e-51, Method: Composition-based stats.
Identities = 85/153 (55%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPR 87
+ + G + T+V+Q WAR+ SL +TFGLACCA+EMM D+ RFG R
Sbjct: 2 VEIKTGDVGIVTTTVEQAYEWARSNSLWPLTFGLACCAIEMMAIQASDMDISRFGSEIFR 61
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
SPRQSD+MIV+GT+T KMA +RR+YD+MP P+YVI+ G C GG Y+ YSVV G D
Sbjct: 62 NSPRQSDLMIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQGVCVIQGGPYNQGYSVVLGVD 121
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
++VPVD+YVPGCPPT EAL GI+LLQKKIR
Sbjct: 122 KVVPVDVYVPGCPPTPEALTNGIILLQKKIRGE 154
>gi|212712277|ref|ZP_03320405.1| hypothetical protein PROVALCAL_03363 [Providencia alcalifaciens DSM
30120]
gi|212685023|gb|EEB44551.1| hypothetical protein PROVALCAL_03363 [Providencia alcalifaciens DSM
30120]
Length = 224
Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 77/169 (45%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+ E V + + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQTQEIVTDPLEQQVENSVYMGKLSHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMGSCAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|222824437|ref|YP_002576011.1| NADH-quinone oxidoreductase, B subunit [Campylobacter lari RM2100]
gi|222539658|gb|ACM64759.1| NADH-quinone oxidoreductase, B subunit [Campylobacter lari RM2100]
Length = 165
Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 83/154 (53%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
++ + ++T+VD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASP
Sbjct: 5 QKMNNAPVVLTTVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGARYDFDRFGTIFRASP 64
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQS+VMI+AGTL+ K A RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+
Sbjct: 65 RQSEVMIIAGTLSKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRII 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
PVDIYVPGC P E + +++LQK+IR+ +
Sbjct: 124 PVDIYVPGCAPRPETFQFALMILQKRIRKEKASR 157
>gi|320102221|ref|YP_004177812.1| NADH-quinone oxidoreductase subunit B [Isosphaera pallida ATCC
43644]
gi|319749503|gb|ADV61263.1| NADH-quinone oxidoreductase, B subunit [Isosphaera pallida ATCC
43644]
Length = 247
Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 73/182 (40%), Positives = 106/182 (58%), Gaps = 7/182 (3%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
L T + + + + G ++TS+D +V W R S M F
Sbjct: 20 LATTASPTVLTPTRALGQITSGPVEELPE-----GVILTSLDSVVNWCRKYSFWPMPFAT 74
Query: 63 ACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
ACC +E+M R+D+ RFG R SPRQ D+MIVAG + KM L+R++ QMPEP+
Sbjct: 75 ACCGIELMSVGASRFDIARFGAEVMRFSPRQCDLMIVAGRVVMKMMPVLQRIWLQMPEPK 134
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+ ISMG+CA+ GG + +Y+VV+G DR +PVD+Y+PGCPP E ++ IL LQ K++R G
Sbjct: 135 WCISMGACASTGGIF-DTYAVVQGIDRFIPVDVYIPGCPPRPEQILRAILDLQDKVQRGG 193
Query: 182 NV 183
+
Sbjct: 194 KL 195
>gi|183599635|ref|ZP_02961128.1| hypothetical protein PROSTU_03122 [Providencia stuartii ATCC 25827]
gi|188021887|gb|EDU59927.1| hypothetical protein PROSTU_03122 [Providencia stuartii ATCC 25827]
Length = 224
Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 77/169 (45%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+ E V + + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQTQEIVTDPLEQQVKNSVYMGKLSHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMGSCAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|91203915|emb|CAJ71568.1| strongly similar to proton-translocating NADH dehydrogenase I chain
B [Candidatus Kuenenia stuttgartiensis]
Length = 155
Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 81/145 (55%), Positives = 111/145 (76%), Gaps = 2/145 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94
L T++ +V WAR SL M FGLACCA+EMM PR+DL RFG R SPRQSD
Sbjct: 9 DNILTTTLTTMVNWARKSSLWPMPFGLACCAIEMMAVVAPRHDLARFGAEVFRFSPRQSD 68
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTLT KMAS +++Y+QMPEP++V++MG+CA GG ++ +YSVV+G ++++PVD+
Sbjct: 69 LMIVAGTLTYKMASVAKKIYEQMPEPKWVVAMGACAVSGGVFN-TYSVVQGLEQVIPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIRR 179
Y+PGCPP EALI+ I+ +QKKI++
Sbjct: 128 YLPGCPPRPEALIHAIMEIQKKIQK 152
>gi|330465203|ref|YP_004402946.1| NADH dehydrogenase subunit B [Verrucosispora maris AB-18-032]
gi|328808174|gb|AEB42346.1| NADH dehydrogenase subunit B [Verrucosispora maris AB-18-032]
Length = 225
Score = 206 bits (523), Expect = 2e-51, Method: Composition-based stats.
Identities = 82/151 (54%), Positives = 110/151 (72%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+TSV++LV W+R S+ TFGLACCA+EMM A P YD+ R+G RAS
Sbjct: 4 EEKLPAGVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EPR+V+SMG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E LI IL L++KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLREKIGHE 153
>gi|307721750|ref|YP_003892890.1| NADH dehydrogenase subunit B [Sulfurimonas autotrophica DSM 16294]
gi|306979843|gb|ADN09878.1| NADH dehydrogenase subunit B [Sulfurimonas autotrophica DSM 16294]
Length = 169
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 87/145 (60%), Positives = 111/145 (76%), Gaps = 1/145 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
+TSVD++V W R+ SL +T+GLACC +EMM + RYD +RFG RASPRQ+DVMI
Sbjct: 16 IALTSVDKIVNWGRSNSLWALTYGLACCGIEMMASGASRYDFDRFGTIFRASPRQADVMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLT K A ++R+YDQM EPR+VISMGSCAN GG ++ +Y+ V+GCDRI+PVD+Y+P
Sbjct: 76 VAGTLTKKHAEFIKRLYDQMTEPRWVISMGSCANTGGMFN-TYATVQGCDRIIPVDLYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
GC P E L YG++LLQKKIR
Sbjct: 135 GCAPRPETLQYGVMLLQKKIRANKA 159
>gi|254480961|ref|ZP_05094207.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [marine
gamma proteobacterium HTCC2148]
gi|41582331|gb|AAS07945.1| NADH-quinone oxidoreductase, B subunit [uncultured marine bacterium
463]
gi|214038756|gb|EEB79417.1| NADH-quinone oxidoreductase, B subunit subfamily, putative [marine
gamma proteobacterium HTCC2148]
Length = 214
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 71/171 (41%), Positives = 103/171 (60%), Gaps = 2/171 (1%)
Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
+ + E + ++ L+ W R SL FGL+CC VEM +
Sbjct: 6 SKPEDVIASSPGGSDISIEEQIKRNVFFARLEDLIAWGRAHSLWPFNFGLSCCYVEMATS 65
Query: 73 SMPRYDLERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
R+D+ RFG RA+PRQ+D+M+++GT+ KMA ++ +YDQ+ EPR++ISMGSCAN
Sbjct: 66 FTSRHDIARFGSEVIRATPRQADLMVISGTVFRKMAPVVQHLYDQLLEPRWIISMGSCAN 125
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GG Y YSVV+G D+ +PVD+YVPGCPP EAL+ G+++LQ I +
Sbjct: 126 SGGMY-DIYSVVQGVDKFIPVDVYVPGCPPRPEALMQGLMMLQDAIEQERR 175
>gi|320354161|ref|YP_004195500.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
gi|320122663|gb|ADW18209.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
Length = 170
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 64/149 (42%), Positives = 99/149 (66%), Gaps = 2/149 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
L T +D ++ W R SL FG ACCA+E M A+ + D+ R+G R SPRQ+D
Sbjct: 11 DSVLTTKLDAVINWGREYSLWPFVFGTACCAIEFMSAAASQLDISRWGAEVVRFSPRQAD 70
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+++V GT++ K A L+R+Y+QMPEP++V++MG+CA+ GG Y +Y V+G D I+PVD+
Sbjct: 71 LLLVCGTISYKQAPILKRIYEQMPEPKWVVAMGACASSGGVY-DNYCTVQGIDTIIPVDV 129
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
Y+ GCPP EA++ ++ +Q KI+ +
Sbjct: 130 YISGCPPRPEAVLDALMKIQDKIKGESVL 158
>gi|261416512|ref|YP_003250195.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261372968|gb|ACX75713.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302327904|gb|ADL27105.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 211
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 72/157 (45%), Positives = 101/157 (64%), Gaps = 2/157 (1%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-R 87
+ +E + +S+D LV W R+ SL +G ACCA+E M + RYDL R G R
Sbjct: 1 MGNEAEKPNIITSSLDFLVNWGRSNSLWPFPYGTACCAIEFMSTEVGRYDLSRIGSEYVR 60
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
+PRQSDV++VAGT+T K A L+R+Y+QM EPR+VI+MG+CA+ GG ++ Y V G D
Sbjct: 61 FTPRQSDVLLVAGTITYKQAPILKRIYEQMAEPRWVIAMGACASSGG-FYDCYCTVPGID 119
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
I+PVD+Y+ GCPP EA + LQKK++ +K
Sbjct: 120 HIIPVDVYIGGCPPRPEAFFDAMFDLQKKVKDESFMK 156
>gi|114329866|ref|YP_740769.1| NADH dehydrogenase subunit 10 [Tetrahymena paravorax]
gi|114150099|gb|ABI51678.1| NADH dehydrogenase subunit 10 [Tetrahymena paravorax]
Length = 162
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 97/143 (67%), Positives = 123/143 (86%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++VT V+ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++
Sbjct: 5 YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124
Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
GCPPTAEAL++G+L LQK + R
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQ 147
>gi|320009166|gb|ADW04016.1| NADH-quinone oxidoreductase, B subunit [Streptomyces flavogriseus
ATCC 33331]
Length = 205
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 78/140 (55%), Positives = 103/140 (73%), Gaps = 1/140 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+
Sbjct: 35 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 94
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 95 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 154
Query: 165 ALIYGILLLQKKIRRVGNVK 184
AL+ GIL LQ+KI R +
Sbjct: 155 ALLQGILKLQEKIARESLAE 174
>gi|221136116|ref|XP_002171279.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
7 [Hydra magnipapillata]
Length = 175
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 67/150 (44%), Positives = 103/150 (68%), Gaps = 2/150 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSD 94
+GF T +DQ+V AR SL + F +CC +E M YDL RFG + SPRQ+D
Sbjct: 11 EGFFATKLDQVVGLARANSLWPLPFATSCCGIEFMATMASHYDLARFGSERVSFSPRQAD 70
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+++V GT++ KMA LR+VY+QM EPR+VI++G+CA+ GG + +YSV++G D+++PVD+
Sbjct: 71 MLLVMGTISKKMAPILRQVYEQMSEPRWVIAVGACASSGGIF-DTYSVLQGIDKVIPVDV 129
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YVPGCPP E ++ G++ LQ+ ++ +
Sbjct: 130 YVPGCPPRPEQIVDGVMQLQELVKSESQRR 159
>gi|271962156|ref|YP_003336352.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
gi|270505331|gb|ACZ83609.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
Length = 183
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 78/152 (51%), Positives = 108/152 (71%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
E GF++++V+Q+ WAR S+ TFGLACCA+E+M P++DL RFG AS
Sbjct: 4 EEKLPSGFMLSTVEQVAGWARKNSVWPATFGLACCAIELMSTGGPKHDLARFGMERASAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG L+ KMA LR++YDQM EP++VI+MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRLSQKMAPVLRQIYDQMAEPKWVIAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E LI I+ L KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLIDAIVKLHDKIQNTK 154
>gi|268591136|ref|ZP_06125357.1| NADH dehydrogenase I subunit B [Providencia rettgeri DSM 1131]
gi|291313438|gb|EFE53891.1| NADH dehydrogenase I subunit B [Providencia rettgeri DSM 1131]
Length = 224
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+ + V + + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQTQKIVTDPLEQQVENSVYMGKLSHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMGSCAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|300711699|ref|YP_003737513.1| NADH dehydrogenase-like complex subunit B [Halalkalicoccus jeotgali
B3]
gi|299125382|gb|ADJ15721.1| NADH dehydrogenase-like complex subunit B [Halalkalicoccus jeotgali
B3]
Length = 233
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 73/179 (40%), Positives = 117/179 (65%), Gaps = 1/179 (0%)
Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
+ N + + + + + + SR+ F++T D+ + WAR S+ + FG
Sbjct: 8 SIAESNDAMTATREARMGDVDNRFNSRLREAFGSSPFILTKFDKFLNWARGSSMFMLQFG 67
Query: 62 LACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
+ACC++EMM ++DL+RFG PRASPRQ+D +I+ GT+ +K A ++RVYDQM EP
Sbjct: 68 IACCSLEMMHTYAVKHDLDRFGSGVPRASPRQADTIIIPGTIVSKFAPRMKRVYDQMAEP 127
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
++V++MGSCA GG + Y+V++G + ++PVDI+VPGCPP EAL+YG++ LQ++I
Sbjct: 128 KFVVNMGSCAISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALVYGVVKLQERIAE 186
>gi|239610399|gb|EEQ87386.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces
dermatitidis ER-3]
Length = 245
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 95/169 (56%), Positives = 123/169 (72%), Gaps = 1/169 (0%)
Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
+E+ + + G + S+D + W R SL ++ GLACC +EMM SMPR
Sbjct: 72 ARMERSSSLLPSQDEKTGTMGHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPR 131
Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
YD +R G RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYY
Sbjct: 132 YDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYY 191
Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK-IRRVGNVK 184
HYSYSVVRG DR++PVD+Y+PGCPPTAEAL+Y I ++++K I + +
Sbjct: 192 HYSYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISVVRRKLIVKSRTTR 240
>gi|15027638|ref|NP_149372.1| NADH dehydrogenase subunit 10 [Tetrahymena thermophila]
gi|15011474|gb|AAK77569.1|AF396436_9 NADH dehydrogenase subunit 10 [Tetrahymena thermophila]
Length = 162
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 96/143 (67%), Positives = 123/143 (86%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++VT ++ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++
Sbjct: 5 YIVTPINAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124
Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
GCPPTAEAL++G+L LQK + R
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQ 147
>gi|269128612|ref|YP_003301982.1| NADH-quinone oxidoreductase subunit B [Thermomonospora curvata DSM
43183]
gi|268313570|gb|ACY99944.1| NADH-quinone oxidoreductase, B subunit [Thermomonospora curvata DSM
43183]
Length = 183
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 82/152 (53%), Positives = 108/152 (71%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RAS 89
E GFL+T+V+Q+V WAR S TFGLACCA+EMM A PR+D R+G A+
Sbjct: 4 EEKLPSGFLLTTVEQVVGWARRSSTWPATFGLACCAIEMMAAGDPRHDFSRWGMERASAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++VI+MG CA+ GG ++ +Y+VV+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMTEPKWVIAMGVCASSGGMFN-NYAVVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E LI I+ L KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLIDAIVKLHDKIQNTK 154
>gi|149909804|ref|ZP_01898455.1| NuoB2 NADH I CHAIN B [Moritella sp. PE36]
gi|149807136|gb|EDM67092.1| NuoB2 NADH I CHAIN B [Moritella sp. PE36]
Length = 181
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 82/143 (57%), Positives = 109/143 (76%), Gaps = 1/143 (0%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
L T+ D ++ W+R SL TFG+ACCA+EM+ A RYDL+RFG R+SPRQSD
Sbjct: 9 KDNVLFTTSDSIINWSRKSSLWPETFGIACCAIEMIAAGCARYDLDRFGVVFRSSPRQSD 68
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
VMI+AGT+T KMA +RR+YDQMPEPRYVI+MG+CA GG Y+ +YSVV+G D VPVD+
Sbjct: 69 VMIIAGTVTKKMAPIIRRLYDQMPEPRYVIAMGTCAISGGVYN-TYSVVQGSDLFVPVDV 127
Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
+V GCPP +AL++ ++LLQ++I
Sbjct: 128 HVAGCPPRPDALLHAMVLLQQQI 150
>gi|145596575|ref|YP_001160872.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica
CNB-440]
gi|238065041|sp|A4XC37|NUOB2_SALTO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|145305912|gb|ABP56494.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica
CNB-440]
Length = 226
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+TSV++ V W+R S+ TFGLACCA+EMM A P YD+ R+G RAS
Sbjct: 4 EEKLPAGVLLTSVEKFVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EPR+V+SMG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E LI IL L++KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLREKIMHE 153
>gi|159039974|ref|YP_001539227.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola
CNS-205]
gi|238065040|sp|A8M621|NUOB2_SALAI RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|157918809|gb|ABW00237.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola
CNS-205]
Length = 226
Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 110/151 (72%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+TSV++LV W+R S+ TFGLACCA+EMM A P YD+ R+G RAS
Sbjct: 4 EEKLPAGVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EPR+V+SMG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E LI +L L++KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAVLKLREKIMHE 153
>gi|46446194|ref|YP_007559.1| NADH-ubiquinone oxidoreductase chain B [Candidatus Protochlamydia
amoebophila UWE25]
gi|81627441|sp|Q6MDR5|NUOB_PARUW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|46399835|emb|CAF23284.1| probable NADH-ubiquinone oxidoreductase chain B [Candidatus
Protochlamydia amoebophila UWE25]
Length = 164
Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats.
Identities = 78/152 (51%), Positives = 111/152 (73%), Gaps = 2/152 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
++ + FL+ +++LV WAR+ SL FGLACCA+EMM + RYDL RFG
Sbjct: 2 GMNHQQEKTPFLIAPLEKLVNWARSNSLWPAQFGLACCAIEMMSTAASRYDLARFGMEVF 61
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQSDVMIVAG ++ KMA L+ +Y+QM EP++VI+MG CA+ GG Y+ +Y++++G
Sbjct: 62 RASPRQSDVMIVAGRVSQKMAPVLQTIYEQMLEPKWVIAMGDCASCGGVYN-NYAIIQGV 120
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
D++VPVD+Y+ GCPP EALI +++LQ KI+
Sbjct: 121 DKLVPVDVYLAGCPPRPEALIDALIMLQNKIK 152
>gi|311897891|dbj|BAJ30299.1| putative NADH-quinone oxidoreductase subunit B [Kitasatospora setae
KM-6054]
Length = 184
Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats.
Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+TSV+ W R SL TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTSVEAAAGWVRKASLFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E L+ I+ L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAIIKLHEKIQHEK 154
>gi|182436717|ref|YP_001824436.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|238065043|sp|B1W4V9|NUOB2_STRGG RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|178465233|dbj|BAG19753.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 235
Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 84/185 (45%), Positives = 111/185 (60%), Gaps = 2/185 (1%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
MGLT+ Q + + ++ W R SL F
Sbjct: 1 MGLTSRPTPASR-QPASPPPADPVLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFNF 59
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
GLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+KMA A++R+Y+QMPE
Sbjct: 60 GLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMPE 119
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI R
Sbjct: 120 PKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAR 179
Query: 180 VGNVK 184
+
Sbjct: 180 ESLAE 184
>gi|261885026|ref|ZP_06009065.1| NADH-quinone oxidoreductase chain b [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 168
Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 69/152 (45%), Positives = 99/152 (65%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF-GFAPRAS 89
+ ++T +D L W R SL M FG ACCA+E M A ++DL RF R S
Sbjct: 4 ENLVQNDVVLTRLDALFNWGRKNSLWPMIFGTACCAIEFMSAVSSKHDLSRFEAEVMRFS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MI+AGT++ K A L+ +YDQM EP++V+SMG+CA GG ++ +Y+ ++G D+I
Sbjct: 64 PRQADLMIIAGTISFKQAPILKEIYDQMCEPKWVVSMGACACSGG-FYDNYTTLQGIDQI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+PVD+Y+ GCPP EA+I IL +Q KI
Sbjct: 123 IPVDVYISGCPPRPEAIIDAILAIQDKISNES 154
>gi|302536203|ref|ZP_07288545.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. C]
gi|302445098|gb|EFL16914.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. C]
Length = 203
Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 82/171 (47%), Positives = 111/171 (64%), Gaps = 5/171 (2%)
Query: 16 SCSLEKVDADFSRISSEITHKGFL----VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ ++ ++ E G L + ++ W R SL FGLACCA+E +
Sbjct: 4 TPAVTPEPQPQPQLLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFNFGLACCAIEFIA 63
Query: 72 ASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
ASM R+D R G P PRQ+D+MIV+GT+T+KMA A++R+Y+QMPEP+YVIS G+C+
Sbjct: 64 ASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACS 123
Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI R
Sbjct: 124 NCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARES 174
>gi|283778533|ref|YP_003369288.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068]
gi|283436986|gb|ADB15428.1| NADH-quinone oxidoreductase, B subunit [Pirellula staleyi DSM 6068]
Length = 192
Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 73/149 (48%), Positives = 98/149 (65%), Gaps = 2/149 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94
+ +VT +D+L W R SL M F ACC +E+M R+DL RFG R SPRQ D
Sbjct: 7 ENVMVTKLDELANWCRKNSLWPMPFATACCGIELMATGASRHDLARFGAEVFRFSPRQCD 66
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAG + KM L+R++ QM EP++ ISMG+CA+ GG + +Y+VV+G DR +PVD+
Sbjct: 67 LMIVAGRVVMKMLPVLQRIWQQMHEPKWCISMGACASTGGVF-DTYAVVQGIDRFIPVDM 125
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGCPP E L I+ LQ KI+R G +
Sbjct: 126 YVPGCPPRPEQLTQAIIDLQDKIQREGTI 154
>gi|11466261|ref|NP_049576.1| NADH dehydrogenase subunit 10 [Tetrahymena pyriformis]
gi|5306137|gb|AAD41921.1|AF160864_9 NADH dehydrogenase subunit 10 [Tetrahymena pyriformis]
Length = 162
Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 97/143 (67%), Positives = 123/143 (86%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++VT V+ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++
Sbjct: 5 YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124
Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
GCPPTAEAL++G+L LQK + R
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQ 147
>gi|114329820|ref|YP_740724.1| NADH dehydrogenase subunit 10 [Tetrahymena malaccensis]
gi|114150053|gb|ABI51633.1| NADH dehydrogenase subunit 10 [Tetrahymena malaccensis]
Length = 162
Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 96/143 (67%), Positives = 123/143 (86%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++VT ++ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++
Sbjct: 5 YIVTPINAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124
Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
GCPPTAEAL++G+L LQK + R
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQ 147
>gi|291303411|ref|YP_003514689.1| NADH-quinone oxidoreductase subunit B [Stackebrandtia nassauensis
DSM 44728]
gi|290572631|gb|ADD45596.1| NADH-quinone oxidoreductase, B subunit [Stackebrandtia nassauensis
DSM 44728]
Length = 188
Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 78/156 (50%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + G L + ++ W R SL FGLACCA+E + +SM R+D R G P
Sbjct: 6 GMPKKGGIGGVLGEPIRFVLNWGRRYSLWVFNFGLACCAIEFIASSMGRHDFMRLGVIPF 65
Query: 88 AS-PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
A PRQ+D+M+V+GT+T+KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G
Sbjct: 66 AHGPRQADLMVVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGV 125
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+++PVD+YVPGCPP EAL++GI+ LQ+KI +
Sbjct: 126 DQLIPVDVYVPGCPPRPEALLHGIMRLQEKIASEQS 161
>gi|158317835|ref|YP_001510343.1| NADH dehydrogenase subunit B [Frankia sp. EAN1pec]
gi|238065147|sp|A8LCA0|NUOB_FRASN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|158113240|gb|ABW15437.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EAN1pec]
Length = 264
Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 81/148 (54%), Positives = 108/148 (72%), Gaps = 2/148 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+T+V++L W+R SL TFGLACCA+EMM RYDL RFG RAS
Sbjct: 4 EEKLPGGVLLTTVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
VPVD+Y+PGCPP E L+ I+ L +KI
Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIVKLHEKI 150
>gi|332883543|gb|EGK03826.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas mossii DSM
22836]
Length = 183
Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
GF T D ++ AR SL + F +CC +E M YD+ RFG
Sbjct: 11 PAPDGYRGHGFFATKFDYVIGLARANSLWPLPFATSCCGIEFMATMAATYDMGRFGAERN 70
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
SPRQ+D+++V GT++ KMA LR VY+QM EP++VI++G+CA+ GG + +YSV++G
Sbjct: 71 SFSPRQADMLMVMGTISKKMAPILRHVYEQMAEPKWVIAVGACASSGGIF-DTYSVLQGI 129
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVD+YVPGCPP E ++ G++ LQ+ ++ ++
Sbjct: 130 DKVIPVDVYVPGCPPRPEQILDGVMQLQELVKHESILR 167
>gi|114329910|ref|YP_740813.1| NADH dehydrogenase subunit 10 [Tetrahymena pigmentosa]
gi|114150143|gb|ABI51721.1| NADH dehydrogenase subunit 10 [Tetrahymena pigmentosa]
Length = 162
Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats.
Identities = 97/143 (67%), Positives = 123/143 (86%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++VT V+ +V+WAR GS +TFGLACCAVEMM A++ RYD +RFG RA+PRQ+D+++
Sbjct: 5 YIVTPVNAVVSWARQGSFWPLTFGLACCAVEMMHATVSRYDFDRFGVIFRATPRQADLIL 64
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLTNKMA LRR+Y+Q +P++V+SMGSCANGGGYYHYSYSVVRGC+RI+PVDIYVP
Sbjct: 65 VAGTLTNKMAPGLRRLYEQTLDPKWVLSMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVP 124
Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
GCPPTAEAL++G+L LQK + R
Sbjct: 125 GCPPTAEALMFGVLQLQKSLYRQ 147
>gi|261195670|ref|XP_002624239.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces
dermatitidis SLH14081]
gi|239588111|gb|EEQ70754.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces
dermatitidis SLH14081]
Length = 244
Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats.
Identities = 95/169 (56%), Positives = 123/169 (72%), Gaps = 1/169 (0%)
Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
+E+ + + G + S+D + W R SL ++ GLACC +EMM SMPR
Sbjct: 71 ARMERSTSLLPSQDEKTGTMGHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPR 130
Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
YD +R G RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYY
Sbjct: 131 YDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYY 190
Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK-IRRVGNVK 184
HYSYSVVRG DR++PVD+Y+PGCPPTAEAL+Y I ++++K I + +
Sbjct: 191 HYSYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISVVRRKLIVKSRTTR 239
>gi|150375773|ref|YP_001312369.1| NADH dehydrogenase subunit B [Sinorhizobium medicae WSM419]
gi|150030320|gb|ABR62436.1| NADH-quinone oxidoreductase, B subunit [Sinorhizobium medicae
WSM419]
Length = 167
Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats.
Identities = 81/153 (52%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
++ L T+ + +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SP
Sbjct: 5 NDAIRDSVLFTTAESIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+G + V
Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD++VPGCPP EAL++G LLLQ+KI+ +
Sbjct: 124 PVDVHVPGCPPRPEALMHGFLLLQEKIKTSRAL 156
>gi|26990814|ref|NP_746239.1| NADH dehydrogenase subunit B [Pseudomonas putida KT2440]
gi|148546983|ref|YP_001267085.1| NADH dehydrogenase subunit B [Pseudomonas putida F1]
gi|81586001|sp|Q88FH6|NUOB_PSEPK RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065196|sp|A5W191|NUOB_PSEP1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|24985820|gb|AAN69703.1|AE016606_6 NADH dehydrogenase I, B subunit [Pseudomonas putida KT2440]
gi|148511041|gb|ABQ77901.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida F1]
gi|313498030|gb|ADR59396.1| NuoB [Pseudomonas putida BIRD-1]
Length = 225
Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 107/176 (60%), Gaps = 6/176 (3%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
+ + + + ++ + HK + ++ + V W R SL FGL+CC V
Sbjct: 12 APNEQYPVGERETVTDQLLEDQVHKNIFMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYV 71
Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM
Sbjct: 72 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISM 131
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I +
Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERR 186
>gi|253989001|ref|YP_003040357.1| NADH dehydrogenase subunit B [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253780451|emb|CAQ83613.1| nadh dehydrogenase i chain b (nadh-ubiquinone oxidoreductase chain
2 (nuo2) [Photorhabdus asymbiotica]
Length = 224
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 77/169 (45%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ LV W R SL FGL+CC VEM +
Sbjct: 18 PLQKQEIVADPLEQHVHRSVYMGKLEHALHDLVNWGRKNSLWPYNFGLSCCYVEMATSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|91065096|gb|ABE03928.1| NuoB [Theonella swinhoei bacterial symbiont clone pSW1H8]
Length = 178
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 85/160 (53%), Positives = 117/160 (73%), Gaps = 2/160 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ F R E+ G L +++ +LV W R+ SL TFGLACCA+EMMQ++ R DL
Sbjct: 1 MALRDLFERDVQELETDGILFSTLGKLVAWGRSNSLWPATFGLACCAIEMMQSTNSRNDL 60
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG RASPRQ+DVMIVAG L+ KMA +RRVY+QMP+P++VISMG+CA+ GG ++
Sbjct: 61 ARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVYEQMPDPKWVISMGACASSGGMFN- 119
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+Y++V+ D +VPVDI+VPGCPP EAL+Y ++ LQK++R
Sbjct: 120 NYAIVQNVDSVVPVDIFVPGCPPRPEALVYAVMQLQKRVR 159
>gi|282860763|ref|ZP_06269829.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE]
gi|282564499|gb|EFB70035.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE]
Length = 211
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 79/137 (57%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+
Sbjct: 41 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRMGVIPFAPGPRQADLMVVSGTVTD 100
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A+RR+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 101 KMAPAVRRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 160
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GIL LQ+KI R
Sbjct: 161 ALLQGILKLQEKIARES 177
>gi|21222983|ref|NP_628762.1| NADH dehydrogenase subunit NuoB2 [Streptomyces coelicolor A3(2)]
gi|81621857|sp|Q9F2W1|NUOB2_STRCO RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|10129745|emb|CAC08301.1| NADH dehydrogenase subunit NuoB2 [Streptomyces coelicolor A3(2)]
Length = 232
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 79/169 (46%), Positives = 105/169 (62%), Gaps = 1/169 (0%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
+ T + ++ W R SL FGLACCA+E + AS
Sbjct: 2 NPGEPADPAPVPLPEPKRLGTLARLAPEPMKVVLNWGRRYSLWVFNFGLACCAIEFIAAS 61
Query: 74 MPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
M R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YVIS G+C+N
Sbjct: 62 MARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNC 121
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI R
Sbjct: 122 GGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARES 170
>gi|23092541|gb|AAN08352.1| NADH dehydrogenase I subunit B [Photorhabdus temperata subsp.
temperata]
Length = 224
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ LV W R SL FGL+CC VEM +
Sbjct: 18 PLQKQEIVADPLEQHVHRSVYMGKLEHALHDLVNWGRKNSLWPYNFGLSCCYVEMATSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 185
>gi|307069594|ref|YP_003878071.1| putative NADH:ubiquinone oxidoreductase, chain B [Candidatus
Zinderia insecticola CARI]
gi|306482854|gb|ADM89725.1| putative NADH:ubiquinone oxidoreductase, chain B [Candidatus
Zinderia insecticola CARI]
Length = 149
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 95/145 (65%), Positives = 117/145 (80%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
I++ F S+ +L W+ + SL +TFGLACCA+EMM A R+DL++FG RASPRQ
Sbjct: 2 ISNTSFATFSIKKLKKWSYSKSLWPVTFGLACCAIEMMHAGSSRFDLDQFGLFFRASPRQ 61
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
SD++I+AGTL NKMA LRR+YDQMP P++VISMGSCANGGGYYHYSYSVVRGC+ I+PV
Sbjct: 62 SDLIIIAGTLCNKMAPVLRRIYDQMPIPKWVISMGSCANGGGYYHYSYSVVRGCNNIIPV 121
Query: 153 DIYVPGCPPTAEALIYGILLLQKKI 177
DIYVPGCPPT E L+Y I+ L+KKI
Sbjct: 122 DIYVPGCPPTPETLLYSIIQLKKKI 146
>gi|284164402|ref|YP_003402681.1| NADH-quinone oxidoreductase, B subunit [Haloterrigena turkmenica
DSM 5511]
gi|284014057|gb|ADB60008.1| NADH-quinone oxidoreductase, B subunit [Haloterrigena turkmenica
DSM 5511]
Length = 235
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 79/179 (44%), Positives = 113/179 (63%), Gaps = 2/179 (1%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
+ + S E D F+ ++ F++T D+ + W R S+ + FG
Sbjct: 10 IHGSTAPSTDTRDSRIGEGPDDRFNSKLREAFGSTPFILTKFDKFMNWVRGNSMFMLQFG 69
Query: 62 LACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
+ACC++EMM ++DL+RFG PRASPRQ+DVMIV GT+ +K ++RVYDQMPEP
Sbjct: 70 IACCSIEMMHTYAIKHDLDRFGAGVPRASPRQADVMIVPGTIVSKFGPRMKRVYDQMPEP 129
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
++V+ MGSC GG + Y+VV+G + I+PVDI+VPGCPP EAL+YGI LQ++IR
Sbjct: 130 KFVVGMGSCTISGGPFQEGYNVVKGAEEIIPVDIHVPGCPPRPEALVYGIAKLQERIRN 188
>gi|327349174|gb|EGE78031.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 172
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 95/167 (56%), Positives = 123/167 (73%), Gaps = 1/167 (0%)
Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
+E+ + + G + S+D + W R SL ++ GLACC +EMM SMPRYD
Sbjct: 1 MERSSSLLPSQDEKTGTMGHFLGSIDAVANWGRQASLWPISLGLACCGLEMMAVSMPRYD 60
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
+R G RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++VISMGSCANGGGYYHY
Sbjct: 61 QDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVISMGSCANGGGYYHY 120
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK-IRRVGNVK 184
SYSVVRG DR++PVD+Y+PGCPPTAEAL+Y I ++++K I + +
Sbjct: 121 SYSVVRGVDRLLPVDVYLPGCPPTAEALMYAISVVRRKLIVKSRTTR 167
>gi|328884356|emb|CCA57595.1| NADH-ubiquinone oxidoreductase chain B [Streptomyces venezuelae
ATCC 10712]
Length = 193
Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats.
Identities = 79/140 (56%), Positives = 103/140 (73%), Gaps = 1/140 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+
Sbjct: 29 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 88
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 89 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 148
Query: 165 ALIYGILLLQKKIRRVGNVK 184
AL+ GIL LQ+KI R +
Sbjct: 149 ALLQGILKLQEKIARESLAE 168
>gi|57238591|ref|YP_179722.1| NADH dehydrogenase subunit B [Campylobacter jejuni RM1221]
gi|148925724|ref|ZP_01809412.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
CG8486]
gi|205355593|ref|ZP_03222363.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
CG8421]
gi|81557394|sp|Q5HSL3|NUOB_CAMJR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|57167395|gb|AAW36174.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni
RM1221]
gi|145845734|gb|EDK22825.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
CG8486]
gi|205346370|gb|EDZ33003.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
CG8421]
gi|315059028|gb|ADT73357.1| NADH-ubiquinone oxidoreductase chain B [Campylobacter jejuni subsp.
jejuni S3]
Length = 167
Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats.
Identities = 84/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI
Sbjct: 14 VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTL K A RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP
Sbjct: 74 IAGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E+ + +++LQKKIR+ +
Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159
>gi|86149321|ref|ZP_01067552.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|86152325|ref|ZP_01070536.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86152543|ref|ZP_01070748.1| nadh-quinone oxidoreductase chain 6 [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|88596514|ref|ZP_01099751.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
jejuni 84-25]
gi|121613264|ref|YP_001001218.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni
81-176]
gi|167006111|ref|ZP_02271869.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni
81-176]
gi|218563167|ref|YP_002344947.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|283956950|ref|ZP_06374422.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
1336]
gi|315124988|ref|YP_004066992.1| NADH dehydrogenase beta subunit [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|123336622|sp|Q0P850|NUOB_CAMJE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238055279|sp|A1W1H7|NUOB_CAMJJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|85840103|gb|EAQ57361.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|85840814|gb|EAQ58065.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85843428|gb|EAQ60638.1| nadh-quinone oxidoreductase chain 6 [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87249799|gb|EAQ72758.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
jejuni 81-176]
gi|88191355|gb|EAQ95327.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112360874|emb|CAL35675.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|283791451|gb|EFC30248.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
1336]
gi|284926773|gb|ADC29125.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315018710|gb|ADT66803.1| NADH dehydrogenase beta subunit [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315927676|gb|EFV07007.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
jejuni DFVF1099]
Length = 167
Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats.
Identities = 84/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI
Sbjct: 14 VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTL K A RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP
Sbjct: 74 IAGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E+ + +++LQKKIR+ +
Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159
>gi|302864902|ref|YP_003833539.1| NADH-quinone oxidoreductase subunit B [Micromonospora aurantiaca
ATCC 27029]
gi|315501187|ref|YP_004080074.1| NADH-quinone oxidoreductase, b subunit [Micromonospora sp. L5]
gi|302567761|gb|ADL43963.1| NADH-quinone oxidoreductase, B subunit [Micromonospora aurantiaca
ATCC 27029]
gi|315407806|gb|ADU05923.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. L5]
Length = 226
Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats.
Identities = 82/151 (54%), Positives = 109/151 (72%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+TSV++LV W R S+ TFGLACCA+EMM A P YD+ R+G RAS
Sbjct: 4 EEKLPSGVLLTSVEKLVNWTRKTSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EPR+VISMG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVISMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E LI +L L++KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAVLKLREKIMHE 153
>gi|57168317|ref|ZP_00367451.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter
coli RM2228]
gi|153952278|ref|YP_001398860.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. doylei
269.97]
gi|157415794|ref|YP_001483050.1| NADH dehydrogenase subunit B [Campylobacter jejuni subsp. jejuni
81116]
gi|305432374|ref|ZP_07401536.1| NADH-quinone oxidoreductase subunit B [Campylobacter coli JV20]
gi|238055278|sp|A8FNN6|NUOB_CAMJ8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|254767792|sp|A7H5T0|NUOB_CAMJD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|57020125|gb|EAL56799.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter
coli RM2228]
gi|152939724|gb|ABS44465.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
doylei 269.97]
gi|157386758|gb|ABV53073.1| NADH dehydrogenase I chain B [Campylobacter jejuni subsp. jejuni
81116]
gi|304444413|gb|EFM37064.1| NADH-quinone oxidoreductase subunit B [Campylobacter coli JV20]
gi|307748433|gb|ADN91703.1| NADH-quinone oxidoreductase subunit B [Campylobacter jejuni subsp.
jejuni M1]
gi|315929523|gb|EFV08716.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
jejuni 305]
gi|315931258|gb|EFV10228.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
jejuni 327]
Length = 167
Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats.
Identities = 84/147 (57%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI
Sbjct: 14 VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTL K A RR+YDQMP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP
Sbjct: 74 IAGTLCKKHAEFTRRLYDQMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E+ + +++LQKKIR+ +
Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159
>gi|293395171|ref|ZP_06639457.1| NADH dehydrogenase I subunit B [Serratia odorifera DSM 4582]
gi|291422348|gb|EFE95591.1| NADH dehydrogenase I subunit B [Serratia odorifera DSM 4582]
Length = 224
Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats.
Identities = 75/169 (44%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQQQEIVADPLEQQVHRTVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|197285619|ref|YP_002151491.1| NADH dehydrogenase subunit B [Proteus mirabilis HI4320]
gi|226327884|ref|ZP_03803402.1| hypothetical protein PROPEN_01765 [Proteus penneri ATCC 35198]
gi|227356122|ref|ZP_03840512.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis ATCC 29906]
gi|238065191|sp|B4EZC9|NUOB_PROMH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|194683106|emb|CAR43667.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis HI4320]
gi|225203588|gb|EEG85942.1| hypothetical protein PROPEN_01765 [Proteus penneri ATCC 35198]
gi|227163767|gb|EEI48679.1| NADH-quinone oxidoreductase chain B [Proteus mirabilis ATCC 29906]
Length = 224
Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
S E V + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQSQEIVSDPLDAHVHRSVYMGKLEHALHDVVNWGRKNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGSEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 185
>gi|325277477|ref|ZP_08143082.1| NADH dehydrogenase subunit B [Pseudomonas sp. TJI-51]
gi|324097393|gb|EGB95634.1| NADH dehydrogenase subunit B [Pseudomonas sp. TJI-51]
Length = 225
Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 107/176 (60%), Gaps = 6/176 (3%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
+ + + + ++ + HK + ++ + V W R SL FGL+CC V
Sbjct: 12 APNEQYPVGERETVTDQLLEDQVHKNIFMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYV 71
Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM
Sbjct: 72 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISM 131
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I +
Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERR 186
>gi|150026262|ref|YP_001297088.1| NADH dehydrogenase I, B subunit [Flavobacterium psychrophilum
JIP02/86]
gi|238065145|sp|A6H1R3|NUOB_FLAPJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|149772803|emb|CAL44287.1| NADH dehydrogenase I, B subunit [Flavobacterium psychrophilum
JIP02/86]
Length = 181
Score = 204 bits (519), Expect = 4e-51, Method: Composition-based stats.
Identities = 65/161 (40%), Positives = 105/161 (65%), Gaps = 2/161 (1%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF 84
+ +T +GF T ++ +V AR S+ + F +CC +E M YDL RFG
Sbjct: 6 NIVEAPEGVTGEGFFATKLNDVVGLARANSMWPLPFATSCCGIEFMATMASHYDLARFGS 65
Query: 85 APRA-SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
+ SPRQ+D+++V GT++ KMA LR+VY+QM EPR+VI++G+CA+ GG + +YSV+
Sbjct: 66 ERVSFSPRQADMLMVMGTISKKMAPILRQVYEQMAEPRWVIAVGACASSGGIF-DTYSVL 124
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+G D+++PVD+YVPGCPP E ++ G++ LQ+ ++ +
Sbjct: 125 QGIDKVIPVDVYVPGCPPRPEQIVDGVMRLQELVKSESVRR 165
>gi|301061312|ref|ZP_07202094.1| NADH dehydrogenase, C subunit [delta proteobacterium NaphS2]
gi|300444631|gb|EFK08614.1| NADH dehydrogenase, C subunit [delta proteobacterium NaphS2]
Length = 484
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 2/148 (1%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVM 96
+++ D ++ WAR S M FGL+CC +E M RYD+ RFG R +PRQ+D++
Sbjct: 10 MVISMADDVINWARQYSFWPMFFGLSCCFIEQMVTYTSRYDISRFGAEVLRGTPRQADLL 69
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
I +GT+ K+A + R+Y+QMPEP++V+SMGSC+N GG Y YSVV+G D+I+PVDIY+
Sbjct: 70 ITSGTIFKKIAPVVLRLYEQMPEPKWVMSMGSCSNCGGMY-DVYSVVQGIDQILPVDIYI 128
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184
PGCPP EA++ G+ LLQKK++ +
Sbjct: 129 PGCPPRPEAVLQGLTLLQKKVKGERPTR 156
>gi|297192751|ref|ZP_06910149.1| NADH dehydrogenase subunit I B [Streptomyces pristinaespiralis ATCC
25486]
gi|297151481|gb|EDY64969.2| NADH dehydrogenase subunit I B [Streptomyces pristinaespiralis ATCC
25486]
Length = 232
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 84/186 (45%), Positives = 115/186 (61%), Gaps = 7/186 (3%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL----VTSVDQLVTWARTGSLM 56
M +T + + + + + + E G L + ++ W R SL
Sbjct: 1 MDVTPTSNQ--TPSPASTPAPASTPAPELLPEPRRLGALARLAPEPMKVILNWGRRYSLW 58
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYD 115
FGLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+KMA A++R+Y+
Sbjct: 59 VFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYE 118
Query: 116 QMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+
Sbjct: 119 QMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQE 178
Query: 176 KIRRVG 181
KI R
Sbjct: 179 KIARES 184
>gi|294496248|ref|YP_003542741.1| F420H2 dehydrogenase subunit B [Methanohalophilus mahii DSM 5219]
gi|292667247|gb|ADE37096.1| F420H2 dehydrogenase subunit B [Methanohalophilus mahii DSM 5219]
Length = 191
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 97/158 (61%), Gaps = 3/158 (1%)
Query: 22 VDADFSRISSEITHKGFLV-TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ + S EI FL T + W R SL +M + CC VE++ M D +
Sbjct: 25 IPGVVTTTSQEINK--FLQKTKAQDFINWGRKNSLWFMAQAMGCCGVEIIVTGMSPMDTD 82
Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
RFG PR SPRQ+DVMI++G +T K AL+++YDQMP P++VI MG C+ GG ++ SY
Sbjct: 83 RFGIIPRNSPRQADVMIISGYVTKKYLPALKKLYDQMPSPKWVICMGDCSISGGPFYESY 142
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
S V+ D I PVD+++PGCPP EALI G L +QKKI
Sbjct: 143 STVQNIDEIFPVDVFIPGCPPRPEALIQGFLEIQKKIE 180
>gi|146299005|ref|YP_001193596.1| NADH-quinone oxidoreductase, B subunit [Flavobacterium johnsoniae
UW101]
gi|238065144|sp|A5FKI9|NUOB_FLAJ1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|146153423|gb|ABQ04277.1| NADH dehydrogenase subunit B [Flavobacterium johnsoniae UW101]
Length = 182
Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 104/156 (66%), Gaps = 2/156 (1%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA- 88
+T +GF T ++ +V AR SL + F +CC +E M YDL RFG +
Sbjct: 12 PEGLTGEGFFATKLNDVVGLARANSLWPLPFATSCCGIEFMATMAAHYDLARFGSERVSF 71
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPRQ+D+++V GT++ KMA LR+VY+QM EPR+VI++G+CA+ GG + +YSV++G D+
Sbjct: 72 SPRQADMLLVMGTISKKMAPILRQVYEQMSEPRWVIAVGACASSGGVF-DTYSVLQGIDK 130
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
++PVD+YVPGCPP E ++ G++ LQ+ ++ +
Sbjct: 131 VIPVDVYVPGCPPRPEQIVDGVMRLQELVKSESVRR 166
>gi|320529348|ref|ZP_08030436.1| NADH dehydrogenase subunit B [Selenomonas artemidis F0399]
gi|320138314|gb|EFW30208.1| NADH dehydrogenase subunit B [Selenomonas artemidis F0399]
Length = 178
Score = 204 bits (518), Expect = 5e-51, Method: Composition-based stats.
Identities = 79/153 (51%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
E V +DQL WA S+ ++ GLACCA+EMM + R+DL RFG+ R P
Sbjct: 9 ESLRHNVFVVKIDQLFRWAHASSIWPLSSGLACCAIEMMSTATARFDLARFGYEVFRPCP 68
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D++IVAGTLT KMA + R+Y+QMPEP+YVI+MG+C GG + SYSVV G D I+
Sbjct: 69 RQADLLIVAGTLTWKMAEPIVRLYEQMPEPKYVIAMGACTIAGGPFADSYSVVPGIDDIL 128
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+Y+PGCPP EAL+ G+L L++KI V
Sbjct: 129 PVDVYIPGCPPRPEALMDGMLKLREKILHPERV 161
>gi|157144782|ref|YP_001452101.1| NADH dehydrogenase subunit B [Citrobacter koseri ATCC BAA-895]
gi|238055287|sp|A8ADV2|NUOB_CITK8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|157081987|gb|ABV11665.1| hypothetical protein CKO_00509 [Citrobacter koseri ATCC BAA-895]
Length = 224
Score = 204 bits (518), Expect = 6e-51, Method: Composition-based stats.
Identities = 76/173 (43%), Positives = 107/173 (61%), Gaps = 5/173 (2%)
Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
L+K + + EI G L ++ +V W R S+ FGL+CC VEM+
Sbjct: 14 NDRYPLQKQEIVTDPLEQEINKSVYMGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMV 73
Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
+ +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+C
Sbjct: 74 TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 185
>gi|256785904|ref|ZP_05524335.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24]
Length = 232
Score = 204 bits (518), Expect = 6e-51, Method: Composition-based stats.
Identities = 79/169 (46%), Positives = 105/169 (62%), Gaps = 1/169 (0%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
+ T + ++ W R SL FGLACCA+E + AS
Sbjct: 4 NPGEPADPAPVPLPEPKRLGTLARLAPEPMKVVLNWGRRYSLWVFNFGLACCAIEFIAAS 63
Query: 74 MPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
M R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YVIS G+C+N
Sbjct: 64 MARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNC 123
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI R
Sbjct: 124 GGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARES 172
>gi|332830189|gb|EGK02817.1| NADH-quinone oxidoreductase subunit B [Dysgonomonas gadei ATCC
BAA-286]
Length = 183
Score = 204 bits (518), Expect = 6e-51, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
T GF T D ++ AR SL + F +CC +E M YD+ RFG
Sbjct: 11 PAPDGYTGHGFFATKFDYVIGLARANSLWPLPFATSCCGIEFMATMASTYDMGRFGAERN 70
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
SPRQ+D+++V GT++ KMA LR VY+QM EP++VI++G+CA+ GG + +YSV++G
Sbjct: 71 SFSPRQADMLLVMGTISKKMAPILRHVYEQMAEPKWVIAVGACASSGGIF-DTYSVLQGI 129
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVD+YVPGCPP E ++ G++ LQ+ ++ +
Sbjct: 130 DKVIPVDVYVPGCPPRPEQILDGVMQLQELVKHESIHR 167
>gi|220910063|ref|YP_002485374.1| NADH dehydrogenase subunit B [Cyanothece sp. PCC 7425]
gi|238065001|sp|B8HLE8|NDHK2_CYAP4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName:
Full=NAD(P)H dehydrogenase I subunit K 2; AltName:
Full=NDH-1 subunit K 2; Short=NDH-K 2
gi|219866674|gb|ACL47013.1| NADH-quinone oxidoreductase, B subunit [Cyanothece sp. PCC 7425]
Length = 259
Score = 204 bits (518), Expect = 7e-51, Method: Composition-based stats.
Identities = 70/155 (45%), Positives = 105/155 (67%), Gaps = 2/155 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ E++ ++TS+D + WAR S+ + +G ACC +E R+D+ERFG PR
Sbjct: 17 EVPPELSE-NIILTSLDDIYNWARISSIYPLMYGTACCFIEFAAMIASRFDMERFGMFPR 75
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
ASPRQ+D++I+AGTLT +MA RR+YDQMPEP+YVI+MG+C GG + S + +RG
Sbjct: 76 ASPRQADLIILAGTLTMQMAVPTRRLYDQMPEPKYVIAMGACMITGGMFSADSPTALRGA 135
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
D+++P+D+Y+PGCPP EA++ + L+KKI
Sbjct: 136 DKLLPIDVYIPGCPPRPEAILDAVTKLRKKIANES 170
>gi|238062212|ref|ZP_04606921.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC
39149]
gi|237884023|gb|EEP72851.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC
39149]
Length = 225
Score = 204 bits (518), Expect = 7e-51, Method: Composition-based stats.
Identities = 83/151 (54%), Positives = 110/151 (72%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+TSV++LV W+R S+ TFGLACCA+EMM A P YD+ R+G RAS
Sbjct: 4 EEKLPAGVLLTSVEKLVNWSRKSSVWGATFGLACCAIEMMAAGGPHYDMGRWGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EPR+V+SMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPRWVLSMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E LI IL L++KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLREKIMYE 153
>gi|288917184|ref|ZP_06411553.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EUN1f]
gi|288351375|gb|EFC85583.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EUN1f]
Length = 264
Score = 204 bits (518), Expect = 7e-51, Method: Composition-based stats.
Identities = 81/148 (54%), Positives = 107/148 (72%), Gaps = 2/148 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+T+V+ L W+R SL TFGLACCA+EMM RYDL RFG RAS
Sbjct: 4 EEKLPGGVLLTTVEMLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
VPVD+Y+PGCPP E L+ I+ L +KI
Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIIKLHEKI 150
>gi|225563447|gb|EEH11726.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
Length = 240
Score = 204 bits (518), Expect = 7e-51, Method: Composition-based stats.
Identities = 98/181 (54%), Positives = 126/181 (69%), Gaps = 3/181 (1%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
T + + +E+ + + G + +D + WAR GSL ++ GLAC
Sbjct: 57 TPRENTANVPDVARIEQNASLLPSQDEKTGAMGHFL--IDAVTNWARQGSLWPVSLGLAC 114
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
C VEMM SMPRYD +R G RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++VI
Sbjct: 115 CGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVI 174
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK-IRRVGNV 183
SMGSCANGGGYYHYSYSVVRG DR++PVD+++PGCPPTAEAL+Y + +L+KK I
Sbjct: 175 SMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPTAEALLYAMAVLRKKSISNTKIT 234
Query: 184 K 184
+
Sbjct: 235 R 235
>gi|283953809|ref|ZP_06371340.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
jejuni 414]
gi|283794850|gb|EFC33588.1| NADH-quinone oxidoreductase, B subunit [Campylobacter jejuni subsp.
jejuni 414]
Length = 167
Score = 204 bits (518), Expect = 7e-51, Method: Composition-based stats.
Identities = 83/147 (56%), Positives = 111/147 (75%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI
Sbjct: 14 VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTL K A RR+YDQMP+P++V+SMGSCAN GG ++ +YS V+G DRI+PVDIYVP
Sbjct: 74 IAGTLCKKHAEFTRRLYDQMPDPKWVVSMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E+ + +++LQKKIR+ +
Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159
>gi|152971215|ref|YP_001336324.1| NADH dehydrogenase subunit B [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206576675|ref|YP_002237325.1| NADH-quinone oxidoreductase, B subunit [Klebsiella pneumoniae 342]
gi|238895804|ref|YP_002920540.1| NADH dehydrogenase subunit B [Klebsiella pneumoniae NTUH-K2044]
gi|262043327|ref|ZP_06016456.1| NADH dehydrogenase I subunit B [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288934255|ref|YP_003438314.1| NADH-quinone oxidoreductase subunit beta [Klebsiella variicola
At-22]
gi|290508458|ref|ZP_06547829.1| NADH dehydrogenase I subunit B [Klebsiella sp. 1_1_55]
gi|311278756|ref|YP_003940987.1| NADH-quinone oxidoreductase, B subunit [Enterobacter cloacae SCF1]
gi|330003557|ref|ZP_08304672.1| NADH dehydrogenase I subunit B [Klebsiella sp. MS 92-3]
gi|238065162|sp|B5XNV5|NUOB_KLEP3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065163|sp|A6TBX3|NUOB_KLEP7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|150956064|gb|ABR78094.1| NADH dehydrogenase beta subunit [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206565733|gb|ACI07509.1| NADH-quinone oxidoreductase, B subunit [Klebsiella pneumoniae 342]
gi|238548122|dbj|BAH64473.1| NADH dehydrogenase beta subunit [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259039351|gb|EEW40493.1| NADH dehydrogenase I subunit B [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288888984|gb|ADC57302.1| NADH-quinone oxidoreductase, B subunit [Klebsiella variicola At-22]
gi|289777852|gb|EFD85849.1| NADH dehydrogenase I subunit B [Klebsiella sp. 1_1_55]
gi|308747951|gb|ADO47703.1| NADH-quinone oxidoreductase, B subunit [Enterobacter cloacae SCF1]
gi|328536897|gb|EGF63196.1| NADH dehydrogenase I subunit B [Klebsiella sp. MS 92-3]
Length = 224
Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats.
Identities = 75/173 (43%), Positives = 107/173 (61%), Gaps = 5/173 (2%)
Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
L+K + + E+ G L ++ +V W R S+ FGL+CC VEM+
Sbjct: 14 NDRYPLQKQEIVTDPLEQEVNKSVYMGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMV 73
Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
+ +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+C
Sbjct: 74 TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 185
>gi|313895909|ref|ZP_07829463.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sp. oral taxon
137 str. F0430]
gi|312975334|gb|EFR40795.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sp. oral taxon
137 str. F0430]
Length = 178
Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats.
Identities = 79/153 (51%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
E V +DQL WA S+ ++ GLACCA+EMM + R+DL RFG+ R P
Sbjct: 9 ESLRHNVFVVKIDQLFRWAHASSIWPLSSGLACCAIEMMSTATARFDLARFGYEVFRPCP 68
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D++IVAGTLT KMA + R+Y+QMPEP+YVI+MG+C GG + SYSVV G D I+
Sbjct: 69 RQADLLIVAGTLTWKMAEPIVRLYEQMPEPKYVIAMGACTIAGGPFADSYSVVPGIDDIL 128
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
PVD+Y+PGCPP EAL+ G+L L++KI V
Sbjct: 129 PVDVYIPGCPPRPEALMDGMLKLREKILHPERV 161
>gi|158339661|ref|YP_001520668.1| NADH dehydrogenase subunit B [Acaryochloris marina MBIC11017]
gi|218527877|sp|A8ZK18|NDHK2_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit K 2; AltName:
Full=NAD(P)H dehydrogenase I subunit K 2; AltName:
Full=NDH-1 subunit K 2; Short=NDH-K 2
gi|158309902|gb|ABW31518.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain B,
putative [Acaryochloris marina MBIC11017]
Length = 209
Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats.
Identities = 74/155 (47%), Positives = 106/155 (68%), Gaps = 2/155 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
++ E++ ++T++D L W + SL FG ACC +E M A R+D+ERFG PR
Sbjct: 18 EVTQELSD-NVILTALDDLYDWVKMSSLYPFMFGTACCFMEFMGAYASRFDMERFGMIPR 76
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSYSVVRGC 146
A+PRQ+D++I AGT+T K A AL R+Y+QMPEP+YV++MG+C GG + S S VRG
Sbjct: 77 ATPRQADLLITAGTITMKYAPALVRLYEQMPEPKYVMAMGACTITGGMFSADSPSAVRGV 136
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
D+++PVD+Y+PGCPP AEA++ I L+KKI
Sbjct: 137 DKLIPVDVYIPGCPPRAEAVLDAITKLRKKIANES 171
>gi|322831985|ref|YP_004212012.1| NADH-quinone oxidoreductase, B subunit [Rahnella sp. Y9602]
gi|321167186|gb|ADW72885.1| NADH-quinone oxidoreductase, B subunit [Rahnella sp. Y9602]
Length = 224
Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats.
Identities = 78/169 (46%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
S E V G L S+ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQSQEVVGDPLQEQVKRSVFMGNLQESLHGMVNWGRKNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|157371544|ref|YP_001479533.1| NADH dehydrogenase subunit B [Serratia proteamaculans 568]
gi|238065214|sp|A8GH15|NUOB_SERP5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|157323308|gb|ABV42405.1| NADH-quinone oxidoreductase, B subunit [Serratia proteamaculans
568]
Length = 224
Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats.
Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R S+ FGL+CC VEM+ +
Sbjct: 18 PLQKQEVVADPLDQQVHRTVYMGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D+M+VAGT KMA ++R+Y+QM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 185
>gi|289641426|ref|ZP_06473590.1| NADH-quinone oxidoreductase, B subunit [Frankia symbiont of Datisca
glomerata]
gi|289508762|gb|EFD29697.1| NADH-quinone oxidoreductase, B subunit [Frankia symbiont of Datisca
glomerata]
Length = 267
Score = 203 bits (517), Expect = 8e-51, Method: Composition-based stats.
Identities = 81/148 (54%), Positives = 108/148 (72%), Gaps = 2/148 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+T+V+++ W+R SL TFGLACCA+EMM RYDL RFG RAS
Sbjct: 4 EEKLPGGLLLTTVEKMANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLARFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
VPVD+Y+PGCPP E L+ IL L +KI
Sbjct: 123 VPVDMYLPGCPPRPEMLMDAILKLHEKI 150
>gi|33519943|ref|NP_878775.1| NADH dehydrogenase subunit B [Candidatus Blochmannia floridanus]
gi|81666912|sp|Q7VRV3|NUOB_BLOFL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|33504289|emb|CAD83181.1| NADH dehydrogenase I chain B [Candidatus Blochmannia floridanus]
Length = 223
Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats.
Identities = 81/181 (44%), Positives = 106/181 (58%), Gaps = 2/181 (1%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
L NQ S + V + + + G L + + V W R+ SL FGL
Sbjct: 7 LARTNQDDDSVYPEQDQKPVADPLDKQIEKNVYFGKLKNLLHKAVNWGRSNSLWPYNFGL 66
Query: 63 ACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
+CC VEM A +D+ RFG R+SPRQSD M++AGT KM ++R+YDQM EP+
Sbjct: 67 SCCYVEMTTAFTAVHDVARFGSEVLRSSPRQSDFMVIAGTPFLKMVPIIQRLYDQMLEPK 126
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+VISMGSCAN GG Y YSVV+G D+ +PVDIY+PGCPP EA I +LLL+K I +
Sbjct: 127 WVISMGSCANSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYIQALLLLKKSINKER 185
Query: 182 N 182
Sbjct: 186 R 186
>gi|325093407|gb|EGC46717.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
Length = 240
Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats.
Identities = 98/181 (54%), Positives = 126/181 (69%), Gaps = 3/181 (1%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
T + + +E+ + + G + +D + WAR GSL ++ GLAC
Sbjct: 57 TARENTANVPDVARIERNASLLPSQDEKTGAMGHFL--IDAVTNWARQGSLWPVSLGLAC 114
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
C VEMM SMPRYD +R G RASPRQSD++IVAGT+TNKMA ALR VYDQMP+P++VI
Sbjct: 115 CGVEMMAVSMPRYDQDRLGTIFRASPRQSDLLIVAGTVTNKMAPALRLVYDQMPDPKWVI 174
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK-IRRVGNV 183
SMGSCANGGGYYHYSYSVVRG DR++PVD+++PGCPPTAEAL+Y + +L+KK I
Sbjct: 175 SMGSCANGGGYYHYSYSVVRGVDRLLPVDLFLPGCPPTAEALLYAMAVLRKKSISNTKIT 234
Query: 184 K 184
+
Sbjct: 235 R 235
>gi|254283162|ref|ZP_04958130.1| NADH dehydrogenase i, b subunit [gamma proteobacterium NOR51-B]
gi|219679365|gb|EED35714.1| NADH dehydrogenase i, b subunit [gamma proteobacterium NOR51-B]
Length = 214
Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats.
Identities = 75/181 (41%), Positives = 110/181 (60%), Gaps = 11/181 (6%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
LT I + + S++ E + + ++ L+ W R SL FGL
Sbjct: 5 LTRPEDTIATSPGTASVDMA---------EQIRRNVMFARLEDLIAWGRAHSLWPFNFGL 55
Query: 63 ACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
+CC VEM + R+D+ RFG RA+PRQ+D+M+++GT+ KMA ++ +YDQ+ EPR
Sbjct: 56 SCCYVEMATSFTSRHDIARFGSEVIRATPRQADLMVISGTVFRKMAPVVQHLYDQLLEPR 115
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
++ISMGSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EAL+ G+++LQ I +
Sbjct: 116 WIISMGSCANSGGMY-DIYSVVQGVDKFIPVDVYVPGCPPRPEALMQGLMMLQDAIGKER 174
Query: 182 N 182
Sbjct: 175 R 175
>gi|310768164|gb|ADP13114.1| NADH dehydrogenase subunit B [Erwinia sp. Ejp617]
Length = 224
Score = 203 bits (517), Expect = 9e-51, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + + G L ++ +V W R SL FGL+CC VEM +
Sbjct: 18 PLQKQEIVTDPLEKHVHQNVYMGKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFT 77
Query: 75 PRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|170721056|ref|YP_001748744.1| NADH dehydrogenase subunit B [Pseudomonas putida W619]
gi|238065198|sp|B1J6N3|NUOB_PSEPW RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|169759059|gb|ACA72375.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida W619]
Length = 225
Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 107/176 (60%), Gaps = 6/176 (3%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
+ + + + ++ + HK + ++ + V W R SL FGL+CC V
Sbjct: 12 APNEQYPVGERETVTDQLLEDQVHKNIYMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYV 71
Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM
Sbjct: 72 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 131
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I +
Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERR 186
>gi|104782522|ref|YP_609020.1| NADH dehydrogenase subunit B [Pseudomonas entomophila L48]
gi|167034688|ref|YP_001669919.1| NADH dehydrogenase subunit B [Pseudomonas putida GB-1]
gi|122402719|sp|Q1I7Z9|NUOB_PSEE4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065197|sp|B0KMX9|NUOB_PSEPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|95111509|emb|CAK16229.1| NADH dehydrogenase I chain B [Pseudomonas entomophila L48]
gi|166861176|gb|ABY99583.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas putida GB-1]
Length = 225
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 107/176 (60%), Gaps = 6/176 (3%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
+ + + + ++ + HK + ++ + V W R SL FGL+CC V
Sbjct: 12 APNEQYPVGERETVTDQLLEDQVHKNIYMGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYV 71
Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM
Sbjct: 72 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISM 131
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I +
Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERR 186
>gi|300723691|ref|YP_003712998.1| NADH dehydrogenase I subunit B [Xenorhabdus nematophila ATCC 19061]
gi|297630215|emb|CBJ90866.1| NADH dehydrogenase I chain B [Xenorhabdus nematophila ATCC 19061]
Length = 224
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 74/169 (43%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQKQEIVSDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+++GT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVISGTCFVKMAPVIQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|270262813|ref|ZP_06191084.1| NADH-quinone oxidoreductase subunit B [Serratia odorifera 4Rx13]
gi|270043497|gb|EFA16590.1| NADH-quinone oxidoreductase subunit B [Serratia odorifera 4Rx13]
Length = 224
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R S+ FGL+CC VEM+ +
Sbjct: 18 PLQKQEIVADPLDQQVHRTVYMGKLEHALHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D+M+VAGT KMA ++R+Y+QM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 185
>gi|37526976|ref|NP_930320.1| NADH dehydrogenase subunit B [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81572443|sp|Q7N2I8|NUOB_PHOLL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|36786409|emb|CAE15462.1| NADH dehydrogenase I chain B (NADH-ubiquinone oxidoreductase chain
2) (NUO2) [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 224
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R SL FGL+CC VEM +
Sbjct: 18 PLQKQEIVADPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMATSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|300771676|ref|ZP_07081551.1| NADH-quinone oxidoreductase subunit B [Sphingobacterium
spiritivorum ATCC 33861]
gi|300761665|gb|EFK58486.1| NADH-quinone oxidoreductase subunit B [Sphingobacterium
spiritivorum ATCC 33861]
Length = 184
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 101/157 (64%), Gaps = 2/157 (1%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
+ + GF T++D+ + AR SL + F +CC +E M YDL RFG
Sbjct: 6 LAEAPPGVEGSGFFATTLDKAIGLARANSLWPLPFATSCCGIEFMATMGSTYDLARFGAE 65
Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
P SPRQ+D+++V GT+ KMA L++VY QM EPR+VI++G+CA+ GG + +YSV++
Sbjct: 66 RPSFSPRQADMLLVMGTIAKKMAPVLKQVYVQMAEPRWVIAVGACASSGGIF-DTYSVLQ 124
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
G D I+PVD+YVPGCPP EA++ G+L LQ+ ++
Sbjct: 125 GIDEIIPVDVYVPGCPPRPEAILDGVLRLQEIVKNES 161
>gi|292488843|ref|YP_003531730.1| NADH dehydrogenase I subunit B [Erwinia amylovora CFBP1430]
gi|292899993|ref|YP_003539362.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC 49946]
gi|291199841|emb|CBJ46965.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC 49946]
gi|291554277|emb|CBA21599.1| NADH dehydrogenase I chain B [Erwinia amylovora CFBP1430]
gi|312173002|emb|CBX81257.1| NADH dehydrogenase I chain B [Erwinia amylovora ATCC BAA-2158]
Length = 224
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + + G L ++ +V W R SL FGL+CC VEM +
Sbjct: 18 PLHKQEIVTDPLEKHVHQNVYMGKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFT 77
Query: 75 PRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|268317701|ref|YP_003291420.1| NADH-quinone oxidoreductase, B subunit [Rhodothermus marinus DSM
4252]
gi|262335235|gb|ACY49032.1| NADH-quinone oxidoreductase, B subunit [Rhodothermus marinus DSM
4252]
Length = 194
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 80/150 (53%), Positives = 111/150 (74%), Gaps = 2/150 (1%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQS 93
+GFL T +D L+ WAR+ SLM M GLACCA+EMM + P+YD+ RFG R SPRQ+
Sbjct: 5 REGFLTTRLDVLLNWARSNSLMPMPMGLACCAIEMMAFAGPKYDVARFGSEAMRFSPRQA 64
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
D+MIVAG + KMA A+RRV+DQMP+P++ I+MG+CA+ GG H Y VV+G D +PVD
Sbjct: 65 DLMIVAGWCSYKMAHAIRRVWDQMPDPKWCIAMGACASTGGM-HRCYGVVQGVDNFLPVD 123
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+Y+PGCPP EA+++ ++ +Q+KIR +V
Sbjct: 124 VYIPGCPPRPEAVLHALMDIQEKIRNEYSV 153
>gi|297563968|ref|YP_003682941.1| NADH-quinone oxidoreductase, B subunit [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296848417|gb|ADH70435.1| NADH-quinone oxidoreductase, B subunit [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 181
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 75/152 (49%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-S 89
E G ++T+V+Q+V AR S+ TFGLACCA+EMM P YDL RFG +
Sbjct: 4 EEKLPSGIMLTTVEQVVGLARKSSMWPATFGLACCAIEMMSVGGPHYDLARFGMEKFGAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQMPEP++VI+MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVIAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVD+Y+PGCPP E L+ +L L K++
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAVLKLHDKVQNTK 154
>gi|290958206|ref|YP_003489388.1| NADH dehydrogenase subunit NuoB2 [Streptomyces scabiei 87.22]
gi|260647732|emb|CBG70837.1| NADH dehydrogenase subunit NuoB2 [Streptomyces scabiei 87.22]
Length = 226
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 82/183 (44%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 1 MGLTT-VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
M +T N + L ++ + ++ W R SL
Sbjct: 1 MDVTPETNPSQAADAPGPVLLPEPKRLGALARLAPE------PMKVILNWGRRYSLWVFN 54
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMP
Sbjct: 55 FGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMP 114
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
EP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI
Sbjct: 115 EPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIA 174
Query: 179 RVG 181
R
Sbjct: 175 RES 177
>gi|72163093|ref|YP_290750.1| NADH dehydrogenase subunit B [Thermobifida fusca YX]
gi|123628754|sp|Q47LE5|NUOB_THEFY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|71916825|gb|AAZ56727.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermobifida fusca
YX]
Length = 185
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 78/152 (51%), Positives = 107/152 (70%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+T+V+Q+V + R S+ TFGLACCA+EMM A PR+D+ RFG A+
Sbjct: 4 EEKLPSGVLLTTVEQIVGFVRKTSMWPATFGLACCAIEMMAAGGPRFDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR +YDQM EP++VI+MG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRTIYDQMAEPKWVIAMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E L+ IL L K++
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHDKVQNTK 154
>gi|259907928|ref|YP_002648284.1| NADH dehydrogenase subunit B [Erwinia pyrifoliae Ep1/96]
gi|224963550|emb|CAX55040.1| NADH dehydrogenase I chain B [Erwinia pyrifoliae Ep1/96]
gi|283477809|emb|CAY73725.1| NADH dehydrogenase I chain B [Erwinia pyrifoliae DSM 12163]
Length = 224
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + + G L ++ +V W R SL FGL+CC VEM +
Sbjct: 18 PLQKQEIVTDPLEKHVHQNVYMGKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFT 77
Query: 75 PRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|222479140|ref|YP_002565377.1| NADH-quinone oxidoreductase, B subunit [Halorubrum lacusprofundi
ATCC 49239]
gi|222452042|gb|ACM56307.1| NADH-quinone oxidoreductase, B subunit [Halorubrum lacusprofundi
ATCC 49239]
Length = 232
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 76/178 (42%), Positives = 117/178 (65%), Gaps = 1/178 (0%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+T +Q + + S + D SR+ F++T D+ + W R S+ + FG+
Sbjct: 8 ITDESQVVTETRDSRMTGQGDRFNSRLREAFGSSPFILTKFDKFLNWCRGSSMFMLQFGI 67
Query: 63 ACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
ACC++EMM ++DL+RFG PRASPRQ+DVMIV GT+ +K A ++RVYDQMPEP+
Sbjct: 68 ACCSIEMMHTYAVKHDLDRFGSGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQMPEPK 127
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+V+ MGSC GG + Y+V++G + ++P+DI+VPGCPP EAL+YG++ LQ+++
Sbjct: 128 FVVGMGSCTISGGPFQEGYNVIKGAEEVIPIDIHVPGCPPRPEALVYGVVKLQERVAN 185
>gi|227535970|ref|ZP_03966019.1| NADH dehydrogenase I, chain B [Sphingobacterium spiritivorum ATCC
33300]
gi|227244213|gb|EEI94228.1| NADH dehydrogenase I, chain B [Sphingobacterium spiritivorum ATCC
33300]
Length = 184
Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 101/157 (64%), Gaps = 2/157 (1%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
+ + GF T++D+ + AR SL + F +CC +E M YDL RFG
Sbjct: 6 LAEAPPGVEGSGFFATTLDKAIGLARANSLWPLPFATSCCGIEFMATMGSTYDLARFGAE 65
Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
P SPRQ+D+++V GT+ KMA L++VY QM EPR+VI++G+CA+ GG + +YSV++
Sbjct: 66 RPSFSPRQADMLLVMGTIAKKMAPVLKQVYVQMAEPRWVIAVGACASSGGIF-DTYSVLQ 124
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
G D I+PVD+YVPGCPP EA++ G+L LQ+ ++
Sbjct: 125 GIDEIIPVDVYVPGCPPRPEAILDGVLRLQEIVKNES 161
>gi|298244920|ref|ZP_06968726.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM
44963]
gi|297552401|gb|EFH86266.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM
44963]
Length = 201
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 81/148 (54%), Positives = 109/148 (73%), Gaps = 6/148 (4%)
Query: 40 VTSVDQLV----TWARTGSLMWMTFGLACCAVEM-MQASMPRYDLERFGFA-PRASPRQS 93
+TS+ ++ WAR+ S+ + +GLACCA+EM AS P+YDL RFG R+SPRQ+
Sbjct: 43 LTSLADMLQWAQNWARSKSVWPLGYGLACCAIEMIASASAPQYDLSRFGSEVFRSSPRQA 102
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
D+MIVAGT++ KM LR +Y+QMPEP++VISMG CAN GG ++ SY V+G D IVPVD
Sbjct: 103 DLMIVAGTVSIKMGPRLRLLYEQMPEPKWVISMGQCANSGGEFYDSYYTVQGVDTIVPVD 162
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVG 181
+Y+PGCPP EALI G+L L++KI + G
Sbjct: 163 VYIPGCPPRPEALIEGLLKLREKIAKQG 190
>gi|297616443|ref|YP_003701602.1| NADH-quinone oxidoreductase subunit beta [Syntrophothermus
lipocalidus DSM 12680]
gi|297144280|gb|ADI01037.1| NADH-quinone oxidoreductase, B subunit [Syntrophothermus
lipocalidus DSM 12680]
Length = 160
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 102/144 (70%), Gaps = 1/144 (0%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
+VT+++++ W R+ S +T+G CC +EMM A R+D+ R+G+ RASPRQ+D+
Sbjct: 8 NIIVTTLEKIWNWGRSRSFWPLTYGCNCCPIEMMAAGAARFDIARYGYEVFRASPRQADL 67
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
+IVAG +T KM + RV+ QMPEP++V++MG+CA GG + YSV+ GCD +PVD+Y
Sbjct: 68 LIVAGPVTLKMKPVVERVWAQMPEPKWVLAMGNCATSGGPFKDGYSVLPGCDSFLPVDVY 127
Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
VPGCPP EAL +G+L L+KK+
Sbjct: 128 VPGCPPRPEALFHGLLELKKKVES 151
>gi|55378230|ref|YP_136080.1| NADH dehydrogenase I B subunit [Haloarcula marismortui ATCC 43049]
gi|55230955|gb|AAV46374.1| NADH dehydrogenase I B subunit [Haloarcula marismortui ATCC 43049]
Length = 230
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 77/178 (43%), Positives = 116/178 (65%), Gaps = 2/178 (1%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSR-ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
T + +S Q + + D F+ + F++T D+ + W R S+ + FG+
Sbjct: 6 TPPAVEDVSTQEARMGDGADDRFNSTLREAFGSTPFILTKFDKFMNWVRGSSMFMLQFGI 65
Query: 63 ACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
ACC++EM+ ++DL+RFG PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP+
Sbjct: 66 ACCSIEMIHTYAIKHDLDRFGSGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPK 125
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+V+SMGSC GG + Y+V++G + ++PVDI+VPGCPP EALIYG+ LQ++I
Sbjct: 126 FVVSMGSCTISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGVAKLQERIAE 183
>gi|289769797|ref|ZP_06529175.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24]
gi|289699996|gb|EFD67425.1| NADH dehydrogenase subunit NuoB2 [Streptomyces lividans TK24]
Length = 219
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 78/137 (56%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+
Sbjct: 23 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 82
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 83 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 142
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GIL LQ+KI R
Sbjct: 143 ALLQGILKLQEKIARES 159
>gi|317123870|ref|YP_004097982.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043]
gi|315587958|gb|ADU47255.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043]
Length = 221
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 78/143 (54%), Positives = 102/143 (71%), Gaps = 1/143 (0%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIV 98
+ L+ W R SL FGLACCA+E + SM R+D R G P PRQ+D+MIV
Sbjct: 27 PKPIKVLLNWGRRYSLWVFNFGLACCAIEFIATSMARHDFMRLGVIPFAPGPRQADLMIV 86
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
+GT+T+KMA A+RR+YDQMPEP+YVIS G+CAN GG Y SYSV +G D ++PVD+YVPG
Sbjct: 87 SGTVTDKMAPAIRRLYDQMPEPKYVISFGACANSGGPYWDSYSVTKGVDTVIPVDVYVPG 146
Query: 159 CPPTAEALIYGILLLQKKIRRVG 181
CPP EAL++GI+ LQ++I +
Sbjct: 147 CPPRPEALLHGIIRLQEQIAQER 169
>gi|302553480|ref|ZP_07305822.1| NADH dehydrogenase subunit I B [Streptomyces viridochromogenes DSM
40736]
gi|302471098|gb|EFL34191.1| NADH dehydrogenase subunit I B [Streptomyces viridochromogenes DSM
40736]
Length = 206
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 78/137 (56%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+
Sbjct: 30 ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 89
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 90 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 149
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GIL LQ+KI R
Sbjct: 150 ALLQGILKLQEKIARES 166
>gi|110667597|ref|YP_657408.1| NADH dehydrogenase, subunit B (ubiquinone) [Haloquadratum walsbyi
DSM 16790]
gi|109625344|emb|CAJ51766.1| NADH dehydrogenase, subunit B (ubiquinone) [Haloquadratum walsbyi
DSM 16790]
Length = 234
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 75/178 (42%), Positives = 113/178 (63%), Gaps = 1/178 (0%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+T Q + + + S++ F++T DQ + W R S+ + FG+
Sbjct: 10 VTDDTQVQTDTRDARISGTDERFNSKLREAFGSSPFILTKFDQFMNWVRGSSMFMLQFGI 69
Query: 63 ACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
ACC++EMM ++DL+RFG PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP+
Sbjct: 70 ACCSIEMMHTYAVKHDLDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPK 129
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+V+ MGSC GG + Y+V++G + ++PVDI++PGCPP EAL+YGI LQ++I
Sbjct: 130 FVVGMGSCTVSGGPFQEGYNVIKGAEEVIPVDIHIPGCPPRPEALVYGIAKLQERISN 187
>gi|297201676|ref|ZP_06919073.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sviceus ATCC 29083]
gi|297147941|gb|EDY54985.2| NADH dehydrogenase subunit NuoB2 [Streptomyces sviceus ATCC 29083]
Length = 234
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 78/137 (56%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+
Sbjct: 45 ILNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 104
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 105 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 164
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GIL LQ+KI R
Sbjct: 165 ALLQGILKLQEKIARES 181
>gi|317492622|ref|ZP_07951049.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919372|gb|EFV40704.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 224
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQKQEIVTDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMGSCAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGSCANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 185
>gi|320540451|ref|ZP_08040101.1| putative NADH:ubiquinone oxidoreductase, chain B [Serratia
symbiotica str. Tucson]
gi|320029382|gb|EFW11411.1| putative NADH:ubiquinone oxidoreductase, chain B [Serratia
symbiotica str. Tucson]
Length = 224
Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats.
Identities = 74/169 (43%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L +V +V W R S+ FGL+CC VEM+ +
Sbjct: 18 PLQKQEIVADPLEQQVHRTVYMGKLEHAVHDMVNWGRKNSIWPYNFGLSCCYVEMVNSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D+M+VAGT KMA ++R+Y+QM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 185
>gi|239929613|ref|ZP_04686566.1| NADH dehydrogenase subunit B [Streptomyces ghanaensis ATCC 14672]
gi|291437937|ref|ZP_06577327.1| NuoB [Streptomyces ghanaensis ATCC 14672]
gi|291340832|gb|EFE67788.1| NuoB [Streptomyces ghanaensis ATCC 14672]
Length = 184
Score = 202 bits (515), Expect = 2e-50, Method: Composition-based stats.
Identities = 82/152 (53%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQNSK 154
>gi|296268308|ref|YP_003650940.1| NADH-quinone oxidoreductase subunit B [Thermobispora bispora DSM
43833]
gi|296091095|gb|ADG87047.1| NADH-quinone oxidoreductase, B subunit [Thermobispora bispora DSM
43833]
Length = 170
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 78/137 (56%), Positives = 104/137 (75%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + SM R+D RFG P A+ PRQ+D+MIV+GT+T+
Sbjct: 23 VLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFIRFGVIPFANGPRQADLMIVSGTVTD 82
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMP+P+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 83 KMAPAVKRLYEQMPDPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 142
Query: 165 ALIYGILLLQKKIRRVG 181
AL++GIL LQ+KI
Sbjct: 143 ALLHGILKLQEKIAGES 159
>gi|116749375|ref|YP_846062.1| trifunctional NADH dehydrogenase I subunit B/C/D [Syntrophobacter
fumaroxidans MPOB]
gi|218534237|sp|A0LJM5|NUBCD_SYNFM RecName: Full=NADH-quinone oxidoreductase subunit B/C/D; AltName:
Full=NADH dehydrogenase I subunit B/C/D; AltName:
Full=NDH-1 subunit B/C/D
gi|116698439|gb|ABK17627.1| NADH dehydrogenase I, D subunit [Syntrophobacter fumaroxidans MPOB]
Length = 787
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 103/145 (71%), Gaps = 2/145 (1%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
+++ D ++ W+R SL + FGL+CC VE A PRYD+ RFG R SPRQ+D++I
Sbjct: 5 FLSAADFVLNWSRKYSLWPLFFGLSCCFVEEATAFTPRYDMARFGAEVLRPSPRQADLLI 64
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
V+GT+ K+A + R+Y+QM EP++VISMGSC+N GG Y YSVV+G D+I+PVD+Y+P
Sbjct: 65 VSGTVFKKIAPVVLRLYEQMAEPKWVISMGSCSNCGGMY-DVYSVVQGIDQILPVDVYIP 123
Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
GCPP EA++ G+ LLQKKI
Sbjct: 124 GCPPRPEAVLQGLTLLQKKIAAEER 148
>gi|302833603|ref|XP_002948365.1| NADH:ubiquinone oxidoreductase subunit 10 [Volvox carteri f.
nagariensis]
gi|300266585|gb|EFJ50772.1| NADH:ubiquinone oxidoreductase subunit 10 [Volvox carteri f.
nagariensis]
Length = 164
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 108/148 (72%), Positives = 124/148 (83%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+V+ VD ++ WAR GS+ MTFGLACCAVEMM A RYDL+RFG R SPRQSD M
Sbjct: 12 EFVVSKVDNVINWARAGSIWPMTFGLACCAVEMMHAGASRYDLDRFGIIFRPSPRQSDCM 71
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEP++V+SMGSCANGGGYYHYSY+VVRGCDR+VPVD+YV
Sbjct: 72 IVAGTLTNKMAPALRKVYDQMPEPKWVVSMGSCANGGGYYHYSYAVVRGCDRVVPVDVYV 131
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184
PGCPPTAE L+YG+L LQKKI R +
Sbjct: 132 PGCPPTAEGLLYGLLQLQKKIYRSKTAQ 159
>gi|296103968|ref|YP_003614114.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295058427|gb|ADF63165.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295098074|emb|CBK87164.1| NADH dehydrogenase subunit B [Enterobacter cloacae subsp. cloacae
NCTC 9394]
Length = 224
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 75/173 (43%), Positives = 107/173 (61%), Gaps = 5/173 (2%)
Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
L+K + + E+ G L ++ +V W R S+ FGL+CC VEM+
Sbjct: 14 NDRYPLQKQEIVTDPLEQEVNKSVYMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMV 73
Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
+ +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+C
Sbjct: 74 TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 185
>gi|15597834|ref|NP_251328.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PAO1]
gi|107102158|ref|ZP_01366076.1| hypothetical protein PaerPA_01003208 [Pseudomonas aeruginosa PACS2]
gi|116050625|ref|YP_790556.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa UCBPP-PA14]
gi|218891201|ref|YP_002440067.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa LESB58]
gi|254235623|ref|ZP_04928946.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa C3719]
gi|254241070|ref|ZP_04934392.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 2192]
gi|296388901|ref|ZP_06878376.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PAb1]
gi|313107676|ref|ZP_07793858.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 39016]
gi|81622300|sp|Q9I0K0|NUOB_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|122259748|sp|Q02ND0|NUOB_PSEAB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065194|sp|B7VAR4|NUOB_PSEA8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|9948706|gb|AAG06026.1|AE004692_5 NADH dehydrogenase I chain B [Pseudomonas aeruginosa PAO1]
gi|115585846|gb|ABJ11861.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa UCBPP-PA14]
gi|126167554|gb|EAZ53065.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa C3719]
gi|126194448|gb|EAZ58511.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 2192]
gi|218771426|emb|CAW27193.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa LESB58]
gi|310880360|gb|EFQ38954.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa 39016]
Length = 225
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
LT ++ + Q + + + + HK + ++ + V W R SL
Sbjct: 5 LTRIDPDAANDQ--YPIGERETVADPLVEGQVHKNIFMGKLEDVLNSTVNWGRKNSLWPY 62
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM
Sbjct: 63 NFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQM 122
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + G++LLQ+ I
Sbjct: 123 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESI 181
Query: 178 RRVGN 182
+
Sbjct: 182 GQERR 186
>gi|86739252|ref|YP_479652.1| NADH dehydrogenase subunit B [Frankia sp. CcI3]
gi|123765293|sp|Q2JFL9|NUOB_FRASC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|86566114|gb|ABD09923.1| NADH dehydrogenase subunit B [Frankia sp. CcI3]
Length = 271
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 81/148 (54%), Positives = 107/148 (72%), Gaps = 2/148 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+ SV++L W+R SL TFGLACCA+EMM RYDL RFG RAS
Sbjct: 4 EEKLPGGVLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
VPVD+Y+PGCPP E L+ I+ L +KI
Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIIKLHEKI 150
>gi|152988699|ref|YP_001347933.1| NADH dehydrogenase subunit B [Pseudomonas aeruginosa PA7]
gi|238065193|sp|A6V4E8|NUOB_PSEA7 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|150963857|gb|ABR85882.1| NADH dehydrogenase I chain B [Pseudomonas aeruginosa PA7]
Length = 225
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 77/185 (41%), Positives = 110/185 (59%), Gaps = 8/185 (4%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
LT ++ + Q + + + + HK + ++ + V W R SL
Sbjct: 5 LTRIDPDAANDQ--YPIGERETVADPLVEGQVHKNIFMGKLEDVLNSTVNWGRKNSLWPY 62
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM
Sbjct: 63 NFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQM 122
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + G++LLQ+ I
Sbjct: 123 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESI 181
Query: 178 RRVGN 182
+
Sbjct: 182 GQERR 186
>gi|294814429|ref|ZP_06773072.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064]
gi|326442819|ref|ZP_08217553.1| putative NADH dehydrogenase chain B [Streptomyces clavuligerus ATCC
27064]
gi|294327028|gb|EFG08671.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064]
Length = 239
Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats.
Identities = 79/137 (57%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+
Sbjct: 56 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 115
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 116 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 175
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GIL LQ+KI R
Sbjct: 176 ALLQGILKLQEKIARES 192
>gi|294140414|ref|YP_003556392.1| NADH dehydrogenase I subunit B [Shewanella violacea DSS12]
gi|293326883|dbj|BAJ01614.1| NADH dehydrogenase I, B subunit [Shewanella violacea DSS12]
Length = 219
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 76/150 (50%), Positives = 107/150 (71%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRAS 89
E+ K LVT ++ LV W R+ SL FGL+CC VEM + R+D+ RFG RA+
Sbjct: 25 QEVVEKNLLVTRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 84
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PR++D+++++GT+ KMA ++ +YDQM EP++VISMGSCAN GG Y YSVV+G D+
Sbjct: 85 PREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVISMGSCANSGGMY-DVYSVVQGADKF 143
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+P+D+YVPGCPP EAL+YG+ LLQ+ I+
Sbjct: 144 LPIDLYVPGCPPRPEALMYGLTLLQEAIKN 173
>gi|83589827|ref|YP_429836.1| NADH dehydrogenase subunit B [Moorella thermoacetica ATCC 39073]
gi|123524686|sp|Q2RJU6|NUOB_MOOTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|83572741|gb|ABC19293.1| NADH dehydrogenase subunit B [Moorella thermoacetica ATCC 39073]
Length = 166
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 80/154 (51%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88
+ ++++VD ++ + R S +TFGLACCA+EMM A RYD+ RFG+ R
Sbjct: 9 ADPQIPDNIILSTVDAMLNYCRAHSFWPVTFGLACCAIEMMAAGGARYDIARFGYEVFRP 68
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPRQ+D+MIVAGT+T KMA +RR+Y+QMP P++VI+MGSCA GG + SY+VV G D
Sbjct: 69 SPRQADLMIVAGTVTRKMAPLVRRLYEQMPAPKWVIAMGSCAISGGPFVDSYNVVPGVDT 128
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
IVPVD+YVPGC P EALI G+L L+KK+
Sbjct: 129 IVPVDVYVPGCAPRPEALINGLLALKKKVINPKV 162
>gi|161527785|ref|YP_001581611.1| NADH-quinone oxidoreductase subunit B [Nitrosopumilus maritimus
SCM1]
gi|160339086|gb|ABX12173.1| NADH-quinone oxidoreductase, B subunit [Nitrosopumilus maritimus
SCM1]
Length = 174
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 76/147 (51%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97
+ + + W R SL + ACC+VE AS PRYD+ERFG S RQ D+++
Sbjct: 26 IDKPLGYAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLVV 85
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
V GT+T KMA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D ++PVD+YVP
Sbjct: 86 VQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVIPVDVYVP 145
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GCPP E LI G +LLQ+KI+R+ K
Sbjct: 146 GCPPRPETLIQGCILLQEKIKRMKARK 172
>gi|82702143|ref|YP_411709.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196]
gi|123544779|sp|Q2YAA4|NUOB1_NITMU RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|82410208|gb|ABB74317.1| NADH dehydrogenase subunit B [Nitrosospira multiformis ATCC 25196]
Length = 221
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 79/178 (44%), Positives = 104/178 (58%), Gaps = 5/178 (2%)
Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKG---FLVTSVDQLVTWARTGSLMWMTFGLACC 65
+ S + G L+T + LV W R S+ FGL+CC
Sbjct: 4 SLSKPSDKPSGPATPGSSIIRDNGFEEDGRRSVLLTRLQDLVAWGRKNSVWPYNFGLSCC 63
Query: 66 AVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
VEM + +YDL RFG RASPRQ+D+++++GT+ KMA L+R+YDQM EPR+VI
Sbjct: 64 YVEMATSFTSKYDLARFGSEVIRASPRQADLIVISGTVFIKMAPVLQRLYDQMLEPRWVI 123
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
SMGSCAN GG Y YSVV+G DR +PVD+YVPGCPP +A + G+ LLQ I +
Sbjct: 124 SMGSCANSGGMY-DIYSVVQGVDRFLPVDVYVPGCPPRPDAFMQGLNLLQDAIGKEKR 180
>gi|292655139|ref|YP_003535036.1| NADH dehydrogenase-like complex subunit B [Haloferax volcanii DS2]
gi|291372435|gb|ADE04662.1| NADH dehydrogenase-like complex subunit B [Haloferax volcanii DS2]
Length = 233
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 75/178 (42%), Positives = 112/178 (62%), Gaps = 1/178 (0%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+T Q + + D S++ F++T D+ + W R S+ + FG+
Sbjct: 9 VTDDTQVQTETRDARMAGADDRFNSKLREAFGSSPFILTKFDKFMNWVRGSSMFMLQFGI 68
Query: 63 ACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
ACC++EMM ++DL+RF PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP+
Sbjct: 69 ACCSIEMMHTYSVKHDLDRFAAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPK 128
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+V+ MGSC GG + Y+V++G + ++PVDI++PGCPP EALIYGI LQ++I
Sbjct: 129 FVVGMGSCTISGGPFQEGYNVIKGAEEVIPVDIHIPGCPPRPEALIYGIAKLQERIAN 186
>gi|254391175|ref|ZP_05006382.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064]
gi|197704869|gb|EDY50681.1| NADH dehydrogenase I chain B [Streptomyces clavuligerus ATCC 27064]
Length = 237
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 79/137 (57%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+MIV+GT+T+
Sbjct: 54 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTD 113
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 114 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 173
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GIL LQ+KI R
Sbjct: 174 ALLQGILKLQEKIARES 190
>gi|326329611|ref|ZP_08195933.1| NADH dehydrogenase I, B subunit [Nocardioidaceae bacterium Broad-1]
gi|325952607|gb|EGD44625.1| NADH dehydrogenase I, B subunit [Nocardioidaceae bacterium Broad-1]
Length = 184
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 80/150 (53%), Positives = 108/150 (72%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+T+V+ L + R SL TFGLACCA+EMM + P+YDL R+G RAS
Sbjct: 4 EEKLPSGVLLTTVEGLAGYFRKASLWPATFGLACCAIEMMTSGGPKYDLARYGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V++MG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVD+Y+PGCPP E LI IL L KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHDKIQH 152
>gi|297159540|gb|ADI09252.1| NADH dehydrogenase subunit NuoB2 [Streptomyces bingchenggensis
BCW-1]
Length = 214
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 79/172 (45%), Positives = 109/172 (63%), Gaps = 1/172 (0%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
++ + + D T + ++ W R SL FGLACCA+E +
Sbjct: 3 VTPNPAPTPASTPVDLPEPRRLGTLARLAPEPMKVVLNWGRRYSLWVFNFGLACCAIEFI 62
Query: 71 QASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YVIS G+C
Sbjct: 63 AASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVISFGAC 122
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+N GG Y SY+V +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI R
Sbjct: 123 SNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARES 174
>gi|300717650|ref|YP_003742453.1| NADH dehydrogenase I chain B [Erwinia billingiae Eb661]
gi|299063486|emb|CAX60606.1| NADH dehydrogenase I chain B [Erwinia billingiae Eb661]
Length = 224
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + + G L ++ +V W R SL FGL+CC VEM +
Sbjct: 18 PLQKQEIVTDPLEKHVHQNVYMGKLEHAMHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFT 77
Query: 75 PRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 SVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|188533348|ref|YP_001907145.1| NADH dehydrogenase subunit B [Erwinia tasmaniensis Et1/99]
gi|238065142|sp|B2VIV4|NUOB_ERWT9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|188028390|emb|CAO96251.1| NADH dehydrogenase I chain B [Erwinia tasmaniensis Et1/99]
Length = 224
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + + G L ++ +V W R SL FGL+CC VEM +
Sbjct: 18 PLQKQEIVTDPLEKHVYQNVYMGKLEHALHDMVNWGRKNSLWPFNFGLSCCYVEMTTSFT 77
Query: 75 PRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGSEVIRASPRQADFMVVAGTCFTKMAPVVQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|258651217|ref|YP_003200373.1| NADH dehydrogenase subunit B [Nakamurella multipartita DSM 44233]
gi|258554442|gb|ACV77384.1| NADH-quinone oxidoreductase, B subunit [Nakamurella multipartita
DSM 44233]
Length = 199
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 84/151 (55%), Positives = 107/151 (70%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+TSV++LV W R SL TFGLACCA+EMM PRYDL RFG RAS
Sbjct: 4 EEKLPNGVLLTSVEKLVNWTRKASLFPATFGLACCAIEMMTTGAPRYDLGRFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V+SMG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLSMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP E LI IL L KI
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHAKIMDE 153
>gi|167042391|gb|ABZ07118.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured
marine crenarchaeote HF4000_ANIW97P9]
Length = 185
Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats.
Identities = 77/144 (53%), Positives = 97/144 (67%), Gaps = 1/144 (0%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97
+ + + W R SL + ACC+VE AS PRYD+ERFG S RQ D+++
Sbjct: 40 VDKPLGMAINWGRLWSLWPVHIETACCSVEFGAASGPRYDVERFGIIEAFGSLRQCDLVV 99
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
V GT+T KMA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D I+PVD+YVP
Sbjct: 100 VQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGILPVDVYVP 159
Query: 158 GCPPTAEALIYGILLLQKKIRRVG 181
GCPP E LI G LLLQ+KI+R+
Sbjct: 160 GCPPRPETLIQGCLLLQEKIKRMK 183
>gi|290475916|ref|YP_003468811.1| NADH dehydrogenase I subunit B [Xenorhabdus bovienii SS-2004]
gi|289175244|emb|CBJ82047.1| NADH dehydrogenase I chain B [Xenorhabdus bovienii SS-2004]
Length = 224
Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats.
Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V+ + + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQKQELVNDPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+++GT KMA ++R+YDQ+ EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVISGTCFVKMAPVIQRLYDQLLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 185
>gi|238920566|ref|YP_002934081.1| NADH dehydrogenase subunit B [Edwardsiella ictaluri 93-146]
gi|269139729|ref|YP_003296430.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
oxidoreductase [Edwardsiella tarda EIB202]
gi|259514663|sp|C5B8I5|NUOB_EDWI9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238870135|gb|ACR69846.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
gi|267985390|gb|ACY85219.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
oxidoreductase [Edwardsiella tarda EIB202]
gi|304559596|gb|ADM42260.1| NADH-ubiquinone oxidoreductase chain B [Edwardsiella tarda FL6-60]
Length = 224
Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats.
Identities = 74/169 (43%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQKQEVVSDPLEQHVHRSVYMGKLDHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGQERR 185
>gi|29831425|ref|NP_826059.1| NADH dehydrogenase I chain B [Streptomyces avermitilis MA-4680]
gi|81718089|sp|Q82DT6|NUOB2_STRAW RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|29608540|dbj|BAC72594.1| putative NADH dehydrogenase I chain B (complex I) [Streptomyces
avermitilis MA-4680]
Length = 203
Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats.
Identities = 78/137 (56%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+
Sbjct: 30 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 89
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 90 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 149
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GIL LQ+KI R
Sbjct: 150 ALLQGILKLQEKIARES 166
>gi|329765844|ref|ZP_08257410.1| NADH-quinone oxidoreductase, B subunit [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137687|gb|EGG41957.1| NADH-quinone oxidoreductase, B subunit [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 174
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 76/147 (51%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97
+ + + W R SL + ACC+VE AS PRYD+ERFG S RQ D+++
Sbjct: 26 IDKPLGYAINWGRIWSLWPVHIETACCSVEFGAASSPRYDVERFGIIEAFGSLRQCDLIV 85
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
V GT+T KMA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D ++PVD+YVP
Sbjct: 86 VQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPVDVYVP 145
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GCPP E LI G +LLQ+KI+R+ K
Sbjct: 146 GCPPRPETLIQGCMLLQEKIKRMKARK 172
>gi|297159509|gb|ADI09221.1| NADH dehydrogenase subunit B [Streptomyces bingchenggensis BCW-1]
Length = 184
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 83/152 (54%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+ GFL+T+V+Q AR S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EDKLPSGFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E L+ IL L +KIR
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIREEK 154
>gi|304413372|ref|ZP_07394845.1| NADH:ubiquinone oxidoreductase, chain B [Candidatus Regiella
insecticola LSR1]
gi|304284215|gb|EFL92608.1| NADH:ubiquinone oxidoreductase, chain B [Candidatus Regiella
insecticola LSR1]
Length = 225
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 74/147 (50%), Positives = 99/147 (67%), Gaps = 2/147 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D
Sbjct: 41 GKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y
Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVY 159
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGN 182
+PGCPP EA + +LLLQK I +
Sbjct: 160 IPGCPPRPEAYMQALLLLQKSIDKERR 186
>gi|91975807|ref|YP_568466.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
BisB5]
gi|123735640|sp|Q13BH4|NUOB1_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|91682263|gb|ABE38565.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
BisB5]
Length = 208
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 74/167 (44%), Positives = 107/167 (64%), Gaps = 3/167 (1%)
Query: 17 CSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
++ AD + + L T+++ L W+R SL FGL+CC VE + P
Sbjct: 5 PAIPPTPADSMSVEEHMARSN-LFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPV 63
Query: 77 YDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
YD RFG RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM PR+VISMG+CAN GG
Sbjct: 64 YDQARFGAEVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGGM 123
Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
Y YSVV+G DR +PVD+Y+PGCPP EA++ +++LQ++I
Sbjct: 124 Y-DIYSVVQGVDRFIPVDVYIPGCPPRPEAMLDALIMLQQQIGSERR 169
>gi|315638063|ref|ZP_07893248.1| NADH-quinone oxidoreductase subunit B [Campylobacter upsaliensis
JV21]
gi|315481911|gb|EFU72530.1| NADH-quinone oxidoreductase subunit B [Campylobacter upsaliensis
JV21]
Length = 167
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 83/147 (56%), Positives = 110/147 (74%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI
Sbjct: 14 VILTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTL K A RR+YD MP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP
Sbjct: 74 IAGTLCKKHAEFTRRLYDMMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E+ + +++LQKKIR+ +
Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159
>gi|257387965|ref|YP_003177738.1| NADH-quinone oxidoreductase subunit beta [Halomicrobium mukohataei
DSM 12286]
gi|257170272|gb|ACV48031.1| NADH-quinone oxidoreductase, B subunit [Halomicrobium mukohataei
DSM 12286]
Length = 229
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 77/170 (45%), Positives = 113/170 (66%), Gaps = 2/170 (1%)
Query: 12 SGQSSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
S Q + D F+ ++ F++T D+ + W R S+ + FG+ACC++EMM
Sbjct: 13 STQEARIGSGADDRFNSKLREAFGSTPFILTKFDKFMNWVRGSSMFMLQFGIACCSIEMM 72
Query: 71 QASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
++DL+RFG PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP++V+SMGSC
Sbjct: 73 HTYAVKHDLDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSC 132
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
GG + Y+V++G + ++PVDI+VPGCPP EALIYG+ LQ++I
Sbjct: 133 TISGGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGVAKLQERIAN 182
>gi|159485096|ref|XP_001700585.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas
reinhardtii]
gi|34328788|gb|AAQ63698.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas
reinhardtii]
gi|158272225|gb|EDO98029.1| NADH:ubiquinone oxidoreductase subunit 10 [Chlamydomonas
reinhardtii]
Length = 164
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 108/148 (72%), Positives = 124/148 (83%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F+V+ VD +V WAR GS+ MTFGLACCAVEMM A RYDL+R+G R SPRQSD M
Sbjct: 12 EFVVSKVDNVVNWARAGSIWPMTFGLACCAVEMMHAGASRYDLDRYGIIFRPSPRQSDAM 71
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAGTLTNKMA ALR+VYDQMPEP++V+SMGSCANGGGYYHYSY+VVRGCDR+VPVD+YV
Sbjct: 72 IVAGTLTNKMAPALRKVYDQMPEPKWVVSMGSCANGGGYYHYSYAVVRGCDRVVPVDVYV 131
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNVK 184
PGCPPTAE L+YG+L LQKKI R +
Sbjct: 132 PGCPPTAEGLLYGLLQLQKKIYRSKTTQ 159
>gi|146307436|ref|YP_001187901.1| NADH dehydrogenase subunit B [Pseudomonas mendocina ymp]
gi|238065195|sp|A4XV03|NUOB_PSEMY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|145575637|gb|ABP85169.1| NADH dehydrogenase subunit B [Pseudomonas mendocina ymp]
Length = 225
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 73/176 (41%), Positives = 108/176 (61%), Gaps = 6/176 (3%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
+ + + + + + + HK + ++++ + W R SL FGL+CC V
Sbjct: 12 APNEAYPIGQRELVSDPLLEDQVHKNIYMGKLEEVLNGAINWGRKNSLWPYNFGLSCCYV 71
Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM
Sbjct: 72 EMTTAFTAPHDVARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISM 131
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + G++LLQ+ I +
Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQERR 186
>gi|182436776|ref|YP_001824495.1| NADH dehydrogenase subunit B [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326777371|ref|ZP_08236636.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus
XylebKG-1]
gi|238065022|sp|B1W518|NUOB1_STRGG RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|178465292|dbj|BAG19812.1| putative NADH dehydrogenase chain B [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326657704|gb|EGE42550.1| NAD(P)H-quinone oxidoreductase subunit K [Streptomyces cf. griseus
XylebKG-1]
Length = 184
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GF++T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151
>gi|320009203|gb|ADW04053.1| NADH-quinone oxidoreductase, B subunit [Streptomyces flavogriseus
ATCC 33331]
Length = 184
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GF++T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPSPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
VPVDIY+PGCPP E LI IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKIQ 151
>gi|146312473|ref|YP_001177547.1| NADH dehydrogenase subunit B [Enterobacter sp. 638]
gi|238065140|sp|A4WCR6|NUOB_ENT38 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|145319349|gb|ABP61496.1| NADH dehydrogenase subunit B [Enterobacter sp. 638]
Length = 224
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 76/173 (43%), Positives = 106/173 (61%), Gaps = 5/173 (2%)
Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
L+K + + EI G L ++ +V W R S+ FGL+CC VEM+
Sbjct: 14 NDRYPLQKQEIVTDPLEQEINKSVYMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMV 73
Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
+ +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+C
Sbjct: 74 TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I +
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQDSIGKERR 185
>gi|284034118|ref|YP_003384049.1| NADH-quinone oxidoreductase subunit B [Kribbella flavida DSM 17836]
gi|283813411|gb|ADB35250.1| NADH-quinone oxidoreductase, B subunit [Kribbella flavida DSM
17836]
Length = 178
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 80/143 (55%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAG 100
V L+ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+G
Sbjct: 18 PVRYLLNWGRKYSLWVFNFGLACCAIEFIAASMGRHDFIRLGVIPFAPGPRQADLMVVSG 77
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
T+T+KMA A++R+YDQMPEP+YVIS GSC+N GG Y SY V +G D+I+PVD+YVPGCP
Sbjct: 78 TVTDKMAPAIKRLYDQMPEPKYVISFGSCSNSGGPYWDSYCVTKGVDQIIPVDVYVPGCP 137
Query: 161 PTAEALIYGILLLQKKIRRVGNV 183
P EAL+ GIL LQ+KI
Sbjct: 138 PRPEALLQGILKLQEKIAGENVT 160
>gi|225164240|ref|ZP_03726513.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
gi|224801145|gb|EEG19468.1| NADH dehydrogenase (quinone) [Opitutaceae bacterium TAV2]
Length = 178
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 105/155 (67%), Gaps = 2/155 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
++++ D ++ W R+ S+ M GLACC +E+M R+D+ RFG R S
Sbjct: 11 DSKIEGNVVISTADAVINWIRSNSIWPMPMGLACCGIELMGVGGARFDISRFGAEVMRFS 70
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ D MIVAGT+T KMAS +RR+YDQM EP++VI+MG+CA+ GG Y SY+ ++G DRI
Sbjct: 71 PRQCDCMIVAGTVTYKMASHVRRIYDQMAEPKWVIAMGACASSGGMYR-SYATLQGVDRI 129
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PVD+Y+ GCPP EA++ ++ +Q+KI+R +
Sbjct: 130 IPVDVYISGCPPRPEAVLDALVKMQEKIKRTPATR 164
>gi|261340675|ref|ZP_05968533.1| NADH dehydrogenase I subunit B [Enterobacter cancerogenus ATCC
35316]
gi|288317089|gb|EFC56027.1| NADH dehydrogenase I subunit B [Enterobacter cancerogenus ATCC
35316]
Length = 224
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 75/173 (43%), Positives = 107/173 (61%), Gaps = 5/173 (2%)
Query: 14 QSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
L+K + + E+ G L ++ +V W R S+ FGL+CC VEM+
Sbjct: 14 NDRYPLQKQEIVTDPLEQEVNKSVYMGKLEHAMHDMVNWGRKNSIWPYNFGLSCCYVEMV 73
Query: 71 QASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
+ +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+C
Sbjct: 74 TSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGAC 133
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 185
>gi|71892265|ref|YP_277999.1| NADH dehydrogenase subunit B [Candidatus Blochmannia pennsylvanicus
str. BPEN]
gi|123640866|sp|Q492H7|NUOB_BLOPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|71796371|gb|AAZ41122.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 236
Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats.
Identities = 76/180 (42%), Positives = 101/180 (56%), Gaps = 2/180 (1%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
+ + V + G L + ++V W R SL FGL+
Sbjct: 8 ARTDNSEDEQYPLQEKKIVTDPLEKNIQRNVFFGKLSAFLHKIVNWGRGNSLWPYNFGLS 67
Query: 64 CCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
CC VEM A +D+ RFG RASPRQ+D M++AGT KM ++R+YDQM EP++
Sbjct: 68 CCYVEMTTAFTAIHDVARFGSEVLRASPRQADFMVIAGTPFLKMVPVIQRLYDQMLEPKW 127
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA I G+LLL+K I
Sbjct: 128 VISMGACANSGGMY-DIYSVVQGVDKFLPVDLYIPGCPPRPEAYIQGLLLLKKSINEERR 186
>gi|294637178|ref|ZP_06715486.1| NADH dehydrogenase I subunit B [Edwardsiella tarda ATCC 23685]
gi|291089642|gb|EFE22203.1| NADH dehydrogenase I subunit B [Edwardsiella tarda ATCC 23685]
Length = 224
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 74/169 (43%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQKQEVVGDPLEQHVHRSVYMGKLDHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGQERR 185
>gi|308746024|ref|YP_003934562.1| NADH-plastoquinone oxidoreductase subunit K [Cheilanthes
lindheimeri]
gi|302375457|gb|ADL29831.1| NADH-plastoquinone oxidoreductase subunit K [Cheilanthes
lindheimeri]
Length = 250
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 102/164 (62%), Gaps = 2/164 (1%)
Query: 18 SLEKVDADFSRIS-SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
S + +R+ + + S+ +R SL + +G +CC +E R
Sbjct: 20 SEDVFPNSVARLPLQQSVSDSIFLASISDFSNRSRLSSLWPLLYGTSCCFIEFASLIGSR 79
Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG +
Sbjct: 80 FDFDRYGLVPRSSPRQADLIVTAGTITMKMAPSLIRLYEQMPEPKYVIAMGACTITGGMF 139
Query: 137 -HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
SYS VRG D+++PVDI++PGCPP EA+ + L+KKI R
Sbjct: 140 STDSYSTVRGVDKLIPVDIHLPGCPPKPEAITDAVTKLRKKIAR 183
>gi|328884313|emb|CCA57552.1| NADH-ubiquinone oxidoreductase chain B [Streptomyces venezuelae
ATCC 10712]
Length = 184
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 83/152 (54%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQSSK 154
>gi|302559060|ref|ZP_07311402.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces griseoflavus
Tu4000]
gi|302476678|gb|EFL39771.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces griseoflavus
Tu4000]
Length = 205
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 78/137 (56%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+
Sbjct: 34 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 93
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 94 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 153
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GIL LQ+KI R
Sbjct: 154 ALLQGILKLQEKIARES 170
>gi|238065263|sp|Q0RRW7|NUOB_FRAAA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
Length = 281
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 81/148 (54%), Positives = 107/148 (72%), Gaps = 2/148 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+ SV++L W+R SL TFGLACCA+EMM RYDL RFG RAS
Sbjct: 4 EEKLPGGVLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKI 177
VPVD+Y+PGCPP E L+ I+ L +KI
Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIIKLHEKI 150
>gi|238897506|ref|YP_002923185.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229465263|gb|ACQ67037.1| NADH dehydrogenase I chain B, binds FeS cluster N2 [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 226
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 73/160 (45%), Positives = 99/160 (61%), Gaps = 2/160 (1%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+ + G L ++ V W R SL FGL+CC VEM+ + +D+ RFG
Sbjct: 29 DPLDEQAHRNIYMGKLEHALHDTVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFG 88
Query: 84 FAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN GG Y YSV
Sbjct: 89 AEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGMY-DIYSV 147
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
V+G D+ +PVD+Y+PGCPP EA + + LLQ+ I +
Sbjct: 148 VQGVDKFLPVDVYIPGCPPRPEAYMQALFLLQESIGKERR 187
>gi|57505815|ref|ZP_00371740.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter
upsaliensis RM3195]
gi|57015845|gb|EAL52634.1| NADH2 dehydrogenase (ubiquinone) I chain B Cj1578c [Campylobacter
upsaliensis RM3195]
Length = 167
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 83/147 (56%), Positives = 110/147 (74%), Gaps = 1/147 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++TSVD+LV W R+ SL +++GLACCA+EMM A RYD +RFG RASPR S+VMI
Sbjct: 14 VVLTSVDKLVQWGRSNSLWALSYGLACCAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMI 73
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTL K A RR+YD MP+P++VISMGSCAN GG ++ +YS V+G DRI+PVDIYVP
Sbjct: 74 IAGTLCKKHAEFTRRLYDMMPDPKWVISMGSCANTGGMFN-TYSTVQGVDRIIPVDIYVP 132
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GC P E+ + +++LQKKIR+ +
Sbjct: 133 GCAPRPESFQFALMILQKKIRKEKASR 159
>gi|302543406|ref|ZP_07295748.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces hygroscopicus
ATCC 53653]
gi|302461024|gb|EFL24117.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces himastatinicus
ATCC 53653]
Length = 241
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 77/137 (56%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+
Sbjct: 73 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 132
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SY+V +G D+I+PVD+YVPGCPP E
Sbjct: 133 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 192
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GIL LQ+KI R
Sbjct: 193 ALLQGILKLQEKIARES 209
>gi|302521251|ref|ZP_07273593.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. SPB78]
gi|302430146|gb|EFL01962.1| NADH dehydrogenase subunit NuoB2 [Streptomyces sp. SPB78]
Length = 243
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 81/185 (43%), Positives = 112/185 (60%), Gaps = 5/185 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M +T V + ++ D + + ++ W R SL F
Sbjct: 40 MDVTPVPTTAVP----APVDLPDPTAPPAGTTGVLSRLAPQPMKVVLNWGRRYSLWVFNF 95
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
GLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPE
Sbjct: 96 GLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPE 155
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI
Sbjct: 156 PKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAH 215
Query: 180 VGNVK 184
+
Sbjct: 216 ESPAE 220
>gi|157736575|ref|YP_001489258.1| NADH-quinone oxidoreductase, B subunit [Arcobacter butzleri RM4018]
gi|315635738|ref|ZP_07891001.1| NADH-quinone oxidoreductase subunit B [Arcobacter butzleri JV22]
gi|238065055|sp|A8ERL5|NUOB_ARCB4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|157698429|gb|ABV66589.1| NADH-quinone oxidoreductase, B subunit [Arcobacter butzleri RM4018]
gi|315480035|gb|EFU70705.1| NADH-quinone oxidoreductase subunit B [Arcobacter butzleri JV22]
Length = 171
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 100/150 (66%), Gaps = 2/150 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
+ T +D V W R+ SL M FG ACC +E M + +YD+ RFG R SPRQ+D
Sbjct: 11 DSIVTTRLDHAVNWGRSYSLWPMAFGTACCGIEFMAVAGAKYDVSRFGAEVVRFSPRQAD 70
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
++IVAGT++ K A L+++Y+QM EP++VISMG+CA GG ++ +Y+ V+G D I+PVD
Sbjct: 71 LLIVAGTISYKQAPILKKIYEQMCEPKWVISMGACACSGG-FYDNYTTVQGIDEIIPVDE 129
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
YV GCPP EA++ I+ +Q+K + +K
Sbjct: 130 YVAGCPPRPEAVLDAIMRIQEKAKTESIIK 159
>gi|319760615|ref|YP_004124553.1| NADH-quinone oxidoreductase, subunit B [Candidatus Blochmannia
vafer str. BVAF]
gi|318039329|gb|ADV33879.1| NADH-quinone oxidoreductase, subunit B [Candidatus Blochmannia
vafer str. BVAF]
Length = 222
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 77/179 (43%), Positives = 101/179 (56%), Gaps = 2/179 (1%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
N + V + + G L + ++V W R SL FGL+C
Sbjct: 9 RTNTNDNDQYPLQDQKLVSDPLEKCVQKSVFFGKLTAFLHKIVNWGRGNSLWPYNFGLSC 68
Query: 65 CAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
C VEM A +D+ RFG R+SPRQSD M++AGT KM ++R+YDQM EP++V
Sbjct: 69 CYVEMTTAFTAVHDVARFGSEVLRSSPRQSDFMVIAGTPFIKMVPVIQRLYDQMLEPKWV 128
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
ISMG+CAN GG Y YSVV+G D+ +PVDIY+PGCPP EA I +LLL+K I
Sbjct: 129 ISMGACANSGGMY-DIYSVVQGVDKFLPVDIYIPGCPPRPEAYIQALLLLKKSIYEERR 186
>gi|29831381|ref|NP_826015.1| NADH dehydrogenase subunit B [Streptomyces avermitilis MA-4680]
gi|81718124|sp|Q82DY0|NUOB1_STRAW RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|29608496|dbj|BAC72550.1| putative NADH dehydrogenase I chain B (complex I) [Streptomyces
avermitilis MA-4680]
Length = 184
Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats.
Identities = 84/152 (55%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E LI IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKIQSSK 154
>gi|323702663|ref|ZP_08114324.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum
nigrificans DSM 574]
gi|323532326|gb|EGB22204.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum
nigrificans DSM 574]
Length = 203
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 85/195 (43%), Positives = 116/195 (59%), Gaps = 14/195 (7%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKG------------FLVTSVDQLVTWAR 51
N+ I+G VD + G V +++L+ AR
Sbjct: 7 NKGNEASINGSGPVGNPPVDEMQEETIRRLKKIGADPAVIGEVTKTVSVGPLEKLLNLAR 66
Query: 52 TGSLMWMTFGLACCAVE-MMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASA 109
SL + FGLACCA+E +M A+M R+DL RFG+ RASPRQ+DVMIV GT+T K A
Sbjct: 67 ANSLWPLGFGLACCAIEGLMAANMARFDLSRFGYEVMRASPRQADVMIVCGTVTKKAAPF 126
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
+ R+Y+QM EP+YVI+MGSCA GG + SY+VV G D+++PVD+Y+PGCPP +ALI+
Sbjct: 127 VVRLYEQMAEPKYVIAMGSCAISGGPFVDSYAVVPGVDKLIPVDVYLPGCPPRPDALIHA 186
Query: 170 ILLLQKKIRRVGNVK 184
L L++KI VK
Sbjct: 187 FLKLKEKIINPEVVK 201
>gi|118576844|ref|YP_876587.1| NADH-ubiquinone oxidoreductase, subunit B [Cenarchaeum symbiosum A]
gi|118195365|gb|ABK78283.1| NADH-ubiquinone oxidoreductase, subunit B [Cenarchaeum symbiosum A]
Length = 160
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 75/147 (51%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97
+ + + W R SL + ACC+VE AS P+YD+ERFG S RQ D+++
Sbjct: 12 IDKPLGYAINWGRIWSLWPVHIETACCSVEFGAASGPKYDVERFGIIEAFGSLRQCDLIV 71
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
V GT+T KMA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D ++PVD+YVP
Sbjct: 72 VQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGVLPVDVYVP 131
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GCPP E LI G +LLQ+KI+R+ K
Sbjct: 132 GCPPRPETLIQGCMLLQEKIKRMRARK 158
>gi|284009321|emb|CBA76481.1| NADH-quinone oxidoreductase chain B [Arsenophonus nasoniae]
Length = 229
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 74/169 (43%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+ + V + + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 23 PLQTQQVVGDPLEQHVHRSVYMGKLEHALHNMVNWGRKNSLWPYNFGLSCCYVEMVTSFT 82
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM P++VISMG+CAN G
Sbjct: 83 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYDQMLAPKWVISMGACANSG 142
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 143 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 190
>gi|330503270|ref|YP_004380139.1| NADH dehydrogenase subunit B [Pseudomonas mendocina NK-01]
gi|328917556|gb|AEB58387.1| NADH dehydrogenase subunit B [Pseudomonas mendocina NK-01]
Length = 225
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 74/176 (42%), Positives = 106/176 (60%), Gaps = 6/176 (3%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
+ + + + + + + HK + + + V W R SL FGL+CC V
Sbjct: 12 APNEAYPIGQREVVSDPLLEDQVHKNIYMGKLSDVLNGAVNWGRKNSLWPYNFGLSCCYV 71
Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM
Sbjct: 72 EMTTAFTAPHDVARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISM 131
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + G++LLQ+ I +
Sbjct: 132 GSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQERR 186
>gi|302543443|ref|ZP_07295785.1| NADH dehydrogenase I, B subunit [Streptomyces hygroscopicus ATCC
53653]
gi|302461061|gb|EFL24154.1| NADH dehydrogenase I, B subunit [Streptomyces himastatinicus ATCC
53653]
Length = 184
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 84/152 (55%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q AR S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASTGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E L+ IL L +KIR
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHEKIREEK 154
>gi|295837124|ref|ZP_06824057.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74]
gi|318057842|ref|ZP_07976565.1| NADH dehydrogenase subunit B [Streptomyces sp. SA3_actG]
gi|318078940|ref|ZP_07986272.1| NADH dehydrogenase subunit B [Streptomyces sp. SA3_actF]
gi|333025118|ref|ZP_08453182.1| putative NADH dehydrogenase subunit B [Streptomyces sp. Tu6071]
gi|197697234|gb|EDY44167.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. SPB74]
gi|332744970|gb|EGJ75411.1| putative NADH dehydrogenase subunit B [Streptomyces sp. Tu6071]
Length = 184
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 82/152 (53%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E LI IL L +K++
Sbjct: 123 VPVDIYLPGCPPRPEMLIDAILKLHQKVQGTK 154
>gi|163751847|ref|ZP_02159062.1| NADH dehydrogenase beta subunit [Shewanella benthica KT99]
gi|161328263|gb|EDP99425.1| NADH dehydrogenase beta subunit [Shewanella benthica KT99]
Length = 218
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 75/150 (50%), Positives = 107/150 (71%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRAS 89
E+ K L+T ++ LV W R+ SL FGL+CC VEM + R+D+ RFG RA+
Sbjct: 24 QEVVEKNLLITRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRHDIARFGSEVIRAT 83
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PR++D+++++GT+ KMA ++ +YDQM EP++VISMGSCAN GG Y YSVV+G D+
Sbjct: 84 PREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVISMGSCANSGGMY-DVYSVVQGADKF 142
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+P+D+YVPGCPP EAL+YG+ LLQ+ I+
Sbjct: 143 LPIDLYVPGCPPRPEALMYGLTLLQEAIKN 172
>gi|316935784|ref|YP_004110766.1| NADH-quinone oxidoreductase subunit B [Rhodopseudomonas palustris
DX-1]
gi|315603498|gb|ADU46033.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
DX-1]
Length = 208
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 69/164 (42%), Positives = 104/164 (63%), Gaps = 3/164 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ + + + L T+++ L W+R SL FGL+CC VE + P YD
Sbjct: 8 PGMPGEQRSVEEHMALSS-LFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPVYDQ 66
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM PR+VI+MG+CA GG Y
Sbjct: 67 ARFGAEVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMY-D 125
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
YSVV+G DR +PVD+Y+PGCPP EA++ +++LQ+++
Sbjct: 126 IYSVVQGVDRFIPVDVYIPGCPPRPEAVLDALIMLQQQVGSERR 169
>gi|156933123|ref|YP_001437039.1| NADH dehydrogenase subunit B [Cronobacter sakazakii ATCC BAA-894]
gi|260598704|ref|YP_003211275.1| NADH dehydrogenase subunit B [Cronobacter turicensis z3032]
gi|238065141|sp|A7MH23|NUOB_ENTS8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|156531377|gb|ABU76203.1| hypothetical protein ESA_00933 [Cronobacter sakazakii ATCC BAA-894]
gi|260217881|emb|CBA32432.1| NADH-quinone oxidoreductase subunit B [Cronobacter turicensis
z3032]
Length = 224
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 75/169 (44%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQKQEIVTDPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 185
>gi|21222946|ref|NP_628725.1| NADH dehydrogenase subunit B [Streptomyces coelicolor A3(2)]
gi|256785940|ref|ZP_05524371.1| NADH dehydrogenase subunit B [Streptomyces lividans TK24]
gi|329935996|ref|ZP_08285796.1| NADH dehydrogenase subunit B [Streptomyces griseoaurantiacus M045]
gi|81625663|sp|Q9XAQ5|NUOB1_STRCO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|5042276|emb|CAB44530.1| NuoB, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
gi|329304474|gb|EGG48352.1| NADH dehydrogenase subunit B [Streptomyces griseoaurantiacus M045]
Length = 184
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 82/152 (53%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQSSK 154
>gi|307328659|ref|ZP_07607832.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger
Tu 4113]
gi|306885771|gb|EFN16784.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger
Tu 4113]
Length = 231
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 108/175 (61%), Gaps = 1/175 (0%)
Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAV 67
+ + + D T + ++ W R SL FGLACCA+
Sbjct: 18 SAVPAPVPASVPASAPVDLPEPRRLGTLARLAPEPMKVVLNWGRRYSLWVFNFGLACCAI 77
Query: 68 EMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
E + ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPEP+YVIS
Sbjct: 78 EFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPEPKYVISF 137
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
G+C+N GG Y SY+V +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI R
Sbjct: 138 GACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARES 192
>gi|48478473|ref|YP_024179.1| NADH dehydrogenase subunit B [Picrophilus torridus DSM 9790]
gi|48431121|gb|AAT43986.1| NADH-quinone oxidoreductase chain B [Picrophilus torridus DSM 9790]
Length = 154
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 81/150 (54%), Positives = 106/150 (70%), Gaps = 1/150 (0%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASP 90
+ G+ +T+V++ + WAR+ SL +T GLACCA+EMM D+ RFG R SP
Sbjct: 2 KTGDFGYQLTTVEKALEWARSNSLWPLTMGLACCAIEMMATQGSNLDIARFGSEIFRNSP 61
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D+MIVAGT T +MA +RR+Y++MP P+YVI+MG C GG Y YSVV G DR++
Sbjct: 62 RQADLMIVAGTTTKRMAPRVRRIYEEMPYPKYVIAMGVCVIQGGPYVDGYSVVLGVDRVI 121
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
PVD+YVPGCPP+ +AL GILLLQKKIR
Sbjct: 122 PVDVYVPGCPPSPQALTNGILLLQKKIRNE 151
>gi|261416729|ref|YP_003250412.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261373185|gb|ACX75930.1| NADH-quinone oxidoreductase, B subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302325376|gb|ADL24577.1| NADH-quinone oxidoreductase, B/C subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 419
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 73/156 (46%), Positives = 113/156 (72%), Gaps = 2/156 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
+I I ++V ++D +V WAR S+ +T+G +CCA+EMM +SM RYD+ RFG
Sbjct: 8 PKILDPIPGGKYVVNAIDYVVNWARANSIWPLTYGTSCCAIEMMSSSMARYDIARFGSEV 67
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVR 144
R+SPRQ+D+ I+AGT+T +MA A++ +++Q+P P+YVI+MG+C GG + + +YSVVR
Sbjct: 68 FRSSPRQADLFILAGTITRRMAPAIQMLWEQIPGPKYVIAMGACTISGGPFIYDNYSVVR 127
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
G ++PVD++VPGCPP EAL +G+L L++KI +
Sbjct: 128 GAQNLIPVDVFVPGCPPRPEALFHGLLTLREKILKE 163
>gi|330881187|gb|EGH15336.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 224
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 106/176 (60%), Gaps = 7/176 (3%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
+ + K + + ++ HK + ++ + V W R SL FGL+CC V
Sbjct: 12 APNEQYPIGKRETVSDPLEDQV-HKNIYMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYV 70
Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
EM A +D+ RFG R SPRQ+D M++AGT KMA ++R+Y+QM EP++VISM
Sbjct: 71 EMTTAFTAPHDIARFGAEVIRGSPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I +
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKERR 185
>gi|294630797|ref|ZP_06709357.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. e14]
gi|292834130|gb|EFF92479.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. e14]
Length = 184
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 83/152 (54%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQSTK 154
>gi|167044398|gb|ABZ09075.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured
marine crenarchaeote HF4000_APKG6D3]
Length = 185
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 76/145 (52%), Positives = 97/145 (66%), Gaps = 1/145 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
+ + + W R SL + ACC+VE AS PRYD+ERFG S RQ D++
Sbjct: 39 VVDKPLGMAINWGRLWSLWPVHIETACCSVEFGAASGPRYDVERFGIIEAFGSLRQCDLV 98
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
+V GT+T KMA LR VYDQMPEP+YVI+MG+CA GG Y SY+V+ G D I+PVD+YV
Sbjct: 99 VVQGTITRKMAPRLRLVYDQMPEPKYVIAMGACAITGGLYFDSYNVLPGIDGILPVDVYV 158
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPP E LI G +LLQ+KI+R+
Sbjct: 159 PGCPPRPETLIQGCILLQEKIKRMK 183
>gi|39937323|ref|NP_949599.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris CGA009]
gi|192293103|ref|YP_001993708.1| NADH dehydrogenase subunit B [Rhodopseudomonas palustris TIE-1]
gi|81619355|sp|Q6N1Y9|NUOB2_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|238065035|sp|B3Q6T4|NUOB2_RHOPT RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|39651181|emb|CAE29704.1| NADH-ubiquinone dehydrogenase chain B [Rhodopseudomonas palustris
CGA009]
gi|192286852|gb|ACF03233.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
TIE-1]
Length = 208
Score = 201 bits (510), Expect = 5e-50, Method: Composition-based stats.
Identities = 69/164 (42%), Positives = 104/164 (63%), Gaps = 3/164 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ + + + L T+++ L W+R SL FGL+CC VE + P YD
Sbjct: 8 PGMPDEQRSVEEHMALSS-LFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTVLTPVYDQ 66
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM PR+VI+MG+CA GG Y
Sbjct: 67 ARFGAEVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMY-D 125
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
YSVV+G DR +PVD+Y+PGCPP EA++ +++LQ+++
Sbjct: 126 IYSVVQGVDRFIPVDVYIPGCPPRPEAVLDALIMLQQQVGSERR 169
>gi|255533962|ref|YP_003094334.1| NADH dehydrogenase subunit B [Pedobacter heparinus DSM 2366]
gi|255346946|gb|ACU06272.1| NADH-quinone oxidoreductase, B subunit [Pedobacter heparinus DSM
2366]
Length = 180
Score = 201 bits (510), Expect = 6e-50, Method: Composition-based stats.
Identities = 66/163 (40%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D + I GF TS+D+++ AR+ SL + F +CC +E M YD RF
Sbjct: 3 DINIVEAPPGIEGSGFFATSLDKVIGLARSHSLWPLPFATSCCGIEFMATMGSHYDFGRF 62
Query: 83 GFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
G SPRQ+D+++V GT+ KM+ L++VY QM EPR+V+++G+CA+ GG + +YS
Sbjct: 63 GSERLSFSPRQADLLMVMGTIAKKMSPVLKQVYLQMAEPRWVMAVGACASSGGIF-DTYS 121
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
V++G D I+PVD+YVPGCPP EA++ G +Q+ +R + +
Sbjct: 122 VLQGIDEIIPVDVYVPGCPPRPEAILDGFGKIQELVRNESSRR 164
>gi|257077079|ref|ZP_05571440.1| NADH dehydrogenase subunit B [Ferroplasma acidarmanus fer1]
Length = 157
Score = 201 bits (510), Expect = 6e-50, Method: Composition-based stats.
Identities = 76/150 (50%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASP 90
+ G T++++ + W R+ SL +T GLACCA+EMM D+ RFG R SP
Sbjct: 5 KTGDLGVKTTTLEKALQWGRSNSLWPLTMGLACCAIEMMATQAADLDMARFGSEIFRNSP 64
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAGT T +MA ++R+Y++MP P+YVI+MG C GG Y YSVV G D+++
Sbjct: 65 RQSDLMIVAGTTTKRMAPRVKRIYEEMPYPKYVIAMGVCVIQGGPYVDGYSVVLGVDKVI 124
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
PVD+YVPGCPP+ +AL YG++ LQKKIR
Sbjct: 125 PVDVYVPGCPPSPQALTYGLITLQKKIRNE 154
>gi|297192787|ref|ZP_06910185.1| NADH dehydrogenase subunit B (NuoB) [Streptomyces pristinaespiralis
ATCC 25486]
gi|197721026|gb|EDY64934.1| NADH dehydrogenase subunit B (NuoB) [Streptomyces pristinaespiralis
ATCC 25486]
Length = 184
Score = 201 bits (510), Expect = 6e-50, Method: Composition-based stats.
Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151
>gi|148260123|ref|YP_001234250.1| NADH-quinone oxidoreductase, B subunit [Acidiphilium cryptum JF-5]
gi|238065025|sp|A5FXJ9|NUOB2_ACICJ RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|146401804|gb|ABQ30331.1| NADH dehydrogenase subunit B [Acidiphilium cryptum JF-5]
Length = 231
Score = 201 bits (510), Expect = 6e-50, Method: Composition-based stats.
Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
+ ++ G + + ++ + + ++ +V W R S+ FGL+C
Sbjct: 15 STTAPLLRGLGTAGQPAAPSPGGGTFTDAVRRNVALGRLEDMVAWGRKYSIWPFNFGLSC 74
Query: 65 CAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
C VEM A ++D+ RFG RA+PR++D+++++GT+ KMA ++ +YDQM EPR+V
Sbjct: 75 CYVEMATAFTSKFDIARFGSEVLRATPREADLIVISGTVFVKMAPVIKYLYDQMLEPRWV 134
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
ISMG+CAN GG Y Y+VV+G D +PVD+YVPGCPP +AL+ G++LLQ I
Sbjct: 135 ISMGACANSGGMY-DIYAVVQGADSFLPVDVYVPGCPPRPDALLEGLMLLQNSIGSERR 192
>gi|170727205|ref|YP_001761231.1| NADH-quinone oxidoreductase subunit B [Shewanella woodyi ATCC
51908]
gi|238065215|sp|B1KJU9|NUOB_SHEWM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|169812552|gb|ACA87136.1| NADH-quinone oxidoreductase, B subunit [Shewanella woodyi ATCC
51908]
Length = 213
Score = 201 bits (510), Expect = 6e-50, Method: Composition-based stats.
Identities = 77/162 (47%), Positives = 111/162 (68%), Gaps = 2/162 (1%)
Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY 77
S ++ ++ E+ K LVT ++ LV W R+ SL FGL+CC VEM + R+
Sbjct: 6 SKPEIIPTSTQTMQEVVEKNLLVTRLEDLVAWGRSNSLWPFNFGLSCCYVEMATSFTSRH 65
Query: 78 DLERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
D+ RFG RA+PR++D+++++GT+ KMA ++ +YDQM EP++VI MGSCAN GG Y
Sbjct: 66 DIARFGSEVIRATPREADLIVISGTVFLKMAPVIKHLYDQMLEPKWVICMGSCANSGGMY 125
Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
YSVV+G DR +P+D+YVPGCPP EAL+YG+ LLQ+ I+
Sbjct: 126 -DVYSVVQGADRFLPIDLYVPGCPPRPEALMYGLTLLQEAIK 166
>gi|24213594|ref|NP_711075.1| NADH dehydrogenase (ubiquinone) chain B [Leptospira interrogans
serovar Lai str. 56601]
gi|45658576|ref|YP_002662.1| NADH dehydrogenase subunit B [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|81471022|sp|Q8F7Q0|NUOB_LEPIN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81567883|sp|Q72NT7|NUOB_LEPIC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|24194386|gb|AAN48093.1| NADH dehydrogenase (ubiquinone) chain B [Leptospira interrogans
serovar Lai str. 56601]
gi|45601820|gb|AAS71299.1| NADH dehydrogenase I B subunit [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 186
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 106/159 (66%), Gaps = 2/159 (1%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+D S+ + + +V+ ++ W R+ SL F ACC +E M + YD+ RFG
Sbjct: 4 SDLSKTPGQALGDMVQLGNVESVIQWGRSYSLWPYPFATACCGIEYMSTACSDYDIARFG 63
Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
P SPRQ+D+++V GT+T KMA LR++YDQM EP++VIS+G+CA+ GG + ++Y V
Sbjct: 64 AERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMF-HTYGV 122
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
++G DRI+PVD+YVPGCPP EA++ +L LQ K++ G
Sbjct: 123 LQGVDRILPVDVYVPGCPPRPEAILDALLKLQTKLKTQG 161
>gi|291618188|ref|YP_003520930.1| NuoB [Pantoea ananatis LMG 20103]
gi|291153218|gb|ADD77802.1| NuoB [Pantoea ananatis LMG 20103]
gi|327394581|dbj|BAK12003.1| NADH-quinone oxidoreductase chain B NuoB [Pantoea ananatis AJ13355]
Length = 225
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 75/169 (44%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R SL FGL+CC VEM +
Sbjct: 19 PLQKQEIVSDPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFT 78
Query: 75 PRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M++AGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 79 AVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSG 138
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 139 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 186
>gi|302559106|ref|ZP_07311448.1| NADH-quinone oxidoreductase, B subunit [Streptomyces griseoflavus
Tu4000]
gi|302476724|gb|EFL39817.1| NADH-quinone oxidoreductase, B subunit [Streptomyces griseoflavus
Tu4000]
Length = 184
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151
>gi|70731257|ref|YP_260998.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf-5]
gi|123654431|sp|Q4K9T5|NUOB_PSEF5 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|68345556|gb|AAY93162.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas fluorescens
Pf-5]
Length = 224
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 107/176 (60%), Gaps = 7/176 (3%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
+ + + + + ++ HK + ++ + V W R SL FGL+CC V
Sbjct: 12 APNDQYPIGERETVSDPLEDQV-HKNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70
Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM
Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I +
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERR 185
>gi|215428603|ref|ZP_03426522.1| NADH dehydrogenase subunit C [Mycobacterium tuberculosis T92]
Length = 420
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 74/150 (49%), Positives = 110/150 (73%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+
Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L++ IL L +KI++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQQ 152
>gi|239929563|ref|ZP_04686516.1| NADH dehydrogenase I chain B [Streptomyces ghanaensis ATCC 14672]
Length = 231
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 78/137 (56%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+
Sbjct: 48 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 107
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 108 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 167
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GIL LQ+KI R
Sbjct: 168 ALLQGILKLQEKIARES 184
>gi|308187603|ref|YP_003931734.1| NADH dehydrogenase I chain B [Pantoea vagans C9-1]
gi|308058113|gb|ADO10285.1| NADH dehydrogenase I chain B [Pantoea vagans C9-1]
Length = 225
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 75/169 (44%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R SL FGL+CC VEM +
Sbjct: 19 PLQKQEIVSDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFT 78
Query: 75 PRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M++AGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 79 AVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSG 138
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 139 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 186
>gi|307328622|ref|ZP_07607795.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger
Tu 4113]
gi|306885734|gb|EFN16747.1| NADH-quinone oxidoreductase, B subunit [Streptomyces violaceusniger
Tu 4113]
Length = 184
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 84/152 (55%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q AR S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGLARKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E L+ IL L +KIR
Sbjct: 123 VPVDIYLPGCPPRPEMLLDSILKLHQKIREEK 154
>gi|291437889|ref|ZP_06577279.1| NADH dehydrogenase subunit NuoB2 [Streptomyces ghanaensis ATCC
14672]
gi|291340784|gb|EFE67740.1| NADH dehydrogenase subunit NuoB2 [Streptomyces ghanaensis ATCC
14672]
Length = 229
Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats.
Identities = 78/137 (56%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+
Sbjct: 46 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 105
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 106 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 165
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GIL LQ+KI R
Sbjct: 166 ALLQGILKLQEKIARES 182
>gi|326402924|ref|YP_004283005.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum
AIU301]
gi|325049785|dbj|BAJ80123.1| NADH-quinone oxidoreductase subunit B [Acidiphilium multivorum
AIU301]
Length = 231
Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats.
Identities = 68/179 (37%), Positives = 107/179 (59%), Gaps = 2/179 (1%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
+ ++ G + + ++ + + ++ +V W R S+ FGL+C
Sbjct: 15 STTAPLLRGLGTAGQPAAPSPGGGTFTDAVRRNVALGRLEDMVAWGRKYSIWPFNFGLSC 74
Query: 65 CAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
C VEM A ++D+ RFG RA+PR++D+++++GT+ KMA ++ +YDQM EPR+V
Sbjct: 75 CYVEMATAFTSKFDIARFGSEVLRATPREADLIVISGTVFVKMAPVIKYLYDQMLEPRWV 134
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
ISMG+CAN GG Y Y+VV+G D +PVD+YVPGCPP +AL+ G++LLQ I
Sbjct: 135 ISMGACANSGGMY-DIYAVVQGADSFLPVDVYVPGCPPRPDALLEGLMLLQNSIGSERR 192
>gi|330958158|gb|EGH58418.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 224
Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 107/176 (60%), Gaps = 7/176 (3%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
+ + K + + ++ HK + ++ + V W R SL FGL+CC V
Sbjct: 12 APNEQYPIGKRETVSDPLEDQV-HKNIFMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYV 70
Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM
Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTPFLKMAPIIQRLYEQMLEPKWVISM 130
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G+CAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I +
Sbjct: 131 GACANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERR 185
>gi|304398215|ref|ZP_07380089.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. aB]
gi|304354081|gb|EFM18454.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. aB]
Length = 225
Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats.
Identities = 75/169 (44%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R SL FGL+CC VEM +
Sbjct: 19 PLQKQEIVSDPLEQHVHRSVYMGKLENALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFT 78
Query: 75 PRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M++AGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 79 AVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSG 138
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 139 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 186
>gi|28870530|ref|NP_793149.1| NADH dehydrogenase I subunit B [Pseudomonas syringae pv. tomato
str. DC3000]
gi|71737615|ref|YP_275280.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. phaseolicola
1448A]
gi|213970034|ref|ZP_03398166.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato T1]
gi|237800544|ref|ZP_04589005.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. oryzae str.
1_6]
gi|257485440|ref|ZP_05639481.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tabaci ATCC
11528]
gi|289625427|ref|ZP_06458381.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289649290|ref|ZP_06480633.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str.
2250]
gi|289679197|ref|ZP_06500087.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae
FF5]
gi|298487549|ref|ZP_07005591.1| NADH-ubiquinone oxidoreductase chain B [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|301381389|ref|ZP_07229807.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato
Max13]
gi|302062160|ref|ZP_07253701.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato K40]
gi|302130363|ref|ZP_07256353.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato NCPPB
1108]
gi|302185024|ref|ZP_07261697.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae
642]
gi|81730555|sp|Q87ZQ8|NUOB_PSESM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|123635950|sp|Q48H53|NUOB_PSE14 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|28853778|gb|AAO56844.1| NADH dehydrogenase I, B subunit [Pseudomonas syringae pv. tomato
str. DC3000]
gi|71558168|gb|AAZ37379.1| NADH-quinone oxidoreductase, B subunit [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|213925138|gb|EEB58701.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato T1]
gi|298157933|gb|EFH99011.1| NADH-ubiquinone oxidoreductase chain B [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320323789|gb|EFW79873.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327928|gb|EFW83933.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330866837|gb|EGH01546.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330875772|gb|EGH09921.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. morsprunorum
str. M302280PT]
gi|330889659|gb|EGH22320.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. mori str.
301020]
gi|330900626|gb|EGH32045.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. japonica
str. M301072PT]
gi|330940383|gb|EGH43487.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. pisi str.
1704B]
gi|330954562|gb|EGH54822.1| NADH dehydrogenase subunit B [Pseudomonas syringae Cit 7]
gi|330965590|gb|EGH65850.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330981370|gb|EGH79473.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aptata str.
DSM 50252]
gi|330987943|gb|EGH86046.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331010726|gb|EGH90782.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tabaci ATCC
11528]
gi|331017272|gb|EGH97328.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. lachrymans
str. M302278PT]
gi|331023404|gb|EGI03461.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 224
Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 107/176 (60%), Gaps = 7/176 (3%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
+ + K + + ++ HK + ++ + V W R SL FGL+CC V
Sbjct: 12 APNEQYPIGKRETVSDPLEDQV-HKNIYMGKLEDVLNGAVNWGRKNSLWPYNFGLSCCYV 70
Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM
Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I +
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKERR 185
>gi|294630833|ref|ZP_06709393.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces sp. e14]
gi|292834166|gb|EFF92515.1| NADH dehydrogenase I, 20 kDa subunit [Streptomyces sp. e14]
Length = 236
Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats.
Identities = 77/137 (56%), Positives = 101/137 (73%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+
Sbjct: 51 VLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTD 110
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP E
Sbjct: 111 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPE 170
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GIL LQ+KI
Sbjct: 171 ALLQGILKLQEKIAHES 187
>gi|282860720|ref|ZP_06269786.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE]
gi|282564456|gb|EFB69992.1| NADH-quinone oxidoreductase, B subunit [Streptomyces sp. ACTE]
Length = 184
Score = 200 bits (509), Expect = 7e-50, Method: Composition-based stats.
Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GF++T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFVLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPSPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151
>gi|66046427|ref|YP_236268.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. syringae
B728a]
gi|75501522|sp|Q4ZRJ2|NUOB_PSEU2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|63257134|gb|AAY38230.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Pseudomonas
syringae pv. syringae B728a]
gi|330972908|gb|EGH72974.1| NADH dehydrogenase subunit B [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 224
Score = 200 bits (509), Expect = 8e-50, Method: Composition-based stats.
Identities = 76/176 (43%), Positives = 107/176 (60%), Gaps = 7/176 (3%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
+ + K + + ++ HK + ++ + V W R SL FGL+CC V
Sbjct: 12 APNEQYPIGKRETVSDPLEDQV-HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70
Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM
Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I +
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKERR 185
>gi|282891849|ref|ZP_06300329.1| hypothetical protein pah_c198o042 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498282|gb|EFB40621.1| hypothetical protein pah_c198o042 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 157
Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats.
Identities = 84/142 (59%), Positives = 108/142 (76%), Gaps = 2/142 (1%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
F+V + +L+ WAR+ SL FGLACCA+EMM A+ RYD+ RFG RASPRQSDVM
Sbjct: 11 FIVAPLQKLIDWARSNSLWPAQFGLACCAIEMMSAAASRYDMARFGMEVFRASPRQSDVM 70
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAG ++ KMA LR +Y+QM EP++VI+MG CA+ GG Y+ +Y+V+ G D+IVPVD+YV
Sbjct: 71 IVAGRVSQKMAPVLRTIYEQMLEPKWVIAMGDCASTGGVYN-NYAVIPGVDQIVPVDVYV 129
Query: 157 PGCPPTAEALIYGILLLQKKIR 178
GCPP EALI G++LLQ KIR
Sbjct: 130 AGCPPRPEALIDGLILLQNKIR 151
>gi|227112326|ref|ZP_03825982.1| NADH dehydrogenase subunit B [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 224
Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats.
Identities = 75/169 (44%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
S E V + + G L ++ V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQSQEIVSDPLEQHVHRSVYMGKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIGKERR 185
>gi|239943477|ref|ZP_04695414.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998]
gi|239989931|ref|ZP_04710595.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 11379]
gi|291446948|ref|ZP_06586338.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998]
gi|291349895|gb|EFE76799.1| NADH dehydrogenase subunit B [Streptomyces roseosporus NRRL 15998]
Length = 184
Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats.
Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GF++T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFVLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHQKIQ 151
>gi|77459826|ref|YP_349333.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf0-1]
gi|123604056|sp|Q3KA62|NUOB_PSEPF RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|77383829|gb|ABA75342.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens Pf0-1]
Length = 224
Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 107/176 (60%), Gaps = 7/176 (3%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
+ + + + + ++ HK + ++ + V W R SL FGL+CC V
Sbjct: 12 APNEQYPIGQRETVSDPLEDQV-HKNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70
Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM
Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I +
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERR 185
>gi|239980104|ref|ZP_04702628.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074]
Length = 216
Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats.
Identities = 80/183 (43%), Positives = 111/183 (60%), Gaps = 8/183 (4%)
Query: 1 MGLTTVNQKIISGQSSCSLE-KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMT 59
M +T +S + ++ + ++ W R SL
Sbjct: 1 MDVTPPATGQGDAPASTPVALPAPQRLGGLAR------LAPAPMKVVLNWGRRYSLWVFN 54
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMP
Sbjct: 55 FGLACCAIEFIAASMARHDFMRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMP 114
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
EP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GI+ LQ+KI
Sbjct: 115 EPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGIIKLQEKIA 174
Query: 179 RVG 181
R
Sbjct: 175 RES 177
>gi|330810464|ref|YP_004354926.1| NADH-quinone oxidoreductase subunit B [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|9719438|gb|AAF97798.1|AF281148_2 NADH dehydrogenase I subunit B [Pseudomonas fluorescens]
gi|327378572|gb|AEA69922.1| NADH-quinone oxidoreductase subunit B [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 224
Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats.
Identities = 75/157 (47%), Positives = 101/157 (64%), Gaps = 6/157 (3%)
Query: 31 SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
+ HK + ++ + V W R SL FGL+CC VEM A +D+ RFG
Sbjct: 30 EDQVHKNIFMGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEV 89
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G
Sbjct: 90 IRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMY-DIYSVVQG 148
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+ +PVD+YVPGCPP EA + G++LLQ+ I +
Sbjct: 149 VDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQERR 185
>gi|253729561|ref|YP_003029744.1| NdhK [Bambusa oldhamii]
gi|246367071|gb|ACS94682.1| NdhK [Bambusa oldhamii]
Length = 253
Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + + T+ + W++ SL + +G +CC +E R+D +R+G+ P+
Sbjct: 35 PLLDQTSSNSVFSTTPNDFSNWSKLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGWVPK 94
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGC 146
+SPRQ+++++ AG T KMA +L R Y Q PEP+YVI+ G+C GG + SYS VRG
Sbjct: 95 SSPRQANLILTAGPETMKMAPSLVRFYKQRPEPKYVIARGACTITGGMFSTDSYSTVRGV 154
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D++ PVD+Y+PGCPP EA+I + L+KKI R
Sbjct: 155 DKLNPVDVYLPGCPPKPEAVIDALTKLRKKISRE 188
>gi|325105666|ref|YP_004275320.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145]
gi|324974514|gb|ADY53498.1| NADH dehydrogenase subunit B [Pedobacter saltans DSM 12145]
Length = 180
Score = 200 bits (508), Expect = 9e-50, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 103/163 (63%), Gaps = 2/163 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D + + + GF T++DQ++ AR+ SL + F +CC +E M YD RF
Sbjct: 3 DIKMANAPAGVEGSGFFATTLDQVIGLARSHSLWPLPFATSCCGIEFMATMGAHYDFSRF 62
Query: 83 GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
G P SPRQ+D+++V GT+ KMA L++VY QM EPR+VI++G+CA+ GG + +YS
Sbjct: 63 GSERPSFSPRQADLLMVMGTIAKKMAPVLKQVYTQMAEPRWVIAVGACASSGGIF-DTYS 121
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
V++G D I+PVD+YVPGCPP E +I G +Q+ ++ + +
Sbjct: 122 VLQGIDEIIPVDVYVPGCPPRPEGIIDGFNKIQELVKNESSRR 164
>gi|94267895|ref|ZP_01291027.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [delta
proteobacterium MLMS-1]
gi|93451814|gb|EAT02564.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [delta
proteobacterium MLMS-1]
Length = 177
Score = 200 bits (508), Expect = 9e-50, Method: Composition-based stats.
Identities = 75/159 (47%), Positives = 106/159 (66%), Gaps = 3/159 (1%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+ D ++ + +D+L+ R SL +TFGLACCA+EMM R+DL+R
Sbjct: 4 LSKDLKQLRQDEHPPVVQFAVLDKLLNLGRANSLWPLTFGLACCAIEMMATGASRFDLDR 63
Query: 82 FGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HY 138
FG R +P+QSDVMIVAGT++ KMA A+ +Y+QMP P++VI+MG+CA GG +
Sbjct: 64 FGMGVFRPAPKQSDVMIVAGTVSKKMAPAVVTLYEQMPHPKWVIAMGNCAISGGPFAFEG 123
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
Y +V G D+IVPVD+Y+PGCPP EALI G+L L++K+
Sbjct: 124 QYGIVEGADKIVPVDVYIPGCPPRPEALIEGLLQLEEKL 162
>gi|318606467|emb|CBY27965.1| NADH-ubiquinone oxidoreductase chain B [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 225
Score = 200 bits (508), Expect = 9e-50, Method: Composition-based stats.
Identities = 73/147 (49%), Positives = 99/147 (67%), Gaps = 2/147 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D
Sbjct: 41 GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y
Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVY 159
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGN 182
+PGCPP EA + +LLLQ+ I +
Sbjct: 160 IPGCPPRPEAYMQALLLLQESIGKERR 186
>gi|182412309|ref|YP_001817375.1| NADH dehydrogenase subunit B [Opitutus terrae PB90-1]
gi|238065012|sp|B1ZRT2|NUOB1_OPITP RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|177839523|gb|ACB73775.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1]
Length = 171
Score = 200 bits (508), Expect = 9e-50, Method: Composition-based stats.
Identities = 76/163 (46%), Positives = 106/163 (65%), Gaps = 2/163 (1%)
Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
V ++ S G +V+ D ++ W RT S+ M GLACCA+E+MQ R+D+
Sbjct: 1 MVSSNTDLTYSSAIEGGIVVSKADAVINWIRTNSMWPMPMGLACCAIELMQVGNGRFDIA 60
Query: 81 RFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFG R SPRQSD MIVAG++T KMA +RR+YDQM P++VI+MG+CA+ GG Y S
Sbjct: 61 RFGAEVMRFSPRQSDCMIVAGSVTYKMAPQIRRIYDQMMSPKWVIAMGACASSGGMYR-S 119
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
Y+ ++G DRI+PVD+Y+ GCPP E ++ ++ LQ KIR
Sbjct: 120 YAHMQGVDRILPVDVYISGCPPRPEGILDALMKLQAKIRTERA 162
>gi|302536169|ref|ZP_07288511.1| NADH dehydrogenase subunit B [Streptomyces sp. C]
gi|302445064|gb|EFL16880.1| NADH dehydrogenase subunit B [Streptomyces sp. C]
Length = 184
Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPAPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151
>gi|296274177|ref|YP_003656808.1| NADH-quinone oxidoreductase subunit B [Arcobacter nitrofigilis DSM
7299]
gi|296098351|gb|ADG94301.1| NADH-quinone oxidoreductase, B subunit [Arcobacter nitrofigilis DSM
7299]
Length = 171
Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 69/155 (44%), Positives = 105/155 (67%), Gaps = 2/155 (1%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RA 88
+ + + T +D+ V WAR+ SL M FG ACC +E M + +YD+ RFG R
Sbjct: 5 AESVLGDSVITTRLDKAVNWARSYSLWPMVFGTACCGIEFMSVAAAKYDISRFGAEVVRF 64
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPRQ+D++I+AGT+T K A L+++YDQM EP++VISMG+CA+ GG ++ +Y+ ++G D+
Sbjct: 65 SPRQADLLIIAGTITYKQAPVLKKIYDQMCEPKWVISMGACASSGG-FYDNYTTLQGVDQ 123
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
I+PVD YV GCPP EA++ I+ +QKK + +
Sbjct: 124 IIPVDEYVSGCPPRPEAVLDAIISIQKKAQNESII 158
>gi|291451958|ref|ZP_06591348.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074]
gi|291354907|gb|EFE81809.1| NADH dehydrogenase subunit NuoB2 [Streptomyces albus J1074]
Length = 214
Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 77/143 (53%), Positives = 103/143 (72%), Gaps = 1/143 (0%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIV 98
+ ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V
Sbjct: 33 PAPMKVVLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFMRLGVIPFAPGPRQADLMVV 92
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
+GT+T+KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPG
Sbjct: 93 SGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPG 152
Query: 159 CPPTAEALIYGILLLQKKIRRVG 181
CPP EAL+ GI+ LQ+KI R
Sbjct: 153 CPPRPEALLQGIIKLQEKIARES 175
>gi|297201624|ref|ZP_06919021.1| NADH dehydrogenase subunit B [Streptomyces sviceus ATCC 29083]
gi|197711005|gb|EDY55039.1| NADH dehydrogenase subunit B [Streptomyces sviceus ATCC 29083]
Length = 184
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 83/152 (54%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQSSK 154
>gi|22125526|ref|NP_668949.1| NADH dehydrogenase subunit B [Yersinia pestis KIM 10]
gi|45442154|ref|NP_993693.1| NADH dehydrogenase subunit B [Yersinia pestis biovar Microtus str.
91001]
gi|51596905|ref|YP_071096.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis IP 32953]
gi|108808041|ref|YP_651957.1| NADH dehydrogenase subunit B [Yersinia pestis Antiqua]
gi|108812311|ref|YP_648078.1| NADH dehydrogenase subunit B [Yersinia pestis Nepal516]
gi|123441677|ref|YP_001005661.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145599244|ref|YP_001163320.1| NADH dehydrogenase subunit B [Yersinia pestis Pestoides F]
gi|149365540|ref|ZP_01887575.1| NADH dehydrogenase I chain B [Yersinia pestis CA88-4125]
gi|162419739|ref|YP_001606303.1| NADH dehydrogenase subunit B [Yersinia pestis Angola]
gi|165925479|ref|ZP_02221311.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937679|ref|ZP_02226241.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008478|ref|ZP_02229376.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213868|ref|ZP_02239903.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167398671|ref|ZP_02304195.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422249|ref|ZP_02314002.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167424429|ref|ZP_02316182.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167470575|ref|ZP_02335279.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis FV-1]
gi|170023802|ref|YP_001720307.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis YPIII]
gi|186895986|ref|YP_001873098.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis PB1/+]
gi|218929640|ref|YP_002347515.1| NADH dehydrogenase subunit B [Yersinia pestis CO92]
gi|229838096|ref|ZP_04458255.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229895295|ref|ZP_04510469.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Pestoides
A]
gi|229898656|ref|ZP_04513801.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
Orientalis str. India 195]
gi|229902655|ref|ZP_04517772.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Nepal516]
gi|238759963|ref|ZP_04621116.1| NADH-quinone oxidoreductase subunit B [Yersinia aldovae ATCC 35236]
gi|238763927|ref|ZP_04624884.1| NADH-quinone oxidoreductase subunit B [Yersinia kristensenii ATCC
33638]
gi|238784999|ref|ZP_04628997.1| NADH-quinone oxidoreductase subunit B [Yersinia bercovieri ATCC
43970]
gi|238794606|ref|ZP_04638213.1| NADH-quinone oxidoreductase subunit B [Yersinia intermedia ATCC
29909]
gi|238798405|ref|ZP_04641886.1| NADH-quinone oxidoreductase subunit B [Yersinia mollaretii ATCC
43969]
gi|270490163|ref|ZP_06207237.1| NADH dehydrogenase subunit B [Yersinia pestis KIM D27]
gi|294504368|ref|YP_003568430.1| NADH dehydrogenase beta subunit [Yersinia pestis Z176003]
gi|332162388|ref|YP_004298965.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|81639043|sp|Q669A1|NUOB_YERPS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|122979538|sp|Q1C6B0|NUOB_YERPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|122980104|sp|Q1CHQ2|NUOB_YERPN RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|123777024|sp|Q7CJ93|NUOB_YERPE RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065222|sp|A1JLG4|NUOB_YERE8 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065224|sp|B2K820|NUOB_YERPB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065225|sp|A9R6L9|NUOB_YERPG RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065226|sp|A4TM35|NUOB_YERPP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065227|sp|B1JGL4|NUOB_YERPY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|21958425|gb|AAM85200.1|AE013766_3 NADH dehydrogenase I chain B [Yersinia pestis KIM 10]
gi|45437018|gb|AAS62570.1| NADH dehydrogenase I chain B [Yersinia pestis biovar Microtus str.
91001]
gi|51590187|emb|CAH21824.1| NADH dehydrogenase I chain B [Yersinia pseudotuberculosis IP 32953]
gi|108775959|gb|ABG18478.1| NADH dehydrogenase I chain B [Yersinia pestis Nepal516]
gi|108779954|gb|ABG14012.1| NADH dehydrogenase I chain B [Yersinia pestis Antiqua]
gi|115348251|emb|CAL21179.1| NADH dehydrogenase I chain B [Yersinia pestis CO92]
gi|122088638|emb|CAL11433.1| NADH dehydrogenase I chain B [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|145210940|gb|ABP40347.1| NADH dehydrogenase I chain B [Yersinia pestis Pestoides F]
gi|149291953|gb|EDM42027.1| NADH dehydrogenase I chain B [Yersinia pestis CA88-4125]
gi|162352554|gb|ABX86502.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis Angola]
gi|165914429|gb|EDR33044.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922588|gb|EDR39739.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992860|gb|EDR45161.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205042|gb|EDR49522.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166958755|gb|EDR55776.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051175|gb|EDR62583.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167056311|gb|EDR66080.1| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169750336|gb|ACA67854.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis
YPIII]
gi|186699012|gb|ACC89641.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis
PB1/+]
gi|229680102|gb|EEO76201.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Nepal516]
gi|229688204|gb|EEO80275.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
Orientalis str. India 195]
gi|229694462|gb|EEO84509.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701781|gb|EEO89806.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Pestoides
A]
gi|238697895|gb|EEP90655.1| NADH-quinone oxidoreductase subunit B [Yersinia kristensenii ATCC
33638]
gi|238701790|gb|EEP94354.1| NADH-quinone oxidoreductase subunit B [Yersinia aldovae ATCC 35236]
gi|238714115|gb|EEQ06129.1| NADH-quinone oxidoreductase subunit B [Yersinia bercovieri ATCC
43970]
gi|238717719|gb|EEQ09554.1| NADH-quinone oxidoreductase subunit B [Yersinia mollaretii ATCC
43969]
gi|238726092|gb|EEQ17639.1| NADH-quinone oxidoreductase subunit B [Yersinia intermedia ATCC
29909]
gi|262362643|gb|ACY59364.1| NADH dehydrogenase beta subunit [Yersinia pestis D106004]
gi|270338667|gb|EFA49444.1| NADH dehydrogenase subunit B [Yersinia pestis KIM D27]
gi|294354827|gb|ADE65168.1| NADH dehydrogenase beta subunit [Yersinia pestis Z176003]
gi|320014608|gb|ADV98179.1| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|325666618|gb|ADZ43262.1| NADH dehydrogenase subunit B [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330860335|emb|CBX70648.1| NADH-quinone oxidoreductase subunit B [Yersinia enterocolitica
W22703]
Length = 225
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 73/147 (49%), Positives = 99/147 (67%), Gaps = 2/147 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D
Sbjct: 41 GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y
Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVY 159
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGN 182
+PGCPP EA + +LLLQ+ I +
Sbjct: 160 IPGCPPRPEAYMQALLLLQESIGKERR 186
>gi|261820793|ref|YP_003258899.1| NADH dehydrogenase subunit B [Pectobacterium wasabiae WPP163]
gi|261604806|gb|ACX87292.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium wasabiae
WPP163]
Length = 224
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 74/169 (43%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQRQETVSDPLEQHVHRSVYMGKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIGKERR 185
>gi|82658723|gb|ABB88530.1| menaquinone oxidoreductase [Streptomyces sp. Eco86]
Length = 184
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 82/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+++V+Q W R S+ TFGLACCA E+M A RYDL RFG R S
Sbjct: 4 EESLPSGFLLSTVEQAAGWVRKASVFPATFGLACCAFELMAAGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
VPVDIY+PGCPP E L+ IL L +KIR
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHEKIR 151
>gi|303248401|ref|ZP_07334661.1| NADH dehydrogenase I, D subunit [Desulfovibrio fructosovorans JJ]
gi|302490199|gb|EFL50117.1| NADH dehydrogenase I, D subunit [Desulfovibrio fructosovorans JJ]
Length = 790
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 76/141 (53%), Positives = 100/141 (70%), Gaps = 2/141 (1%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDVMI 97
+ + D ++ WAR SL FGL+CC VE A PRYD+ R+G R SPRQ+DV+I
Sbjct: 8 VFSPTDHIINWARKNSLWPFFFGLSCCFVEEATAWGPRYDIARYGSEVFRGSPRQADVLI 67
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
V+GT+ K+A R+Y+QM +P++VISMGSC+N GG Y YSVV+G D+I+PVD+Y+P
Sbjct: 68 VSGTMFKKIAPVALRLYEQMSDPKWVISMGSCSNSGGMY-DVYSVVQGSDQILPVDVYIP 126
Query: 158 GCPPTAEALIYGILLLQKKIR 178
GCPP EAL G+LLLQKKI
Sbjct: 127 GCPPRPEALFDGLLLLQKKIA 147
>gi|254391138|ref|ZP_05006345.1| NADH dehydrogenase beta subunit [Streptomyces clavuligerus ATCC
27064]
gi|294814395|ref|ZP_06773038.1| NADH-quinone oxidoreductase subunit B [Streptomyces clavuligerus
ATCC 27064]
gi|326442785|ref|ZP_08217519.1| NADH dehydrogenase subunit B [Streptomyces clavuligerus ATCC 27064]
gi|197704832|gb|EDY50644.1| NADH dehydrogenase beta subunit [Streptomyces clavuligerus ATCC
27064]
gi|294326994|gb|EFG08637.1| NADH-quinone oxidoreductase subunit B [Streptomyces clavuligerus
ATCC 27064]
Length = 184
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 83/150 (55%), Positives = 106/150 (70%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQS 152
>gi|242239967|ref|YP_002988148.1| NADH dehydrogenase subunit B [Dickeya dadantii Ech703]
gi|242132024|gb|ACS86326.1| NADH-quinone oxidoreductase, B subunit [Dickeya dadantii Ech703]
Length = 224
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 103/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V+ + G L ++ +V W R+ SL FGL+CC VEM +
Sbjct: 18 PLQKQEVVNDPLEQHVHRSVFMGNLEHALHNMVNWGRSNSLWPYNFGLSCCYVEMATSFT 77
Query: 75 PRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGSEVIRASPRQADFMVVAGTPFLKMAPVIQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ IR
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIREERR 185
>gi|91773272|ref|YP_565964.1| F420H2 dehydrogenase subunit B [Methanococcoides burtonii DSM 6242]
gi|91712287|gb|ABE52214.1| F420H2 dehydrogenase subunit B [Methanococcoides burtonii DSM 6242]
Length = 184
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 69/180 (38%), Positives = 102/180 (56%), Gaps = 3/180 (1%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLV-TSVDQLVTWARTGSLMWMTFG 61
+ +N +E++ + S IT FL T L+ W R SL ++T
Sbjct: 1 MDELNDNETVENQEGYVEEIPGVITTTSMAITE--FLKKTKAQDLINWGRKNSLWFLTQP 58
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
+ CC VEM+ YD +RFG PR SPR +DVMI++G +T K AL +++QM P+
Sbjct: 59 MGCCGVEMIATGCAHYDTDRFGIIPRNSPRAADVMIISGYVTKKYLPALNTLWEQMAAPK 118
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+VI MG C+ GG ++ SYS V+ D++ P+D+++PGCPP EAL+ G + LQKKI
Sbjct: 119 WVICMGDCSISGGPFYESYSTVQNIDKMFPIDVFIPGCPPRPEALLQGFIELQKKIMAKK 178
>gi|295837078|ref|ZP_06824011.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Streptomyces sp. SPB74]
gi|197697185|gb|EDY44118.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Streptomyces sp. SPB74]
Length = 204
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 81/185 (43%), Positives = 113/185 (61%), Gaps = 5/185 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M +T V + ++ D + + ++ W R SL F
Sbjct: 1 MDVTPVPTTAVP----APVDLPDPTAPPAGTTGVLSRLAPQPMKVVLNWGRRYSLWVFNF 56
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
GLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPE
Sbjct: 57 GLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPE 116
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI +
Sbjct: 117 PKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAK 176
Query: 180 VGNVK 184
+
Sbjct: 177 ESPAE 181
>gi|84494897|ref|ZP_00994016.1| putative NADH dehydrogenase I chain B [Janibacter sp. HTCC2649]
gi|84384390|gb|EAQ00270.1| putative NADH dehydrogenase I chain B [Janibacter sp. HTCC2649]
Length = 212
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 76/143 (53%), Positives = 103/143 (72%), Gaps = 1/143 (0%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIV 98
+ ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V
Sbjct: 22 PKPIRVVLNWGRRYSLWVFNFGLACCAIEFIAASMGRHDFIRLGVIPFAPGPRQADLMVV 81
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
+GT+T+KMA A+RR+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YVPG
Sbjct: 82 SGTVTDKMAPAIRRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLIPVDVYVPG 141
Query: 159 CPPTAEALIYGILLLQKKIRRVG 181
CPP EAL++GI+ LQ++I
Sbjct: 142 CPPRPEALLHGIIKLQEQIAGER 164
>gi|238753753|ref|ZP_04615114.1| NADH-quinone oxidoreductase subunit B [Yersinia ruckeri ATCC 29473]
gi|238707989|gb|EEQ00346.1| NADH-quinone oxidoreductase subunit B [Yersinia ruckeri ATCC 29473]
Length = 225
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 75/170 (44%), Positives = 104/170 (61%), Gaps = 3/170 (1%)
Query: 15 SSCSLEKVD-ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
S E + + + G L ++ +V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQSQETISGDPLEQDIHRSVYMGKLEHAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSF 77
Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
+D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+CAN
Sbjct: 78 TAVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANS 137
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GG Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 138 GGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 186
>gi|229591254|ref|YP_002873373.1| NADH dehydrogenase subunit B [Pseudomonas fluorescens SBW25]
gi|259514679|sp|C3JY82|NUOB_PSEFS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|229363120|emb|CAY50138.1| NADH-quinone oxidoreductase chain B [Pseudomonas fluorescens SBW25]
Length = 224
Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats.
Identities = 75/176 (42%), Positives = 107/176 (60%), Gaps = 7/176 (3%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAV 67
+ + + + + ++ HK + ++ + V W R SL FGL+CC V
Sbjct: 12 APNDQYPIGERETVSDPLEDQV-HKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYV 70
Query: 68 EMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
EM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISM
Sbjct: 71 EMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISM 130
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G++LLQ+ I +
Sbjct: 131 GSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKERR 185
>gi|271962234|ref|YP_003336430.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
gi|270505409|gb|ACZ83687.1| NADH dehydrogenase (quinone) [Streptosporangium roseum DSM 43021]
Length = 173
Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats.
Identities = 77/142 (54%), Positives = 105/142 (73%), Gaps = 1/142 (0%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVMIV 98
+ ++ W R SL FGLACCA+E + +M R+D RFG P A+ PRQ+D+MIV
Sbjct: 17 PKPMRFILNWGRRYSLWAFNFGLACCAIEFIATTMSRHDFIRFGVIPFANGPRQADLMIV 76
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
+GT+T+KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SY V +G D+I+PVD+YVPG
Sbjct: 77 SGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNSGGPYWDSYCVTKGVDQIIPVDVYVPG 136
Query: 159 CPPTAEALIYGILLLQKKIRRV 180
CPP EAL++GI+LLQ+KI
Sbjct: 137 CPPRPEALLHGIMLLQEKIAAE 158
>gi|239980151|ref|ZP_04702675.1| NADH dehydrogenase subunit B [Streptomyces albus J1074]
gi|291452006|ref|ZP_06591396.1| NuoB [Streptomyces albus J1074]
gi|291354955|gb|EFE81857.1| NuoB [Streptomyces albus J1074]
Length = 184
Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats.
Identities = 81/152 (53%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSMFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VPVDIY+PGCPP E L+ I+ L +K++
Sbjct: 123 VPVDIYLPGCPPRPEMLVDAIVKLHQKVQSSK 154
>gi|329938298|ref|ZP_08287749.1| NADH dehydrogenase subunit NuoB2 [Streptomyces griseoaurantiacus
M045]
gi|329302787|gb|EGG46677.1| NADH dehydrogenase subunit NuoB2 [Streptomyces griseoaurantiacus
M045]
Length = 308
Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats.
Identities = 76/137 (55%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+
Sbjct: 75 VLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFMRLGVIPFAPGPRQADLMVVSGTVTD 134
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SY+V +G D+I+PVD+YVPGCPP E
Sbjct: 135 KMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYAVTKGVDQIIPVDVYVPGCPPRPE 194
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GI+ LQ+KI R
Sbjct: 195 ALLQGIIKLQEKIARES 211
>gi|254382442|ref|ZP_04997801.1| NuoB [Streptomyces sp. Mg1]
gi|194341346|gb|EDX22312.1| NuoB [Streptomyces sp. Mg1]
Length = 184
Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats.
Identities = 83/149 (55%), Positives = 105/149 (70%), Gaps = 2/149 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKSSVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPAPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
VPVDIY+PGCPP E L+ IL L KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHHKIQ 151
>gi|86748473|ref|YP_484969.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
HaA2]
gi|123408621|sp|Q2J0F2|NUOB_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|86571501|gb|ABD06058.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
HaA2]
Length = 208
Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats.
Identities = 70/145 (48%), Positives = 101/145 (69%), Gaps = 2/145 (1%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97
L T+++ L W+R SL FGL+CC VE + A P YD RFG RASPRQ+D+++
Sbjct: 26 LFTTLEDLTAWSRKHSLWPFNFGLSCCYVEQVTALTPVYDQARFGAEVIRASPRQADLLV 85
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
V+GT+ +KMA+ L R+Y+QM PR+VI+MG+CA GG Y YSVV+G DR +PVD+Y+P
Sbjct: 86 VSGTVFHKMAAPLLRLYEQMRAPRWVIAMGACACSGGMY-DIYSVVQGVDRFIPVDVYIP 144
Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
GCPP EA++ +++LQ+++
Sbjct: 145 GCPPRPEAMLDALIMLQQQVGSERR 169
>gi|312961687|ref|ZP_07776185.1| NADH-quinone oxidoreductase subunit B [Pseudomonas fluorescens WH6]
gi|311283946|gb|EFQ62529.1| NADH-quinone oxidoreductase subunit B [Pseudomonas fluorescens WH6]
Length = 224
Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats.
Identities = 75/157 (47%), Positives = 101/157 (64%), Gaps = 6/157 (3%)
Query: 31 SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
+ HK + ++ + V W R SL FGL+CC VEM A +D+ RFG
Sbjct: 30 EDQVHKNIYMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEV 89
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+G
Sbjct: 90 IRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMY-DIYSVVQG 148
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+ +PVD+YVPGCPP EA + G++LLQ+ I +
Sbjct: 149 VDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGKERR 185
>gi|254821135|ref|ZP_05226136.1| NADH dehydrogenase subunit B [Mycobacterium intracellulare ATCC
13950]
Length = 184
Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats.
Identities = 75/150 (50%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+
Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L+Y IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLYAILKLHEKIQE 152
>gi|290958259|ref|YP_003489441.1| NADH dehydrogenase subunit NuoB [Streptomyces scabiei 87.22]
gi|260647785|emb|CBG70890.1| NuoB, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
Length = 184
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 83/149 (55%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+Q W R S+ TFGLACCA+EMM RYDL RFG R S
Sbjct: 4 EEKLPSGFLLTTVEQAAGWVRKASVFPATFGLACCAIEMMTTGAGRYDLARFGMEVFRGS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMDAILKLHQKIQ 151
>gi|319789707|ref|YP_004151340.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans
HB-1]
gi|317114209|gb|ADU96699.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans
HB-1]
Length = 157
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+G +T + L+ W R G+L + F ACC +EMM A+ RYD +RFG R +PRQ D
Sbjct: 4 REGVFLTKLQDLINWGRKGALWPLAFATACCGIEMMAAAASRYDFDRFGVIFRNTPRQCD 63
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
++I+ GT++ KMA ++R++DQMP+P++ I++GSCA G + +YS +RG D IVPVD+
Sbjct: 64 LLIMCGTISRKMAPIIKRLWDQMPDPKWAIAIGSCAISGNIFQ-TYSTLRGLDCIVPVDV 122
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNV 183
YVPGC P EA +++LQ+KI+R +
Sbjct: 123 YVPGCAPKPEAFYEALIMLQEKIKRDKPI 151
>gi|256425967|ref|YP_003126620.1| NADH dehydrogenase subunit B [Chitinophaga pinensis DSM 2588]
gi|256040875|gb|ACU64419.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM
2588]
Length = 187
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 102/158 (64%), Gaps = 2/158 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ + +GF T+ DQ++ AR S+ + F +CC +E M YD+ RFG
Sbjct: 15 AVPEGYSGEGFFATTFDQVIGLARKNSIWPLPFATSCCGIEFMATMASTYDMSRFGSERM 74
Query: 88 A-SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
A +PRQ D+++V GT++ KMA LR+VY QM EPR+V+++G+CA+ GG + +YSV++G
Sbjct: 75 AFTPRQCDLLMVMGTISKKMAPVLRQVYLQMAEPRWVVAVGACASSGGVF-DTYSVLQGI 133
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
D+++PVD+YVPGCPP EA+I G + +Q + + +
Sbjct: 134 DQVIPVDVYVPGCPPRPEAIIDGFMRVQDLVGQESLRR 171
>gi|318056637|ref|ZP_07975360.1| NADH dehydrogenase I chain B [Streptomyces sp. SA3_actG]
gi|318080916|ref|ZP_07988248.1| NADH dehydrogenase I chain B [Streptomyces sp. SA3_actF]
Length = 204
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 81/185 (43%), Positives = 112/185 (60%), Gaps = 5/185 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M +T V + ++ D + + ++ W R SL F
Sbjct: 1 MDVTPVPTTAVP----APVDLPDPTAPPAGTTGVLSRLAPQPMKVVLNWGRRYSLWVFNF 56
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
GLACCA+E + ASM R+D R G P PRQ+D+M+V+GT+T+KMA A++R+Y+QMPE
Sbjct: 57 GLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPAVKRLYEQMPE 116
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P+YVIS G+C+N GG Y SYSV +G D+I+PVD+YVPGCPP EAL+ GIL LQ+KI
Sbjct: 117 PKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIAH 176
Query: 180 VGNVK 184
+
Sbjct: 177 ESPAE 181
>gi|41409300|ref|NP_962136.1| NADH dehydrogenase subunit B [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118465722|ref|YP_883186.1| NADH dehydrogenase subunit B [Mycobacterium avium 104]
gi|254776456|ref|ZP_05217972.1| NADH dehydrogenase subunit B [Mycobacterium avium subsp. avium ATCC
25291]
gi|296169191|ref|ZP_06850844.1| NADH-quinone oxidoreductase subunit B [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|81571071|sp|Q73V14|NUOB_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065174|sp|A0QJU8|NUOB_MYCA1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|41398120|gb|AAS05750.1| NuoB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118167009|gb|ABK67906.1| NADH-quinone oxidoreductase chain b [Mycobacterium avium 104]
gi|295896089|gb|EFG75756.1| NADH-quinone oxidoreductase subunit B [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 184
Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats.
Identities = 75/150 (50%), Positives = 110/150 (73%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+
Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L+Y IL L +KI++
Sbjct: 123 VPVDIYLPGCPPRPEMLLYAILKLHEKIQQ 152
>gi|298246351|ref|ZP_06970157.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM
44963]
gi|297553832|gb|EFH87697.1| NADH-quinone oxidoreductase, B subunit [Ktedonobacter racemifer DSM
44963]
Length = 200
Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 83/180 (46%), Positives = 124/180 (68%), Gaps = 7/180 (3%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
MG+T + + + ++ + ++ + + G L T V +++ W+R+ SL F
Sbjct: 1 MGITNPWEPVQTYSNTQTPRELP-----MHQKDGSFGVLTTQVSKILDWSRSSSLWPALF 55
Query: 61 GLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
GLACCA+EMM S R+DL RFG RASPRQ+D+MIVAG + KMA LR++YDQMPE
Sbjct: 56 GLACCAIEMMSTSASRFDLARFGAEVYRASPRQADLMIVAGRCSVKMAPVLRQIYDQMPE 115
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++VISMG+CA+ GG ++ +Y++V+G D+IVPVD+++PGCPPT + L++G LQ+KIR
Sbjct: 116 PKWVISMGACASCGGVFN-NYAIVQGVDKIVPVDVFIPGCPPTPDMLLFGFNELQRKIRE 174
>gi|183220687|ref|YP_001838683.1| NADH dehydrogenase subunit B [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189910788|ref|YP_001962343.1| NADH dehydrogenase subunit B [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|238065164|sp|B0SFT5|NUOB_LEPBA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065165|sp|B0SP83|NUOB_LEPBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|167775464|gb|ABZ93765.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167779109|gb|ABZ97407.1| NADH-quinone oxidoreductase chain B [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
Length = 186
Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 70/161 (43%), Positives = 108/161 (67%), Gaps = 8/161 (4%)
Query: 28 RISSEITHKG------FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
++ ++ G F V ++D +V W ++ SL F ACC +E M + YD+ R
Sbjct: 2 GLTETLSKPGEMFGDMFQVATLDNVVQWGQSFSLWPYPFATACCGIEYMSTACADYDIAR 61
Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
FG P SPRQ+D+++V GT+T KMA LR++YDQ+ EP++VIS+G+CA+ GG + ++Y
Sbjct: 62 FGAERPSFSPRQADMILVLGTITYKMAPVLRQIYDQLAEPKFVISVGACASSGGMF-HTY 120
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
V++G DRI+PVD+YVPGCPP EA++ ++ LQKK++ G
Sbjct: 121 GVLQGVDRILPVDVYVPGCPPRPEAILDALVKLQKKVQSQG 161
>gi|312890395|ref|ZP_07749932.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603]
gi|311297165|gb|EFQ74297.1| NADH dehydrogenase subunit B [Mucilaginibacter paludis DSM 18603]
Length = 180
Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D + GF TS+D+ V AR+ SL + F +CC +E M YDL RF
Sbjct: 3 DIQIVEAPPGVEGSGFFATSLDKAVGLARSYSLWPLPFATSCCGIEFMATMGSHYDLSRF 62
Query: 83 GFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
G SPRQ+D+++V GT+ KMA LR+VY QM EPR+V+++G+CA+ GG + +YS
Sbjct: 63 GAERLSFSPRQADLLMVMGTIAKKMAPVLRQVYLQMAEPRWVMAVGACASSGGIF-DTYS 121
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
V++G D I+PVD+YVPGCPP EA+I G + +QK ++
Sbjct: 122 VLQGIDEIIPVDVYVPGCPPRPEAIIDGFMNIQKLVQTES 161
>gi|255037834|ref|YP_003088455.1| NADH dehydrogenase subunit B [Dyadobacter fermentans DSM 18053]
gi|254950590|gb|ACT95290.1| NADH-quinone oxidoreductase, B subunit [Dyadobacter fermentans DSM
18053]
Length = 180
Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 68/163 (41%), Positives = 103/163 (63%), Gaps = 7/163 (4%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
+ GF TS D+ + AR+ SL + F +CC +E M YD+ RFG P
Sbjct: 8 EAPQGHSGSGFFATSFDEAIGLARSYSLWPLPFATSCCGIEFMATMGAHYDISRFGSERP 67
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
SPRQ+D+++V GT+ KMA +++VY QM EPR+V+++G+CA+ GG + +YSV++G
Sbjct: 68 SFSPRQADLLMVMGTIAKKMAPVVKQVYLQMAEPRWVMAVGACASSGGIF-DTYSVLQGI 126
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQ-----KKIRRVGNVK 184
DRI+PVD+YVPGCPP E +I G++ +Q +K+RR +
Sbjct: 127 DRIIPVDVYVPGCPPRPEQIIDGLMQIQYLAQNEKLRRRNTDE 169
>gi|126640811|ref|YP_001083795.1| NADH dehydrogenase I chain B [Acinetobacter baumannii ATCC 17978]
Length = 189
Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 75/148 (50%), Positives = 98/148 (66%), Gaps = 6/148 (4%)
Query: 40 VTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSD 94
+T ++ + V W R SL FG +CC VE +DL RFG RASPRQ+D
Sbjct: 1 MTRLEDVLHTAVNWGRKNSLWPFNFGTSCCYVEYATTLTGVHDLSRFGAEVIRASPRQAD 60
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+I+PVD+
Sbjct: 61 LMIVAGTCFVKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKIIPVDV 119
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182
YVPGCPP EALI ++LLQ +I+
Sbjct: 120 YVPGCPPRPEALIQALMLLQDQIQLERR 147
>gi|134299891|ref|YP_001113387.1| NADH-quinone oxidoreductase subunit B [Desulfotomaculum reducens
MI-1]
gi|218527989|sp|A4J659|NUOB_DESRM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|134052591|gb|ABO50562.1| NADH dehydrogenase subunit B [Desulfotomaculum reducens MI-1]
Length = 196
Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 79/164 (48%), Positives = 112/164 (68%), Gaps = 7/164 (4%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRYDLER 81
A ++ ++ V +++L+ AR SL M FGLACCA+E +M A+M R+DL R
Sbjct: 33 PAVIGEVARTVS-----VGPLEKLLNLARANSLWPMGFGLACCAIEGLMAANMARFDLAR 87
Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
FG+ RASPRQ+DVM+V GT+T K A + R+Y+QM EP+YVI+MGSCA GG + SY
Sbjct: 88 FGYEVMRASPRQADVMLVCGTVTKKAAPFVVRLYEQMAEPKYVIAMGSCAISGGPFVDSY 147
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
SVV G D+++PVD+Y+PGC P +A+I+G + L++KI VK
Sbjct: 148 SVVPGVDKLIPVDVYIPGCAPRPDAVIHGFMKLKEKIINPEVVK 191
>gi|145225061|ref|YP_001135739.1| NADH dehydrogenase subunit B [Mycobacterium gilvum PYR-GCK]
gi|315445430|ref|YP_004078309.1| NADH dehydrogenase subunit B [Mycobacterium sp. Spyr1]
gi|238065177|sp|A4TDB9|NUOB_MYCGI RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|145217547|gb|ABP46951.1| NADH dehydrogenase subunit B [Mycobacterium gilvum PYR-GCK]
gi|315263733|gb|ADU00475.1| NADH dehydrogenase subunit B [Mycobacterium sp. Spyr1]
Length = 184
Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 76/150 (50%), Positives = 110/150 (73%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+++V+++ + R GSL TFGLACCA+EMM + PR+D+ RFG A+
Sbjct: 4 EEKLPGGILLSTVEKVAGYVRKGSLWPATFGLACCAIEMMATAGPRFDISRFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y+VV+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L++ IL L KI++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHDKIQQ 152
>gi|168700846|ref|ZP_02733123.1| NADH-quinone oxidoreductase, B subunit [Gemmata obscuriglobus UQM
2246]
Length = 201
Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 73/147 (49%), Positives = 100/147 (68%), Gaps = 2/147 (1%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
F++ +D L AR SL M F ACC +E+M + RYD+ RFG R SPRQ DVM
Sbjct: 10 FMIAPLDYLANMARKHSLWPMPFATACCGIELMATASSRYDIARFGSEAMRFSPRQCDVM 69
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAG + KM ++R++ QMPEP++ ISMG+CA+ GG + +Y+VV+G DR +PVD+YV
Sbjct: 70 IVAGRVAMKMVPVMQRIWLQMPEPKWCISMGACASSGGVF-DTYAVVQGIDRFIPVDVYV 128
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGNV 183
PGCPP E LI +L LQ+KI++ G +
Sbjct: 129 PGCPPRPEQLIRAVLDLQEKIQKTGTI 155
>gi|149034570|gb|EDL89307.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_c
[Rattus norvegicus]
Length = 132
Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 106/127 (83%), Positives = 116/127 (91%)
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM
Sbjct: 1 MTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 60
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
PEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI
Sbjct: 61 PEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKI 120
Query: 178 RRVGNVK 184
+R +K
Sbjct: 121 KREQKLK 127
>gi|149374626|ref|ZP_01892400.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893]
gi|149361329|gb|EDM49779.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893]
Length = 225
Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats.
Identities = 77/172 (44%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ E + R G L ++ V W R SL FGL+CC VEM
Sbjct: 16 TQYPIRQQEPSEDPVKRQLERNVFTGKLSDVLNSAVNWGRKNSLWPYNFGLSCCYVEMTT 75
Query: 72 ASMPRYDLERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
A +D+ RFG RASPRQ+D M++AGT KMA ++++YDQM EP++VISMGSCA
Sbjct: 76 AFTAPHDIARFGSEVIRASPRQADFMVIAGTCFIKMAPVIQQLYDQMLEPKWVISMGSCA 135
Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
N GG Y YSVV+G D+ +PVD+YVPGCPP EA + G+ LLQ I+
Sbjct: 136 NSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLQLLQDSIQEERR 186
>gi|304312241|ref|YP_003811839.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1]
gi|301797974|emb|CBL46196.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1]
Length = 222
Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats.
Identities = 70/152 (46%), Positives = 105/152 (69%), Gaps = 2/152 (1%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
E + ++ ++++V+W+++ SL FGL+CC VEM ++DL RFG R SP
Sbjct: 32 EALRQNVVMGKLEEMVSWSQSNSLWPFNFGLSCCYVEMATTFTSQFDLARFGAEVIRGSP 91
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D+++++GT+ KMA L R+Y+Q+ EPR+VISMGSCAN GG Y YSVV+G D+ +
Sbjct: 92 RQADLIVISGTVFRKMAPVLERLYEQLIEPRWVISMGSCANSGGMY-DIYSVVQGVDKFL 150
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
PVD+YV GCPP +AL+ G++LLQ +I+
Sbjct: 151 PVDVYVQGCPPRPDALLEGLILLQNQIKSQRR 182
>gi|159036128|ref|YP_001535381.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola
CNS-205]
gi|238065019|sp|A8M069|NUOB1_SALAI RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|157914963|gb|ABV96390.1| NADH-quinone oxidoreductase, B subunit [Salinispora arenicola
CNS-205]
Length = 188
Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats.
Identities = 79/146 (54%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVM 96
L + ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M
Sbjct: 6 VLGEPIRFVLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLM 65
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
+V+GT+T+KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YV
Sbjct: 66 VVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYV 125
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGN 182
PGCPP EAL++GIL LQ+KI G
Sbjct: 126 PGCPPRPEALLHGILRLQEKIAAEGA 151
>gi|158260365|dbj|BAF82360.1| unnamed protein product [Homo sapiens]
Length = 206
Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats.
Identities = 103/162 (63%), Positives = 119/162 (73%), Gaps = 4/162 (2%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V+Q + + S + + + + ++V +D LV WAR SL MTFGLAC
Sbjct: 29 GVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 88
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+
Sbjct: 89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 148
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG----CPPT 162
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PG PPT
Sbjct: 149 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGRAGTAPPT 190
>gi|50121950|ref|YP_051117.1| NADH dehydrogenase subunit B [Pectobacterium atrosepticum SCRI1043]
gi|227326166|ref|ZP_03830190.1| NADH dehydrogenase subunit B [Pectobacterium carotovorum subsp.
carotovorum WPP14]
gi|253689147|ref|YP_003018337.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|6647661|sp|O85274|NUOB_PECCC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|81644464|sp|Q6D2R8|NUOB_ERWCT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|259514671|sp|C6DA45|NUOB_PECCP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|3273736|gb|AAC38641.1| NADH dehydrogenase chain B [Pectobacterium carotovorum subsp.
carotovorum]
gi|49612476|emb|CAG75926.1| NADH-quinone oxidoreductase chain B [Pectobacterium atrosepticum
SCRI1043]
gi|251755725|gb|ACT13801.1| NADH-quinone oxidoreductase, B subunit [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 224
Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats.
Identities = 74/169 (43%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ V W R SL FGL+CC VEM+ +
Sbjct: 18 PLQRQEIVSDPLEQHVHRSVYMGKLEHALHDTVNWGRQNSLWPYNFGLSCCYVEMVTSFT 77
Query: 75 PRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIGKERR 185
>gi|256390056|ref|YP_003111620.1| NADH-quinone oxidoreductase subunit beta [Catenulispora acidiphila
DSM 44928]
gi|256356282|gb|ACU69779.1| NADH-quinone oxidoreductase, B subunit [Catenulispora acidiphila
DSM 44928]
Length = 291
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 74/142 (52%), Positives = 100/142 (70%), Gaps = 1/142 (0%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIV 98
+ ++ W R SL FGLACCA+E + SM R+D R G P PRQ+D+M+V
Sbjct: 35 PAPMRVVLNWGRRYSLWVFNFGLACCAIEFIATSMARHDFIRLGVIPFAPGPRQADLMVV 94
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
+GT+++KMA A++R+YDQMPEP+YVIS GSC+N GG Y SY V +G D+++PVD+YVPG
Sbjct: 95 SGTVSDKMAPAVKRLYDQMPEPKYVISFGSCSNCGGPYWDSYCVTKGVDQVIPVDVYVPG 154
Query: 159 CPPTAEALIYGILLLQKKIRRV 180
CPP EAL+ GI+ LQ+KI
Sbjct: 155 CPPRPEALLQGIIKLQEKIAAE 176
>gi|226306213|ref|YP_002766173.1| NADH-quinone oxidoreductase chain B [Rhodococcus erythropolis PR4]
gi|229490898|ref|ZP_04384733.1| NADH-quinone oxidoreductase subunit b [Rhodococcus erythropolis
SK121]
gi|259514682|sp|C0ZYJ9|NUOB_RHOE4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|226185330|dbj|BAH33434.1| NADH-quinone oxidoreductase chain B [Rhodococcus erythropolis PR4]
gi|229322288|gb|EEN88074.1| NADH-quinone oxidoreductase subunit b [Rhodococcus erythropolis
SK121]
Length = 184
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 81/150 (54%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+ L +AR GSL TFGLACCA+EMM + R+DL RFG RAS
Sbjct: 4 EEKLPSGFLLTTVEGLAGYARKGSLWPATFGLACCAIEMMATTSGRFDLARFGMEAFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D++IVAG ++ KM LR+VYDQM EP++V++MG CA+ GG ++ +Y+VV+G D I
Sbjct: 64 PRQADLLIVAGRVSQKMGPVLRQVYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L+ I+ L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAIIELHRKIQE 152
>gi|51893915|ref|YP_076606.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM
14863]
gi|81610392|sp|Q67KN6|NUOB2_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|51857604|dbj|BAD41762.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM
14863]
Length = 182
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 73/175 (41%), Positives = 111/175 (63%), Gaps = 5/175 (2%)
Query: 13 GQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVT----WARTGSLMWMTFGLACCAVE 68
Q+ L+ ++ + ++ ++ + + ++ W S + FG+ACCA+E
Sbjct: 2 SQARHELDWLNDEVVVSEIDVVNENVIAGKLPDVIKKVLGWGYGNSTWPLGFGIACCAIE 61
Query: 69 MMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
MM A +YD+ RFG R SPRQ+DVMIVAGT+ KMA +RR+YDQM EP++VI+MG
Sbjct: 62 MMAACSSKYDIARFGSEAMRMSPRQADVMIVAGTVNEKMAVVVRRLYDQMSEPKFVIAMG 121
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
+CA+ GG Y +Y+VV G ++VPVD+YVPGCPP EAL+ G++ +Q+ I+
Sbjct: 122 ACASNGGPYWDTYNVVDGVHKVVPVDVYVPGCPPRPEALLQGLMEIQEMIKTGKR 176
>gi|322369187|ref|ZP_08043752.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus
paucihalophilus DX253]
gi|320550919|gb|EFW92568.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus
paucihalophilus DX253]
Length = 211
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 75/165 (45%), Positives = 114/165 (69%), Gaps = 2/165 (1%)
Query: 20 EKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
E VD F+ ++ F++T D+ + W R S+ + FG+ACC++EMM ++D
Sbjct: 3 EGVDDRFNSKLREAFGASPFILTKFDKFMNWVRGSSMFMLQFGIACCSIEMMHTYAVKHD 62
Query: 79 LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
L+RFG PRASPRQ+DVMIV GT+ +K A ++RVYDQMPEP++V++MGSCA GG +
Sbjct: 63 LDRFGSGVPRASPRQADVMIVPGTVVSKFAPRMKRVYDQMPEPKFVVNMGSCAISGGPFQ 122
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
Y+V++G + ++P+DI+VPGCPP EAL+YG++ LQ+++
Sbjct: 123 EGYNVIKGAEEVIPIDIHVPGCPPRPEALVYGVVKLQERVANGET 167
>gi|330830046|ref|YP_004392998.1| NADH-quinone oxidoreductase subunit B [Aeromonas veronii B565]
gi|328805182|gb|AEB50381.1| NADH-quinone oxidoreductase subunit B [Aeromonas veronii B565]
Length = 224
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
+ + VD ++ ++ G L + V W R SL FG++CC VEM
Sbjct: 14 VERYPQEQRQTVDDPLAQEATRGIMMGRLEEVLQDTVNWGRKNSLWPYNFGISCCYVEMC 73
Query: 71 QASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+Q+ EP++VISMG+C
Sbjct: 74 TAFTSPHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEPKWVISMGAC 133
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I +
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSIGKERR 185
>gi|262200419|ref|YP_003271627.1| NADH-quinone oxidoreductase subunit B [Gordonia bronchialis DSM
43247]
gi|262083766|gb|ACY19734.1| NADH-quinone oxidoreductase, B subunit [Gordonia bronchialis DSM
43247]
Length = 184
Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats.
Identities = 80/150 (53%), Positives = 110/150 (73%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+++V++L + R GSL TFGLACCA+EMM + RYDL RFG RAS
Sbjct: 4 EERLPSGFLLSTVEELAGFMRKGSLWPATFGLACCAIEMMATTSGRYDLARFGMEAFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L+ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILKLHEKIQE 152
>gi|332662314|ref|YP_004445102.1| NAD(P)H-quinone oxidoreductase subunit K [Haliscomenobacter
hydrossis DSM 1100]
gi|332331128|gb|AEE48229.1| NAD(P)H-quinone oxidoreductase subunit K [Haliscomenobacter
hydrossis DSM 1100]
Length = 179
Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 100/160 (62%), Gaps = 2/160 (1%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
T +GF TS D+ + AR S+ + F +CC +E M YDL RFG
Sbjct: 5 LVESPEGHTGQGFFATSFDKAIGLARANSIWPLPFATSCCGIEFMATMGAHYDLARFGSE 64
Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
SPRQ+D+++V GT+ KM L++VY QM EPR+V+S+G+CA GG + +YSV++
Sbjct: 65 RLSFSPRQADLLMVMGTIAKKMGPVLKQVYLQMAEPRWVLSVGACACSGGIF-DTYSVLQ 123
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
G D+++PVD+YVPGCPPT EA+I G++ +Q+ ++ +
Sbjct: 124 GIDKVIPVDVYVPGCPPTPEAIIDGVMKIQELVKNESLRR 163
>gi|317048938|ref|YP_004116586.1| NADH-quinone oxidoreductase subunit B [Pantoea sp. At-9b]
gi|316950555|gb|ADU70030.1| NADH-quinone oxidoreductase, B subunit [Pantoea sp. At-9b]
Length = 225
Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats.
Identities = 74/169 (43%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R SL FGL+CC VEM +
Sbjct: 19 PLQKQEIVADPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFT 78
Query: 75 PRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M++AGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 79 AVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSG 138
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ I +
Sbjct: 139 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLRESIGKERR 186
>gi|329296020|ref|ZP_08253356.1| NADH dehydrogenase subunit B [Plautia stali symbiont]
Length = 225
Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats.
Identities = 75/169 (44%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ +V W R SL FGL+CC VEM +
Sbjct: 19 PLQKQEIVTDPLEQHVHRSVYMGKLEHALHDMVNWGRKNSLWPYNFGLSCCYVEMTTSFT 78
Query: 75 PRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M++AGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 79 AVHDVARFGAEVMRASPRQADFMVIAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSG 138
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL+K I +
Sbjct: 139 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLRKSIGKERR 186
>gi|332669450|ref|YP_004452458.1| NADH-quinone oxidoreductase subunit B [Cellulomonas fimi ATCC 484]
gi|332338488|gb|AEE45071.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas fimi ATCC 484]
Length = 183
Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats.
Identities = 84/150 (56%), Positives = 110/150 (73%), Gaps = 2/150 (1%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
E GFL+T+V+ LV + R GSL +TFGLACCA+EMM A PRYDL RFG RASP
Sbjct: 4 EEAPSGFLLTTVEDLVGYFRKGSLWPVTFGLACCAIEMMAAGAPRYDLSRFGMEVFRASP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D+MIVAG ++ KMA +R+VYDQM P++V+SMG CA+ GG ++ +Y++V+G D +V
Sbjct: 64 RQADLMIVAGRVSQKMAPVVRQVYDQMSAPKWVLSMGVCASSGGMFN-NYAIVQGVDHVV 122
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
PVDIY+PGCPP E LI IL L +I+
Sbjct: 123 PVDIYLPGCPPRPEMLINAILTLHDQIQNE 152
>gi|271501267|ref|YP_003334292.1| NADH-quinone oxidoreductase subunit B [Dickeya dadantii Ech586]
gi|307131813|ref|YP_003883829.1| NADH:ubiquinone oxidoreductase subunit B [Dickeya dadantii 3937]
gi|270344822|gb|ACZ77587.1| NADH-quinone oxidoreductase, B subunit [Dickeya dadantii Ech586]
gi|306529342|gb|ADM99272.1| NADH:ubiquinone oxidoreductase, chain B [Dickeya dadantii 3937]
Length = 224
Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats.
Identities = 75/169 (44%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L S+ +V W R+ SL FGL+CC VEM +
Sbjct: 18 PLQKQEIVSDPLEQHVNRSVFMGNLEQSLHSMVNWGRSNSLWPYNFGLSCCYVEMATSFT 77
Query: 75 PRYDLERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM P++VISMG+CAN G
Sbjct: 78 SVHDVARFGSEVIRASPRQADFMVVAGTPFLKMAPVIQRLYDQMLAPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIGKERR 185
>gi|311744393|ref|ZP_07718195.1| NADH-quinone oxidoreductase subunit B [Aeromicrobium marinum DSM
15272]
gi|311312359|gb|EFQ82274.1| NADH-quinone oxidoreductase subunit B [Aeromicrobium marinum DSM
15272]
Length = 184
Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats.
Identities = 78/149 (52%), Positives = 104/149 (69%), Gaps = 2/149 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+++V+ L + R S TFGLACCA+EMM PRYD RFG R S
Sbjct: 4 EEKLPSGVLLSTVEDLAGYFRKASFWPATFGLACCAIEMMTFGAPRYDSSRFGMEVFRPS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++NKMA LR++YDQM EP+YV++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSNKMAPVLRQIYDQMAEPKYVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
VPVD+Y+PGCPP E LI IL L KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLIDAILKLHDKIQ 151
>gi|322370548|ref|ZP_08045106.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus
paucihalophilus DX253]
gi|320549965|gb|EFW91621.1| NADH-quinone oxidoreductase, B subunit [Haladaptatus
paucihalophilus DX253]
Length = 220
Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats.
Identities = 77/162 (47%), Positives = 112/162 (69%), Gaps = 2/162 (1%)
Query: 20 EKVDADF-SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
E++ F S++ + F++T D + W R S+ + FG+ACC++EMM ++D
Sbjct: 12 EELPGRFDSKLREALGTSPFILTKFDAFMNWVRGSSMFMLQFGIACCSIEMMHTYAVKHD 71
Query: 79 LERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH 137
L+RFG PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP++V+SMGSC GG +
Sbjct: 72 LDRFGAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSCTCSGGPFQ 131
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
Y+V++G + ++PVDI+VPGCPP EALIYGI LQ++I
Sbjct: 132 QGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGIAKLQERIAH 173
>gi|311896699|dbj|BAJ29107.1| putative NADH-quinone oxidoreductase subunit B [Kitasatospora setae
KM-6054]
Length = 209
Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats.
Identities = 79/144 (54%), Positives = 103/144 (71%), Gaps = 1/144 (0%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAG 100
V ++ W R SL FGLACCA+E + ASM ++D R G P PRQ+D+MIV+G
Sbjct: 44 PVKVVLNWGRRYSLWCFNFGLACCAIEFIAASMAKHDFIRMGVIPFAPGPRQADLMIVSG 103
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
T+T+KMA A++R+Y+QMPEP+YVIS G+CAN GG Y SYSV +G D+I+PVD+YVPGCP
Sbjct: 104 TVTDKMAPAVKRLYEQMPEPKYVISFGACANSGGPYWDSYSVTKGVDQIIPVDVYVPGCP 163
Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
P EAL+ GIL LQ+KI +
Sbjct: 164 PRPEALLQGILKLQEKIAAEDVPQ 187
>gi|120402882|ref|YP_952711.1| NADH dehydrogenase subunit B [Mycobacterium vanbaalenii PYR-1]
gi|238065183|sp|A1T6A5|NUOB_MYCVP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|119955700|gb|ABM12705.1| NADH dehydrogenase subunit B [Mycobacterium vanbaalenii PYR-1]
Length = 184
Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats.
Identities = 76/150 (50%), Positives = 110/150 (73%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+++V+++ + R GSL TFGLACCA+EMM + PR+D+ RFG A+
Sbjct: 4 EERLPGGILLSTVEKVAGYVRKGSLWPATFGLACCAIEMMATAGPRFDISRFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y+VV+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L++ IL L KI++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHDKIQQ 152
>gi|145298722|ref|YP_001141563.1| NADH dehydrogenase subunit B [Aeromonas salmonicida subsp.
salmonicida A449]
gi|238065069|sp|A4SLP3|NUOB_AERS4 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|142851494|gb|ABO89815.1| NADH dehydrogenase I, B subunit [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 224
Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
+ + VD ++ ++ G L + V W R SL FG++CC VEM
Sbjct: 14 VERYPQEQSQTVDDPLAQDATRGIMMGRLEEVLQDTVNWGRKNSLWPYNFGISCCYVEMC 73
Query: 71 QASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+Q+ EP++VISMG+C
Sbjct: 74 TAFTSPHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEPKWVISMGAC 133
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I +
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSIGKERR 185
>gi|85059578|ref|YP_455280.1| NADH dehydrogenase subunit B [Sodalis glossinidius str.
'morsitans']
gi|123519200|sp|Q2NSK0|NUOB_SODGM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|84780098|dbj|BAE74875.1| NADH dehydrogenase I subunit B [Sodalis glossinidius str.
'morsitans']
Length = 224
Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats.
Identities = 76/169 (44%), Positives = 101/169 (59%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L ++ V W R SL FGL+CC VEM +
Sbjct: 18 PLQKQEIVADPLEQHVHRSVYLGKLERALHNAVNWGRGNSLWPYNFGLSCCYVEMTTSFT 77
Query: 75 PRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM EP++VISMG+CAN G
Sbjct: 78 AVHDVARFGSEVIRASPRQADFMVVAGTPFTKMAPVIQRLYDQMLEPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA I +LLL++ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYIQALLLLKESIGKERR 185
>gi|238751247|ref|ZP_04612741.1| NADH-quinone oxidoreductase subunit B [Yersinia rohdei ATCC 43380]
gi|238788653|ref|ZP_04632445.1| NADH-quinone oxidoreductase subunit B [Yersinia frederiksenii ATCC
33641]
gi|238710521|gb|EEQ02745.1| NADH-quinone oxidoreductase subunit B [Yersinia rohdei ATCC 43380]
gi|238723248|gb|EEQ14896.1| NADH-quinone oxidoreductase subunit B [Yersinia frederiksenii ATCC
33641]
Length = 186
Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats.
Identities = 73/147 (49%), Positives = 99/147 (67%), Gaps = 2/147 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D
Sbjct: 2 GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 61
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y
Sbjct: 62 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVY 120
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGN 182
+PGCPP EA + +LLLQ+ I +
Sbjct: 121 IPGCPPRPEAYMQALLLLQESIGKERR 147
>gi|169629221|ref|YP_001702870.1| NADH dehydrogenase subunit B [Mycobacterium abscessus ATCC 19977]
gi|238065175|sp|B1MPG5|NUOB_MYCA9 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|169241188|emb|CAM62216.1| NADH-quinone oxidoreductase, B subunit NuoB [Mycobacterium
abscessus]
Length = 184
Score = 198 bits (503), Expect = 4e-49, Method: Composition-based stats.
Identities = 77/150 (51%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E GFL+++V+ L + R GSL TFGLACCA+EMM + PR+D+ RFG A+
Sbjct: 4 EEKLPSGFLLSTVETLAGYVRKGSLWPATFGLACCAIEMMSTAGPRFDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L++ IL L +KI
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIAH 152
>gi|301058551|ref|ZP_07199556.1| NADH dehydrogenase I subunit B [delta proteobacterium NaphS2]
gi|300447283|gb|EFK11043.1| NADH dehydrogenase I subunit B [delta proteobacterium NaphS2]
Length = 210
Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats.
Identities = 72/164 (43%), Positives = 103/164 (62%), Gaps = 2/164 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ + ++T + ++ W+R SL FGL+CC VEMM A RYD+
Sbjct: 9 DASPRPGDGTLEQAVKSSVILTRLQDMLAWSRKHSLWPFGFGLSCCFVEMMTAITSRYDI 68
Query: 80 ERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG RASPR++D++I+AGT+ KM ++R+Y+QM PR+VISMGSCAN GG +
Sbjct: 69 SRFGAEVVRASPREADMIIIAGTMFVKMVPVVKRLYEQMMAPRWVISMGSCANSGGMF-D 127
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
YSVV+G D+ +PVD+YVPGCPP+ A + G+ LLQ+K+
Sbjct: 128 IYSVVQGVDQFLPVDVYVPGCPPSPMAFMEGLTLLQEKVATEKR 171
>gi|94677027|ref|YP_588824.1| NADH dehydrogenase subunit B [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|238055242|sp|Q1LT90|NUOB_BAUCH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|94220177|gb|ABF14336.1| NADH-quinone oxidoreductase, B subunit [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
Length = 224
Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats.
Identities = 81/186 (43%), Positives = 110/186 (59%), Gaps = 5/186 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMW 57
M T S ++ SL++ D+ I + G L + +V W R SL
Sbjct: 1 MNYTLTRILSNSKENRKSLQEDDSATLLIEQHVNSNIYLGKLKHILKSIVKWGRGNSLWP 60
Query: 58 MTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
FGL+CC VEM + +D+ RFG RASPRQ+D M++AGT KMA ++R+YDQ
Sbjct: 61 YNFGLSCCYVEMTTSFTAVHDVARFGSEVIRASPRQADFMVIAGTPFIKMAPVIKRLYDQ 120
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
M EP++VISMGSCAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA I +LLL++
Sbjct: 121 MLEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYIQALLLLKEA 179
Query: 177 IRRVGN 182
I +
Sbjct: 180 IGKEQR 185
>gi|193787188|dbj|BAG52394.1| unnamed protein product [Homo sapiens]
Length = 206
Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats.
Identities = 103/162 (63%), Positives = 119/162 (73%), Gaps = 4/162 (2%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V+Q + + S + + + + ++V +D LV WAR SL MTFGLAC
Sbjct: 29 GVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 88
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+
Sbjct: 89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 148
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG----CPPT 162
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+PG PPT
Sbjct: 149 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGRAGTAPPT 190
>gi|92115246|ref|YP_575174.1| NADH dehydrogenase subunit B [Chromohalobacter salexigens DSM 3043]
gi|122419105|sp|Q1QST3|NUOB_CHRSD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|91798336|gb|ABE60475.1| NADH dehydrogenase subunit B [Chromohalobacter salexigens DSM 3043]
Length = 226
Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats.
Identities = 79/185 (42%), Positives = 111/185 (60%), Gaps = 7/185 (3%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWM 58
LT +Q+ +S L + ++ + ++ H+ ++ + V W R SL
Sbjct: 5 LTRADQEPAPDGASYPLGRRESTSDPMQEQV-HRNVFTGKLEDVLNSTVNWGRKHSLWPY 63
Query: 59 TFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++++YDQM
Sbjct: 64 NFGLSCCYVEMTTAFTAPHDVARFGSEVIRASPRQADFMVIAGTCFIKMAPVIQQLYDQM 123
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP++VISMGSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G+ LLQ I
Sbjct: 124 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLQLLQDSI 182
Query: 178 RRVGN 182
+
Sbjct: 183 QEERR 187
>gi|251789015|ref|YP_003003736.1| NADH dehydrogenase subunit B [Dickeya zeae Ech1591]
gi|247537636|gb|ACT06257.1| NADH-quinone oxidoreductase, B subunit [Dickeya zeae Ech1591]
Length = 224
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 75/169 (44%), Positives = 102/169 (60%), Gaps = 2/169 (1%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
E V + + G L S+ +V W R+ SL FGL+CC VEM +
Sbjct: 18 PLQKQEIVGDPLEQHVNRSVFMGNLEQSLHSMVNWGRSNSLWPYNFGLSCCYVEMATSFT 77
Query: 75 PRYDLERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+D+ RFG RASPRQ+D M+VAGT KMA ++R+YDQM P++VISMG+CAN G
Sbjct: 78 SVHDVARFGSEVIRASPRQADFMVVAGTPFLKMAPVIQRLYDQMLAPKWVISMGACANSG 137
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G Y YSVV+G D+ +PVD+Y+PGCPP EA + +LLL++ I +
Sbjct: 138 GMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLKESIGKERR 185
>gi|213022740|ref|ZP_03337187.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 184
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 2/170 (1%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
L+K + + E+ K T+ +V W R S+ FGL+CC VEM+ +
Sbjct: 14 NDRYPLQKQEIVTDPLEQEVKQKRVHGTNCMTVVNWGRKNSIWPYNFGLSCCYVEMVTSF 73
Query: 74 MPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
+D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VISMG+CAN
Sbjct: 74 TAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANS 133
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ+ I +
Sbjct: 134 GGMY-DIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKERR 182
>gi|296124090|ref|YP_003631868.1| NADH-quinone oxidoreductase, subunit beta [Planctomyces limnophilus
DSM 3776]
gi|296016430|gb|ADG69669.1| NADH-quinone oxidoreductase, B subunit [Planctomyces limnophilus
DSM 3776]
Length = 230
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 72/185 (38%), Positives = 106/185 (57%), Gaps = 7/185 (3%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
M + + + S + +T+++ +WAR SL M F
Sbjct: 1 MAIAQPPGSGGASATPGSSAPFVNPQKGLPD-----NVFLTTLNAASSWARKNSLWPMPF 55
Query: 61 GLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
ACC +E+M + R+DL RFG R SPRQ D+MIVAG + KM L+R++ QMPE
Sbjct: 56 ATACCGIELMATASSRHDLARFGAEVMRFSPRQCDLMIVAGRVAMKMMPVLQRIWLQMPE 115
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P++ ISMG+CA GG + +Y+VV+G DR +PVD+YVPGCPP E LI GI+ +Q +++
Sbjct: 116 PKWCISMGACACTGGVF-DTYAVVQGIDRFIPVDLYVPGCPPRPEQLIAGIMQIQDLVQK 174
Query: 180 VGNVK 184
G ++
Sbjct: 175 TGTMQ 179
>gi|116624397|ref|YP_826553.1| NADH dehydrogenase subunit B [Candidatus Solibacter usitatus
Ellin6076]
gi|122252953|sp|Q01VP7|NUOB2_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|116227559|gb|ABJ86268.1| NADH-quinone oxidoreductase, B subunit [Candidatus Solibacter
usitatus Ellin6076]
Length = 184
Score = 197 bits (502), Expect = 5e-49, Method: Composition-based stats.
Identities = 78/180 (43%), Positives = 121/180 (67%), Gaps = 4/180 (2%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
+ + S + +VD ++ ++G ++T++D V WAR S+ MTFGLACCA
Sbjct: 2 EKPMASSGPAELFTRVDDYSVANAAAAANEGIVMTTLDAAVNWARKNSIWPMTFGLACCA 61
Query: 67 VEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
+EMM S R+D+ RFG R SPRQSD+MI+AG ++NKMA +R +Y QMPEP++ IS
Sbjct: 62 IEMMSMSASRFDIARFGAEVFRGSPRQSDLMIIAGRVSNKMAPVIRHLYQQMPEPKWAIS 121
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV-GNVK 184
MG+CA G ++ +Y+++ ++++P+D++VPGCPP E LIY +++LQ+KI+ G VK
Sbjct: 122 MGACATSTGVFN-NYALI-PVNQVIPIDVFVPGCPPRPEQLIYALMMLQEKIKNQSGTVK 179
>gi|304311496|ref|YP_003811094.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1]
gi|301797229|emb|CBL45449.1| NADH dehydrogenase I, chain B [gamma proteobacterium HdN1]
Length = 224
Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats.
Identities = 72/183 (39%), Positives = 107/183 (58%), Gaps = 10/183 (5%)
Query: 9 KIISGQSSCSLEKVDADFSRIS----SEITHKGFLVTSVDQ----LVTWARTGSLMWMTF 60
+ + ++ + +I + ++ ++ ++ +V W R S+ F
Sbjct: 4 TLTRVNPNGPHDRYPVEEKQIVSDPLEDQVNRNVMMGRLEDMLHGVVNWGRKNSIWPYNF 63
Query: 61 GLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
GL+CC VE+ A +D+ RFG RASPRQ+D+M+VAGT KMA ++R+Y+QM E
Sbjct: 64 GLSCCYVEVTTAFTAPHDIARFGSEVLRASPRQADLMVVAGTCFVKMAPVVQRLYEQMLE 123
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
PR+VISMG+CAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + + LLQ I +
Sbjct: 124 PRWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQALQLLQDSIGK 182
Query: 180 VGN 182
Sbjct: 183 ERR 185
>gi|326772151|ref|ZP_08231436.1| NADH dehydrogenase I, B subunit [Actinomyces viscosus C505]
gi|326638284|gb|EGE39185.1| NADH dehydrogenase I, B subunit [Actinomyces viscosus C505]
Length = 204
Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats.
Identities = 81/163 (49%), Positives = 120/163 (73%), Gaps = 2/163 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+ ++ ++E+ + GFL+T+V++L A+ S+ +T GLACCA+EMM A PR+D+ RF
Sbjct: 16 NDPYAAAAAEVDNPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMARF 75
Query: 83 GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
G+ RASPR +DVMIV+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ +Y+
Sbjct: 76 GWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFN-NYA 134
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VV+GCD IVPVDIY+PGCPP E L+ +L L ++I + K
Sbjct: 135 VVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEKKPLFK 177
>gi|312131895|ref|YP_003999235.1| NADH dehydrogenase subunit b [Leadbetterella byssophila DSM 17132]
gi|311908441|gb|ADQ18882.1| NADH dehydrogenase subunit B [Leadbetterella byssophila DSM 17132]
Length = 185
Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats.
Identities = 66/149 (44%), Positives = 101/149 (67%), Gaps = 2/149 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDV 95
GF TS+D+++ AR+ SL + F +CC +E M YD+ RFG P SPRQSDV
Sbjct: 17 GFFATSLDKVIGLARSHSLWPLPFATSCCGIEFMATMGAHYDISRFGAERPSFSPRQSDV 76
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
++V GT+ KMA +++VY QM EPR+VI++G+CA+ GG + +YSV++G DR++PVD+Y
Sbjct: 77 LLVMGTIAKKMAPVVKQVYLQMAEPRWVIAVGACASSGGIF-DTYSVLQGIDRVIPVDVY 135
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VPGCPP E ++ G++ +Q+ + +
Sbjct: 136 VPGCPPRPEQILDGLMQVQELAKNESLRR 164
>gi|24372606|ref|NP_716648.1| NADH dehydrogenase subunit B [Shewanella oneidensis MR-1]
gi|81589369|sp|Q8EI30|NUOB_SHEON RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|24346631|gb|AAN54093.1|AE015546_10 NADH dehydrogenase I, B subunit [Shewanella oneidensis MR-1]
Length = 224
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 72/173 (41%), Positives = 103/173 (59%), Gaps = 2/173 (1%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
+ + VD ++ ++ G L + V W R SL FG++CC VEM
Sbjct: 14 VERYPQEQRQTVDDPLAQEATRGIMMGRLEEVLKDTVNWGRKNSLWPYNFGISCCYVEMC 73
Query: 71 QASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+Q+ EP++VISMG+C
Sbjct: 74 TAFTSPHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEPKWVISMGAC 133
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
AN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ I +
Sbjct: 134 ANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDSIGKERR 185
>gi|309812337|ref|ZP_07706092.1| NADH-quinone oxidoreductase, B subunit [Dermacoccus sp. Ellin185]
gi|308433642|gb|EFP57519.1| NADH-quinone oxidoreductase, B subunit [Dermacoccus sp. Ellin185]
Length = 249
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 76/137 (55%), Positives = 100/137 (72%), Gaps = 1/137 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTN 104
++ W R SL FGLACCA+E + SM R+D R G P PRQ+D+M+V+GT+T+
Sbjct: 53 VLNWGRRYSLWVFNFGLACCAIEFIAGSMSRHDFIRLGVIPFAPGPRQADLMVVSGTVTD 112
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
KMA A+RR+YDQMPEP+YVIS G+C+N GG Y SYSV +G D++VPVD+YVPGCPP E
Sbjct: 113 KMAPAVRRLYDQMPEPKYVISFGACSNSGGPYWDSYSVTKGVDQLVPVDVYVPGCPPRPE 172
Query: 165 ALIYGILLLQKKIRRVG 181
AL+ GI+ LQ +I +
Sbjct: 173 ALLQGIVTLQNQIAQEK 189
>gi|153004155|ref|YP_001378480.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. Fw109-5]
gi|218527973|sp|A7H9V0|NUOB1_ANADF RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|152027728|gb|ABS25496.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp.
Fw109-5]
Length = 172
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 82/143 (57%), Positives = 105/143 (73%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
F + +D+L+ AR SL ++ FGLACC +E+MQ PR D+ RFG PRASPRQ+D MI
Sbjct: 16 FHTSQLDKLINMARENSLWYLLFGLACCGIELMQFGGPRADVMRFGAIPRASPRQADFMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGTLT KMA + +YDQMPEP+YVISMGSC+N GG + YSV +G D+++PVD+YVP
Sbjct: 76 VAGTLTYKMAERAKLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVP 135
Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
GCPP EAL G++ LQ+ IR
Sbjct: 136 GCPPRPEALTEGLIRLQELIRSE 158
>gi|111220500|ref|YP_711294.1| NADH dehydrogenase subunit B [Frankia alni ACN14a]
gi|111148032|emb|CAJ59698.1| NADH dehydrogenase subunit [Frankia alni ACN14a]
Length = 271
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 79/141 (56%), Positives = 105/141 (74%), Gaps = 2/141 (1%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVM 96
L+ SV++L W+R SL TFGLACCA+EMM RYDL RFG RASPRQ+D+M
Sbjct: 1 MLLASVEKLANWSRRSSLWPATFGLACCAIEMMSTGAGRYDLSRFGMEVFRASPRQADLM 60
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
IVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IVPVD+Y+
Sbjct: 61 IVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIVPVDMYL 119
Query: 157 PGCPPTAEALIYGILLLQKKI 177
PGCPP E L+ I+ L +KI
Sbjct: 120 PGCPPRPEMLMDAIIKLHEKI 140
>gi|162448793|ref|YP_001611160.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
gi|238065021|sp|A9GUX6|NUOB1_SORC5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|161159375|emb|CAN90680.1| NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56']
Length = 194
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 69/153 (45%), Positives = 104/153 (67%), Gaps = 2/153 (1%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
E + GF T VD L+ WA+ SL F ACC +E M + PR+D+ RFG PR SP
Sbjct: 15 EGSEHGFATTRVDALLNWAKKYSLFQYPFVTACCGMEYMAMASPRFDMARFGAEVPRFSP 74
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D++ V GT++ + A AL+R+Y+QM +P++V++ G+CA+ GG ++ +Y+ V G D+++
Sbjct: 75 RQADLLWVVGTISQRQAPALKRIYEQMADPKWVLAFGTCASCGG-FYDNYTTVAGIDKVI 133
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
P D+YVPGCPP EA++ G++LLQ KI R
Sbjct: 134 PCDVYVPGCPPRPEAVLDGLMLLQDKIARGDRT 166
>gi|326799001|ref|YP_004316820.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21]
gi|326549765|gb|ADZ78150.1| NAD(P)H-quinone oxidoreductase subunit K [Sphingobacterium sp. 21]
Length = 183
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 70/163 (42%), Positives = 102/163 (62%), Gaps = 2/163 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D + +T GF T++D+ V AR SL + F +CC +E M YDL RF
Sbjct: 3 DIKLAPPPPGVTGSGFFATTLDKAVGLARANSLWPLPFATSCCGIEFMATMGATYDLARF 62
Query: 83 GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
G P SPRQSD+++V GT+ KM L++VY QM EPR+VI++G+CA+ GG + +YS
Sbjct: 63 GAERPSFSPRQSDMLLVMGTIAKKMGPVLKQVYIQMAEPRWVIAVGACASSGGIF-DTYS 121
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
V++G D ++PVD+YVPGCPP EA++ G++ LQ +R +
Sbjct: 122 VLQGIDEVIPVDVYVPGCPPRPEAILDGVMRLQDIVRNESVRR 164
>gi|283850904|ref|ZP_06368190.1| NADH dehydrogenase I, D subunit [Desulfovibrio sp. FW1012B]
gi|283573827|gb|EFC21801.1| NADH dehydrogenase I, D subunit [Desulfovibrio sp. FW1012B]
Length = 790
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 99/141 (70%), Gaps = 2/141 (1%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDVMI 97
L D ++ WAR S+ FGL+CC VE A PRYD+ R+G R SPRQ+DV+I
Sbjct: 8 LFRPTDHIINWARKNSIWPFFFGLSCCFVEEATAWGPRYDIARYGSEVFRGSPRQADVLI 67
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
V+GTL K+A R+Y+QM +P++VISMGSC+N GG Y YSVV+G D+I+PVD+Y+P
Sbjct: 68 VSGTLFTKVAPVALRLYEQMSDPKWVISMGSCSNSGGMY-DVYSVVQGTDQILPVDVYIP 126
Query: 158 GCPPTAEALIYGILLLQKKIR 178
GCPP EAL G+LLLQKKI
Sbjct: 127 GCPPRPEALFDGLLLLQKKIA 147
>gi|226944919|ref|YP_002799992.1| NADH dehydrogenase subunit B [Azotobacter vinelandii DJ]
gi|259514652|sp|C1DL15|NUOB_AZOVD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|226719846|gb|ACO79017.1| NADH-ubiquinone oxidoreductase, chain beta [Azotobacter vinelandii
DJ]
Length = 224
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 101/158 (63%), Gaps = 6/158 (3%)
Query: 30 SSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
S H+ + ++ + V W R SL FGL+CC VEM A +D+ RFG
Sbjct: 29 SEGQVHRNIFMGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAE 88
Query: 86 -PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
RASPRQ+D M++AGT KMA ++R+Y+QM EP++VISMGSCAN GG Y YSVV+
Sbjct: 89 VIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCANSGGMY-DIYSVVQ 147
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G D+ +P+D+Y+PGCPP EA + G++LLQ+ I +
Sbjct: 148 GVDKFLPIDVYIPGCPPRPEAFLQGLMLLQESIGQERR 185
>gi|312200066|ref|YP_004020127.1| NADH-quinone oxidoreductase B subunit [Frankia sp. EuI1c]
gi|311231402|gb|ADP84257.1| NADH-quinone oxidoreductase, B subunit [Frankia sp. EuI1c]
Length = 276
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 79/149 (53%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+ SV++L R SL +TFGLACCA+EMM RYDL RFG RAS
Sbjct: 4 EEKLPSGVLLASVEKLAGMGRKSSLWPVTFGLACCAIEMMGTGAARYDLARFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQMPEP++V+SMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIR 178
VPVD+Y+PGCPP E L+ I+ + +KI+
Sbjct: 123 VPVDMYLPGCPPRPEMLMDAIMKIHRKIQ 151
>gi|182412567|ref|YP_001817633.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1]
gi|238065033|sp|B1ZUJ0|NUOB2_OPITP RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|177839781|gb|ACB74033.1| NADH-quinone oxidoreductase, B subunit [Opitutus terrae PB90-1]
Length = 191
Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats.
Identities = 83/171 (48%), Positives = 110/171 (64%), Gaps = 11/171 (6%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASM 74
+ S ++ + S+I+ +D L+ R SL +TFGLACCA+EMM A M
Sbjct: 21 TGPSTPEIPPEVSQIAR--------FAKLDDLLALGRANSLWPLTFGLACCAIEMMAAGM 72
Query: 75 PRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
R+D+ RFG R SPRQ+DVMIVAGT+ KMA A++ +YDQM EP++VI+MG CA G
Sbjct: 73 ARFDISRFGAEVFRPSPRQADVMIVAGTVNKKMAPAVKLLYDQMLEPKWVIAMGQCAISG 132
Query: 134 GYYHYS--YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G + Y Y+VV G D++ PVD+YVPGCPP EALI GIL L++KI
Sbjct: 133 GPFKYPGQYAVVEGVDQLFPVDVYVPGCPPRPEALIEGILKLEEKITGKRR 183
>gi|145592956|ref|YP_001157253.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica
CNB-440]
gi|238065020|sp|A4X1X5|NUOB1_SALTO RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|145302293|gb|ABP52875.1| NADH-quinone oxidoreductase, B subunit [Salinispora tropica
CNB-440]
Length = 188
Score = 197 bits (500), Expect = 7e-49, Method: Composition-based stats.
Identities = 78/146 (53%), Positives = 104/146 (71%), Gaps = 1/146 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVM 96
L + ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M
Sbjct: 6 VLGEPIRFVLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLM 65
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
+V+GT+T+KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YV
Sbjct: 66 VVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYV 125
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGN 182
PGCPP EAL++GIL LQ+KI
Sbjct: 126 PGCPPRPEALLHGILRLQEKIAAEEA 151
>gi|257051791|ref|YP_003129624.1| NADH-quinone oxidoreductase, B subunit [Halorhabdus utahensis DSM
12940]
gi|256690554|gb|ACV10891.1| NADH-quinone oxidoreductase, B subunit [Halorhabdus utahensis DSM
12940]
Length = 231
Score = 197 bits (500), Expect = 7e-49, Method: Composition-based stats.
Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 2/170 (1%)
Query: 12 SGQSSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
S + + E VD F+ R+ + F++T DQ + WAR S+ + FG+ACC++EMM
Sbjct: 15 STREARMGEGVDDRFNSRLREALGSTPFILTKFDQFMNWARGSSMFMLQFGIACCSIEMM 74
Query: 71 QASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
++DL+RF PRASPRQ+DVMIV GT+ +K A ++RVYDQ+PEP++ I MGSC
Sbjct: 75 HTYSVKHDLDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQVPEPKFTIGMGSC 134
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
GG + Y+VV+G + ++P+DI +PGCPP EALIYG+ LQ++I
Sbjct: 135 TISGGPFQEGYNVVKGAEEVIPIDIQIPGCPPRPEALIYGVAKLQERIAN 184
>gi|240169669|ref|ZP_04748328.1| NADH dehydrogenase subunit B [Mycobacterium kansasii ATCC 12478]
Length = 184
Score = 197 bits (500), Expect = 7e-49, Method: Composition-based stats.
Identities = 75/150 (50%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+++V+++ + R SL TFGLACCA+EMM + PR+DL RFG A+
Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDLARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L++ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQE 152
>gi|218528061|sp|Q67P21|NUOB1_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
Length = 166
Score = 197 bits (500), Expect = 7e-49, Method: Composition-based stats.
Identities = 75/148 (50%), Positives = 112/148 (75%), Gaps = 3/148 (2%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ-ASMPRYDLERFGFA-PRASPRQ 92
GF+ T+VD + WA++ S+ +TFGLACCA+EMM AS PRYD+ RFG RASPRQ
Sbjct: 10 QGGFVTTTVDSFLRWAQSNSIWPLTFGLACCAIEMMNLASGPRYDIARFGSEAFRASPRQ 69
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
+D++ ++G ++NKMA ++RVY QM EP++V++ G+CA+ GG + +Y++++G D ++PV
Sbjct: 70 ADLIFISGRVSNKMAPVIKRVYSQMLEPKWVVAFGACASSGGIF-DNYAIMQGVDNLLPV 128
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRV 180
DIYVPGCPPT EA+IY + L+ +IR+
Sbjct: 129 DIYVPGCPPTPEAVIYAVQKLRDRIRKE 156
>gi|320352991|ref|YP_004194330.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
gi|320121493|gb|ADW17039.1| NADH dehydrogenase subunit B [Desulfobulbus propionicus DSM 2032]
Length = 165
Score = 197 bits (500), Expect = 8e-49, Method: Composition-based stats.
Identities = 78/158 (49%), Positives = 105/158 (66%), Gaps = 4/158 (2%)
Query: 29 ISSEITHKGFL-VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
+ EI + +D+L+ R SL MTFGLACCA+EMM RYD+ RFG
Sbjct: 1 MGEEIVPSSIVQFAQLDKLLNLGRANSLWPMTFGLACCAIEMMCTGGSRYDISRFGAEVF 60
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVR 144
R SPRQSDVMIVAGT+ K+ A++ +YDQMPEP++VI+MG+CA GG + +Y+VV
Sbjct: 61 RPSPRQSDVMIVAGTINKKLELAVKTLYDQMPEPKWVIAMGNCAISGGPFKVKENYNVVE 120
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
G D++ PVD+Y+PGCPP EAL+ GI+ L++KI
Sbjct: 121 GADKLFPVDVYIPGCPPRPEALLEGIMALEEKITGKRR 158
>gi|110637786|ref|YP_677993.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406]
gi|123163626|sp|Q11VB3|NUOB2_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|110280467|gb|ABG58653.1| NADH dehydrogenase subunit B [Cytophaga hutchinsonii ATCC 33406]
Length = 181
Score = 197 bits (500), Expect = 8e-49, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 3/163 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
D + GF TS+D ++ AR SL + F +CC +E M YD+ RF
Sbjct: 3 DIKIEEKPDGLEGPGFFATSLDSVIGLARKNSLWPLPFATSCCGIEFMATMASTYDIARF 62
Query: 83 GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
G P SPRQ+DV++V GT+ KM LR VY+QM EP++V+++G+CA+ GG + +YS
Sbjct: 63 GAERPSFSPRQADVLLVMGTIAKKMGPVLRHVYEQMAEPKWVVAVGACASSGGIF-DTYS 121
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
V++G DRI+PVD+YVPGCPP E +I G++ +Q + +++
Sbjct: 122 VLQGIDRIIPVDVYVPGCPPRPEQIIQGLMRVQD-LASTESLR 163
>gi|146277729|ref|YP_001167888.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17025]
gi|238065015|sp|A4WT69|NUOB1_RHOS5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|145555970|gb|ABP70583.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
ATCC 17025]
Length = 205
Score = 197 bits (500), Expect = 8e-49, Method: Composition-based stats.
Identities = 79/162 (48%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+ + + L T +D LV W+R SL FGL+CC VEM A P YD R
Sbjct: 5 IGRPGAEAPEDRMAASHLFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTPVYDQAR 64
Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
FG R++PRQ+D++IV+GT+ KMA L R+Y QM EPR+VISMG+CAN GG Y Y
Sbjct: 65 FGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYQQMREPRWVISMGACANSGGMY-DIY 123
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
SVV+G D +PVD+YVPGCPP EAL+ ++LLQ KI
Sbjct: 124 SVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKIATEAR 165
>gi|126462505|ref|YP_001043619.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides ATCC 17029]
gi|238065036|sp|A3PKI1|NUOB2_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|126104169|gb|ABN76847.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
ATCC 17029]
Length = 205
Score = 197 bits (500), Expect = 8e-49, Method: Composition-based stats.
Identities = 79/162 (48%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+ + + L T +D LV W+R SL FGL+CC VEM A P YD R
Sbjct: 5 IGRPDAEAPEDRMAASHLFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTPVYDQAR 64
Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
FG R++PRQ+D++IV+GT+ KMA L R+Y QM EPR+VISMG+CAN GG Y Y
Sbjct: 65 FGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSGGMY-DIY 123
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
SVV+G D +PVD+YVPGCPP EAL+ ++LLQ KI
Sbjct: 124 SVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKIATEAR 165
>gi|325067538|ref|ZP_08126211.1| NADH-quinone oxidoreductase, B subunit [Actinomyces oris K20]
Length = 207
Score = 197 bits (500), Expect = 8e-49, Method: Composition-based stats.
Identities = 81/163 (49%), Positives = 119/163 (73%), Gaps = 2/163 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+ ++ ++E+ GFL+T+V++L A+ S+ +T GLACCA+EMM A PR+D+ RF
Sbjct: 19 NDPYAAAAAEVDSPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMARF 78
Query: 83 GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
G+ RASPR +DVMIV+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ +Y+
Sbjct: 79 GWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFN-NYA 137
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VV+GCD IVPVDIY+PGCPP E L+ +L L ++I + K
Sbjct: 138 VVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEKKPLFK 180
>gi|238061184|ref|ZP_04605893.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC
39149]
gi|237882995|gb|EEP71823.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. ATCC
39149]
Length = 204
Score = 197 bits (500), Expect = 8e-49, Method: Composition-based stats.
Identities = 77/146 (52%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVM 96
L + ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M
Sbjct: 6 VLGEPIRFVLNWGRRYSLWVFNFGLACCAIEFIATSMGRHDFIRLGVIPFAHGPRQADLM 65
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
+V+GT+T+KMA A++R+Y+QMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YV
Sbjct: 66 VVSGTVTDKMAPAIKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYV 125
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGN 182
PGCPP EAL++GIL LQ+KI +
Sbjct: 126 PGCPPRPEALLHGILRLQEKIAAEQS 151
>gi|77463673|ref|YP_353177.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodobacter
sphaeroides 2.4.1]
gi|221639516|ref|YP_002525778.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides KD131]
gi|332558529|ref|ZP_08412851.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N]
gi|123591710|sp|Q3J1Q8|NUOB2_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|238065037|sp|B9KJI0|NUOB2_RHOSK RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|77388091|gb|ABA79276.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodobacter
sphaeroides 2.4.1]
gi|221160297|gb|ACM01277.1| NADH-quinone oxidoreductase, B subunit [Rhodobacter sphaeroides
KD131]
gi|332276241|gb|EGJ21556.1| NADH dehydrogenase subunit B [Rhodobacter sphaeroides WS8N]
Length = 205
Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats.
Identities = 79/162 (48%), Positives = 101/162 (62%), Gaps = 2/162 (1%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+ + + L T +D LV W+R SL FGL+CC VEM A P YD R
Sbjct: 5 IGRPDAEAPEDRMAASHLFTRLDDLVAWSRKHSLWPFNFGLSCCYVEMATALTPVYDQAR 64
Query: 82 FGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
FG R++PRQ+D++IV+GT+ KMA L R+Y QM EPR+VISMG+CAN GG Y Y
Sbjct: 65 FGAEVIRSTPRQADLLIVSGTVFRKMAVPLYRLYSQMREPRWVISMGACANSGGMY-DIY 123
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
SVV+G D +PVD+YVPGCPP EAL+ ++LLQ KI
Sbjct: 124 SVVQGVDSFLPVDVYVPGCPPRPEALMEALVLLQSKIATEAR 165
>gi|300123970|emb|CBK25241.2| unnamed protein product [Blastocystis hominis]
Length = 274
Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats.
Identities = 93/162 (57%), Positives = 118/162 (72%), Gaps = 2/162 (1%)
Query: 23 DADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
E VT+VD+++ + R GS+ TFGLACCA+EM+ AS R+D E
Sbjct: 106 PDQIPVSKGEKLDNAIEAAVTTVDKVIGYCRAGSVFPQTFGLACCAMEMIDASSARFDFE 165
Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
R G PRA+PRQ+D+MIV+GT+TNKMA A+RR+YDQM EPRYVISMGSCAN GGYY YSY
Sbjct: 166 RLGMIPRATPRQADLMIVSGTVTNKMAPAIRRLYDQMSEPRYVISMGSCANSGGYYAYSY 225
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
+VVRG DR+ PVD YVPGCPPTA+ L+Y IL++ KK+++
Sbjct: 226 NVVRGVDRLFPVDYYVPGCPPTADGLLYAILMVMKKLKQQKT 267
>gi|269128582|ref|YP_003301952.1| NADH-quinone oxidoreductase subunit B [Thermomonospora curvata DSM
43183]
gi|268313540|gb|ACY99914.1| NADH-quinone oxidoreductase, B subunit [Thermomonospora curvata DSM
43183]
Length = 323
Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats.
Identities = 76/143 (53%), Positives = 101/143 (70%), Gaps = 1/143 (0%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIV 98
+ ++ W R SL FGLACCA+E + ASM R+D R G P PRQ+D+M+V
Sbjct: 19 PKPIKFVLNWGRRYSLWVFNFGLACCAIEFIAASMSRHDFIRLGVIPFAPGPRQADLMVV 78
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
+GT+T+KMA A+RR+Y+QMPEP+YVIS G+C+N GG Y SY V +G D+I+PVD+YVPG
Sbjct: 79 SGTVTDKMAPAVRRLYEQMPEPKYVISFGACSNCGGPYWDSYCVTKGVDQIIPVDVYVPG 138
Query: 159 CPPTAEALIYGILLLQKKIRRVG 181
CPP EAL+ GI+ LQ+KI
Sbjct: 139 CPPRPEALLQGIVRLQEKIAAES 161
>gi|15610282|ref|NP_217662.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Rv]
gi|15842722|ref|NP_337759.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis CDC1551]
gi|31794322|ref|NP_856815.1| NADH dehydrogenase subunit B [Mycobacterium bovis AF2122/97]
gi|121639029|ref|YP_979253.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148663001|ref|YP_001284524.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Ra]
gi|148824340|ref|YP_001289094.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis F11]
gi|167970182|ref|ZP_02552459.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis H37Ra]
gi|215405144|ref|ZP_03417325.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 02_1987]
gi|215432105|ref|ZP_03430024.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054]
gi|215447436|ref|ZP_03434188.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85]
gi|218754926|ref|ZP_03533722.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis GM 1503]
gi|219559192|ref|ZP_03538268.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T17]
gi|224991521|ref|YP_002646210.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Tokyo
172]
gi|253800180|ref|YP_003033181.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
1435]
gi|254233766|ref|ZP_04927091.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
chain B) [Mycobacterium tuberculosis C]
gi|254365771|ref|ZP_04981816.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
chain B) [Mycobacterium tuberculosis str. Haarlem]
gi|254552237|ref|ZP_05142684.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260188187|ref|ZP_05765661.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis CPHL_A]
gi|260202292|ref|ZP_05769783.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T46]
gi|260206485|ref|ZP_05773976.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis K85]
gi|289444710|ref|ZP_06434454.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
T46]
gi|289448826|ref|ZP_06438570.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
CPHL_A]
gi|289555419|ref|ZP_06444629.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
605]
gi|289571357|ref|ZP_06451584.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
T17]
gi|289575858|ref|ZP_06456085.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
K85]
gi|289746955|ref|ZP_06506333.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis
02_1987]
gi|289755265|ref|ZP_06514643.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054]
gi|289759276|ref|ZP_06518654.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85]
gi|289763329|ref|ZP_06522707.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
chain B) [Mycobacterium tuberculosis GM 1503]
gi|294993125|ref|ZP_06798816.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 210]
gi|297635789|ref|ZP_06953569.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN 4207]
gi|297732786|ref|ZP_06961904.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN R506]
gi|306794900|ref|ZP_07433202.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu005]
gi|306973581|ref|ZP_07486242.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu010]
gi|307085892|ref|ZP_07495005.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu012]
gi|313660119|ref|ZP_07816999.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis KZN V2475]
gi|54037922|sp|P65576|NUOB_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|54041673|sp|P65575|NUOB_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065176|sp|A1KNE2|NUOB_MYCBP RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065181|sp|A5U7G2|NUOB_MYCTA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|254767796|sp|C1AGR3|NUOB_MYCBT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|1781222|emb|CAB06270.1| PROBABLE NADH DEHYDROGENASE I (CHAIN B) NUOB (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN B) [Mycobacterium tuberculosis
H37Rv]
gi|13883044|gb|AAK47573.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis
CDC1551]
gi|31619918|emb|CAD95262.1| PROBABLE NADH DEHYDROGENASE I (CHAIN B) NUOB (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN B) [Mycobacterium bovis AF2122/97]
gi|121494677|emb|CAL73158.1| Probable NADH dehydrogenase I (chain B) nuoB [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|124599295|gb|EAY58399.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
chain B) [Mycobacterium tuberculosis C]
gi|134151284|gb|EBA43329.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
chain B) [Mycobacterium tuberculosis str. Haarlem]
gi|148507153|gb|ABQ74962.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis H37Ra]
gi|148722867|gb|ABR07492.1| NADH dehydrogenase I chain B nuoB (NADH-ubiquinone oxidoreductase
chain B) [Mycobacterium tuberculosis F11]
gi|224774636|dbj|BAH27442.1| NADH dehydrogenase subunit B [Mycobacterium bovis BCG str. Tokyo
172]
gi|253321683|gb|ACT26286.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
1435]
gi|289417629|gb|EFD14869.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
T46]
gi|289421784|gb|EFD18985.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
CPHL_A]
gi|289440051|gb|EFD22544.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
605]
gi|289540289|gb|EFD44867.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
K85]
gi|289545111|gb|EFD48759.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
T17]
gi|289687483|gb|EFD54971.1| NADH dehydrogenase subunit beta [Mycobacterium tuberculosis
02_1987]
gi|289695852|gb|EFD63281.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis EAS054]
gi|289710835|gb|EFD74851.1| NADH dehydrogenase I (chain B) nuoB (NADH-ubiquinone oxidoreductase
chain B) [Mycobacterium tuberculosis GM 1503]
gi|289714840|gb|EFD78852.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis T85]
gi|308336686|gb|EFP25537.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu005]
gi|308357065|gb|EFP45916.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu010]
gi|308364627|gb|EFP53478.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu012]
gi|323718234|gb|EGB27414.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
CDC1551A]
gi|326902630|gb|EGE49563.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
W-148]
gi|328459917|gb|AEB05340.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis KZN
4207]
Length = 184
Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats.
Identities = 74/150 (49%), Positives = 110/150 (73%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+
Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L++ IL L +KI++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQQ 152
>gi|115523729|ref|YP_780640.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
BisA53]
gi|122296835|sp|Q07QX4|NUOB1_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|115517676|gb|ABJ05660.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
BisA53]
Length = 205
Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats.
Identities = 73/161 (45%), Positives = 105/161 (65%), Gaps = 3/161 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+ I ++ L T ++ LV W+R SL FGL+CC VE + A P +D RF
Sbjct: 8 PGEEMPIEEQMARTS-LFTRLEDLVAWSRKNSLWPFNFGLSCCYVEQVTALTPVFDQARF 66
Query: 83 GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
G RASPRQ+D+++V+GT+ +KMA+ L R+Y+QM PR+VISMG+CAN GG Y YS
Sbjct: 67 GAEVIRASPRQADLLVVSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGGMY-DVYS 125
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VV+G D +PVD+Y+PGCPP EA++ ++LLQ+++
Sbjct: 126 VVQGVDSFLPVDVYIPGCPPRPEAVLDALILLQQQVGAQRR 166
>gi|221039728|dbj|BAH11627.1| unnamed protein product [Homo sapiens]
Length = 182
Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats.
Identities = 99/153 (64%), Positives = 115/153 (75%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V+Q + + S + + + + ++V +D LV WAR SL MTFGLAC
Sbjct: 29 GVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 88
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+
Sbjct: 89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 148
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY+P
Sbjct: 149 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIP 181
>gi|116329153|ref|YP_798873.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116330239|ref|YP_799957.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|122281998|sp|Q04V71|NUOB_LEPBJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|122283065|sp|Q04YA5|NUOB_LEPBL RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|116121897|gb|ABJ79940.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116123928|gb|ABJ75199.1| NADH dehydrogenase (ubiquinone), B chain [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 186
Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats.
Identities = 69/159 (43%), Positives = 105/159 (66%), Gaps = 2/159 (1%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+D S+ + + +++ ++ W R SL F ACC +E M + YD+ RFG
Sbjct: 4 SDLSKAPGQALGDMLQLGNIESVIQWGRGNSLWPFPFATACCGIEYMSTACSDYDIARFG 63
Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
P SPRQ+D+++V GT+T KMA LR++YDQM EP++VIS+G+CA+ GG ++ +Y V
Sbjct: 64 AERPSFSPRQADMILVLGTITYKMAPVLRQIYDQMAEPKFVISVGACASSGGMFN-TYGV 122
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
++G DRI+PVDIYVPGCPP EA++ ++ LQ K++ G
Sbjct: 123 LQGVDRILPVDIYVPGCPPRPEAILDALVKLQTKLKTQG 161
>gi|295798101|emb|CAX68920.1| NADH:quinone oxidoreductase, subunit PSST/NdhK/NuoB [uncultured
bacterium]
Length = 155
Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats.
Identities = 65/147 (44%), Positives = 99/147 (67%), Gaps = 2/147 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94
++ + V+ L+ WAR SL F ACC +E M S +DL+RFG PR SPRQ+D
Sbjct: 7 GNYITSRVNDLLGWARKYSLFQYPFVTACCGMEYMSVSCAHHDLDRFGAAFPRFSPRQAD 66
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
V++V GT+++K+A LR VYDQM +P++V++ G C GG ++ +Y+ V+G D I+PVD+
Sbjct: 67 VLLVVGTISHKLAPVLRNVYDQMCDPKWVVAFGVCTCTGG-FYDNYATVQGIDTILPVDV 125
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVG 181
Y+PGCPP E ++ G++ LQ+KI+
Sbjct: 126 YIPGCPPRPENVLDGLMRLQEKIQNQK 152
>gi|131324|sp|P15602|NDUS7_PARTE RecName: Full=NADH-ubiquinone oxidoreductase 20 kDa subunit
gi|578753|emb|CAA34045.1| unnamed protein product [Paramecium aurelia]
Length = 156
Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats.
Identities = 91/143 (63%), Positives = 118/143 (82%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
FL S + L++WAR GS +TFGLACCA+EMM A++ RYD +RFG RA+PRQ+D++I
Sbjct: 7 FLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQADLII 66
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGT+TNKMA ALRR+YDQ +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PVD+ P
Sbjct: 67 VAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDMLCP 126
Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
CPPTAEAL +G+L LQK + +
Sbjct: 127 RCPPTAEALFFGVLQLQKTLMKT 149
>gi|90425545|ref|YP_533915.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
BisB18]
gi|122475341|sp|Q20Z40|NUOB2_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|90107559|gb|ABD89596.1| NADH-quinone oxidoreductase, B subunit [Rhodopseudomonas palustris
BisB18]
Length = 205
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 70/145 (48%), Positives = 99/145 (68%), Gaps = 2/145 (1%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97
L ++ LV W+R SL FGL+CC VE + A YD RFG RASPRQ+D+++
Sbjct: 23 LFARLEDLVAWSRKNSLWPFNFGLSCCYVEQVTALTSVYDQARFGAEVIRASPRQADLLV 82
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
V+GT+ +KMA+ L R+Y+QM PR+VISMG+CAN GG Y YSVV+G D +PVD+Y+P
Sbjct: 83 VSGTVFHKMAAPLLRLYEQMRAPRWVISMGACANSGGMY-DIYSVVQGVDSFLPVDVYIP 141
Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
GCPP EA++ +++LQ+++
Sbjct: 142 GCPPRPEAVLDALIMLQQQVGSEHR 166
>gi|289751824|ref|ZP_06511202.1| LOW QUALITY PROTEIN: NADH dehydrogenase subunit I B nuoB
[Mycobacterium tuberculosis T92]
gi|289692411|gb|EFD59840.1| LOW QUALITY PROTEIN: NADH dehydrogenase subunit I B nuoB
[Mycobacterium tuberculosis T92]
Length = 185
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 74/150 (49%), Positives = 110/150 (73%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+
Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L++ IL L +KI++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQQ 152
>gi|118617947|ref|YP_906279.1| NADH dehydrogenase subunit B [Mycobacterium ulcerans Agy99]
gi|183981497|ref|YP_001849788.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone
oxidoreductase chain B) [Mycobacterium marinum M]
gi|238065178|sp|B2HGE7|NUOB_MYCMM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065182|sp|A0PR39|NUOB_MYCUA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|118570057|gb|ABL04808.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone
oxidoreductase chain B) [Mycobacterium ulcerans Agy99]
gi|183174823|gb|ACC39933.1| NADH dehydrogenase I (chain B) NuoB (NADH- ubiquinone
oxidoreductase chain B) [Mycobacterium marinum M]
Length = 184
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 74/150 (49%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+
Sbjct: 4 EEQLPGGILLSTVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L++ IL L +KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQE 152
>gi|8928600|ref|NP_059405.1| NADH dehydrogenase subunit 10 [Paramecium aurelia]
Length = 154
Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats.
Identities = 91/143 (63%), Positives = 118/143 (82%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
FL S + L++WAR GS +TFGLACCA+EMM A++ RYD +RFG RA+PRQ+D++I
Sbjct: 5 FLKLSANNLISWARQGSFWPLTFGLACCALEMMHATVSRYDFDRFGVIFRATPRQADLII 64
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGT+TNKMA ALRR+YDQ +P++V+SMGSCANGGGYYHYSY+VV+GCD+I+PVD+ P
Sbjct: 65 VAGTVTNKMAPALRRLYDQTADPKWVLSMGSCANGGGYYHYSYAVVKGCDKIIPVDMLCP 124
Query: 158 GCPPTAEALIYGILLLQKKIRRV 180
CPPTAEAL +G+L LQK + +
Sbjct: 125 RCPPTAEALFFGVLQLQKTLMKT 147
>gi|126666305|ref|ZP_01737284.1| NADH dehydrogenase subunit B [Marinobacter sp. ELB17]
gi|126629106|gb|EAZ99724.1| NADH dehydrogenase subunit B [Marinobacter sp. ELB17]
Length = 226
Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 78/185 (42%), Positives = 107/185 (57%), Gaps = 5/185 (2%)
Query: 2 GLTTVNQKIISGQSSCSL---EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWM 58
LT + + L ++V+ + + G L +++ V W R SL
Sbjct: 4 SLTRAEDAVAAENDRYPLGKQQQVEDPMRQQVHRSVYTGKLKDALNSTVNWGRKNSLWPY 63
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++++YDQM
Sbjct: 64 NFGLSCCYVEMTTAFTSPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQQLYDQM 123
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
EP++VISMGSCAN GG Y YSVV+G D+ +PVD+YV GCPP EA + G+ LLQ I
Sbjct: 124 LEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVAGCPPRPEAFLQGLQLLQDSI 182
Query: 178 RRVGN 182
+
Sbjct: 183 QEERR 187
>gi|284034168|ref|YP_003384099.1| NADH-quinone oxidoreductase subunit B [Kribbella flavida DSM 17836]
gi|283813461|gb|ADB35300.1| NADH-quinone oxidoreductase, B subunit [Kribbella flavida DSM
17836]
Length = 184
Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 75/150 (50%), Positives = 103/150 (68%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+T+++ L + R SL TFGLACCA+EMM PRYD RFG RAS
Sbjct: 4 EEQLPAGVLLTTIEGLSGYMRKASLWPATFGLACCAIEMMTTGAPRYDAARFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQMP P++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMPNPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVD+Y+PGCPP E L+ L L I+
Sbjct: 123 VPVDMYLPGCPPRPEMLLDAFLKLHDDIQH 152
>gi|229821708|ref|YP_002883234.1| NADH-quinone oxidoreductase, B subunit [Beutenbergia cavernae DSM
12333]
gi|259514655|sp|C5C0S6|NUOB_BEUC1 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|229567621|gb|ACQ81472.1| NADH-quinone oxidoreductase, B subunit [Beutenbergia cavernae DSM
12333]
Length = 184
Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 78/151 (51%), Positives = 105/151 (69%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GF++ V LV R SL +T GLACCA+EMM PR+D+ RFG RAS
Sbjct: 4 EEKAPSGFMLAKVSDLVGLIRKSSLWPVTMGLACCAIEMMATGTPRFDISRFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIV+G ++ KMA +R+VYDQM EP++V+SMG CA+ GG ++ +Y+VV+G D I
Sbjct: 64 PRQADLMIVSGRVSQKMAPVVRQVYDQMSEPKWVLSMGVCASSGGMFN-NYAVVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+PVDIY+PGCPP E L+ IL L ++IR
Sbjct: 123 LPVDIYLPGCPPRPEMLLNAILELHEQIRSE 153
>gi|320532540|ref|ZP_08033350.1| NADH dehydrogenase subunit B [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320135245|gb|EFW27383.1| NADH dehydrogenase subunit B [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 204
Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 81/163 (49%), Positives = 118/163 (72%), Gaps = 2/163 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+ + ++E+ GFL+T+V++L A+ S+ +T GLACCA+EMM A PR+D+ RF
Sbjct: 16 NDPHAAAAAEVDSPGFLLTTVEKLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMARF 75
Query: 83 GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
G+ RASPR +DVMIV+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ +Y+
Sbjct: 76 GWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFN-NYA 134
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VV+GCD IVPVDIY+PGCPP E L+ +L L ++I + K
Sbjct: 135 VVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEKKPLFK 177
>gi|269794074|ref|YP_003313529.1| NADH dehydrogenase subunit B [Sanguibacter keddieii DSM 10542]
gi|269096259|gb|ACZ20695.1| NADH dehydrogenase subunit B [Sanguibacter keddieii DSM 10542]
Length = 183
Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 84/148 (56%), Positives = 111/148 (75%), Gaps = 2/148 (1%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
E GFL+T+V+ L + R GSL +TFGLACCA+EMM A R+DL RFG RASP
Sbjct: 4 EEAPSGFLLTTVEDLAGYFRKGSLWPVTFGLACCAIEMMAAGASRFDLSRFGMEVFRASP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D+MIVAG ++ KMA +R+VYDQMPEP++V+SMG CA+ GG ++ +Y++V+G D IV
Sbjct: 64 RQADLMIVAGRVSQKMAPVVRQVYDQMPEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIV 122
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
PVDIY+PGCPP E LI IL L ++I+
Sbjct: 123 PVDIYLPGCPPRPEMLINSILALHQQIQ 150
>gi|302870016|ref|YP_003838653.1| NADH-quinone oxidoreductase subunit B [Micromonospora aurantiaca
ATCC 27029]
gi|315503712|ref|YP_004082599.1| NADH-quinone oxidoreductase, b subunit [Micromonospora sp. L5]
gi|302572875|gb|ADL49077.1| NADH-quinone oxidoreductase, B subunit [Micromonospora aurantiaca
ATCC 27029]
gi|315410331|gb|ADU08448.1| NADH-quinone oxidoreductase, B subunit [Micromonospora sp. L5]
Length = 186
Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 78/146 (53%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVM 96
L + ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M
Sbjct: 6 VLGEPIRFVLNWGRRYSLWVFNFGLACCAIEFIATSMGRHDFMRLGVIPFAHGPRQADLM 65
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
+V+GT+T+KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YV
Sbjct: 66 VVSGTVTDKMAPAVKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYV 125
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGN 182
PGCPP EAL++GIL LQ+KI +
Sbjct: 126 PGCPPRPEALLHGILRLQEKIAAEQS 151
>gi|117619274|ref|YP_856317.1| NADH dehydrogenase subunit B [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|238065068|sp|A0KJ66|NUOB_AERHH RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|117560681|gb|ABK37629.1| NADH-quinone oxidoreductase chain b [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 224
Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 74/186 (39%), Positives = 104/186 (55%), Gaps = 5/186 (2%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMW 57
M T + E+ ++ E + G L + V W R SL
Sbjct: 1 MKYTLTRIDPDAPVERYPQEQRQTVEDPLAQEASRGIMIGRLEEVLQDTVNWGRKNSLWP 60
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
FG++CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+Q
Sbjct: 61 YNFGISCCYVEMCTAFTSPHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQ 120
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
+ EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP EA + ++LLQ
Sbjct: 121 LLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQALMLLQDS 179
Query: 177 IRRVGN 182
I +
Sbjct: 180 IGKERR 185
>gi|42524476|ref|NP_969856.1| NADH dehydrogenase I chain B [Bdellovibrio bacteriovorus HD100]
gi|81616434|sp|Q6MIR4|NUOB_BDEBA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|39576685|emb|CAE80849.1| NADH dehydrogenase I chain B [Bdellovibrio bacteriovorus HD100]
Length = 187
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 70/153 (45%), Positives = 106/153 (69%), Gaps = 2/153 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
++ +++ + +D +V W R SL M +G ACC +E M P+YDL RFG
Sbjct: 18 TQAVDDMSRGFAFTSKLDAIVAWGRKNSLWPMPYGTACCGIEFMSVMGPKYDLARFGAEV 77
Query: 87 -RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
R SPRQ+D+++VAGT+T KMA + R+Y QM EP+YV+SMG+CA+ GG ++ +Y V++G
Sbjct: 78 ARFSPRQADLLVVAGTITEKMAPVIVRIYQQMLEPKYVLSMGACASSGG-FYRAYHVLQG 136
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
D+++PVD+Y+PGCPPT EA++ GI+ LQ+ I
Sbjct: 137 VDKVIPVDVYIPGCPPTPEAVMDGIMALQRMIA 169
>gi|108798549|ref|YP_638746.1| NADH dehydrogenase subunit B [Mycobacterium sp. MCS]
gi|126434147|ref|YP_001069838.1| NADH dehydrogenase subunit B [Mycobacterium sp. JLS]
gi|122977218|sp|Q1BBP4|NUOB_MYCSS RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|238065180|sp|A3PWS0|NUOB_MYCSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|108768968|gb|ABG07690.1| NADH dehydrogenase subunit B [Mycobacterium sp. MCS]
gi|126233947|gb|ABN97347.1| NADH dehydrogenase subunit B [Mycobacterium sp. JLS]
Length = 184
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 74/150 (49%), Positives = 111/150 (74%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+++V+++ + R GSL TFGLACCA+EMM + PR+D+ RFG A+
Sbjct: 4 EERLPGGILLSTVEKVAGYVRAGSLWPATFGLACCAIEMMSTAGPRFDISRFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L++ I+ L +KI++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAIIKLHEKIQQ 152
>gi|269926648|ref|YP_003323271.1| NADH-quinone oxidoreductase, B subunit [Thermobaculum terrenum ATCC
BAA-798]
gi|269790308|gb|ACZ42449.1| NADH-quinone oxidoreductase, B subunit [Thermobaculum terrenum ATCC
BAA-798]
Length = 175
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 87/150 (58%), Positives = 106/150 (70%), Gaps = 2/150 (1%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD-LERFGFAPRASPRQ 92
L + + WAR SL MTFGLACCA+EMM AS YD +ER G R SPRQ
Sbjct: 10 KRGNLLEATQRAIFGWARKSSLWPMTFGLACCAIEMMSASAANYDVMERSGMLFRPSPRQ 69
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
SD+MIVAG++T KMA LRR+YDQMP+P++VISMGSCA+ GG Y +YS ++G D++VPV
Sbjct: 70 SDLMIVAGSVTLKMAPVLRRLYDQMPDPKWVISMGSCASAGGPYP-TYSHLQGVDKVVPV 128
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+YVPGCPP EAL YGIL LQ I+R
Sbjct: 129 DVYVPGCPPVPEALFYGILQLQGMIQRGDR 158
>gi|95928469|ref|ZP_01311217.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans
DSM 684]
gi|95135740|gb|EAT17391.1| NADH-quinone oxidoreductase, B subunit [Desulfuromonas acetoxidans
DSM 684]
Length = 196
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 101/141 (71%), Gaps = 3/141 (2%)
Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTL 102
D+++ R SL MTFGLACCA+EMM + M R+D+ R+G R SPRQSD+MIVAGT+
Sbjct: 44 DKILNLCRANSLWPMTFGLACCAIEMMCSGMARFDISRYGAEVFRPSPRQSDLMIVAGTV 103
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYVPGCP 160
KMA A+ +Y+QMP PRYVI++G+CA GG + +Y VV G D+++PVD+YVPGCP
Sbjct: 104 NKKMAPAVVTLYEQMPAPRYVIALGNCAISGGPFAVEANYDVVLGVDQLIPVDVYVPGCP 163
Query: 161 PTAEALIYGILLLQKKIRRVG 181
P EALI GIL LQ+KI
Sbjct: 164 PRPEALIEGILQLQEKITGKR 184
>gi|319950452|ref|ZP_08024366.1| NADH dehydrogenase subunit B [Dietzia cinnamea P4]
gi|319435875|gb|EFV91081.1| NADH dehydrogenase subunit B [Dietzia cinnamea P4]
Length = 184
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 85/150 (56%), Positives = 110/150 (73%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRAS 89
E GFL+T+V+QL + R GSL TFGLACCA+EMM S RYDL RFG RAS
Sbjct: 4 EEKLPAGFLLTTVEQLAGYMRKGSLWPATFGLACCAIEMMATSGGRYDLARFGTEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQM EP++V+SMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLSMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L++ I+ L KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLMHAIITLHDKIQN 152
>gi|257459165|ref|ZP_05624284.1| NADH-quinone oxidoreductase, B subunit [Campylobacter gracilis
RM3268]
gi|257443550|gb|EEV18674.1| NADH-quinone oxidoreductase, B subunit [Campylobacter gracilis
RM3268]
Length = 169
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 84/141 (59%), Positives = 110/141 (78%), Gaps = 1/141 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
++T+VD+L+ W R+ SL MT+GLACCA+EMM A R+D +RFG RAS +QSDVMI
Sbjct: 16 VVLTTVDKLIAWGRSNSLWAMTYGLACCAIEMMAAGAGRFDFDRFGTIFRASAKQSDVMI 75
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+AGTL+ K A RR+YD MPEP++VISMGSCAN GG ++ +Y+ V+GCDRIVPVDIY+P
Sbjct: 76 IAGTLSKKHAEFTRRLYDAMPEPKWVISMGSCANTGGMFN-TYATVQGCDRIVPVDIYLP 134
Query: 158 GCPPTAEALIYGILLLQKKIR 178
GC P E L + +++LQKKIR
Sbjct: 135 GCAPRPETLQFAMMVLQKKIR 155
>gi|256396791|ref|YP_003118355.1| NADH-quinone oxidoreductase subunit beta [Catenulispora acidiphila
DSM 44928]
gi|256363017|gb|ACU76514.1| NADH-quinone oxidoreductase, B subunit [Catenulispora acidiphila
DSM 44928]
Length = 184
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 78/150 (52%), Positives = 105/150 (70%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E GFL+T+V+ L + R S+ TFGLACCA+EMM RYDL RFG A+
Sbjct: 4 EEKLPAGFLLTTVEGLAGYMRKSSVWPATFGLACCAIEMMATGAGRYDLARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQM P++VI+MG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMANPKWVIAMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L+ IL L ++I+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILKLHEQIQS 152
>gi|330470216|ref|YP_004407959.1| NADH-quinone oxidoreductase subunit B [Verrucosispora maris
AB-18-032]
gi|328813187|gb|AEB47359.1| NADH-quinone oxidoreductase, B subunit [Verrucosispora maris
AB-18-032]
Length = 197
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 78/146 (53%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS-PRQSDVM 96
L + ++ W R SL FGLACCA+E + SM R+D R G P A PRQ+D+M
Sbjct: 6 VLGEPIRFVLNWGRRYSLWVFNFGLACCAIEFIATSMSRHDFMRLGVIPFAHGPRQADLM 65
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
+V+GT+T+KMA A++R+YDQMPEP+YVIS G+C+N GG Y SYSV +G D+++PVD+YV
Sbjct: 66 VVSGTVTDKMAPAIKRLYDQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQLIPVDVYV 125
Query: 157 PGCPPTAEALIYGILLLQKKIRRVGN 182
PGCPP EAL++GIL LQ+KI +
Sbjct: 126 PGCPPRPEALLHGILRLQEKIAAEQS 151
>gi|215413013|ref|ZP_03421714.1| NADH dehydrogenase subunit B [Mycobacterium tuberculosis 94_M4241A]
gi|298526620|ref|ZP_07014029.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis
94_M4241A]
gi|298496414|gb|EFI31708.1| NADH dehydrogenase I, B subunit [Mycobacterium tuberculosis
94_M4241A]
Length = 184
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 74/150 (49%), Positives = 110/150 (73%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+++V+++ + R SL TFGLACCA+EMM + PR+D+ RFG A+
Sbjct: 4 EEQLPGGILLSNVEKVAGYVRKNSLWPATFGLACCAIEMMATAGPRFDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L++ IL L +KI++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHEKIQQ 152
>gi|52550302|gb|AAU84151.1| F420H2 dehydrogenase subunit B [uncultured archaeon GZfos37B2]
Length = 175
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 64/140 (45%), Positives = 92/140 (65%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+ ++ W R SL +MT + CC VEM+ A YD +RFG PR SPR +DVM+++G
Sbjct: 26 SPAQDVINWGRKNSLWFMTQPMGCCGVEMIAAGCSHYDTDRFGIIPRCSPRHADVMVISG 85
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
+ K AL+R+Y+QMP P++VI MG+C+ GG ++ SY+ ++ D I PVD+Y+ GCP
Sbjct: 86 YIVRKYFPALKRLYEQMPSPKWVICMGNCSISGGPFYRSYNTLQNIDEIFPVDVYITGCP 145
Query: 161 PTAEALIYGILLLQKKIRRV 180
P EALI G + LQKKI+
Sbjct: 146 PRPEALIQGFIELQKKIKAK 165
>gi|54024635|ref|YP_118877.1| NADH dehydrogenase subunit B [Nocardia farcinica IFM 10152]
gi|81602742|sp|Q5YWC8|NUOB_NOCFA RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|54016143|dbj|BAD57513.1| putative NADH dehydrogenase I chain B [Nocardia farcinica IFM
10152]
Length = 184
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 78/151 (51%), Positives = 106/151 (70%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+++V+ + R GS+ TFGLACCA+EMM R+D+ RFG RAS
Sbjct: 4 EEKLPSGFLLSTVESFAGYLRKGSVWPATFGLACCAIEMMATGAGRFDIARFGMEAFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQM EP++V++MG CA+ GG ++ +Y+VV+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVDIY+PGCPP E L+ IL L KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILALHDKIQHT 153
>gi|329944203|ref|ZP_08292462.1| NADH-quinone oxidoreductase subunit 6 [Actinomyces sp. oral taxon
170 str. F0386]
gi|328530933|gb|EGF57789.1| NADH-quinone oxidoreductase subunit 6 [Actinomyces sp. oral taxon
170 str. F0386]
Length = 204
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 81/163 (49%), Positives = 119/163 (73%), Gaps = 2/163 (1%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
+ ++ ++E+ GFL+T+V++L A+ S+ +T GLACCA+EMM A PR+D+ RF
Sbjct: 16 NDPYAAAAAEVDSPGFLLTTVERLAGLAQARSMWPVTMGLACCAIEMMAAGTPRFDMARF 75
Query: 83 GFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
G+ RASPR +DVMIV+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ +Y+
Sbjct: 76 GWEVFRASPRHADVMIVSGRVSHKMAPIVRNVYDSMPEPKWVISMGACASSGGIFN-NYA 134
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VV+GCD IVPVDIY+PGCPP E L+ +L L ++I + K
Sbjct: 135 VVQGCDHIVPVDIYLPGCPPRPEMLLNAMLELTRQIEKKPLFK 177
>gi|227497895|ref|ZP_03928075.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
gi|226832687|gb|EEH65070.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
Length = 209
Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats.
Identities = 82/162 (50%), Positives = 114/162 (70%), Gaps = 2/162 (1%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+ + GFL+TSV++L A+ SL +T GLACCA+EMM + PR+DL RFG
Sbjct: 22 DLQLQAEESVEGPGFLLTSVEKLSALAQARSLWPVTMGLACCAIEMMATAAPRFDLSRFG 81
Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
+ RASPR +DVM+V+G +++KMA +R VYD MPEP++VISMG+CA+ GG ++ +Y++
Sbjct: 82 WEVFRASPRHADVMLVSGRVSHKMAPIVRNVYDAMPEPKWVISMGACASSGGIFN-NYAI 140
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
V+GCD IVPVDIY+PGCPP E LI +L L ++I R K
Sbjct: 141 VQGCDHIVPVDIYLPGCPPRPEMLINAMLELTRQIERRPVFK 182
>gi|239905979|ref|YP_002952718.1| NADH-quinone oxidoreductase chain B/C/D [Desulfovibrio magneticus
RS-1]
gi|239795843|dbj|BAH74832.1| NADH-quinone oxidoreductase chain B/C/D [Desulfovibrio magneticus
RS-1]
Length = 793
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 99/145 (68%), Gaps = 2/145 (1%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97
L D ++ WAR SL FGL+CC VE A PRYD+ RFG R SPRQ+DV+I
Sbjct: 8 LFRPADAVINWARKNSLWPFFFGLSCCFVEEATAWGPRYDIARFGSEVFRGSPRQADVLI 67
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
V+GT+ K+A ++Y+QM +P++VISMGSC+N GG Y YSVV+G D+I+P+D+Y+P
Sbjct: 68 VSGTMFKKIAPVALQLYEQMSDPKWVISMGSCSNSGGMY-DVYSVVQGSDQILPIDVYIP 126
Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
GCPP EA+ G++LLQKKI
Sbjct: 127 GCPPRPEAVFEGLMLLQKKIDASER 151
>gi|269955278|ref|YP_003325067.1| NADH-quinone oxidoreductase subunit B [Xylanimonas cellulosilytica
DSM 15894]
gi|269303959|gb|ACZ29509.1| NADH-quinone oxidoreductase, B subunit [Xylanimonas cellulosilytica
DSM 15894]
Length = 183
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 81/148 (54%), Positives = 108/148 (72%), Gaps = 2/148 (1%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
E GFL+T+++ L + R SL +TFGLACCA+EMM A R+DL RFG RASP
Sbjct: 4 EEAPSGFLLTTIEDLAGYLRKASLWPVTFGLACCAIEMMAAGASRFDLSRFGMEVFRASP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQ+D+MIVAG ++ KMA +R+VYDQM EP++V+SMG CA+ GG ++ +Y++V+G D IV
Sbjct: 64 RQADLMIVAGRVSQKMAPVVRQVYDQMSEPKWVLSMGVCASSGGMFN-NYAIVQGVDHIV 122
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIR 178
PVDIY+PGCPP E LI IL L ++I
Sbjct: 123 PVDIYLPGCPPRPEMLINAILALHQQIA 150
>gi|119714785|ref|YP_921750.1| NADH dehydrogenase subunit B [Nocardioides sp. JS614]
gi|238065185|sp|A1SE28|NUOB_NOCSJ RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|119535446|gb|ABL80063.1| NADH dehydrogenase subunit B [Nocardioides sp. JS614]
Length = 184
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 76/153 (49%), Positives = 107/153 (69%), Gaps = 2/153 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G L+++V+ L + R S +FGLACCA+EMM + P++DL RFG RAS
Sbjct: 4 EEKLPSGVLLSTVEGLAGYMRKASFWPASFGLACCAIEMMTSGGPKHDLGRFGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+DVMIVAG ++ KMA LR++YDQMPEP++V++MG CA+ GG ++ +Y+VV+G D +
Sbjct: 64 PRQADVMIVAGRVSQKMAPVLRQIYDQMPEPKWVLAMGVCASSGGMFN-NYAVVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VPVD+Y+PGCPP + LI IL L K++
Sbjct: 123 VPVDMYLPGCPPRPQMLIDAILKLHDKVQHTKM 155
>gi|154508638|ref|ZP_02044280.1| hypothetical protein ACTODO_01139 [Actinomyces odontolyticus ATCC
17982]
gi|293191717|ref|ZP_06609274.1| NADH dehydrogenase I subunit B [Actinomyces odontolyticus F0309]
gi|153798272|gb|EDN80692.1| hypothetical protein ACTODO_01139 [Actinomyces odontolyticus ATCC
17982]
gi|292820489|gb|EFF79471.1| NADH dehydrogenase I subunit B [Actinomyces odontolyticus F0309]
Length = 184
Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 80/151 (52%), Positives = 114/151 (75%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G +TSV++++ AR S +T GLACCA+EMM A PR+D+ RFG RAS
Sbjct: 4 EESLPAGIALTSVEKVLGLARKYSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PR +D+MIV+G +++KMA +RRVYD MPEP++VISMG+CA+ GG ++ +Y+VV+GCD I
Sbjct: 64 PRHADMMIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFN-NYAVVQGCDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP EALI+ +L+L+++I +
Sbjct: 123 VPVDVYLPGCPPRPEALIHAVLVLREQIGKE 153
>gi|260887648|ref|ZP_05898911.1| NADH dehydrogenase I, B subunit [Selenomonas sputigena ATCC 35185]
gi|330838007|ref|YP_004412587.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sputigena ATCC
35185]
gi|260862664|gb|EEX77164.1| NADH dehydrogenase I, B subunit [Selenomonas sputigena ATCC 35185]
gi|329745771|gb|AEB99127.1| NADH-quinone oxidoreductase, B subunit [Selenomonas sputigena ATCC
35185]
Length = 169
Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 74/151 (49%), Positives = 105/151 (69%), Gaps = 1/151 (0%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQS 93
+ +VTSVD + WAR+ S+ + GLACC++EMM + R+DL RFG+ RA PRQ+
Sbjct: 12 RENVIVTSVDAVFKWARSRSIWPLASGLACCSIEMMATAASRFDLARFGYEVFRACPRQA 71
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
D++IVAGTLT KM L R+Y++MPEP+YVI+MG+C GG + SY+ V+ D ++PVD
Sbjct: 72 DLLIVAGTLTWKMTPPLIRLYEEMPEPKYVIAMGNCNIHGGPFTDSYATVKCLDEVLPVD 131
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+Y+PGCPP EALI ++ L+ KI+ K
Sbjct: 132 LYLPGCPPRPEALIDAMIKLRNKIQHPELAK 162
>gi|84494929|ref|ZP_00994048.1| NADH dehydrogenase beta subunit [Janibacter sp. HTCC2649]
gi|84384422|gb|EAQ00302.1| NADH dehydrogenase beta subunit [Janibacter sp. HTCC2649]
Length = 198
Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 74/152 (48%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E GF++T+++ + + R S+ TFGLACCA+EMM P YD+ RFG A+
Sbjct: 4 EEKLPAGFVLTTLESVAGYMRKASIWPATFGLACCAIEMMAVGTPDYDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++NKMA +R+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSNKMAPVVRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
+PVDIY+PGCPP E L+ I+ L +I+
Sbjct: 123 IPVDIYLPGCPPRPEMLLNAIIELHDQIQNSK 154
>gi|111022873|ref|YP_705845.1| NADH dehydrogenase subunit B [Rhodococcus jostii RHA1]
gi|122955232|sp|Q0S449|NUOB_RHOSR RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|110822403|gb|ABG97687.1| probable NADH dehydrogenase subunit B [Rhodococcus jostii RHA1]
Length = 184
Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats.
Identities = 79/150 (52%), Positives = 110/150 (73%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+ L + R GSL +FGLACCA+EMM + R+D+ RFG RAS
Sbjct: 4 EEKLPSGFLLTTVEGLAGYVRKGSLWPASFGLACCAIEMMATAGGRFDIARFGMEAFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L+ IL L +KI++
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILTLHEKIQQ 152
>gi|269218338|ref|ZP_06162192.1| NADH-quinone oxidoreductase, B subunit [Actinomyces sp. oral taxon
848 str. F0332]
gi|269212197|gb|EEZ78537.1| NADH-quinone oxidoreductase, B subunit [Actinomyces sp. oral taxon
848 str. F0332]
Length = 199
Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats.
Identities = 73/157 (46%), Positives = 110/157 (70%), Gaps = 2/157 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-P 86
+ + +G +TSV+ + WA T S +T GLACCA+EMM PR+D RFG
Sbjct: 14 QAPHDAGSQGVFLTSVEAVANWAVTNSQWPVTMGLACCAIEMMSFGTPRFDAARFGMEVF 73
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+D+MIV+G +++KMA +R +YD+M +P++V+SMG CA+ GG ++ +Y++V+GC
Sbjct: 74 RASPRQADLMIVSGRVSHKMAPVVRDIYDKMTDPKWVVSMGVCASSGGMFN-NYAIVQGC 132
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
D IVPVD+Y+PGCPP E LI +L L++ ++R +
Sbjct: 133 DHIVPVDVYLPGCPPRPEMLINAVLELREHVKRNRRL 169
>gi|315605129|ref|ZP_07880180.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon
180 str. F0310]
gi|315313165|gb|EFU61231.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon
180 str. F0310]
Length = 184
Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 114/151 (75%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G +TSV++++ AR S +T GLACCA+EMM A PR+D+ RFG RAS
Sbjct: 4 EESLPAGIALTSVEKVLGLARKYSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PR SD+MIV+G +++KMA +RRVYD MPEP++VISMG+CA+ GG ++ +Y+VV+GCD I
Sbjct: 64 PRHSDMMIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFN-NYAVVQGCDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP EALI+ +L+L+++I +
Sbjct: 123 VPVDVYLPGCPPRPEALIHAVLVLREQIGKE 153
>gi|300175569|emb|CBK20880.2| subunit NuoB (NDUFS7) [Blastocystis hominis]
Length = 220
Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats.
Identities = 93/162 (57%), Positives = 118/162 (72%), Gaps = 2/162 (1%)
Query: 23 DADFSRISSEITHKGF--LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
E VT+VD+++ + R GS+ TFGLACCA+EM+ AS R+D E
Sbjct: 52 PDQIPVSKGEKLDNAIEAAVTTVDKVIGYCRAGSVFPQTFGLACCAMEMIDASSARFDFE 111
Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
R G PRA+PRQ+D+MIV+GT+TNKMA A+RR+YDQM EPRYVISMGSCAN GGYY YSY
Sbjct: 112 RLGMIPRATPRQADLMIVSGTVTNKMAPAIRRLYDQMSEPRYVISMGSCANSGGYYAYSY 171
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
+VVRG DR+ PVD YVPGCPPTA+ L+Y IL++ KK+++
Sbjct: 172 NVVRGVDRLFPVDYYVPGCPPTADGLLYAILMVMKKLKQQKT 213
>gi|328952909|ref|YP_004370243.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans
DSM 11109]
gi|328453233|gb|AEB09062.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfobacca acetoxidans
DSM 11109]
Length = 162
Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats.
Identities = 75/147 (51%), Positives = 105/147 (71%), Gaps = 3/147 (2%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVA 99
+++++ R SL +TFGLACCA+EMM A R+DL+RFG R SPRQSD+MIVA
Sbjct: 13 AVLEEVLNLCRANSLWPITFGLACCAIEMMAAGASRFDLDRFGAGVFRPSPRQSDLMIVA 72
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVP 157
GT++ KMA + R+Y+QMP P++VI+MG+CA GG + Y Y++V G D+I+PVD+YVP
Sbjct: 73 GTISKKMADPVIRLYEQMPAPKWVIAMGNCAISGGPFLYEGQYAIVPGADQIIPVDVYVP 132
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GCPP E L+ GIL L++KI ++
Sbjct: 133 GCPPRPEGLLEGILQLEEKITNRPRLR 159
>gi|226365381|ref|YP_002783164.1| NADH dehydrogenase subunit B [Rhodococcus opacus B4]
gi|254767797|sp|C1AYM4|NUOB_RHOOB RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|226243871|dbj|BAH54219.1| NADH-quinone oxidoreductase chain B [Rhodococcus opacus B4]
Length = 184
Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats.
Identities = 79/150 (52%), Positives = 110/150 (73%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+T+V+ L + R GSL +FGLACCA+EMM + R+D+ RFG RAS
Sbjct: 4 EEKLPSGFLLTTVEGLAGYVRKGSLWPASFGLACCAIEMMATAGGRFDIARFGMEAFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L+ IL L +KI++
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILTLHEKIQQ 152
>gi|284039943|ref|YP_003389873.1| NADH-quinone oxidoreductase subunit beta [Spirosoma linguale DSM
74]
gi|283819236|gb|ADB41074.1| NADH-quinone oxidoreductase, B subunit [Spirosoma linguale DSM 74]
Length = 181
Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats.
Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 2/166 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
D + + GF TS D+++ AR SL + F +CC +E M YDL
Sbjct: 1 MATDIKLAEAPASYDGPGFSATSFDKIIGLARANSLWPLPFATSCCGIEFMSTMASHYDL 60
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG P SPRQ+D+++VAGT+ KM +++VY QM EPR+VI++G+CA+ GG +
Sbjct: 61 ARFGSERPSFSPRQADMLLVAGTIAKKMGPIVKQVYLQMAEPRWVIAIGACASSGGIF-D 119
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+YSV++G DRI+PVD+YVPGCPP E ++ G++ +Q+ + +
Sbjct: 120 TYSVLQGIDRIIPVDVYVPGCPPRPEQILEGVMQVQELAKNESLRR 165
>gi|296130550|ref|YP_003637800.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas flavigena DSM
20109]
gi|296022365|gb|ADG75601.1| NADH-quinone oxidoreductase, B subunit [Cellulomonas flavigena DSM
20109]
Length = 183
Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats.
Identities = 81/150 (54%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASP 90
E GFL+T+V+ LV + R SL +TFGLACCA+EMM A RYD+ R G RASP
Sbjct: 4 EEAPSGFLLTTVEDLVGYFRKASLWPVTFGLACCAIEMMAAGTSRYDISRLGMEVFRASP 63
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQSD+MIVAG ++ KMA +R+VYDQM P++V+SMG CA+ GG ++ +Y++V+G D IV
Sbjct: 64 RQSDLMIVAGRVSQKMAPIVRQVYDQMAGPKWVLSMGVCASSGGMFN-NYAIVQGVDHIV 122
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
PVDIY+PGCPP E L++ IL L ++I+
Sbjct: 123 PVDIYLPGCPPRPEMLLHAILALHQQIQDE 152
>gi|320095549|ref|ZP_08027213.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon
178 str. F0338]
gi|319977527|gb|EFW09206.1| NADH-quinone oxidoreductase subunit B [Actinomyces sp. oral taxon
178 str. F0338]
Length = 184
Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 114/151 (75%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G +TSV++++ AR S +T GLACCA+EMM A PR+D+ RFG RAS
Sbjct: 4 EESLPAGIALTSVEKVLGLARKHSQWPVTMGLACCAIEMMAAGTPRFDMARFGLEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PR SD+MIV+G +++KMA +RRVYD MPEP++VISMG+CA+ GG ++ +Y+VV+GCD I
Sbjct: 64 PRHSDLMIVSGRVSHKMAPIIRRVYDSMPEPKWVISMGACASSGGVFN-NYAVVQGCDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP EALI+ +L+L+++I +
Sbjct: 123 VPVDVYLPGCPPRPEALIHAVLVLREQIGKE 153
>gi|313126885|ref|YP_004037155.1| NADH dehydrogenase subunit b [Halogeometricum borinquense DSM
11551]
gi|312293250|gb|ADQ67710.1| NADH dehydrogenase subunit B [Halogeometricum borinquense DSM
11551]
Length = 236
Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 109/167 (65%), Gaps = 2/167 (1%)
Query: 15 SSCSLEKVDADFS-RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
+ + D F+ ++ F++T D + W R S+ + FG+ACC++EMM
Sbjct: 23 ARMTGSGADNRFNSKLREAFGSSPFILTKFDNFMNWVRGSSMFMLQFGIACCSIEMMHTY 82
Query: 74 MPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
++DL+RF PRASPRQ+DV+IV GT+ +K A ++RVYDQMPEP++V+ MGSC
Sbjct: 83 SVKHDLDRFAAGVPRASPRQADVIIVPGTIVSKFAPRMKRVYDQMPEPKFVVGMGSCTVS 142
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
GG + Y+V++G + ++PVDI+VPGCPP EALIYG+ LQ++I
Sbjct: 143 GGPFQEGYNVIKGAEEVIPVDIHVPGCPPRPEALIYGVAKLQQRIAE 189
>gi|326382762|ref|ZP_08204452.1| NADH dehydrogenase subunit B [Gordonia neofelifaecis NRRL B-59395]
gi|326198352|gb|EGD55536.1| NADH dehydrogenase subunit B [Gordonia neofelifaecis NRRL B-59395]
Length = 184
Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats.
Identities = 78/150 (52%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GF++++V+ L + R GSL TFGLACCA+EMM + RYDL RFG RAS
Sbjct: 4 EEQLPGGFVLSTVESLAGYFRKGSLWPATFGLACCAIEMMATTAGRYDLARFGMEAFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L+ IL L +I++
Sbjct: 123 VPVDIYLPGCPPRPEMLLNAILELHDQIQQ 152
>gi|55376749|ref|YP_134600.1| NADH dehydrogenase/oxidoreductase [Haloarcula marismortui ATCC
43049]
gi|55229474|gb|AAV44894.1| NADH dehydrogenase/oxidoreductase [Haloarcula marismortui ATCC
43049]
Length = 228
Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats.
Identities = 75/165 (45%), Positives = 110/165 (66%), Gaps = 2/165 (1%)
Query: 17 CSLEKVDADFSRISSE-ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
C + + F+ E + F++T D + W R S+ + FG+ACC +EMM
Sbjct: 18 CPGRRANDRFNSTLREVLGSSPFILTKFDTFLNWVRGSSMFVLQFGIACCTIEMMGTLAT 77
Query: 76 RYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
++DL+RF PRASPRQ+D++IV GT+ +K A ++RVYDQMPEP++V+SMGSC GG
Sbjct: 78 KHDLDRFAAGVPRASPRQADLIIVPGTIVSKFAPRMKRVYDQMPEPKFVVSMGSCTISGG 137
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+ Y+V++G ++++PVDI+VPGCPP EALIYGI LQ++I
Sbjct: 138 PFQEGYNVIKGAEQVIPVDIHVPGCPPRPEALIYGIAKLQERIAE 182
>gi|256422834|ref|YP_003123487.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM
2588]
gi|256037742|gb|ACU61286.1| NADH-quinone oxidoreductase, B subunit [Chitinophaga pinensis DSM
2588]
Length = 212
Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 102/157 (64%), Gaps = 2/157 (1%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
+ E + ++T+V L+ W R S+ FGL+CC VEM + +YD+ RFG
Sbjct: 18 NGSMEEAVSRSIMLTTVQDLLAWGRKNSMWPFHFGLSCCFVEMATSITSKYDVARFGAEV 77
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
R +PR++DVM++AGT+ KM ++R+++QM EPR+VISMGSCAN GG Y YSVV+G
Sbjct: 78 IRGTPREADVMVIAGTVFIKMVPIIKRLHEQMMEPRWVISMGSCANSGGMY-DIYSVVQG 136
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+ +PVD+YVPGCPP +A + G++LL + +
Sbjct: 137 VDKFLPVDVYVPGCPPRPDAFMQGLVLLGNSVGKEAR 173
>gi|296140852|ref|YP_003648095.1| NADH-quinone oxidoreductase subunit beta [Tsukamurella
paurometabola DSM 20162]
gi|296028986|gb|ADG79756.1| NADH-quinone oxidoreductase, B subunit [Tsukamurella paurometabola
DSM 20162]
Length = 184
Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats.
Identities = 76/151 (50%), Positives = 109/151 (72%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+ GFL+++++ + +AR GSL TFGLACCA+EMM + PR+D+ RFG RAS
Sbjct: 4 EDKVPGGFLLSTLETVAGYARKGSLWPATFGLACCAIEMMATTGPRFDIARFGMEAFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQM EP++V++MG CA+ GG ++ +Y+VV+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMAEPKWVLAMGVCASSGGMFN-NYAVVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVDIY+PGCPP E L+ ++ L K+
Sbjct: 123 VPVDIYLPGCPPRPEMLLNALIALHDKVADT 153
>gi|118467443|ref|YP_886423.1| NADH dehydrogenase subunit B [Mycobacterium smegmatis str. MC2 155]
gi|238065179|sp|A0QU35|NUOB_MYCS2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|118168730|gb|ABK69626.1| NADH-quinone oxidoreductase, B subunit [Mycobacterium smegmatis
str. MC2 155]
Length = 184
Score = 194 bits (492), Expect = 6e-48, Method: Composition-based stats.
Identities = 76/150 (50%), Positives = 109/150 (72%), Gaps = 2/150 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E G L+++V+ + + R GSL TFGLACCA+EMM + PR+D+ RFG A+
Sbjct: 4 EERLPGGILLSTVETVAGYVRKGSLWPATFGLACCAIEMMSTAGPRFDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR++YDQM EP++V++MG CA+ GG ++ +Y+VV+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQIYDQMVEPKWVLAMGVCASSGGMFN-NYAVVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
VPVDIY+PGCPP E L++ IL L KI++
Sbjct: 123 VPVDIYLPGCPPRPEMLLHAILKLHDKIQQ 152
>gi|325954435|ref|YP_004238095.1| NAD(P)H-quinone oxidoreductase subunit K [Weeksella virosa DSM
16922]
gi|323437053|gb|ADX67517.1| NAD(P)H-quinone oxidoreductase subunit K [Weeksella virosa DSM
16922]
Length = 191
Score = 194 bits (492), Expect = 6e-48, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 2/160 (1%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
+ +GF+ + ++V AR S+ + F +CC +E M +YDL RFG
Sbjct: 17 IDELPEGYQGEGFMAMQLSKVVGLARKNSIWPLPFATSCCGIEFMATMGSKYDLARFGSE 76
Query: 86 P-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
+PRQ D+++V GT++ KMA L++VY QM EPR+VI++G+CA+ GG + +YSV++
Sbjct: 77 RLAFTPRQCDLLMVMGTISKKMAPVLKQVYIQMAEPRWVIAVGACASSGGIF-DTYSVLQ 135
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
G D ++PVD+YVPGCPP E +I G++ +Q+ I +
Sbjct: 136 GIDEVIPVDVYVPGCPPRPEGIIEGVMRIQELIETESVRR 175
>gi|258514491|ref|YP_003190713.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum
acetoxidans DSM 771]
gi|257778196|gb|ACV62090.1| NADH-quinone oxidoreductase, B subunit [Desulfotomaculum
acetoxidans DSM 771]
Length = 175
Score = 194 bits (492), Expect = 6e-48, Method: Composition-based stats.
Identities = 75/146 (51%), Positives = 106/146 (72%), Gaps = 2/146 (1%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAP-RASPRQSDVMI 97
+ +++++ AR S+ M FGLACCA+E +M A+ PRYDL RFG+ R SPRQ+DVM+
Sbjct: 28 IGPLEKILNLARAHSMWPMAFGLACCAIEALMGATGPRYDLARFGYEVLRPSPRQADVMV 87
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
VAGT+T K A + R+Y+QMP+P++VI++GSCA GG + SY VV G D+++PVD+YVP
Sbjct: 88 VAGTITRKSAPFVVRLYEQMPDPKWVIAVGSCAISGGPFVDSYYVVPGADKLIPVDVYVP 147
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNV 183
GCPP EA+I G ++L+ KI V
Sbjct: 148 GCPPRPEAVIDGFIMLKNKILNPKVV 173
>gi|83814127|ref|YP_444539.1| NADH-quinone oxidoreductase chain b [Salinibacter ruber DSM 13855]
gi|294506285|ref|YP_003570343.1| NADH-quinone oxidoreductase chain B [Salinibacter ruber M8]
gi|123529616|sp|Q2S5J2|NUOB_SALRD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|83755521|gb|ABC43634.1| NADH-quinone oxidoreductase chain b [Salinibacter ruber DSM 13855]
gi|294342613|emb|CBH23391.1| NADH-quinone oxidoreductase chain B [Salinibacter ruber M8]
Length = 213
Score = 194 bits (492), Expect = 7e-48, Method: Composition-based stats.
Identities = 77/155 (49%), Positives = 108/155 (69%), Gaps = 2/155 (1%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRA 88
SS +GF T VD + WAR+ SLM M GLACCA+EMM + P+YD RFG R
Sbjct: 4 SSGTNGQGFFTTRVDTFLNWARSNSLMPMPMGLACCAIEMMGFAGPKYDSARFGSEAMRF 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPRQ+D+MIVAG + KM+ A+RRV+DQM +P++ I+MG+CA+ GG H Y VV+G D
Sbjct: 64 SPRQADLMIVAGWCSYKMSHAIRRVWDQMGDPKWCIAMGACASTGGM-HRCYGVVQGVDN 122
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
+PVD+Y+ GCPP E++++ ++ +Q+KIR +V
Sbjct: 123 FLPVDVYISGCPPRPESVLHALMDIQEKIRNEYSV 157
>gi|225850946|ref|YP_002731180.1| NADH dehydrogenase subunit B [Persephonella marina EX-H1]
gi|225646636|gb|ACO04822.1| NADH-quinone oxidoreductase chain b (nadh dehydrogenasei, chain b)
(ndh-1, chain b) [Persephonella marina EX-H1]
Length = 181
Score = 194 bits (492), Expect = 7e-48, Method: Composition-based stats.
Identities = 73/140 (52%), Positives = 108/140 (77%), Gaps = 1/140 (0%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+ G ++T+V+++++W R SL + GLACCA+EMM + R+D +R G R SPRQSD
Sbjct: 6 NNGIILTTVEEVLSWGRRNSLWPASVGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQSD 65
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
V+IVAGT+ NK+A L+ +YDQMP+P++VI+MG C++ GG + +Y+ ++G DRI+PVD+
Sbjct: 66 VLIVAGTVVNKVAPMLKLIYDQMPDPKWVIAMGGCSSAGGPFP-TYATLQGVDRIIPVDV 124
Query: 155 YVPGCPPTAEALIYGILLLQ 174
YVPGCPPT +AL++GIL LQ
Sbjct: 125 YVPGCPPTPQALLWGILELQ 144
>gi|72004758|ref|XP_780430.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase
[Strongylocentrotus purpuratus]
gi|115948827|ref|XP_001196650.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase
[Strongylocentrotus purpuratus]
Length = 132
Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats.
Identities = 105/126 (83%), Positives = 115/126 (91%)
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
MT GLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQM
Sbjct: 1 MTLGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 60
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
PEPR+VISMGSCANGGGYYHYSY+VVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKKI
Sbjct: 61 PEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKI 120
Query: 178 RRVGNV 183
+R N+
Sbjct: 121 KRAQNI 126
>gi|312139310|ref|YP_004006646.1| NADH dehydrogenase (quinone) chain b nuob [Rhodococcus equi 103S]
gi|325673384|ref|ZP_08153075.1| NADH-quinone oxidoreductase subunit B [Rhodococcus equi ATCC 33707]
gi|311888649|emb|CBH47961.1| NADH dehydrogenase (quinone) chain B NuoB [Rhodococcus equi 103S]
gi|325555405|gb|EGD25076.1| NADH-quinone oxidoreductase subunit B [Rhodococcus equi ATCC 33707]
Length = 190
Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats.
Identities = 81/151 (53%), Positives = 109/151 (72%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E GFL+++V+ + +AR GSL TFGLACCA+EMM + RYDL RFG RAS
Sbjct: 4 EEKVPGGFLLSTVETVAGYARKGSLWPATFGLACCAIEMMATTSGRYDLARFGMEAFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA LR+VYDQM EP++V++MG CA+ GG ++ +Y++V+G D +
Sbjct: 64 PRQADLMIVAGRVSQKMAPVLRQVYDQMVEPKWVLAMGVCASSGGMFN-NYAIVQGVDHV 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVDIY+PGCPP E L+ IL L KI+
Sbjct: 123 VPVDIYLPGCPPRPEMLLDAILALHAKIQDT 153
>gi|290559400|gb|EFD92732.1| NADH-quinone oxidoreductase, B subunit [Candidatus Parvarchaeum
acidophilus ARMAN-5]
Length = 172
Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats.
Identities = 66/141 (46%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGT 101
+D ++ W R+ SL +TFG +CCA+EMM + D +R G SPRQSD+++V+GT
Sbjct: 24 IDTVLNWGRSNSLWPLTFGTSCCAIEMMTFGATKVDSDRLGVLFVGDSPRQSDLILVSGT 83
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+T KMA L VY+QMP+P+YVI++G+C GG YH SY+ + G DRI+PVD +VPGCPP
Sbjct: 84 ITKKMARRLLNVYEQMPDPKYVIAVGACNISGGLYHDSYNTIDGIDRIMPVDAFVPGCPP 143
Query: 162 TAEALIYGILLLQKKIRRVGN 182
E + + +LQK I+ +
Sbjct: 144 RPEEFLDAVRVLQKLIKENKS 164
>gi|22002572|gb|AAM82723.1| NdhK [Synechococcus elongatus PCC 7942]
Length = 235
Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 6/160 (3%)
Query: 23 DADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERF 82
A I+ ++ ++T++D L WAR SL + +G ACC +E R+D +RF
Sbjct: 12 PAAPPEITQGLSE-NVILTTLDDLYNWARLSSLWPLMYGTACCFIEFAALIGSRFDFDRF 70
Query: 83 GFAPRASP--RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YS 139
+ + R D V +T KMA AL R+Y+QMPEP+YVI+MG+C GG + S
Sbjct: 71 AWCLVVASAGRFVDHKPV--PVTMKMAPALVRLYEQMPEPKYVIAMGACTITGGMFSADS 128
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+ VRG D+++PVD+Y+PGCPP EA+I I+ L+KK+
Sbjct: 129 TTTVRGVDKLLPVDVYIPGCPPRPEAIIDAIVKLRKKVAN 168
>gi|322801771|gb|EFZ22368.1| hypothetical protein SINV_15858 [Solenopsis invicta]
Length = 189
Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats.
Identities = 94/154 (61%), Positives = 111/154 (72%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
+ ++ + +S + + VD ++ W R GSL MTFGLAC
Sbjct: 36 ATESSVQEAKTPLPGKPKVEPYSPFQGTDNTAEYALARVDDILNWGRKGSLWPMTFGLAC 95
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDV+IVAGTLTNKMA ALR++YDQMPEPR+VI
Sbjct: 96 CAVEMMHIAAPRYDMDRFGVVFRASPRQSDVIIVAGTLTNKMAPALRKIYDQMPEPRWVI 155
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
SMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPG
Sbjct: 156 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 189
>gi|227488707|ref|ZP_03919023.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC
51867]
gi|227542294|ref|ZP_03972343.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC
51866]
gi|227091368|gb|EEI26680.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC
51867]
gi|227181894|gb|EEI62866.1| NADH dehydrogenase subunit B [Corynebacterium glucuronolyticum ATCC
51866]
Length = 189
Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats.
Identities = 74/154 (48%), Positives = 104/154 (67%), Gaps = 2/154 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRAS 89
+ G+L T+ + L R S+ TFGLACCA EMM + PRYD R+G RAS
Sbjct: 4 EDNLKGGYLTTTTEWLFGLTREWSVWPATFGLACCAFEMMSYAGPRYDSSRWGQEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D++IV+G ++ KMA +RRVYDQMP+P++VI+MG+C++ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLLIVSGRVSQKMAPIMRRVYDQMPDPKWVIAMGACSSSGGIFN-NYAIVQGADHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVD+YVPGCPP E LI L+ I + V
Sbjct: 123 VPVDVYVPGCPPRPEMLIDASFKLRAIIAKQTKV 156
>gi|149034568|gb|EDL89305.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_a
[Rattus norvegicus]
Length = 210
Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats.
Identities = 100/156 (64%), Positives = 117/156 (75%), Gaps = 5/156 (3%)
Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG 61
G + Q +S + ++ + R + ++VT +D L+ WAR SL MTFG
Sbjct: 36 GSPSSTQSAVSKAGAGAVVPKPSHLPR-----SRAEYVVTKLDDLINWARRSSLWPMTFG 90
Query: 62 LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
LACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQMPEPR
Sbjct: 91 LACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPR 150
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
YV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP
Sbjct: 151 YVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 186
>gi|300114494|ref|YP_003761069.1| NADH-quinone oxidoreductase subunit B [Nitrosococcus watsonii
C-113]
gi|299540431|gb|ADJ28748.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus watsonii
C-113]
Length = 212
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 79/175 (45%), Positives = 113/175 (64%), Gaps = 6/175 (3%)
Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
++ Q++ S+E+ F + + L + LV W R SL FGL+CC VE
Sbjct: 4 RLSKPQTAASVEQSKGSF----EDAIRRNLLFARLQDLVAWGRKNSLWPYNFGLSCCYVE 59
Query: 69 MMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
M + +YD+ RFG RA+PR++D+M+++GT+ KMA ++R+Y+QM EPR+VISMG
Sbjct: 60 MATSFTSKYDIARFGAEVIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMG 119
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
SCAN GG Y YSVV+G D+ +PVD+YVPGCPP +AL+ G+LLLQ+ I R
Sbjct: 120 SCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPDALLEGLLLLQEAIGREQR 173
>gi|188996814|ref|YP_001931065.1| NADH-quinone oxidoreductase, B subunit [Sulfurihydrogenibium sp.
YO3AOP1]
gi|238065219|sp|B2V988|NUOB_SULSY RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|188931881|gb|ACD66511.1| NADH-quinone oxidoreductase, B subunit [Sulfurihydrogenibium sp.
YO3AOP1]
Length = 171
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 75/143 (52%), Positives = 109/143 (76%), Gaps = 1/143 (0%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+T G ++T+V+++++W R SL ++ GLACCA+EMM + R+D +R G R SPR
Sbjct: 2 AMTSSGIILTTVEEVLSWGRRNSLWPVSVGLACCAIEMMHTAASRFDTDRLGIIFRGSPR 61
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
QSDV+IVAGT+ NK+A LR +Y+QMP+P++VISMG CA+ GG + +Y ++G DRI+P
Sbjct: 62 QSDVLIVAGTVVNKVAPMLRLIYEQMPDPKWVISMGGCASAGGPFP-TYPTLQGVDRIIP 120
Query: 152 VDIYVPGCPPTAEALIYGILLLQ 174
VD+Y+PGCPPT +AL++GIL LQ
Sbjct: 121 VDVYIPGCPPTPQALLWGILELQ 143
>gi|197121690|ref|YP_002133641.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. K]
gi|238065027|sp|B4UIA7|NUOB2_ANASK RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|196171539|gb|ACG72512.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. K]
Length = 182
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
+GFL V + + WAR SL F ACC +E M + RYD +RFG A R SPRQ+D
Sbjct: 19 EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+++V GT+ K A L+RVY+QM +P++V++ G CA+ GG ++ +Y+ V+G DR++PVD+
Sbjct: 79 LLMVVGTVNCKQAPILQRVYEQMADPKWVMAFGVCASSGG-FYDNYATVQGIDRVIPVDV 137
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVG 181
YVPGCPP E ++ GI+LLQKKI+
Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQNQS 164
>gi|86158994|ref|YP_465779.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
gi|123498614|sp|Q2IL09|NUOB2_ANADE RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|85775505|gb|ABC82342.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
Length = 173
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 84/141 (59%), Positives = 104/141 (73%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ +D L+ AR SL ++TFGLACC +E+MQ PR DL RFG PRASPRQ+D MIVA
Sbjct: 18 TSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADLMRFGAIPRASPRQADFMIVA 77
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GTLT KMA R +YDQMPEP+YVISMGSC+N GG + YSV +G D+++PVD+YVPGC
Sbjct: 78 GTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGC 137
Query: 160 PPTAEALIYGILLLQKKIRRV 180
PP EAL G+L LQ+ +R
Sbjct: 138 PPRPEALTEGLLRLQEIVRSE 158
>gi|86158991|ref|YP_465776.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
gi|123498617|sp|Q2IL12|NUOB1_ANADE RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|85775502|gb|ABC82339.1| NADH dehydrogenase subunit B [Anaeromyxobacter dehalogenans 2CP-C]
Length = 182
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
+GFL V + + WAR SL F ACC +E M + RYD +RFG A R SPRQ+D
Sbjct: 19 EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+++V GT+ K A L+R+Y+QM +P++V++ G CA+ GG ++ +Y+ V+G DRI+PVD+
Sbjct: 79 LLMVVGTVNCKQAPILQRIYEQMADPKWVMAFGVCASSGG-FYDNYATVQGIDRIIPVDV 137
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVG 181
YVPGCPP E ++ GI+LLQKKI+
Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQNQS 164
>gi|226227808|ref|YP_002761914.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27]
gi|226090999|dbj|BAH39444.1| NADH-quinone oxidoreductase chain B [Gemmatimonas aurantiaca T-27]
Length = 171
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 73/146 (50%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDV 95
+L T D+LV WAR SL F ACCA+E M S YD +RFG PR SPRQ+D+
Sbjct: 19 EYLTTRKDELVGWARKFSLFPYPFVTACCAMEFMAVSASAYDTDRFGAALPRFSPRQADL 78
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
++V GT+T K A L +VY+QM EP++V++ G CA+ GG ++ +Y+ + G DRI+PVDIY
Sbjct: 79 LMVVGTVTQKQAPILLKVYEQMCEPKWVMAFGVCASTGG-FYQNYASLPGIDRIIPVDIY 137
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181
VPGCPP E +I GI+ LQ+KI
Sbjct: 138 VPGCPPRPEMVIDGIMRLQEKIANGR 163
>gi|220916486|ref|YP_002491790.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter
dehalogenans 2CP-1]
gi|238065052|sp|B8JH22|NUOB_ANAD2 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|219954340|gb|ACL64724.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 182
Score = 192 bits (489), Expect = 2e-47, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSD 94
+GFL V + + WAR SL F ACC +E M + RYD +RFG A R SPRQ+D
Sbjct: 19 EGFLQGLVSKSLGWARKYSLFTYPFVTACCGMEYMTMASARYDSDRFGAAMPRFSPRQAD 78
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+++V GT+ K A L+RVY+QM +P++V++ G CA+ GG ++ +Y+ V+G DR++PVD+
Sbjct: 79 LLMVVGTVNCKQAPILQRVYEQMADPKWVMAFGVCASSGG-FYDNYATVQGIDRVIPVDV 137
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVG 181
YVPGCPP E ++ GI+LLQKKI+
Sbjct: 138 YVPGCPPRPEQVLDGIMLLQKKIQNQS 164
>gi|153004158|ref|YP_001378483.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. Fw109-5]
gi|238065026|sp|A7H9V3|NUOB2_ANADF RecName: Full=NADH-quinone oxidoreductase subunit B 2; AltName:
Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|152027731|gb|ABS25499.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp.
Fw109-5]
Length = 183
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 73/144 (50%), Positives = 102/144 (70%), Gaps = 2/144 (1%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSD 94
+GFL V + + WAR SL F ACC +E M + RYDL+RFG PR SPRQ+D
Sbjct: 19 QGFLQGLVSKGLGWARKYSLFQYPFVTACCGMEFMTVASARYDLDRFGAALPRFSPRQAD 78
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
++IV GT+ K A LRRVY+Q+ EP++V++ G CA+ GG ++ +Y+ V+G DRIVPVD+
Sbjct: 79 LLIVVGTVNCKQAPILRRVYEQIAEPKWVVAFGVCASSGG-FYDNYATVQGIDRIVPVDV 137
Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
Y+PGCPP E ++ GI+LLQ+KI+
Sbjct: 138 YIPGCPPRPEQVLDGIMLLQQKIQ 161
>gi|197121687|ref|YP_002133638.1| NADH dehydrogenase subunit B [Anaeromyxobacter sp. K]
gi|220916483|ref|YP_002491787.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter
dehalogenans 2CP-1]
gi|238065005|sp|B4UIA4|NUOB1_ANASK RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|196171536|gb|ACG72509.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter sp. K]
gi|219954337|gb|ACL64721.1| NADH-quinone oxidoreductase, B subunit [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 173
Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats.
Identities = 83/141 (58%), Positives = 104/141 (73%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ +D L+ AR SL ++TFGLACC +E+MQ PR D+ RFG PRASPRQ+D MIVA
Sbjct: 18 TSQLDNLINLARASSLYYLTFGLACCGIELMQTGGPRADVMRFGAIPRASPRQADFMIVA 77
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GTLT KMA R +YDQMPEP+YVISMGSC+N GG + YSV +G D+++PVD+YVPGC
Sbjct: 78 GTLTYKMAERARLLYDQMPEPKYVISMGSCSNCGGLFQLGYSVCKGVDKVIPVDVYVPGC 137
Query: 160 PPTAEALIYGILLLQKKIRRV 180
PP EAL G+L LQ+ +R
Sbjct: 138 PPRPEALTEGLLRLQEIVRSE 158
>gi|256831780|ref|YP_003160507.1| NADH-quinone oxidoreductase, B subunit [Jonesia denitrificans DSM
20603]
gi|256685311|gb|ACV08204.1| NADH-quinone oxidoreductase, B subunit [Jonesia denitrificans DSM
20603]
Length = 183
Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats.
Identities = 75/153 (49%), Positives = 109/153 (71%), Gaps = 2/153 (1%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PR 87
++ + + GF S++ + R GS+ +TFGLACCA+EMM + R+D+ RFG R
Sbjct: 1 MAHDDSTPGFFTASLEDVAGLFRKGSMWPVTFGLACCAIEMMATASSRFDVARFGMEVFR 60
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
ASPRQ+D+MIVAG ++ KMA +R+VYDQM EP++V+SMG CA+ GG ++ +Y++V+G D
Sbjct: 61 ASPRQADLMIVAGRVSQKMAPVVRQVYDQMAEPKWVLSMGVCASSGGMFN-NYAIVQGVD 119
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
IVPVDIY+PGCPP E LI +L L K+++
Sbjct: 120 HIVPVDIYLPGCPPRPEMLINAMLELHKQVQEQ 152
>gi|148699632|gb|EDL31579.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_a [Mus
musculus]
Length = 199
Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats.
Identities = 96/124 (77%), Positives = 107/124 (86%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ ++VT +D L+ WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+
Sbjct: 69 SRAEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 128
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVD
Sbjct: 129 DVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVD 188
Query: 154 IYVP 157
IYVP
Sbjct: 189 IYVP 192
>gi|167740356|ref|ZP_02413130.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 14]
gi|167817572|ref|ZP_02449252.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 91]
gi|167825975|ref|ZP_02457446.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 9]
gi|167896050|ref|ZP_02483452.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 7894]
gi|167912696|ref|ZP_02499787.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 112]
gi|167920662|ref|ZP_02507753.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei BCC215]
gi|226192982|ref|ZP_03788593.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei Pakistan 9]
gi|237813963|ref|YP_002898414.1| NADH-quinone oxidoreductase subunit b (NADH dehydrogenase i subunit
b) (ndh-1 subunit b) [Burkholderia pseudomallei MSHR346]
gi|225934952|gb|EEH30928.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei Pakistan 9]
gi|237506107|gb|ACQ98425.1| NADH-quinone oxidoreductase subunit b (NADH dehydrogenase i subunit
b) (ndh-1 subunit b) [Burkholderia pseudomallei MSHR346]
Length = 167
Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats.
Identities = 106/151 (70%), Positives = 125/151 (82%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ GF+VT++D + A+ SL +MTFGLACCAVEMM A+ RYD++RFG PRASPR
Sbjct: 7 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLACCAVEMMHAAGARYDMDRFGMIPRASPR 66
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVP
Sbjct: 67 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVP 126
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VD+YVPGCPPTAEAL+YG++ LQ+K+
Sbjct: 127 VDVYVPGCPPTAEALVYGLMQLQRKVAERST 157
>gi|327403945|ref|YP_004344783.1| NADH dehydrogenase subunit B [Fluviicola taffensis DSM 16823]
gi|327319453|gb|AEA43945.1| NADH dehydrogenase subunit B [Fluviicola taffensis DSM 16823]
Length = 182
Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 104/155 (67%), Gaps = 2/155 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-S 89
I +GF +T +D+++ AR S+ + F +CC +E M YD+ RFG + S
Sbjct: 11 ETINGEGFQLTLLDKVIGAARANSVWPLPFATSCCGIEYMGTMGSNYDVARFGMERMSFS 70
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D++IVAGT++ K+A L++VY+QM EP++V+S+G+CA+ GG + +YSV++G DR+
Sbjct: 71 PRQADLLIVAGTISKKLAPILKQVYEQMAEPKWVLSVGACASSGGIF-DTYSVLQGIDRV 129
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PVD+YVPGCPP E +I G + + + ++ +
Sbjct: 130 IPVDVYVPGCPPRPEQIIEGCMNIHRLVKSESLRR 164
>gi|242278962|ref|YP_002991091.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio salexigens
DSM 2638]
gi|242121856|gb|ACS79552.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio salexigens
DSM 2638]
Length = 179
Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 69/141 (48%), Positives = 97/141 (68%), Gaps = 3/141 (2%)
Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTL 102
+ + R+ SL MTFGLACCA+EMM M R+D+ RFG R S RQ+D+MIVAGT+
Sbjct: 25 EDAMNICRSMSLWPMTFGLACCAIEMMAVGMARFDMARFGAEVFRPSARQADLMIVAGTV 84
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDIYVPGCP 160
T KMA A+ R+Y+QMP P++V+++G+CA GG + Y +V G D ++PVD+YVPGCP
Sbjct: 85 TKKMAPAVVRLYEQMPAPKWVLALGNCAISGGPFKFKGQYGIVEGVDNLIPVDVYVPGCP 144
Query: 161 PTAEALIYGILLLQKKIRRVG 181
P EAL+ G+ +Q+K+
Sbjct: 145 PRPEALLEGLFQIQEKVTGKR 165
>gi|156351435|ref|XP_001622510.1| hypothetical protein NEMVEDRAFT_v1g220626 [Nematostella vectensis]
gi|156209067|gb|EDO30410.1| predicted protein [Nematostella vectensis]
Length = 133
Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 102/121 (84%), Positives = 113/121 (93%)
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALR+VYDQM
Sbjct: 1 MTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQM 60
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
PEPR+VISMGSCANGGGYYHYSYSVVRGCDR++PVDIYVPGCPPTAEAL+YG+L LQKK+
Sbjct: 61 PEPRWVISMGSCANGGGYYHYSYSVVRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKV 120
Query: 178 R 178
R
Sbjct: 121 R 121
>gi|322819469|gb|EFZ26582.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor, putative [Trypanosoma cruzi]
Length = 189
Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 84/137 (61%), Positives = 110/137 (80%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
++ L W T SL +TFGLACCAVEMM A RYDL+RFG PR +PRQ++++IV+GT
Sbjct: 42 TLHDLTEWCLTYSLWPLTFGLACCAVEMMHAYAARYDLDRFGIVPRPTPRQAEIIIVSGT 101
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 102 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 161
Query: 162 TAEALIYGILLLQKKIR 178
+AE+L++ + LQKKIR
Sbjct: 162 SAESLVFCLHTLQKKIR 178
>gi|71410632|ref|XP_807601.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor [Trypanosoma cruzi strain CL
gi|71652884|ref|XP_815090.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor [Trypanosoma cruzi strain CL
gi|70871638|gb|EAN85750.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor, putative [Trypanosoma cruzi]
gi|70880118|gb|EAN93239.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor, putative [Trypanosoma cruzi]
Length = 202
Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 84/137 (61%), Positives = 110/137 (80%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
++ L W T SL +TFGLACCAVEMM A RYDL+RFG PR +PRQ++++IV+GT
Sbjct: 55 TLHDLTEWCLTYSLWPLTFGLACCAVEMMHAYAARYDLDRFGIVPRPTPRQAEIIIVSGT 114
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174
Query: 162 TAEALIYGILLLQKKIR 178
+AE+L++ + LQKKIR
Sbjct: 175 SAESLVFCLHTLQKKIR 191
>gi|300775173|ref|ZP_07085035.1| NADH-quinone oxidoreductase subunit B [Chryseobacterium gleum ATCC
35910]
gi|300505913|gb|EFK37049.1| NADH-quinone oxidoreductase subunit B [Chryseobacterium gleum ATCC
35910]
Length = 186
Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 64/167 (38%), Positives = 100/167 (59%), Gaps = 7/167 (4%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ V + +GF T + ++ AR SL + F +CC +E M P YD
Sbjct: 5 KPVIRTDAPAPEGYEGEGFFATKLSSVIGMARKFSLWPLPFATSCCGIEFMATLNPTYDA 64
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG SPRQ+D+++V GT++ K+ L+ VY QM EP++V+++G+CA+ GG +
Sbjct: 65 SRFGMERNSFSPRQADMLMVCGTISKKLGPVLKEVYTQMAEPKWVVAVGACASSGGIF-D 123
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ-----KKIRRV 180
+YSV++G D+I+PVD+YVPGCPP E +I G++ +Q + IRR
Sbjct: 124 TYSVLQGIDKIIPVDVYVPGCPPRPEQIIEGVMQVQALAESESIRRR 170
>gi|255019940|ref|ZP_05292014.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus
ATCC 51756]
gi|254970599|gb|EET28087.1| NADH-ubiquinone oxidoreductase chain B [Acidithiobacillus caldus
ATCC 51756]
Length = 162
Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 78/145 (53%), Positives = 105/145 (72%), Gaps = 2/145 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
L +D+L+ W+R GSL + FG +CC +EM+ A PR+D+ RFG R+SPRQ+DV
Sbjct: 9 SLLAGKLDELIAWSRAGSLWPLNFGTSCCFIEMVAAVTPRHDIARFGAEVLRSSPRQADV 68
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
+I +GT+ KMA + +Y QM EP++VISMGSCAN GG Y YSV++G D+I+PVD+Y
Sbjct: 69 LICSGTVFAKMAPMIVEIYAQMLEPKWVISMGSCANSGGMY-DVYSVIQGLDQILPVDVY 127
Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
VPGCPP EAL G+LLLQ+KIR+
Sbjct: 128 VPGCPPRPEALTDGLLLLQRKIRQR 152
>gi|108758077|ref|YP_630950.1| NADH dehydrogenase subunit B [Myxococcus xanthus DK 1622]
gi|123247854|sp|Q1D8S3|NUOB_MYXXD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|108461957|gb|ABF87142.1| NADH dehydrogenase I, B subunit [Myxococcus xanthus DK 1622]
Length = 187
Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 65/145 (44%), Positives = 99/145 (68%), Gaps = 2/145 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
G+L + V + + WAR SL + ACC +E M + R+D+ RFG R SPRQ+D+
Sbjct: 19 GWLQSIVSKGLGWARKYSLFTYPYATACCGMEYMSVAASRHDISRFGAEFPRFSPRQADL 78
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
++V GT+ K A L+RVY+QM EP++V++ G CA+ GG ++ +Y+V++G DRI+PVD+Y
Sbjct: 79 LMVVGTINLKQAPILKRVYEQMAEPKWVVAFGVCASSGG-FYDNYAVLQGIDRIIPVDVY 137
Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
+PGCPP E ++ G++LLQ KI
Sbjct: 138 IPGCPPRPEQVLDGLMLLQDKIGNQ 162
>gi|292492188|ref|YP_003527627.1| NADH-quinone oxidoreductase subunit beta [Nitrosococcus halophilus
Nc4]
gi|291580783|gb|ADE15240.1| NADH-quinone oxidoreductase, B subunit [Nitrosococcus halophilus
Nc4]
Length = 212
Score = 191 bits (485), Expect = 5e-47, Method: Composition-based stats.
Identities = 76/174 (43%), Positives = 112/174 (64%), Gaps = 6/174 (3%)
Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
+ +++ S+E+ F + + L + L+ W R S+ FGL+CC VEM
Sbjct: 5 LSKPKTAASIEQSKGSF----EDAIRRNLLFARLQDLIAWGRKNSIWPFNFGLSCCYVEM 60
Query: 70 MQASMPRYDLERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
+ +YDL RFG RA+PR++D+M+++GT+ KMA ++R+Y+QM EPR+VISMGS
Sbjct: 61 ATSFTSKYDLGRFGSEIIRATPREADLMVISGTVFIKMAPVIKRLYEQMMEPRWVISMGS 120
Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
CAN GG Y YSVV+G D+ +PVD+YVPGCPP +AL+ G+LLLQ+ I +
Sbjct: 121 CANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPDALLEGLLLLQEAIGKEQR 173
>gi|317153001|ref|YP_004121049.1| NADH-quinone oxidoreductase subunit B [Desulfovibrio aespoeensis
Aspo-2]
gi|316943252|gb|ADU62303.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio aespoeensis
Aspo-2]
Length = 181
Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats.
Identities = 75/145 (51%), Positives = 98/145 (67%), Gaps = 3/145 (2%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIV 98
+ L R+ SL MTFGLACCA+EMM M R+D+ RFG R SPRQSDVMIV
Sbjct: 27 LKLAQDLFDVCRSMSLWPMTFGLACCAIEMMATGMARFDMARFGAEVFRPSPRQSDVMIV 86
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYV 156
AGT+T KMA A+ R+Y+QMP P++VI+MG+CA GG + +Y+V+ G D ++PVD+YV
Sbjct: 87 AGTVTKKMAPAVVRLYEQMPGPKWVIAMGNCAISGGPFKIKDNYNVIEGVDTLIPVDVYV 146
Query: 157 PGCPPTAEALIYGILLLQKKIRRVG 181
PGCPP E L+ G LQ++I
Sbjct: 147 PGCPPRPEGLLEGFFQLQRQITGKR 171
>gi|162148253|ref|YP_001602714.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl
5]
gi|209542893|ref|YP_002275122.1| NADH dehydrogenase subunit B [Gluconacetobacter diazotrophicus PAl
5]
gi|238065010|sp|A9HN98|NUOB1_GLUDA RecName: Full=NADH-quinone oxidoreductase subunit B 1; AltName:
Full=NADH dehydrogenase I subunit B 1; AltName:
Full=NDH-1 subunit B 1
gi|161786830|emb|CAP56413.1| putative NADH-quinone oxidoreductase chain B [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530570|gb|ACI50507.1| NADH-quinone oxidoreductase, B subunit [Gluconacetobacter
diazotrophicus PAl 5]
Length = 211
Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats.
Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 2/168 (1%)
Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
+ E+ +E + ++ + V+W + S+ FGL+CC VEM A
Sbjct: 6 TRPGEEPGTPRDATMTETVKRNLVMGRLQDFVSWGQKNSIWPFNFGLSCCYVEMATAFTS 65
Query: 76 RYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
+YD+ RFG RA+PR++D+++++GT+ KMA ++ +YDQM EPR+VISMGSCAN GG
Sbjct: 66 KYDIARFGSEVLRATPREADLIVISGTVFVKMAPIVKYLYDQMLEPRWVISMGSCANSGG 125
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
Y YSVV+G D +PVD+YVPGCPP +AL+ G++LLQ +
Sbjct: 126 MY-DIYSVVQGVDSFLPVDVYVPGCPPRPDALLEGLMLLQDSVGTQRR 172
>gi|301631485|ref|XP_002944828.1| PREDICTED: NADH-quinone oxidoreductase subunit B-like [Xenopus
(Silurana) tropicalis]
Length = 164
Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats.
Identities = 103/138 (74%), Positives = 117/138 (84%), Gaps = 1/138 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+ +GF+ TS D +V WA+TGS+ MTFGLACCAVEMM A+ RYDL RFG RAS
Sbjct: 3 EGVMKEGFVTTSYDAVVNWAKTGSIWPMTFGLACCAVEMMHAASARYDLARFGAEVFRAS 62
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSD+MIVAGTL NKMA A+R+VYDQM EPR+V+SMGSCANGGGYYHYSYSVVRGCDR+
Sbjct: 63 PRQSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRV 122
Query: 150 VPVDIYVPGCPPTAEALI 167
VPVD+YVPGCPPTAEALI
Sbjct: 123 VPVDVYVPGCPPTAEALI 140
>gi|51892725|ref|YP_075416.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM
14863]
gi|51856414|dbj|BAD40572.1| NADH dehydrogenase I subunit B [Symbiobacterium thermophilum IAM
14863]
Length = 153
Score = 190 bits (484), Expect = 6e-47, Method: Composition-based stats.
Identities = 73/144 (50%), Positives = 110/144 (76%), Gaps = 3/144 (2%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ-ASMPRYDLERFGFA-PRASPRQSDVM 96
+ T+VD + WA++ S+ +TFGLACCA+EMM AS PRYD+ RFG RASPRQ+D++
Sbjct: 1 MTTTVDSFLRWAQSNSIWPLTFGLACCAIEMMNLASGPRYDIARFGSEAFRASPRQADLI 60
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
++G ++NKMA ++RVY QM EP++V++ G+CA+ GG + +Y++++G D ++PVDIYV
Sbjct: 61 FISGRVSNKMAPVIKRVYSQMLEPKWVVAFGACASSGGIF-DNYAIMQGVDNLLPVDIYV 119
Query: 157 PGCPPTAEALIYGILLLQKKIRRV 180
PGCPPT EA+IY + L+ +IR+
Sbjct: 120 PGCPPTPEAVIYAVQKLRDRIRKE 143
>gi|313679548|ref|YP_004057287.1| NADH dehydrogenase subunit b [Oceanithermus profundus DSM 14977]
gi|313152263|gb|ADR36114.1| NADH dehydrogenase subunit B [Oceanithermus profundus DSM 14977]
Length = 184
Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats.
Identities = 71/136 (52%), Positives = 99/136 (72%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
+ S+ + ++ ++D L+ AR+ S+ +TFG+ACCA+EMM P+ D +RFG R
Sbjct: 4 LGSDERPRDIILGTLDDLINMARSRSMWPLTFGIACCAIEMMATWDPKIDADRFGMFFRN 63
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
+PRQ+DVMIV+GT+ K+A LRR+YDQM EP++VISMG+CAN GG + YSVV G D+
Sbjct: 64 TPRQADVMIVSGTVNKKLAKRLRRLYDQMAEPKWVISMGACANQGGPFRQGYSVVEGVDK 123
Query: 149 IVPVDIYVPGCPPTAE 164
IVPVD+Y+PGCPP E
Sbjct: 124 IVPVDVYIPGCPPRPE 139
>gi|118579068|ref|YP_900318.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
2379]
gi|118580047|ref|YP_901297.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
2379]
gi|118581593|ref|YP_902843.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
2379]
gi|218528002|sp|A1ALP0|NUOB_PELPD RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|118501778|gb|ABK98260.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379]
gi|118502757|gb|ABK99239.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379]
gi|118504303|gb|ABL00786.1| NADH dehydrogenase subunit B [Pelobacter propionicus DSM 2379]
Length = 163
Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-APRASPR 91
+ +L T D+L+ W R S+ F ACC +E M + YD +RFG PR +PR
Sbjct: 1 MAMMEYLTTRKDELIGWVRKFSIFPYPFVTACCGMEFMAVASTLYDTDRFGAALPRFTPR 60
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
QSD+++V GT+T+K A ++RVYDQM +P++V++ G+CA GG Y +Y+V++G DRI+P
Sbjct: 61 QSDLLMVVGTITHKEAPVIKRVYDQMCDPKWVMAFGACATSGGVYR-NYTVLQGVDRIIP 119
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
VDIY+PGCPP E +I I+ LQ KI
Sbjct: 120 VDIYIPGCPPRPEMVIDAIMKLQDKIAGER 149
>gi|313206215|ref|YP_004045392.1| NADH dehydrogenase subunit b [Riemerella anatipestifer DSM 15868]
gi|312445531|gb|ADQ81886.1| NADH dehydrogenase subunit B [Riemerella anatipestifer DSM 15868]
gi|315023100|gb|EFT36113.1| NADH dehydrogenase subunit B [Riemerella anatipestifer RA-YM]
gi|325336338|gb|ADZ12612.1| NADH:ubiquinone oxidoreductase 20 kD subunit related Fe-S
oxidoreductases [Riemerella anatipestifer RA-GD]
Length = 184
Score = 190 bits (482), Expect = 9e-47, Method: Composition-based stats.
Identities = 67/162 (41%), Positives = 105/162 (64%), Gaps = 5/162 (3%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQAS 73
S+ + K DA + +GF T + L+ AR+ SL + F +CC +E M +
Sbjct: 1 MSNKPIIKTDAP---APPGYSGEGFFATKLSSLIGMARSYSLWPLPFATSCCGIEFMAMA 57
Query: 74 MPRYDLERFGFAPRA-SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
MP YD+ RFG + SPRQ+D ++V GT++ K+A L++VY QM EP++VI++G+CA+
Sbjct: 58 MPTYDMARFGAERMSFSPRQADCLLVCGTISKKLAPVLKQVYSQMAEPKWVIAVGACASS 117
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
GG + +YSV++G D+I+PVD+YVPGCPP E ++ G + +Q
Sbjct: 118 GGIF-DTYSVLQGIDKIIPVDVYVPGCPPRPEQILEGFMQVQ 158
>gi|90579190|ref|ZP_01235000.1| NADH dehydrogenase beta subunit [Vibrio angustum S14]
gi|90440023|gb|EAS65204.1| NADH dehydrogenase beta subunit [Vibrio angustum S14]
Length = 183
Score = 190 bits (482), Expect = 1e-46, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 104/141 (73%), Gaps = 2/141 (1%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
+V VD L++++R SL FG +CC VEMM A+ PRYD+ RFG R SPRQSDV+I
Sbjct: 25 IVGKVDDLISYSRKHSLWPYNFGTSCCFVEMMTAATPRYDMARFGSEVLRGSPRQSDVLI 84
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
AGT KMA ++ +YDQM EP++VISMGSC+N GG Y YSVV+G D+I+PVD+YVP
Sbjct: 85 TAGTCFVKMAPLMKHIYDQMLEPKWVISMGSCSNSGGMY-DIYSVVQGVDKILPVDVYVP 143
Query: 158 GCPPTAEALIYGILLLQKKIR 178
GCPP +AL+ G+++LQ+ ++
Sbjct: 144 GCPPRPDALLEGLIMLQEHVQ 164
>gi|168705443|ref|ZP_02737720.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Gemmata
obscuriglobus UQM 2246]
Length = 203
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 114/158 (72%), Gaps = 2/158 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGF-AP 86
+ GF+ T+++ + WAR SL MTFGLACCA+EMM PRYD++RFG A
Sbjct: 2 GLLEGAMRDGFVATNLEHAINWARESSLWPMTFGLACCAIEMMATGAPRYDIDRFGAGAF 61
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY-SVVRG 145
RA+PRQ+D+MIVAGT+ KMA +RR+Y+QMP+P++VI+MG+C GGG Y+ +V +G
Sbjct: 62 RATPRQADLMIVAGTVNLKMAERVRRLYNQMPDPKFVIAMGACTCGGGPYYKYGYNVAKG 121
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
D IVPVD+YVPGCPP EAL+ G++ +Q KIR++ +
Sbjct: 122 VDLIVPVDVYVPGCPPRPEALLEGLMRVQDKIRKMREL 159
>gi|91200364|emb|CAJ73410.1| strongly similar to NADH dehydrogenase I chain B [Candidatus
Kuenenia stuttgartiensis]
Length = 212
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 70/153 (45%), Positives = 101/153 (66%), Gaps = 2/153 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E K ++ ++ L+ W R SL FGL+CC VEM + +YD+ RFG R +
Sbjct: 22 EEAVQKTVVLCNLQNLIAWGRKNSLWPFNFGLSCCYVEMATSLTSKYDIARFGAEVIRGT 81
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PR++DVMI AGT+ KMA ++R+Y+QM EPR++ISMGSC+N GG Y YSVV+G D+
Sbjct: 82 PREADVMITAGTIFIKMAPIIKRLYEQMMEPRWIISMGSCSNSGGMY-DIYSVVQGVDKF 140
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
+PVD+YVPGCPP +A + G+L+L+ + +
Sbjct: 141 MPVDVYVPGCPPRPDAFMEGLLMLRDSVGKEKR 173
>gi|71754617|ref|XP_828223.1| NADH-ubiquinone oxidoreductase 20 kDa subunit mitochondrial
precursor [Trypanosoma brucei TREU927]
gi|6647671|sp|Q26783|NDUS7_TRYBB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
7, mitochondrial; AltName: Full=Complex I-20kD;
Short=CI-20kD; AltName: Full=NADH-ubiquinone
oxidoreductase 20 kDa subunit; Flags: Precursor
gi|162168|gb|AAA30217.1| NADH dehydrogenase (ubiquinone) [Trypanosoma brucei]
gi|70833609|gb|EAN79111.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor [Trypanosoma brucei]
gi|261334029|emb|CBH17023.1| NADH-ubiquinone oxidoreductase 20 kDa subunit (mitochondrial
precursor), putative [Trypanosoma brucei gambiense
DAL972]
Length = 202
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 82/137 (59%), Positives = 108/137 (78%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
++ L W S +TFGLACCAVEMM A RYDL+RFG PR +PRQ++++IV+GT
Sbjct: 55 TLHDLTEWCLAYSPWPLTFGLACCAVEMMHAYASRYDLDRFGIVPRPTPRQAEIIIVSGT 114
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 115 VTNKMAPILRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174
Query: 162 TAEALIYGILLLQKKIR 178
+AE+L++ + LQKKIR
Sbjct: 175 SAESLVFCLHTLQKKIR 191
>gi|89073316|ref|ZP_01159846.1| NADH dehydrogenase beta subunit [Photobacterium sp. SKA34]
gi|89051026|gb|EAR56490.1| NADH dehydrogenase beta subunit [Photobacterium sp. SKA34]
Length = 183
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 104/141 (73%), Gaps = 2/141 (1%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMI 97
+V VD L++++R SL FG +CC VEMM A+ PRYD+ RFG R SPRQSDV+I
Sbjct: 25 IVGKVDDLISYSRKHSLWPYNFGTSCCFVEMMTAATPRYDMARFGSEVLRGSPRQSDVLI 84
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
AGT KMA ++ +YDQM EP++VISMGSC+N GG Y YSVV+G D+I+PVD+YVP
Sbjct: 85 TAGTCFVKMAPLMKHIYDQMLEPKWVISMGSCSNSGGMY-DIYSVVQGVDKILPVDVYVP 143
Query: 158 GCPPTAEALIYGILLLQKKIR 178
GCPP +AL+ G+++LQ+ ++
Sbjct: 144 GCPPRPDALLEGLIMLQEHVQ 164
>gi|255535796|ref|YP_003096167.1| NADH dehydrogenase subunit B [Flavobacteriaceae bacterium 3519-10]
gi|255341992|gb|ACU08105.1| NADH-ubiquinone oxidoreductase chain B [Flavobacteriaceae bacterium
3519-10]
Length = 185
Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats.
Identities = 65/167 (38%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
+ V + +GF T + ++ AR SL + F +CC +E M P YD
Sbjct: 5 KPVIRMDAEPPEGFEGEGFFATKLSSVIGMARKYSLWPLPFATSCCGIEFMAVLNPTYDA 64
Query: 80 ERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
RFG SPRQ+D+++V GT++ K+ L++VY QM EPR+V+++G+CA+ GG +
Sbjct: 65 SRFGMERNSFSPRQADMLMVCGTISKKLGPVLKQVYTQMAEPRWVVAVGACASSGGIF-D 123
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ-----KKIRRV 180
+YSV++G D+I+PVD+YVPGCPP E +I G++ +Q + IRR
Sbjct: 124 TYSVLQGIDKIIPVDVYVPGCPPRPEQIIEGVMQVQALCEGESIRRR 170
>gi|317123846|ref|YP_004097958.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043]
gi|315587934|gb|ADU47231.1| NADH dehydrogenase subunit B [Intrasporangium calvum DSM 43043]
Length = 184
Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats.
Identities = 74/151 (49%), Positives = 107/151 (70%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-AS 89
E GFL+++V+ L + R S+ +TFGLACCA+EMM P YD+ RFG A+
Sbjct: 4 EEKLPAGFLLSTVEGLAGYMRKASMWPVTFGLACCAIEMMAVGTPDYDIARFGMERFSAT 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG ++ KMA +R+VYDQMP P++VISMG CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRQADLMIVAGRVSQKMAPVVRQVYDQMPNPKWVISMGVCASSGGMFN-NYAIVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+PVDIY+PGCPP + L+ I+ L K+++
Sbjct: 123 IPVDIYLPGCPPRPQMLLNAIIELHKQVQST 153
>gi|269986278|gb|EEZ92586.1| NADH-quinone oxidoreductase, B subunit [Candidatus Parvarchaeum
acidiphilum ARMAN-4]
Length = 172
Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats.
Identities = 63/141 (44%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA-SPRQSDVMIVAGT 101
++ ++ W R+ SL +TFG +CCA+EMM + D +R G SPRQSD+++V+GT
Sbjct: 24 INTVLNWGRSNSLWPLTFGTSCCAIEMMTFGATKVDADRLGVLFNGDSPRQSDLILVSGT 83
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+T KMA L VY+Q+P+P+YVI++G+C GG YH SY+ + G DRI+PVD ++PGCPP
Sbjct: 84 ITKKMARRLLNVYEQIPDPKYVIAVGACNVSGGLYHDSYNTIEGIDRIMPVDAFIPGCPP 143
Query: 162 TAEALIYGILLLQKKIRRVGN 182
E + + +LQK I+ +
Sbjct: 144 RPEEFLDAVRVLQKLIKENRS 164
>gi|73544267|ref|XP_848028.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor [Leishmania major strain Friedlin]
gi|146094718|ref|XP_001467361.1| NADH-ubiquinone oxidoreductase [Leishmania infantum JPCM5]
gi|321398434|emb|CBZ08822.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
precursor [Leishmania infantum JPCM5]
gi|321438382|emb|CBZ12134.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
precursor [Leishmania major strain Friedlin]
gi|322492890|emb|CBZ28169.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
precursor [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322500143|emb|CBZ35218.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 201
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 82/137 (59%), Positives = 108/137 (78%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
++ L W S +TFGLACCAVEMM + RYDL+RFG PR SPRQ++++IV+GT
Sbjct: 55 TLHDLTEWVVAYSPWPLTFGLACCAVEMMHSYSSRYDLDRFGIVPRPSPRQAEIIIVSGT 114
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPP 174
Query: 162 TAEALIYGILLLQKKIR 178
+AE+L++ + LQKKIR
Sbjct: 175 SAESLVFCLHNLQKKIR 191
>gi|167045512|gb|ABZ10165.1| putative NADH ubiquinone oxidoreductase, 20 Kd subunit [uncultured
marine microorganism HF4000_APKG10H11]
Length = 182
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 64/142 (45%), Positives = 93/142 (65%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
V +L+TW R SL + CC+ E + YD+ERFG A+ RQ D++I+ G +
Sbjct: 34 VKKLITWGRKNSLWVVHLTTGCCSPEFAALAGAGYDMERFGPLVMAAMRQCDILIIEGQV 93
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
+KMA ++R YDQMP+P+YVI++G+CA GG+Y SYS+V G D+I+PVD+YVPGCPP
Sbjct: 94 ADKMAEVVKRTYDQMPDPKYVIAVGNCAISGGFYWDSYSMVMGIDKIIPVDVYVPGCPPR 153
Query: 163 AEALIYGILLLQKKIRRVGNVK 184
E I I L+Q ++ + G +
Sbjct: 154 PEDWIDAIRLVQTRMDKEGLDR 175
>gi|262197697|ref|YP_003268906.1| NADH-quinone oxidoreductase subunit beta [Haliangium ochraceum DSM
14365]
gi|262081044|gb|ACY17013.1| NADH-quinone oxidoreductase, B subunit [Haliangium ochraceum DSM
14365]
Length = 167
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
+ T V+ W R SL F ACC +E M + P+YD+ RFG R SPRQSD+
Sbjct: 4 ELVTTRVEDAANWGRKFSLFTYPFVTACCGMEFMSVAAPKYDIARFGAEFPRFSPRQSDL 63
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
++V GT+T + L+RVY+QM EP +V++ G CA+ GG ++ +YS + G D+++PVDIY
Sbjct: 64 LMVVGTITERQGPVLKRVYEQMAEPNWVVAFGVCASTGG-FYQNYSAMPGADQVIPVDIY 122
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181
+PGCPP E ++ +++LQ++++
Sbjct: 123 IPGCPPRPEQVLDALIMLQQRVQEGR 148
>gi|317050795|ref|YP_004111911.1| NADH-quinone oxidoreductase subunit B [Desulfurispirillum indicum
S5]
gi|316945879|gb|ADU65355.1| NADH-quinone oxidoreductase, B subunit [Desulfurispirillum indicum
S5]
Length = 208
Score = 189 bits (480), Expect = 2e-46, Method: Composition-based stats.
Identities = 64/150 (42%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 36 KGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSD 94
+G ++T+++++ W R+ SL +++ ACC +EM+ +S P++D+ RFG RASPRQ+D
Sbjct: 25 QGVIITTLEKVYNWGRSNSLWPLSYATACCGIEMISSSCPQHDIARFGSEVFRASPRQAD 84
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MI+AGT+T KM + +++Q+ EP+Y I+MG+C GG + YS SVV +P+D+
Sbjct: 85 LMILAGTITKKMMPQVVTLWEQIAEPKYAIAMGNCVITGGIFKYSPSVVANVPDYIPIDV 144
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
++PGC P EAL GI+ LQ +IRR +K
Sbjct: 145 FIPGCAPRPEALFNGIITLQHQIRRQKMLK 174
>gi|116754357|ref|YP_843475.1| NADH-quinone oxidoreductase, B subunit [Methanosaeta thermophila
PT]
gi|116665808|gb|ABK14835.1| F420H2 dehydrogenase subunit B [Methanosaeta thermophila PT]
Length = 190
Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 57/142 (40%), Positives = 92/142 (64%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ + ++ W R SL ++ + CC VEM+ P YD +RFG PRA+PRQ+DVMI++
Sbjct: 44 MGPIKNVLNWGRKNSLWFLMQPMGCCGVEMLVFGCPHYDCDRFGIIPRATPRQADVMIIS 103
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
G +T K A++ +++QM EP++ I++G CA GG ++ SY++++ P+D+YVPGC
Sbjct: 104 GYITRKYLPAIKNLWEQMLEPKWCIAVGECAISGGPFYDSYNIIQNTSDFFPIDVYVPGC 163
Query: 160 PPTAEALIYGILLLQKKIRRVG 181
PP E I G + LQ+KI++
Sbjct: 164 PPRPEQFIKGFVELQEKIKQRK 185
>gi|154339768|ref|XP_001565841.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
precursor [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134063159|emb|CAM45359.1| NADH-ubiquinone oxidoreductase 20 kDa subunit,mitochondrial
precursor [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 201
Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 82/137 (59%), Positives = 108/137 (78%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
++ L W S +TFGLACCAVEMM + RYDL+RFG PR SPRQ++++IV+GT
Sbjct: 55 TLHDLTEWVLAYSPWPLTFGLACCAVEMMHSYSSRYDLDRFGIVPRPSPRQAEIIIVSGT 114
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+TNKMA LR +Y QM P++VISMGSCANGGGYYH+SY+V+RGC+R +PVD ++PGCPP
Sbjct: 115 VTNKMAPLLRNIYVQMVNPKWVISMGSCANGGGYYHFSYAVLRGCERSIPVDFWIPGCPP 174
Query: 162 TAEALIYGILLLQKKIR 178
+AE+L++ + LQKKIR
Sbjct: 175 SAESLVFCLHNLQKKIR 191
>gi|21750696|dbj|BAC03820.1| unnamed protein product [Homo sapiens]
Length = 213
Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 100/151 (66%), Positives = 114/151 (75%), Gaps = 4/151 (2%)
Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
+ + + + + ++V +D LV WAR SL MTFGLACCAVEMM + P
Sbjct: 47 ASTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAP 106
Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
RYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGY
Sbjct: 107 RYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGY 166
Query: 136 YHYSYSVVRGCDRIVPVDIYVPG----CPPT 162
YHYSYSVVRGCDRIVPVDIY+PG PPT
Sbjct: 167 YHYSYSVVRGCDRIVPVDIYIPGRAGTAPPT 197
>gi|308275204|emb|CBX31801.1| NADH-quinone oxidoreductase subunit B 2 [uncultured
Desulfobacterium sp.]
Length = 183
Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 77/141 (54%), Positives = 102/141 (72%), Gaps = 2/141 (1%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
V L+ AR SL +TFG+ACCA+EMM A M R+DL+RFG RASPRQSDVM+VAG
Sbjct: 25 APVQNLLNLARVNSLWPITFGIACCAIEMMAAGMARFDLDRFGTIFRASPRQSDVMVVAG 84
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPG 158
T++ K+ +R +YDQMP P++V++MG+CA GG + Y Y++V G D+I+PVDIY+PG
Sbjct: 85 TISKKLVPTIRTLYDQMPGPKWVMAMGNCAISGGPFAYDGQYAIVNGTDKIIPVDIYIPG 144
Query: 159 CPPTAEALIYGILLLQKKIRR 179
CPP EA I G+L LQ I +
Sbjct: 145 CPPRPEAFIQGLLKLQTLISK 165
>gi|227494504|ref|ZP_03924820.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
gi|226832238|gb|EEH64621.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
Length = 184
Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 76/151 (50%), Positives = 111/151 (73%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G +TS++ ++ AR S +T GLACC++EMM A PR+D+ RFG RAS
Sbjct: 4 EESLPSGVALTSIEAVLDLARKHSQWPVTMGLACCSIEMMSAGTPRFDMARFGLEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PR +D+MI+AG +++KMA +RRVYD MPEP++VI+MG+CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRHADLMIIAGRMSHKMAPIVRRVYDSMPEPKWVIAMGACASSGGMFN-NYALVQGADHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VPVD+Y+PGCPP EALI IL+L+++I +
Sbjct: 123 VPVDVYLPGCPPRPEALINSILVLREQISKE 153
>gi|167945481|ref|ZP_02532555.1| NADH dehydrogenase subunit B [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 140
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 102/140 (72%), Positives = 112/140 (80%), Gaps = 5/140 (3%)
Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
+ WARTGSL MTFGLACCAVEMM A+ RYD++RFG R SPRQSDVMIVAGTL NKM
Sbjct: 1 INWARTGSLWPMTFGLACCAVEMMHAAAARYDMDRFGIVFRPSPRQSDVMIVAGTLVNKM 60
Query: 107 ASALRRVYDQM---PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
A R PEPR+VISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPGCPPTA
Sbjct: 61 --AAWRCARSTTRWPEPRWVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPGCPPTA 118
Query: 164 EALIYGILLLQKKIRRVGNV 183
EAL+YGI+ LQ KIRR +
Sbjct: 119 EALLYGIIQLQDKIRRTCTI 138
>gi|326474729|gb|EGD98738.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton tonsurans
CBS 112818]
Length = 204
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 99/184 (53%), Positives = 115/184 (62%), Gaps = 18/184 (9%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFL---VTSVDQLVTWARTGSLMWMTF 60
T + + S S K + S+ +G L +T++DQ+ WAR GSL MTF
Sbjct: 31 TEQSSALQSTAGSVPARK-PRREVPLPSQEKPQGVLDYALTTLDQVANWARQGSLWPMTF 89
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACCAVEMM S PRYD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 90 GLACCAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMP-- 147
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
G YSV RGCDRIVPVDIYVPGCPPT+EAL+YGI LQ+K+R
Sbjct: 148 ------------GPTLGDYYSVTRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKMRNT 195
Query: 181 GNVK 184
+
Sbjct: 196 KITR 199
>gi|229064950|ref|ZP_04200248.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH603]
gi|229136115|ref|ZP_04264868.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-ST196]
gi|229170007|ref|ZP_04297699.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH621]
gi|228613432|gb|EEK70565.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH621]
gi|228647274|gb|EEL03356.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-ST196]
gi|228716251|gb|EEL67963.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH603]
Length = 133
Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats.
Identities = 81/126 (64%), Positives = 97/126 (76%)
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+T KMA +RR+YDQM
Sbjct: 1 MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
PEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP ALIYGI L++KI
Sbjct: 61 PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120
Query: 178 RRVGNV 183
R
Sbjct: 121 RYEART 126
>gi|171186232|ref|YP_001795151.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus
V24Sta]
gi|170935444|gb|ACB40705.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus
V24Sta]
Length = 182
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 62/138 (44%), Positives = 91/138 (65%), Gaps = 1/138 (0%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+++L W SL + +CC VE+ S P +D ER+G P + RQS+V++V G
Sbjct: 13 AKLEKLFKWGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVILVEG 72
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
T+T KMA L+ VY+QMPEP+YV++MG+CA GG + SY VV+ D ++PVD+Y+ GCP
Sbjct: 73 TITRKMARVLKMVYEQMPEPKYVLAMGACAVRGGLFWNSYHVVQ-VDTVLPVDVYIAGCP 131
Query: 161 PTAEALIYGILLLQKKIR 178
PT EA+I ++L KI+
Sbjct: 132 PTPEAVIRAFMMLHNKIK 149
>gi|228930306|ref|ZP_04093311.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
gi|228982015|ref|ZP_04142308.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis Bt407]
gi|229020517|ref|ZP_04177264.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH1273]
gi|229026735|ref|ZP_04183071.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH1272]
gi|229033931|ref|ZP_04188885.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH1271]
gi|229158859|ref|ZP_04286917.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus ATCC 4342]
gi|229164245|ref|ZP_04292178.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus R309803]
gi|229187525|ref|ZP_04314665.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BGSC 6E1]
gi|229193551|ref|ZP_04320495.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus ATCC 10876]
gi|228589856|gb|EEK47731.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus ATCC 10876]
gi|228595892|gb|EEK53572.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BGSC 6E1]
gi|228619185|gb|EEK76078.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus R309803]
gi|228624843|gb|EEK81612.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus ATCC 4342]
gi|228728357|gb|EEL79379.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH1271]
gi|228734566|gb|EEL85224.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH1272]
gi|228740788|gb|EEL91039.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus AH1273]
gi|228777679|gb|EEM25953.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis Bt407]
gi|228829349|gb|EEM74981.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar pondicheriensis BGSC
4BA1]
Length = 133
Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 81/126 (64%), Positives = 97/126 (76%)
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+T KMA +RR+YDQM
Sbjct: 1 MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
PEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP ALIYGI L++KI
Sbjct: 61 PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120
Query: 178 RRVGNV 183
R
Sbjct: 121 RYEAKT 126
>gi|18313693|ref|NP_560360.1| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum aerophilum str.
IM2]
gi|18161245|gb|AAL64542.1| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum aerophilum str.
IM2]
Length = 190
Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 62/138 (44%), Positives = 92/138 (66%), Gaps = 1/138 (0%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
++++ W SL + +CC VE+ S P +D ER+G P + RQ++V+IV G
Sbjct: 13 AKLERVFKWGVRWSLWPVHLVTSCCGVEVAHTSAPGFDAERWGVLPFNTMRQTNVIIVEG 72
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
T+T KMA L++VY+QMPEP++V++MG+CA GG + SY VV+ D IVPVD+Y+ GCP
Sbjct: 73 TITRKMAKVLKQVYEQMPEPKFVLAMGACAVRGGLFWNSYHVVQ-VDTIVPVDVYIAGCP 131
Query: 161 PTAEALIYGILLLQKKIR 178
PT EA+I ++L KI+
Sbjct: 132 PTPEAVIRAFIMLHNKIK 149
>gi|323698263|ref|ZP_08110175.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. ND132]
gi|323458195|gb|EGB14060.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio desulfuricans
ND132]
Length = 181
Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats.
Identities = 72/141 (51%), Positives = 96/141 (68%), Gaps = 3/141 (2%)
Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTL 102
++ R SL MTFGLACCA+EMM M R+D+ RFG R SPRQSDVMIVAGT+
Sbjct: 31 QDIMNVCRAMSLWPMTFGLACCAIEMMATGMARFDMARFGAEVFRPSPRQSDVMIVAGTV 90
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDIYVPGCP 160
KMA ++ R+Y+QMP P++VI+MG+CA GG + +Y+V++G D ++PVD+YVPGCP
Sbjct: 91 NKKMAPSVVRLYEQMPGPKWVIAMGNCAISGGPFKIKDNYNVIQGVDTLIPVDVYVPGCP 150
Query: 161 PTAEALIYGILLLQKKIRRVG 181
P E L+ G LQ+ I
Sbjct: 151 PRPEGLLEGFFELQRLITGKR 171
>gi|229007607|ref|ZP_04165201.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus mycoides Rock1-4]
gi|229087789|ref|ZP_04219909.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock3-44]
gi|228695517|gb|EEL48382.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus Rock3-44]
gi|228753618|gb|EEM03062.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus mycoides Rock1-4]
Length = 133
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 81/126 (64%), Positives = 97/126 (76%)
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
MTFGLACCA+EMM YDL+RFG R SPRQSDVMIV+GT+T KMA +RR+YDQM
Sbjct: 1 MTFGLACCAIEMMGVGSSHYDLDRFGSFFRTSPRQSDVMIVSGTVTKKMAPIVRRLYDQM 60
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
PEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y+PGCPP ALIYGI L++KI
Sbjct: 61 PEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVYIPGCPPNPAALIYGINKLKEKI 120
Query: 178 RRVGNV 183
R
Sbjct: 121 RYEAKT 126
>gi|147744666|gb|ABQ51200.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Capra hircus]
Length = 183
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 98/158 (62%), Positives = 115/158 (72%), Gaps = 4/158 (2%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEI----THKGFLVTSVDQLVTWARTGSLMWM 58
+ V+ + + S + V + + + ++V +D L+ WAR SL M
Sbjct: 26 VRGVHSSMAADSPSSTQPAVSQARAVVPKPAALPSSRGEYVVAKLDDLINWARRSSLWPM 85
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
TFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP
Sbjct: 86 TFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMP 145
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
EPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV
Sbjct: 146 EPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 183
>gi|301059635|ref|ZP_07200544.1| NADH dehydrogenase subunit B [delta proteobacterium NaphS2]
gi|300446281|gb|EFK10137.1| NADH dehydrogenase subunit B [delta proteobacterium NaphS2]
Length = 176
Score = 187 bits (476), Expect = 5e-46, Method: Composition-based stats.
Identities = 77/137 (56%), Positives = 100/137 (72%), Gaps = 3/137 (2%)
Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTL 102
++L R SL MTFGLACCA+EMM M R+DL RFG R SPRQSD+MIVAGT+
Sbjct: 25 EKLQNVCRAMSLWPMTFGLACCAIEMMSVGMARFDLARFGAEVFRPSPRQSDLMIVAGTV 84
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYVPGCP 160
T+K+A A+ R+Y+QMP P++VI+MG+CA GG + Y+V+ G D+I+PVD+YVPGCP
Sbjct: 85 THKLAPAIERLYEQMPAPKWVIAMGNCAISGGPFKFPGQYAVLEGVDKIIPVDVYVPGCP 144
Query: 161 PTAEALIYGILLLQKKI 177
EAL+ G+ LQKKI
Sbjct: 145 ARPEALLEGLFELQKKI 161
>gi|330834139|ref|YP_004408867.1| NADH-quinone oxidoreductase, B subunit [Metallosphaera cuprina
Ar-4]
gi|329566278|gb|AEB94383.1| NADH-quinone oxidoreductase, B subunit [Metallosphaera cuprina
Ar-4]
Length = 170
Score = 187 bits (474), Expect = 7e-46, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 90/144 (62%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+ L W + SL F +CC E + R+D ERFG P AS RQS+++ + G
Sbjct: 26 KPIRTLRDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERFGMLPFASSRQSNILTIEG 85
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TLT KMA A R VYDQMPEP+YVI+MG+C GG + SY+ V D +PVD+Y+PGCP
Sbjct: 86 TLTRKMARAARIVYDQMPEPKYVIAMGACILEGGIFWNSYNTVLPSDVGIPVDLYIPGCP 145
Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
EA+ G+L+LQKKIR G ++
Sbjct: 146 IRPEAIARGLLMLQKKIRSQGAIR 169
>gi|124027080|ref|YP_001012400.1| NAD(P)H-quinone oxidoreductase chain K [Hyperthermus butylicus DSM
5456]
gi|123977774|gb|ABM80055.1| NAD(P)H-quinone oxidoreductase chain K [Hyperthermus butylicus DSM
5456]
Length = 209
Score = 187 bits (474), Expect = 7e-46, Method: Composition-based stats.
Identities = 62/139 (44%), Positives = 91/139 (65%), Gaps = 1/139 (0%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+ L+ W + SL + +CC E P+YD ER G P PR ++V++V G
Sbjct: 31 KPIKSLLDWGISFSLWPVHLTTSCCGAEFAAVYDPKYDSERLGSLPFTHPRNTNVLLVEG 90
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TLT KMA A R V++QMP P++VI+MG+CA GG ++ SY++VR ++I+PVD YVPGCP
Sbjct: 91 TLTRKMARAARLVWEQMPWPKFVIAMGACAITGGIFYNSYNIVR-VNQILPVDYYVPGCP 149
Query: 161 PTAEALIYGILLLQKKIRR 179
PT EA+ ++ LQ+K+R+
Sbjct: 150 PTPEAVANALIKLQEKVRK 168
>gi|83951739|ref|ZP_00960471.1| NADH dehydrogenase beta subunit [Roseovarius nubinhibens ISM]
gi|83836745|gb|EAP76042.1| NADH dehydrogenase beta subunit [Roseovarius nubinhibens ISM]
Length = 127
Score = 187 bits (474), Expect = 8e-46, Method: Composition-based stats.
Identities = 111/126 (88%), Positives = 116/126 (92%), Gaps = 1/126 (0%)
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
MTF CCAVEMM +MPRYD ERFGFAPRASPRQSDVMIVAGTLTNKMA ALR+VYDQM
Sbjct: 1 MTFVC-CCAVEMMHVAMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQM 59
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YGIL LQ+KI
Sbjct: 60 PEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKI 119
Query: 178 RRVGNV 183
RR G +
Sbjct: 120 RRTGTI 125
>gi|115378556|ref|ZP_01465711.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca
DW4/3-1]
gi|310820744|ref|YP_003953102.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca
DW4/3-1]
gi|115364428|gb|EAU63508.1| NADH-quinone oxidoreductase chain b [Stigmatella aurantiaca
DW4/3-1]
gi|309393816|gb|ADO71275.1| NADH-quinone oxidoreductase chain B [Stigmatella aurantiaca
DW4/3-1]
Length = 187
Score = 187 bits (474), Expect = 9e-46, Method: Composition-based stats.
Identities = 67/142 (47%), Positives = 97/142 (68%), Gaps = 2/142 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
FL V + + WAR SL + ACC +E M + R+DL RFG R SPRQ+D+
Sbjct: 19 SFLQRVVSKGLGWARKYSLFTYPYATACCGMEYMSVAGGRHDLARFGAEYPRFSPRQADM 78
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
++V GT+ K A L+RVY+QM EP++V++ G CA+ GG ++ +Y+V++G DRI+PVD+Y
Sbjct: 79 LLVTGTINLKQAPILKRVYEQMCEPKWVVAFGVCASSGG-FYDNYAVLQGIDRIIPVDVY 137
Query: 156 VPGCPPTAEALIYGILLLQKKI 177
+PGCPP E ++ ILLLQ+KI
Sbjct: 138 IPGCPPRPEQVLDAILLLQEKI 159
>gi|99034974|ref|ZP_01314777.1| hypothetical protein Wendoof_01000400 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 161
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 99/131 (75%), Positives = 110/131 (83%), Gaps = 4/131 (3%)
Query: 34 THKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRAS 89
+GFLVT L + WAR+GSL MTFGLACCAVEMM + RYDL+R+G RAS
Sbjct: 15 KKEGFLVTKFGDLTDYVMNWARSGSLWPMTFGLACCAVEMMHTASSRYDLDRYGIMFRAS 74
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQSDVMIVAGTLTNKMA+ALR+VYDQM +P+YVISMGSCANGGGYYHYSYSVVRGCDRI
Sbjct: 75 PRQSDVMIVAGTLTNKMAAALRKVYDQMADPKYVISMGSCANGGGYYHYSYSVVRGCDRI 134
Query: 150 VPVDIYVPGCP 160
VPVD+YVPGCP
Sbjct: 135 VPVDVYVPGCP 145
>gi|146304760|ref|YP_001192076.1| NADH-quinone oxidoreductase subunit B [Metallosphaera sedula DSM
5348]
gi|145703010|gb|ABP96152.1| NADH dehydrogenase subunit B [Metallosphaera sedula DSM 5348]
Length = 170
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 89/144 (61%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
V L W SL F +CC E + R+D ERFG P AS RQS+++ + G
Sbjct: 26 KPVKTLRDWGIAFSLWPPHFTTSCCGTEFGAFAAARFDAERFGMLPFASSRQSNILTIEG 85
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TLT KMA A R VYDQMPEP+YVI++G+C GG + SY+ V D +PVD+Y+PGCP
Sbjct: 86 TLTRKMARAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTVLPSDVGIPVDLYLPGCP 145
Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
EA+ G+L+LQKKIR G ++
Sbjct: 146 TRPEAIARGLLMLQKKIRTQGAIR 169
>gi|313836201|gb|EFS73915.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA2]
gi|314971365|gb|EFT15463.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA3]
Length = 188
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDV 95
G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+
Sbjct: 14 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 74 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132
Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
+PGCPP+ + LI + ++++I+
Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156
>gi|328906302|gb|EGG26077.1| NADH dehydrogenase subunit B [Propionibacterium sp. P08]
Length = 185
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDV 95
G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+
Sbjct: 11 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 70
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 71 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 129
Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
+PGCPP+ + LI + ++++I+
Sbjct: 130 LPGCPPSPDMLIDAVFKIREQIQH 153
>gi|313763285|gb|EFS34649.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL013PA1]
gi|313773331|gb|EFS39297.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL074PA1]
gi|313793607|gb|EFS41647.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA1]
gi|313802882|gb|EFS44095.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA2]
gi|313806328|gb|EFS44844.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA2]
gi|313810766|gb|EFS48480.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL083PA1]
gi|313813675|gb|EFS51389.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL025PA1]
gi|313814975|gb|EFS52689.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL059PA1]
gi|313819439|gb|EFS57153.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL046PA2]
gi|313821245|gb|EFS58959.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA1]
gi|313822300|gb|EFS60014.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA2]
gi|313826142|gb|EFS63856.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL063PA1]
gi|313829369|gb|EFS67083.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL063PA2]
gi|313831077|gb|EFS68791.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL007PA1]
gi|313833207|gb|EFS70921.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL056PA1]
gi|313838150|gb|EFS75864.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL086PA1]
gi|314916739|gb|EFS80570.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA4]
gi|314919135|gb|EFS82966.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA1]
gi|314921215|gb|EFS85046.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA3]
gi|314925991|gb|EFS89822.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL036PA3]
gi|314930357|gb|EFS94188.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL067PA1]
gi|314956140|gb|EFT00536.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL027PA1]
gi|314959673|gb|EFT03775.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA1]
gi|314962247|gb|EFT06348.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA2]
gi|314963239|gb|EFT07339.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL082PA1]
gi|314969782|gb|EFT13880.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL037PA1]
gi|314973939|gb|EFT18035.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL053PA1]
gi|314976867|gb|EFT20962.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL045PA1]
gi|314979332|gb|EFT23426.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL072PA2]
gi|314984989|gb|EFT29081.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA1]
gi|314986337|gb|EFT30429.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA2]
gi|314988567|gb|EFT32658.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL005PA3]
gi|315079684|gb|EFT51672.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL053PA2]
gi|315081012|gb|EFT52988.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL078PA1]
gi|315083925|gb|EFT55901.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL027PA2]
gi|315085062|gb|EFT57038.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL002PA3]
gi|315089491|gb|EFT61467.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL072PA1]
gi|315097690|gb|EFT69666.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL038PA1]
gi|315098103|gb|EFT70079.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL059PA2]
gi|315102679|gb|EFT74655.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL046PA1]
gi|315107941|gb|EFT79917.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL030PA1]
gi|315108821|gb|EFT80797.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL030PA2]
gi|327325710|gb|EGE67507.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL096PA3]
gi|327330842|gb|EGE72587.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL096PA2]
gi|327442865|gb|EGE89519.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL043PA2]
gi|327445257|gb|EGE91911.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL043PA1]
gi|327447757|gb|EGE94411.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL013PA2]
gi|327451632|gb|EGE98286.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA3]
gi|327452285|gb|EGE98939.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL083PA2]
gi|327452502|gb|EGE99156.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL092PA1]
gi|328752118|gb|EGF65734.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL025PA2]
gi|328755062|gb|EGF68678.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL020PA1]
gi|328757010|gb|EGF70626.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL087PA1]
gi|328761546|gb|EGF75064.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL099PA1]
Length = 188
Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats.
Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDV 95
G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+
Sbjct: 14 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 74 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132
Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
+PGCPP+ + LI + ++++I+
Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156
>gi|314923993|gb|EFS87824.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL001PA1]
gi|314965057|gb|EFT09156.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL082PA2]
gi|314983077|gb|EFT27169.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA3]
gi|315090610|gb|EFT62586.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL110PA4]
gi|315093903|gb|EFT65879.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL060PA1]
gi|315104122|gb|EFT76098.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL050PA2]
gi|327325785|gb|EGE67577.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL103PA1]
Length = 188
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDV 95
G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+
Sbjct: 14 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 74 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132
Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
+PGCPP+ + LI + ++++I+
Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156
>gi|314927636|gb|EFS91467.1| NADH dehydrogenase subunit B [Propionibacterium acnes HL044PA1]
Length = 188
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDV 95
G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+
Sbjct: 14 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 74 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132
Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
+PGCPP+ + LI + ++++I+
Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156
>gi|50843385|ref|YP_056612.1| NADH dehydrogenase subunit B [Propionibacterium acnes KPA171202]
gi|289425667|ref|ZP_06427439.1| NADH dehydrogenase subunit B [Propionibacterium acnes SK187]
gi|289426988|ref|ZP_06428707.1| NADH dehydrogenase subunit B [Propionibacterium acnes J165]
gi|295131459|ref|YP_003582122.1| NADH-ubiquinone oxidoreductase chain B [Propionibacterium acnes
SK137]
gi|81611154|sp|Q6A6F9|NUOB_PROAC RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|50840987|gb|AAT83654.1| NADH dehydrogenase I chain B [Propionibacterium acnes KPA171202]
gi|289153968|gb|EFD02661.1| NADH dehydrogenase subunit B [Propionibacterium acnes SK187]
gi|289159810|gb|EFD07995.1| NADH dehydrogenase subunit B [Propionibacterium acnes J165]
gi|291376052|gb|ADD99906.1| NADH-ubiquinone oxidoreductase chain B [Propionibacterium acnes
SK137]
gi|332676328|gb|AEE73144.1| NADH-quinone oxidoreductase subunit B [Propionibacterium acnes 266]
Length = 185
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDV 95
G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+
Sbjct: 11 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 70
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 71 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 129
Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
+PGCPP+ + LI + ++++I+
Sbjct: 130 LPGCPPSPDMLIDAVFKIREQIQH 153
>gi|282855273|ref|ZP_06264605.1| NADH dehydrogenase subunit B [Propionibacterium acnes J139]
gi|282581861|gb|EFB87246.1| NADH dehydrogenase subunit B [Propionibacterium acnes J139]
Length = 185
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDV 95
G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+
Sbjct: 11 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 70
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 71 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 129
Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
+PGCPP+ + LI + ++++I+
Sbjct: 130 LPGCPPSPDMLIDAVFKIREQIQH 153
>gi|153948912|ref|YP_001400434.1| NADH dehydrogenase subunit B [Yersinia pseudotuberculosis IP 31758]
gi|238065223|sp|A7FGQ6|NUOB_YERP3 RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|152960407|gb|ABS47868.1| NADH-quinone oxidoreductase, B subunit [Yersinia pseudotuberculosis
IP 31758]
Length = 227
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/149 (48%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDV 95
G L ++ +V W R SL FGL+CC VEM+ + +D+ RFG RASPRQ+D
Sbjct: 41 GKLENAMHDMVNWGRKNSLWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADF 100
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G D+ +PVD+Y
Sbjct: 101 MVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVY 159
Query: 156 VPGCPPTAEALIYG--ILLLQKKIRRVGN 182
+PGCPP EA + +LLLQ+ I +
Sbjct: 160 IPGCPPRPEAYMQALLLLLLQESIGKERR 188
>gi|327333123|gb|EGE74850.1| NADH dehydrogenase I, B subunit [Propionibacterium acnes HL097PA1]
Length = 188
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 72/144 (50%), Positives = 108/144 (75%), Gaps = 2/144 (1%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDV 95
G ++TS++ +V W R S +T GLACCA+EM+ PR D R+G RASPRQ+D+
Sbjct: 14 GIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADL 73
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIV+G ++ KMA +R++YDQMPEP++VISMG+CA+ GG ++ +Y+VV+GCD IVPVD+Y
Sbjct: 74 MIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACASSGGIFN-NYAVVQGCDHIVPVDVY 132
Query: 156 VPGCPPTAEALIYGILLLQKKIRR 179
+PGCPP+ + LI + ++++I+
Sbjct: 133 LPGCPPSPDMLIDAVFKIREQIQH 156
>gi|226489136|emb|CAX74917.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7 [Schistosoma
japonicum]
Length = 176
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 87/154 (56%), Positives = 111/154 (72%), Gaps = 1/154 (0%)
Query: 5 TVNQKIISGQSSCSLEKVD-ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLA 63
+ +Q + E + +S F++T +D L WAR S+ +TFGLA
Sbjct: 22 STSQPSEPSKVDNPDESIPYKPYSPFPKPQGKLDFVLTRLDDLANWARKNSIYPLTFGLA 81
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCAVEMM + PRYD++R+G RASPRQ+D+MIV+GT+TNKMA ALRR+YDQM P++V
Sbjct: 82 CCAVEMMHIAGPRYDMDRYGVVFRASPRQADLMIVSGTVTNKMAPALRRIYDQMTHPKWV 141
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
ISMGSCANGGGYYHYSYSV+RGCDR++PVDIYVP
Sbjct: 142 ISMGSCANGGGYYHYSYSVLRGCDRVIPVDIYVP 175
>gi|116747649|ref|YP_844336.1| NADH-quinone oxidoreductase subunit B [Syntrophobacter fumaroxidans
MPOB]
gi|116696713|gb|ABK15901.1| NADH-quinone oxidoreductase, B subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 176
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 104/157 (66%), Gaps = 5/157 (3%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
+ +R++ E ++ ++ AR SL MTFGLACCA+EMM A R+DL+RFG
Sbjct: 2 EEQNRVAPE--EPAIQFAVLEDILNLARANSLWPMTFGLACCAIEMMAAGASRFDLDRFG 59
Query: 84 F-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY--SY 140
R SPRQSD+MIVAGT++ KM A++ ++DQMP P++ I+MG+CA GG + Y Y
Sbjct: 60 AGVFRPSPRQSDLMIVAGTISKKMGPAVQMLWDQMPNPKWCIAMGNCAISGGPFEYEGQY 119
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
++V G IVPVDI++PGCPP EALI G L L KI
Sbjct: 120 AIVPGAHLIVPVDIFIPGCPPRPEALIQGFLALGDKI 156
>gi|76811559|ref|YP_334953.1| NADH dehydrogenase subunit B [Burkholderia pseudomallei 1710b]
gi|76581012|gb|ABA50487.1| NADH-quinone oxidoreductase, B subunit [Burkholderia pseudomallei
1710b]
Length = 226
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 104/151 (68%), Positives = 123/151 (81%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ GF+VT++D + A+ SL +MTFGLA CAVEMM A+ RYD++RFG PRASPR
Sbjct: 66 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLARCAVEMMHAAGARYDMDRFGMIPRASPR 125
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVP
Sbjct: 126 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVP 185
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VD+YVPGCPPTAEAL+Y ++ LQ+K+
Sbjct: 186 VDVYVPGCPPTAEALVYDLMQLQRKVAERST 216
>gi|254670954|emb|CBA07618.1| NADH-ubiquinone oxidoreductase, 20 kDa subunit [Neisseria
meningitidis alpha153]
Length = 158
Score = 185 bits (470), Expect = 3e-45, Method: Composition-based stats.
Identities = 93/124 (75%), Positives = 106/124 (85%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ+D
Sbjct: 8 KKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQAD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+VPVD+
Sbjct: 68 LMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDV 127
Query: 155 YVPG 158
YVPG
Sbjct: 128 YVPG 131
>gi|302348182|ref|YP_003815820.1| NADH-quinone oxidoreductase subunit B subunit [Acidilobus
saccharovorans 345-15]
gi|302328594|gb|ADL18789.1| NADH-quinone oxidoreductase subunit B subunit [Acidilobus
saccharovorans 345-15]
Length = 210
Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 102/155 (65%), Gaps = 1/155 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+++++ + + ++ ++V WA SL + +CC E+ A PR+D ER+G P
Sbjct: 24 EVAAQLAKESLIKGTIAKVVDWATAFSLWPVHLMTSCCGCEIGAAWGPRFDNERYGSLPW 83
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
SPRQ++++I+ GT+T KMA +R ++QMP P++VI+MG+C+ GG ++ SY++VR
Sbjct: 84 VSPRQTNLIIIEGTVTKKMACTVRITWEQMPFPKFVIAMGACSLDGGIFYNSYNIVRPW- 142
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
++VPVDIY+PGCPP EA+ I+ LQK IR G
Sbjct: 143 QVVPVDIYIPGCPPRPEAVARSIVELQKIIRSRGV 177
>gi|307696866|gb|ADN85879.1| NADH-ubiquinone oxidoreductase subunit 10 [Nyctotherus ovalis]
Length = 155
Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 73/128 (57%), Positives = 100/128 (78%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
FL T L++WAR G++ +TFGLACCA+EMM + RYD++RFGF R SPR D +I
Sbjct: 4 FLTTRSTALISWARGGAMWPLTFGLACCAIEMMHMTASRYDMDRFGFLFRPSPRHVDFLI 63
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
++GT+T KM+ ++R+Y Q+ +P++VISMGSCAN GG Y+YSY+VVRG D I+PVD+Y+P
Sbjct: 64 ISGTVTYKMSYTVKRLYSQLLDPKWVISMGSCANTGGLYYYSYAVVRGVDNIIPVDVYIP 123
Query: 158 GCPPTAEA 165
GCPP AE+
Sbjct: 124 GCPPHAES 131
>gi|15921820|ref|NP_377489.1| NADH-ubiquinone oxidoreductase subunit K [Sulfolobus tokodaii str.
7]
gi|15622607|dbj|BAB66598.1| 173aa long hypothetical NADH-ubiquinone oxidoreductase subunit K
[Sulfolobus tokodaii str. 7]
Length = 173
Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats.
Identities = 63/144 (43%), Positives = 88/144 (61%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+ L+ W + SL +CC E + R+D ERFG P +S RQ++++++ G
Sbjct: 26 KPIKNLIDWGISFSLWPPHLTTSCCGTEFGAFAAARFDAERFGVLPFSSARQTNLLVIEG 85
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TLT KMA A + VYDQMPEP++VI+MG+C+ GG + SY+ V + +PVDIY PGCP
Sbjct: 86 TLTRKMARAAKIVYDQMPEPKWVIAMGACSLEGGIFWNSYNTVLPSEIGIPVDIYAPGCP 145
Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
EAL I+ LQK+IR VK
Sbjct: 146 TRPEALARAIITLQKRIRSNQTVK 169
>gi|297570897|ref|YP_003696671.1| NADH-quinone oxidoreductase subunit beta [Arcanobacterium
haemolyticum DSM 20595]
gi|296931244|gb|ADH92052.1| NADH-quinone oxidoreductase, B subunit [Arcanobacterium
haemolyticum DSM 20595]
Length = 185
Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 103/154 (66%), Gaps = 2/154 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
E G +T+V+ L WA+ S +T GLACCA+EMM R+D R G RAS
Sbjct: 4 EEKVPAGIGLTTVEALAGWAQQRSPWPVTMGLACCAIEMMSFGATRFDASRIGMEVFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PR +D+MIV+G +++KMA +R +YDQMP+P++VISMG+CA+ GG ++ +Y++V+G D I
Sbjct: 64 PRHADIMIVSGRVSHKMAPVVRNIYDQMPDPKWVISMGACASSGGVFN-NYAIVQGIDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVDIY+PGCPP E LI + L+ + + +
Sbjct: 123 VPVDIYLPGCPPRPEMLINAVFELRNNVMKNRPL 156
>gi|312183553|gb|ADQ42346.1| NADH:ubiquinone oxidoreductase B [Methanosaeta harundinacea]
Length = 190
Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats.
Identities = 54/142 (38%), Positives = 92/142 (64%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ + ++ W R SL ++ + CC VEM+ P YD +RFG PRA+PRQ DVMI++
Sbjct: 44 MGPIKNVLNWGRKNSLWFLMQPMGCCGVEMLVFGCPHYDCDRFGIFPRATPRQVDVMIIS 103
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
G +T K A++ +++++PEP++V+++G CA GG ++ SY+++ + P+D+++PGC
Sbjct: 104 GYITRKYLPAIKNLWEEIPEPKWVMAIGECAISGGPFYDSYNIINDTSKFFPIDVFIPGC 163
Query: 160 PPTAEALIYGILLLQKKIRRVG 181
PP E I G LQ+KI++
Sbjct: 164 PPRPEKFIEGFRGLQEKIKQRE 185
>gi|330508771|ref|YP_004385199.1| F420H2 dehydrogenase subunit B [Methanosaeta concilii GP-6]
gi|328929579|gb|AEB69381.1| F420H2 dehydrogenase, subunit B [Methanosaeta concilii GP-6]
Length = 190
Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 90/145 (62%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ + + W R S+ ++ + CC VEM YD +RFG PR +PRQ+DVMI++
Sbjct: 44 MGPIKNIFNWGRKNSVYFLMQPMGCCGVEMFVFGAAPYDSDRFGCIPRNTPRQTDVMIIS 103
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
G LT K + +++ MPEP++ I++G CA GG ++ SY++++ P+D+Y+PGC
Sbjct: 104 GYLTRKYLPVFKNLWENMPEPKWCIAIGECAISGGPFYDSYNIIQNTGDYFPIDVYIPGC 163
Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
PP E + G++ LQ+KI++ +++
Sbjct: 164 PPRPEQFLEGLMNLQEKIKQRKDLR 188
>gi|254259706|ref|ZP_04950760.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei 1710a]
gi|218528075|sp|Q3JNA0|NUOB2_BURP1 RecName: Full=Putative NADH-quinone oxidoreductase subunit B 2;
AltName: Full=NADH dehydrogenase I subunit B 2; AltName:
Full=NDH-1 subunit B 2
gi|254218395|gb|EET07779.1| putative NADH-quinone oxidoreductase, B subunit [Burkholderia
pseudomallei 1710a]
Length = 167
Score = 184 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 104/151 (68%), Positives = 123/151 (81%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ GF+VT++D + A+ SL +MTFGLA CAVEMM A+ RYD++RFG PRASPR
Sbjct: 7 TLEKDGFIVTTLDAAMAAAQKNSLWYMTFGLARCAVEMMHAAGARYDMDRFGMIPRASPR 66
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q D+MIVAGTLTNKMA A+RRVYDQM EPRYV+SMGSCANGGGYYHY YSVVRGCDRIVP
Sbjct: 67 QCDLMIVAGTLTNKMAPAMRRVYDQMAEPRYVVSMGSCANGGGYYHYGYSVVRGCDRIVP 126
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
VD+YVPGCPPTAEAL+Y ++ LQ+K+
Sbjct: 127 VDVYVPGCPPTAEALVYDLMQLQRKVAERST 157
>gi|332702769|ref|ZP_08422857.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfovibrio africanus
str. Walvis Bay]
gi|332552918|gb|EGJ49962.1| NAD(P)H-quinone oxidoreductase subunit K [Desulfovibrio africanus
str. Walvis Bay]
Length = 179
Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats.
Identities = 75/136 (55%), Positives = 99/136 (72%), Gaps = 3/136 (2%)
Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLT 103
Q + R SL MTFGLACCA+EMM +MPR+D RFG R SPRQSD+M+VAGT++
Sbjct: 26 QFLDVCRAMSLWPMTFGLACCAIEMMAMTMPRFDASRFGAEVFRPSPRQSDLMLVAGTVS 85
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIYVPGCPP 161
NKMA A+ R+Y+QMP P+YVI++G+CA GG + Y +V G D+++PVD+YVPGCPP
Sbjct: 86 NKMAQAVVRLYEQMPAPKYVIAIGNCAISGGPFLFKGQYGIVEGIDKLIPVDVYVPGCPP 145
Query: 162 TAEALIYGILLLQKKI 177
EA + G+ LQ+KI
Sbjct: 146 RPEAFLEGLFKLQEKI 161
>gi|255318317|ref|ZP_05359552.1| NADH-quinone oxidoreductase, B subunit [Acinetobacter
radioresistens SK82]
gi|262379061|ref|ZP_06072217.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
radioresistens SH164]
gi|255304629|gb|EET83811.1| NADH-quinone oxidoreductase, B subunit [Acinetobacter
radioresistens SK82]
gi|262298518|gb|EEY86431.1| trifunctional NADH dehydrogenase I subunit B/C/D [Acinetobacter
radioresistens SH164]
Length = 225
Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats.
Identities = 67/139 (48%), Positives = 89/139 (64%), Gaps = 6/139 (4%)
Query: 31 SEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA- 85
+K +T ++ + V W R S+ FG +CC VE +D+ RFG
Sbjct: 28 ESEVNKNVFMTRLEDVLHTAVNWGRKNSIWPFNFGTSCCYVEYATTLTGVHDMSRFGAEV 87
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RASPRQ+D+MIVAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y YSVV+G
Sbjct: 88 IRASPRQADLMIVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DIYSVVQG 146
Query: 146 CDRIVPVDIYVPGCPPTAE 164
D+I+PVD+YVPGCPP E
Sbjct: 147 VDKIIPVDVYVPGCPPRPE 165
>gi|298530619|ref|ZP_07018021.1| NADH-quinone oxidoreductase, B subunit [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509993|gb|EFI33897.1| NADH-quinone oxidoreductase, B subunit [Desulfonatronospira
thiodismutans ASO3-1]
Length = 182
Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats.
Identities = 73/140 (52%), Positives = 96/140 (68%), Gaps = 3/140 (2%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVA 99
V +++ R SL MTFGLACCA+EMM M R+D RFG R SPRQSD+MIVA
Sbjct: 25 APVQKILNICRAMSLWPMTFGLACCAIEMMGFGMARFDSARFGAEVFRPSPRQSDLMIVA 84
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVP 157
GT+ K++ + +Y+QMP P++VI+MG+CA GG + Y Y +V G DRI+PVD+YVP
Sbjct: 85 GTVNKKLSPLVTMLYEQMPSPKWVIAMGNCAISGGPFVYKNQYGIVEGVDRIIPVDVYVP 144
Query: 158 GCPPTAEALIYGILLLQKKI 177
GCPP E L+ G+ +QKKI
Sbjct: 145 GCPPRPEGLLEGLFQVQKKI 164
>gi|218886689|ref|YP_002436010.1| NADH-quinone oxidoreductase subunit beta [Desulfovibrio vulgaris
str. 'Miyazaki F']
gi|238065123|sp|B8DS03|NUOB_DESVM RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|218757643|gb|ACL08542.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 187
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 78/141 (55%), Positives = 101/141 (71%), Gaps = 3/141 (2%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIV 98
V V +++ R SL MTFGLACCA+EMM M R+D+ RFG R SPRQSD+MIV
Sbjct: 27 VAPVQKILDVCRAMSLWPMTFGLACCAIEMMAVGMARFDISRFGAEVFRPSPRQSDLMIV 86
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDIYV 156
AGT+T KMA AL R+Y+QMP PRYV+++G+CA GG ++ Y++V G D +VPVD+YV
Sbjct: 87 AGTVTRKMAPALVRLYEQMPAPRYVMALGNCAISGGPFNFEGQYAIVEGVDNLVPVDVYV 146
Query: 157 PGCPPTAEALIYGILLLQKKI 177
PGCPP EAL+ G+ +Q KI
Sbjct: 147 PGCPPRPEALLEGLFQIQHKI 167
>gi|296272277|ref|YP_003654908.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arcobacter
nitrofigilis DSM 7299]
gi|296096452|gb|ADG92402.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arcobacter
nitrofigilis DSM 7299]
Length = 271
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 85/143 (59%), Gaps = 1/143 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPR 87
+ EI + L ++ L R+ ++ + C +E+ A P +D ER GF
Sbjct: 7 VPEEIENSNTLEAKLEHLKNIKRSFNVYRVDCGSCNGCEIEVFAAITPMWDPERLGFKLV 66
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
ASPR +D+++ +G +T +M L R Y+ P+P+ V+++G+C + GG +H +YSV G D
Sbjct: 67 ASPRHADILLCSGPVTRQMYYPLLRAYEATPDPKVVVAIGACGSSGGIFHDAYSVWGGID 126
Query: 148 RIVPVDIYVPGCPPTAEALIYGI 170
+++PVD+Y+PGCPP +I+G+
Sbjct: 127 KVIPVDVYIPGCPPHPATIIHGL 149
>gi|119719986|ref|YP_920481.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5]
gi|119525106|gb|ABL78478.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5]
Length = 171
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 68/139 (48%), Positives = 96/139 (69%), Gaps = 1/139 (0%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
T + L WA T SL + F +CC E S PR+D ERFGF P SPRQ+++M++ G
Sbjct: 28 TPIRSLRDWAITFSLWPVHFTTSCCGAEFAATSAPRFDAERFGFLPFNSPRQTNLMVIEG 87
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TLT KM A + VYDQMP P++VI+MG+CA GG ++ SY++VR D I+PV+ ++PGCP
Sbjct: 88 TLTKKMGEAAKIVYDQMPWPKFVIAMGACAIDGGLFYNSYNIVRPKD-ILPVEYFIPGCP 146
Query: 161 PTAEALIYGILLLQKKIRR 179
P EA+ I++LQ+K+R+
Sbjct: 147 PRPEAVAQAIIMLQEKVRK 165
>gi|255513406|gb|EET89672.1| NADH-quinone oxidoreductase, B subunit [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 206
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 62/133 (46%), Positives = 90/133 (67%), Gaps = 1/133 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRASPRQSDVMIVAGTLTN 104
+V W+R+ S+ M FGLACCA+E+M R D ER G R +PRQ DVMIVAG +T
Sbjct: 50 VVKWSRSNSMWPMLFGLACCAIELMDFGAARIDAERKGYLLFRGTPRQCDVMIVAGWVTK 109
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M ++R+Y+QM P+YV++ G CA GG ++ SY++V+G D+++PVD+Y GCPP E
Sbjct: 110 SMVPRVKRLYEQMASPKYVVAYGECATAGGPWYESYNIVKGIDQVLPVDVYAIGCPPKPE 169
Query: 165 ALIYGILLLQKKI 177
L ++ LQ+K+
Sbjct: 170 NLFAALMKLQEKV 182
>gi|290988470|ref|XP_002676938.1| predicted protein [Naegleria gruberi]
gi|284090543|gb|EFC44194.1| predicted protein [Naegleria gruberi]
Length = 131
Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 89/129 (68%), Positives = 102/129 (79%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
++ FL + L WAR GS+ +TFGLACCAVEMM AS RYDLER G R +PRQ
Sbjct: 1 MSSVEFLKAPLHDLFAWARVGSMWPVTFGLACCAVEMMHASASRYDLERKGIFFRPTPRQ 60
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
+D MI+AGTLTNKMA ALR+V+DQM EPRY ISMGSCANGGGYYH+SY VVRG D+IVPV
Sbjct: 61 ADAMIIAGTLTNKMAPALRKVWDQMAEPRYSISMGSCANGGGYYHFSYHVVRGADQIVPV 120
Query: 153 DIYVPGCPP 161
D+YVPGCPP
Sbjct: 121 DVYVPGCPP 129
>gi|315427038|dbj|BAJ48655.1| NADH dehydrogenase I subunit B [Candidatus Caldiarchaeum
subterraneum]
Length = 168
Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/134 (54%), Positives = 91/134 (67%), Gaps = 2/134 (1%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTN 104
L+ W R SL ACC+VE PRYD ERFG+ P S RQSDV++V GT+T+
Sbjct: 29 LLNWGRMASLFPAHITTACCSVEFAATHSPRYDPERFGWLPATGSLRQSDVLVVEGTVTS 88
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTA 163
KMA LR VYDQMPEP++VI+MG+CA GG Y SY+V++G D I+PVD+YVPGCPP
Sbjct: 89 KMAQRLRLVYDQMPEPKWVIAMGACAISGGLYAKDSYNVIQGIDDILPVDVYVPGCPPNP 148
Query: 164 EALIYGILLLQKKI 177
ILLL++KI
Sbjct: 149 STFFQAILLLREKI 162
>gi|297303011|ref|XP_002806097.1| PREDICTED: NADH-quinone oxidoreductase subunit B-like, partial
[Macaca mulatta]
Length = 170
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 70/132 (53%), Positives = 91/132 (68%), Gaps = 2/132 (1%)
Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASAL 110
SL FGL+CC VEM A +D+ RFG RASPRQ+D M++AGT KMA +
Sbjct: 1 KNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPII 60
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
+R+Y+QM EP++VISMGSCAN GG Y YSVV+G D+ +PVD+YVPGCPP EA + G+
Sbjct: 61 QRLYEQMLEPKWVISMGSCANSGGMY-DIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGL 119
Query: 171 LLLQKKIRRVGN 182
+LLQ+ I +
Sbjct: 120 MLLQESIGKERR 131
>gi|70607377|ref|YP_256247.1| NADH:ubiquinone oxidoreductase, B subunit [Sulfolobus
acidocaldarius DSM 639]
gi|68568025|gb|AAY80954.1| NADH:ubiquinone oxidoreductase, B subunit [Sulfolobus
acidocaldarius DSM 639]
Length = 171
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 62/141 (43%), Positives = 85/141 (60%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+ L W + SL +CC E + R+D ER+G P +S RQ++++++ G
Sbjct: 26 KPIKSLKDWGTSFSLWPPHLTTSCCGTEFGAFAAARFDAERYGVLPFSSARQTNLLVIEG 85
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TLT KM A + VYDQMPEP++VI+MG+CA GG + SY+ V D +PVDIY PGCP
Sbjct: 86 TLTRKMGRAAKIVYDQMPEPKFVIAMGACALEGGIFWNSYNTVLPSDLGIPVDIYAPGCP 145
Query: 161 PTAEALIYGILLLQKKIRRVG 181
EAL +LLLQK+IR
Sbjct: 146 TRPEALARAVLLLQKRIRSSN 166
>gi|117925498|ref|YP_866115.1| NADH dehydrogenase subunit B [Magnetococcus sp. MC-1]
gi|117609254|gb|ABK44709.1| Membrane bound protein complex subunit mbxJ [Magnetococcus sp.
MC-1]
Length = 213
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 65/164 (39%), Positives = 94/164 (57%), Gaps = 2/164 (1%)
Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
++ + F + + +L V+ L WAR+ S+ + FG C A+EM PR+D
Sbjct: 20 VDPLKDYFCEATPTVQTGEYLQ-IVEDLFNWARSNSIWVLGFGTGCGAIEMRPLMTPRFD 78
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
R+G RA+PRQS++ IV+G L+ K + R Y+QM P+YV+ +GSC GG Y
Sbjct: 79 AYRYGVQWRATPRQSNLFIVSGYLSVKTLKRVVRAYEQMQSPKYVMGLGSCTINGGMYWD 138
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
SY+ ++ D +PVD+YV GC P EAL+ GI L KKI R G
Sbjct: 139 SYNTIKQLDDYLPVDLYVTGCMPRPEALLSGIEAL-KKIIREGR 181
>gi|327311105|ref|YP_004338002.1| NADH-quinone oxidoreductase subunit B [Thermoproteus uzoniensis
768-20]
gi|326947584|gb|AEA12690.1| NADH-quinone oxidoreductase subunit B [Thermoproteus uzoniensis
768-20]
Length = 202
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+D+++ W S+ + +CC VE+ S P +D ER+G P + RQ++V++V G
Sbjct: 15 AKLDRIIRWGIKWSMWPVHLVTSCCGVEVAHTSAPVFDAERWGVLPFNTMRQTNVILVEG 74
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
T+T KMA L+ VY+QMPEP++VI+MG+CA GG + SY VV+ D IVPVD Y+PGCP
Sbjct: 75 TITRKMAKVLKWVYEQMPEPKFVIAMGACAVRGGLFWNSYHVVQ-VDTIVPVDAYIPGCP 133
Query: 161 PTAEALIYGILLLQKKI 177
PT EA+I ++ KI
Sbjct: 134 PTPEAVIRAFFMVGNKI 150
>gi|154175443|ref|YP_001407625.1| hypothetical protein CCV52592_1637 [Campylobacter curvus 525.92]
gi|112802282|gb|EAT99626.1| HsdS [Campylobacter curvus 525.92]
Length = 274
Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAP 86
++ +I L ++ L R+ S+ + C +E+ A P +D ERFGF
Sbjct: 5 QVPQDIKTANDLTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGFKL 64
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
A+PR +D++I +G +T +M L R Y+ P+P+ V++ G+C + GG +H +YSV G
Sbjct: 65 VANPRHADILICSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSSGGIFHDAYSVWGGI 124
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
D+I+PVD+Y+PGCPP ++IYG+ + I +
Sbjct: 125 DKIIPVDVYIPGCPPHPASVIYGLGMALGIIDQK 158
>gi|157164480|ref|YP_001466173.1| hydrogenase-4 component I [Campylobacter concisus 13826]
gi|112801502|gb|EAT98846.1| hydrogenase-4 component I [Campylobacter concisus 13826]
Length = 274
Score = 181 bits (459), Expect = 5e-44, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGF 84
++ +I L ++ L R+ S+ + C +E+ A P +D ERFGF
Sbjct: 3 LYQVPEDIKTANDLTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGF 62
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
A+PR +D+++ +G +T +M L R Y+ P+P+ V++ G+C + GG +H +YSV
Sbjct: 63 KLVANPRHADILLCSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSTGGIFHDAYSVWG 122
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
G D+I+PVD+Y+PGCPP ++IYG+ + I +
Sbjct: 123 GIDKIIPVDVYIPGCPPHPASVIYGLGMALGIIDQK 158
>gi|170289764|ref|YP_001736580.1| F420H2 dehydrogenase subunit [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170173844|gb|ACB06897.1| F420H2 dehydrogenase subunit [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 174
Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats.
Identities = 64/143 (44%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
+ + W SL + F ACC E ++ P+YD ER GF P RQ +V+ + GT
Sbjct: 30 PIRDIRDWGIAFSLWPVHFTTACCGAEFAASAAPKYDAERLGFLPFIGIRQCNVLFIEGT 89
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
L+ KMA A VY+QMPEP++VI MG+CA GG + SY++VR D I+PV++++PGCPP
Sbjct: 90 LSKKMAEAAIWVYEQMPEPKFVIGMGACAIDGGIFWNSYNIVRPMD-ILPVNVFIPGCPP 148
Query: 162 TAEALIYGILLLQKKIRRVGNVK 184
EA+ I++LQ+KIR+ VK
Sbjct: 149 RPEAVAQAIIMLQRKIRKGELVK 171
>gi|297625729|ref|YP_003687492.1| NADH-quinone oxidoreductase chain B [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296921494|emb|CBL56048.1| NADH-quinone oxidoreductase chain B [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 185
Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats.
Identities = 70/152 (46%), Positives = 103/152 (67%), Gaps = 3/152 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPRAS 89
E G +T+V+Q+ W R S +T GLACCA+EM+ PR D R+G RAS
Sbjct: 4 EEKLPAGIFLTTVEQVQGWMRQASFWPLTMGLACCAIEMISYGGPRADCSRWGQEIFRAS 63
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
PRQ+D+MIVAG + K+A +R+++DQMP P++ I+MG+CA+ GG ++ +Y+VV+G D I
Sbjct: 64 PRQADLMIVAGRVGQKLAPVVRQLWDQMPNPKWCIAMGACASSGGVFN-NYAVVQGVDHI 122
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQK-KIRRV 180
VPVD+Y+PGCPP + LI + L+K K++
Sbjct: 123 VPVDMYLPGCPPRPDMLIDAVFKLKKGKVQHT 154
>gi|255322773|ref|ZP_05363915.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Campylobacter showae
RM3277]
gi|255300115|gb|EET79390.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Campylobacter showae
RM3277]
Length = 276
Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGF 84
++ I L ++ L R+ S+ + C +E+ A P +D ERFGF
Sbjct: 3 LYQVPENIKTANDLTAKLEHLKNIKRSFSVYRIDCGSCNGCEIEIFAAITPMWDPERFGF 62
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
A+PR +D+++ +G +T +M L R Y+ P+P+ V++ G+C + GG ++ +YSV
Sbjct: 63 KLVANPRHADILVCSGPVTRQMYYPLLRAYEAAPDPKIVVAFGACGSTGGIFYDAYSVWG 122
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
G D+I+PVD+Y+PGCPP ++IYG+ + I +
Sbjct: 123 GIDKIIPVDVYIPGCPPHPASVIYGLGMALGIIDQK 158
>gi|15897574|ref|NP_342179.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus P2]
gi|284174895|ref|ZP_06388864.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus 98/2]
gi|6015810|emb|CAB57637.1| hypothetical protein [Sulfolobus solfataricus P2]
gi|13813833|gb|AAK40969.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus P2]
gi|261602337|gb|ACX91940.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus solfataricus
98/2]
Length = 170
Score = 180 bits (456), Expect = 9e-44, Method: Composition-based stats.
Identities = 64/144 (44%), Positives = 90/144 (62%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+ ++ W + SL F +CC E + R+D ER+G P +S RQS+++I+ G
Sbjct: 26 KPIKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYGMLPFSSARQSNILILEG 85
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TL+ KM A R VYDQMPEP+YVI++G+C GG + SY+ V D +PVD+YVPGCP
Sbjct: 86 TLSRKMGRAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTVLPSDIGIPVDLYVPGCP 145
Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
EA+ +L+LQKKIR G +K
Sbjct: 146 IRPEAVARAVLMLQKKIRTQGALK 169
>gi|239907416|ref|YP_002954157.1| NADH-quinone oxidoreductase chain B [Desulfovibrio magneticus RS-1]
gi|239797282|dbj|BAH76271.1| NADH-quinone oxidoreductase chain B [Desulfovibrio magneticus RS-1]
Length = 176
Score = 180 bits (456), Expect = 1e-43, Method: Composition-based stats.
Identities = 73/138 (52%), Positives = 101/138 (73%), Gaps = 3/138 (2%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGT 101
V +LV R S+ MTFGLACCA+EMM M R+D+ R+G R SPRQSD+MIVAGT
Sbjct: 25 VQKLVDVCRAMSIWPMTFGLACCAIEMMAVGMARFDIARYGAEVFRPSPRQSDLMIVAGT 84
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDIYVPGC 159
+ KMA A+ R+Y+QMP PRYV+++G+CA GG ++ Y+V++G D ++PVD+YVPGC
Sbjct: 85 VNKKMAPAVVRLYEQMPAPRYVMALGNCAISGGPFNIENQYNVIQGVDTLIPVDVYVPGC 144
Query: 160 PPTAEALIYGILLLQKKI 177
PP EAL+ G+ +Q+K+
Sbjct: 145 PPRPEALLEGLFAIQEKM 162
>gi|327400429|ref|YP_004341268.1| NADH-quinone oxidoreductase subunit B [Archaeoglobus veneficus
SNP6]
gi|327315937|gb|AEA46553.1| NADH-quinone oxidoreductase, B subunit [Archaeoglobus veneficus
SNP6]
Length = 362
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/138 (44%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
+ + W SL + ACC VE+ YD ER+G RQ++++IV G
Sbjct: 17 PLAPIKRWGAKWSLWAVHLVTACCGVELAHTYASGYDAERWGSLNFGMMRQTNLIIVEGA 76
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
++ KMA ALR ++QMPEP++VI MG+C GG + SY + R IVPVD Y+PGCPP
Sbjct: 77 ISKKMARALRITWEQMPEPKFVIVMGACGIEGGLFWNSYHIARP-SEIVPVDYYIPGCPP 135
Query: 162 TAEALIYGILLLQKKIRR 179
T EALI I LQKKI +
Sbjct: 136 TPEALIRAIRALQKKIEK 153
>gi|224373442|ref|YP_002607814.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Nautilia
profundicola AmH]
gi|223588944|gb|ACM92680.1| NADH-ubiquinone oxidoreductase 20 kda subunit [Nautilia
profundicola AmH]
Length = 157
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 61/138 (44%), Positives = 92/138 (66%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
V +AR+ S + F CC++EM+ A PRYD ER+G+ +PRQ+D+M + G
Sbjct: 3 KVLDFFNYARSKSPWIVHFCSGCCSLEMLAAMGPRYDWERYGYIMTPTPRQADIMFITGL 62
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
++ K+ AL R Y+QMPEPRYV+++G+CA GG Y+ S SV++ I+P D++V GCPP
Sbjct: 63 VSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSVSVIKNMTEILPADVFVAGCPP 122
Query: 162 TAEALIYGILLLQKKIRR 179
EA+I G+ L++KI+R
Sbjct: 123 RPEAIIAGLEELKEKIKR 140
>gi|291334203|gb|ADD93870.1| hypothetical protein [uncultured marine bacterium
MedDCM-OCT-S08-C1340]
Length = 118
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 91/116 (78%), Positives = 99/116 (85%)
Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
MM A RYDL+RFG R SPRQSDVMIVAGTL NKMA ALR+VYDQM +P++VISMGS
Sbjct: 1 MMHAGASRYDLDRFGMLFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMADPKWVISMGS 60
Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
CANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEAL+YGIL LQ KIR +K
Sbjct: 61 CANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGILQLQNKIRNKNRIK 116
>gi|227874585|ref|ZP_03992748.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
gi|269977615|ref|ZP_06184582.1| NADH-quinone oxidoreductase subunit b [Mobiluncus mulieris 28-1]
gi|306817869|ref|ZP_07451608.1| NADH-quinone oxidoreductase subunit B [Mobiluncus mulieris ATCC
35239]
gi|307701323|ref|ZP_07638344.1| NADH dehydrogenase subunit B [Mobiluncus mulieris FB024-16]
gi|227844794|gb|EEJ54940.1| NADH dehydrogenase (quinone) [Mobiluncus mulieris ATCC 35243]
gi|269934218|gb|EEZ90785.1| NADH-quinone oxidoreductase subunit b [Mobiluncus mulieris 28-1]
gi|304649348|gb|EFM46634.1| NADH-quinone oxidoreductase subunit B [Mobiluncus mulieris ATCC
35239]
gi|307613484|gb|EFN92732.1| NADH dehydrogenase subunit B [Mobiluncus mulieris FB024-16]
Length = 184
Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats.
Identities = 74/152 (48%), Positives = 112/152 (73%), Gaps = 4/152 (2%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG-FAPR 87
EI+ KG +D +V +AR+ S+ +T GLACCA+EMM + PR+D+ RFG R
Sbjct: 4 FPPEISEKG--GKPLDTVVDFARSLSIWPVTMGLACCAIEMMATAAPRFDIARFGSEVFR 61
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
ASPR +DVM+V+G +++KMA+ +R VYD+M +P++VISMG+CA+ GG ++ +Y++V+GCD
Sbjct: 62 ASPRHADVMLVSGRVSHKMATIMRNVYDEMADPKWVISMGACASSGGIFN-NYAIVQGCD 120
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+VPVDIY+PGCPP E L+ +L L+ I++
Sbjct: 121 HVVPVDIYLPGCPPRPEMLLGALLALRDHIKK 152
>gi|126464931|ref|YP_001040040.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1]
gi|126013754|gb|ABN69132.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1]
Length = 165
Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 56/134 (41%), Positives = 86/134 (64%), Gaps = 3/134 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
+ + F C +E++ A P YD ERFG S R +D+++V G +T K A
Sbjct: 28 RYTPWLIHFNTGACNGCDIEVLAAITPLYDPERFGIKLAPSIRHADILVVTGAVTKKAAE 87
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+R+Y+QMP+P++V+++G+CA GG +H SYSV+ G D+++PVDIYVPGCPP EA++
Sbjct: 88 RLKRLYEQMPDPKFVVAVGACAISGGVFHNSYSVLAGTDKVIPVDIYVPGCPPRPEAILD 147
Query: 169 GILLLQKKIRRVGN 182
GI+ L K++
Sbjct: 148 GIVKLLKRLESGET 161
>gi|227827741|ref|YP_002829521.1| NADH-quinone oxidoreductase subunit beta [Sulfolobus islandicus
M.14.25]
gi|227830450|ref|YP_002832230.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
L.S.2.15]
gi|229585012|ref|YP_002843514.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
M.16.27]
gi|238619913|ref|YP_002914739.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
M.16.4]
gi|284997944|ref|YP_003419711.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
L.D.8.5]
gi|227456898|gb|ACP35585.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
L.S.2.15]
gi|227459537|gb|ACP38223.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
M.14.25]
gi|228020062|gb|ACP55469.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
M.16.27]
gi|238380983|gb|ACR42071.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
M.16.4]
gi|284445839|gb|ADB87341.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
L.D.8.5]
gi|323474809|gb|ADX85415.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
REY15A]
gi|323477516|gb|ADX82754.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
HVE10/4]
Length = 170
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 62/143 (43%), Positives = 89/143 (62%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+ ++ W + SL F +CC E + R+D ER+G P +S RQS+++I+ G
Sbjct: 26 KPIKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYGMLPFSSARQSNILILEG 85
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TL+ KM A R VYDQMPEP++VI++G+C GG + SY+ V D +PVD+YVPGCP
Sbjct: 86 TLSRKMGRAARIVYDQMPEPKFVIALGACILEGGIFWNSYNTVLPSDLGIPVDLYVPGCP 145
Query: 161 PTAEALIYGILLLQKKIRRVGNV 183
EA+ +L+LQKKIR G +
Sbjct: 146 IRPEAVARAVLMLQKKIRTQGAL 168
>gi|229579262|ref|YP_002837660.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
Y.G.57.14]
gi|229581977|ref|YP_002840376.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
Y.N.15.51]
gi|228009976|gb|ACP45738.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
Y.G.57.14]
gi|228012693|gb|ACP48454.1| NADH-quinone oxidoreductase, B subunit [Sulfolobus islandicus
Y.N.15.51]
Length = 170
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 62/143 (43%), Positives = 89/143 (62%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+ ++ W + SL F +CC E + R+D ER+G P +S RQS+++I+ G
Sbjct: 26 KPIKSIIDWGISFSLWPPHFTTSCCGTEFGAFAAARFDAERYGMLPFSSARQSNILILEG 85
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
TL+ KM A R VYDQMPEP++VI++G+C GG + SY+ V D +PVD+YVPGCP
Sbjct: 86 TLSRKMGRAARIVYDQMPEPKFVIALGACILEGGIFWNSYNTVLPSDLGIPVDLYVPGCP 145
Query: 161 PTAEALIYGILLLQKKIRRVGNV 183
EA+ +L+LQKKIR G +
Sbjct: 146 IRPEAVARAVLMLQKKIRTQGAL 168
>gi|302824537|ref|XP_002993911.1| hypothetical protein SELMODRAFT_4550 [Selaginella moellendorffii]
gi|302824543|ref|XP_002993914.1| hypothetical protein SELMODRAFT_4549 [Selaginella moellendorffii]
gi|300138278|gb|EFJ05052.1| hypothetical protein SELMODRAFT_4550 [Selaginella moellendorffii]
gi|300138281|gb|EFJ05055.1| hypothetical protein SELMODRAFT_4549 [Selaginella moellendorffii]
Length = 209
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 12/181 (6%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
+G TVN +++ S ++ D + T+++ WAR S + +
Sbjct: 14 IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G +CC++E R D +R G PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP
Sbjct: 63 GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122
Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+Y I+MG+ GG +S VRG D+ +P DIY PGCPP EALI I+ +KK+ R
Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182
Query: 180 V 180
Sbjct: 183 E 183
>gi|118431453|ref|NP_147936.2| NuoB-like protein [Aeropyrum pernix K1]
gi|116062777|dbj|BAA80425.2| NuoB homolog [Aeropyrum pernix K1]
Length = 199
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 58/140 (41%), Positives = 92/140 (65%), Gaps = 1/140 (0%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
+D++V WA + SL + +CC+ E PR D E+FG P PRQ++++I+ GT
Sbjct: 30 PLDKMVDWATSFSLWPVHLTTSCCSTEFAATFAPRIDGEQFGALPWVGPRQTNLIIIEGT 89
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+T KMA A+R ++QMP P++ I+MG+CA GG ++ SY++V+ +++P+DIY+PGCPP
Sbjct: 90 VTKKMACAVRLTWEQMPHPKFAIAMGACALDGGLFYNSYNIVKPW-QVLPIDIYIPGCPP 148
Query: 162 TAEALIYGILLLQKKIRRVG 181
E + I+ LQ+KIR
Sbjct: 149 RPEGVARAIVELQRKIRSKK 168
>gi|320161606|ref|YP_004174831.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein
[Anaerolinea thermophila UNI-1]
gi|319995460|dbj|BAJ64231.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit family protein
[Anaerolinea thermophila UNI-1]
Length = 173
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 57/139 (41%), Positives = 88/139 (63%), Gaps = 3/139 (2%)
Query: 43 VDQLVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+D++ WAR S + + C +E++ PRYDLERFG SPR +DV+I
Sbjct: 14 LDKVRLWARVNSPWAIHYNSGSCNGCDIEIVATLTPRYDLERFGVKLEGSPRHADVLICT 73
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
G +T + L R+Y QMPEP++V+++GSC GG +H Y++ G D ++PVD+++PGC
Sbjct: 74 GPVTRQSRDRLLRIYHQMPEPKFVVAVGSCGLSGGVFHGLYNIAGGIDEVLPVDVFIPGC 133
Query: 160 PPTAEALIYGILLLQKKIR 178
PP EA+IYG++ L + +R
Sbjct: 134 PPRPEAIIYGLVQLLEGLR 152
>gi|159041010|ref|YP_001540262.1| NADH-quinone oxidoreductase, B subunit [Caldivirga maquilingensis
IC-167]
gi|157919845|gb|ABW01272.1| NADH-quinone oxidoreductase, B subunit [Caldivirga maquilingensis
IC-167]
Length = 374
Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats.
Identities = 65/139 (46%), Positives = 86/139 (61%), Gaps = 1/139 (0%)
Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
D L +W S+ ACC VE AS P YD ER+GF P PRQ++ +++ GT+T
Sbjct: 25 DSLASWGTKFSIWPAHLVTACCGVEFAHASAPGYDAERWGFLPIFGPRQTNSIVIEGTVT 84
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
KMA ++ Y+QMP P++VI+MGSCA GG + SY VVR + IVPVD +V GCPPT
Sbjct: 85 RKMARIVKTAYEQMPYPKFVIAMGSCAMEGGVFWNSYHVVR-VNEIVPVDAWVMGCPPTP 143
Query: 164 EALIYGILLLQKKIRRVGN 182
EA+I I ++Q KI
Sbjct: 144 EAVIRAIRMVQSKIEGKEV 162
>gi|255961309|ref|YP_003097491.1| NADH dehydrogenase subunit K [Selaginella moellendorffii]
gi|254941481|gb|ACT88996.1| NADH dehydrogenase subunit K [Selaginella moellendorffii]
Length = 213
Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats.
Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 12/181 (6%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
+G TVN +++ S ++ D + T+++ WAR S + +
Sbjct: 14 IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G +CC++E R D +R G PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP
Sbjct: 63 GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122
Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+Y I+MG+ GG +S VRG D+ +P DIY PGCPP EALI I+ +KK+ R
Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182
Query: 180 V 180
Sbjct: 183 E 183
>gi|283852201|ref|ZP_06369474.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B]
gi|283572427|gb|EFC20414.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B]
Length = 176
Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats.
Identities = 74/150 (49%), Positives = 104/150 (69%), Gaps = 4/150 (2%)
Query: 32 EITHKGFLVTS-VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRAS 89
+ + T V +LV R S+ MTFGLACCA+EMM M R+D+ R+G R S
Sbjct: 13 DTVDPALISTPAVQKLVDVCRAMSIWPMTFGLACCAIEMMAVGMARFDIARYGAEVFRPS 72
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCD 147
PRQSD+MIVAGT+ K+A A+ R+++QMP PRYV+++G+CA GG ++ Y+VV+G D
Sbjct: 73 PRQSDLMIVAGTVNKKIAPAVVRLFEQMPAPRYVMALGNCAISGGPFNIEGQYNVVQGVD 132
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
++PVD+YVPGCPP EAL+ G+ +Q+KI
Sbjct: 133 TLIPVDVYVPGCPPRPEALLEGLFAIQQKI 162
>gi|296399240|gb|ADH10415.1| NADH-plastoquinone oxidoreductase subunit K [Selaginella
moellendorffii]
Length = 212
Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats.
Identities = 70/181 (38%), Positives = 100/181 (55%), Gaps = 12/181 (6%)
Query: 1 MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
+G TVN +++ S ++ D + T+++ WAR S + +
Sbjct: 14 IGNNTVNDLMVNPMGRPSGDRATPD-----------SIVPTTLNDSTNWARLSSSRPLPY 62
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G +CC++E R D +R G PR+SPRQ+D+ I AGT T KMA +L R Y+QMPEP
Sbjct: 63 GTSCCSIEFAPLIGSRSDSDRHGSVPRSSPRQADLTITAGTATMKMAPSLVRSYEQMPEP 122
Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+Y I+MG+ GG +S VRG D+ +P DIY PGCPP EALI I+ +KK+ R
Sbjct: 123 KYAIAMGARTVTGGMLSTDPHSTVRGVDKSIPADIYPPGCPPKPEALIDAIIKPRKKVSR 182
Query: 180 V 180
Sbjct: 183 E 183
>gi|237809381|ref|YP_002893821.1| NADH dehydrogenase subunit B [Tolumonas auensis DSM 9187]
gi|259514690|sp|C4LB32|NUOB_TOLAT RecName: Full=NADH-quinone oxidoreductase subunit B; AltName:
Full=NADH dehydrogenase I subunit B; AltName: Full=NDH-1
subunit B
gi|237501642|gb|ACQ94235.1| NADH-quinone oxidoreductase, B subunit [Tolumonas auensis DSM 9187]
Length = 223
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 9/164 (5%)
Query: 9 KIISGQSSCSLEKVDADFSRISSEI---THKGFLVTSVDQL----VTWARTGSLMWMTFG 61
+ + +E+ A+ + ++ +G L+ ++ + V W R SL FG
Sbjct: 4 TLTRIDPNAPIERYPAEKKQTVNDPLQEVGRGILLGKLENVLNSTVNWGRKNSLWPYNFG 63
Query: 62 LACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
++CC VEM A +D+ RFG RASPRQ+D M++AGT KMA ++R+Y+Q+ EP
Sbjct: 64 ISCCYVEMTTAFTAVHDVARFGAEVIRASPRQADFMVIAGTPFIKMAPVIQRLYEQLLEP 123
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
++VISMG+CAN GG Y YSVV+G D+ +PVD+Y+PGCPP E
Sbjct: 124 KWVISMGACANSGGMY-DIYSVVQGVDKFLPVDVYIPGCPPRPE 166
>gi|164662629|ref|XP_001732436.1| hypothetical protein MGL_0211 [Malassezia globosa CBS 7966]
gi|159106339|gb|EDP45222.1| hypothetical protein MGL_0211 [Malassezia globosa CBS 7966]
Length = 120
Score = 177 bits (448), Expect = 9e-43, Method: Composition-based stats.
Identities = 92/112 (82%), Positives = 101/112 (90%)
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
M AS PRYD +R G RA+PRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSC
Sbjct: 1 MHASGPRYDQDRLGIVFRATPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSC 60
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
ANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPP+AEAL+YGIL LQ+KIRR
Sbjct: 61 ANGGGYYHYSYSVVRGCDRIVPVDLYVPGCPPSAEALLYGILQLQRKIRRSR 112
>gi|225847872|ref|YP_002728035.1| NADH dehydrogenase subunit B [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643594|gb|ACN98644.1| NADH-quinone oxidoreductase, b subunit [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 172
Score = 177 bits (448), Expect = 9e-43, Method: Composition-based stats.
Identities = 73/141 (51%), Positives = 110/141 (78%), Gaps = 1/141 (0%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ G ++T+V+++++W R SL ++ GLACCA+EMM + R+D +R G R SPRQS
Sbjct: 5 VNSGIILTTVEEVLSWGRRNSLWPVSIGLACCAIEMMHTAASRFDTDRLGIIFRGSPRQS 64
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DV+IVAGT+ NK+A L+ +Y+QMP+P++VISMG C++GGG + +YS ++G DRI+PVD
Sbjct: 65 DVLIVAGTVVNKVAPMLKLIYEQMPDPKWVISMGGCSSGGGPFP-TYSTLQGVDRIIPVD 123
Query: 154 IYVPGCPPTAEALIYGILLLQ 174
+Y+PGCPPT +AL++GI+ LQ
Sbjct: 124 VYIPGCPPTPQALLWGIMELQ 144
>gi|149195032|ref|ZP_01872124.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Caminibacter mediatlanticus TB-2]
gi|149134745|gb|EDM23229.1| proton-translocating NADH-quinone oxidoreductase, B subunit
[Caminibacter mediatlanticus TB-2]
Length = 157
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 59/138 (42%), Positives = 92/138 (66%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
V +AR+ S + F CC++EM+ A PRYD ER+G+ +PRQ+D++ + G
Sbjct: 3 KVLDFFNYARSKSPWIVHFCSGCCSLEMLAAMGPRYDWERYGYMMTPTPRQADIIFITGL 62
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
++ K+ AL R Y+QMPEPRYV+++G+CA GG Y+ S SV++ I+P D++V GCPP
Sbjct: 63 VSKKILPALLRTYEQMPEPRYVVAIGACAYDGGPYNDSPSVIKNMTEILPADVFVAGCPP 122
Query: 162 TAEALIYGILLLQKKIRR 179
EA++ G+ L++KI+R
Sbjct: 123 KPEAIVAGLEELKEKIKR 140
>gi|298346119|ref|YP_003718806.1| NADH dehydrogenase [Mobiluncus curtisii ATCC 43063]
gi|304390121|ref|ZP_07372075.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315654698|ref|ZP_07907604.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii ATCC
51333]
gi|315657378|ref|ZP_07910260.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298236180|gb|ADI67312.1| NADH dehydrogenase (quinone) [Mobiluncus curtisii ATCC 43063]
gi|304326603|gb|EFL93847.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315491162|gb|EFU80781.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii ATCC
51333]
gi|315491850|gb|EFU81459.1| NADH-quinone oxidoreductase subunit B [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 181
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 67/142 (47%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMI 97
L +++ +AR+ S+ +T GLACCA+EMM + R+D+ RFG R+SPR +DVM+
Sbjct: 9 LAAFPEKITDFARSLSIWPVTMGLACCAIEMMATAASRFDIARFGSEVFRSSPRHADVML 68
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
V+G +++KMA+ +R VYD+M +P++VISMG+CA+ GG ++ +Y++V+GCD +VPVDIY+P
Sbjct: 69 VSGRVSHKMATIMRNVYDEMADPKWVISMGACASSGGVFN-NYAIVQGCDHVVPVDIYLP 127
Query: 158 GCPPTAEALIYGILLLQKKIRR 179
GCPP E L+ +L L+ I++
Sbjct: 128 GCPPRPEMLLGALLSLRDHIKQ 149
>gi|257460517|ref|ZP_05625618.1| formate hydrogenlyase subunit 7 [Campylobacter gracilis RM3268]
gi|257441848|gb|EEV16990.1| formate hydrogenlyase subunit 7 [Campylobacter gracilis RM3268]
Length = 274
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 9/160 (5%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGF 84
++ I + L ++ L R+ S+ + C +E+ + P +D ERFGF
Sbjct: 3 LYQVPENIKNANDLTAKLELLKNIKRSFSVYRIDCGSCNGCEIEIFASITPMWDPERFGF 62
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
A+PR +D+++ G +T +M L R Y+ P+P+ V+++ +C + GG +H +YSV
Sbjct: 63 KLVANPRHADILVCTGPVTRQMYYPLLRAYEAAPDPKIVVALRACGSTGGIFHDAYSVWS 122
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGI--------LLLQKK 176
G D+IVPVD+Y+PGCPP ++IYG+ LQKK
Sbjct: 123 GIDKIVPVDVYIPGCPPHPASIIYGLGMALGIIDQKLQKK 162
>gi|145592467|ref|YP_001154469.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM
13514]
gi|145284235|gb|ABP51817.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 144
Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats.
Identities = 66/139 (47%), Positives = 89/139 (64%), Gaps = 1/139 (0%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
++ VD+L W SL ACC VE A YD ERFG P S RQS+++++
Sbjct: 4 ILKVVDRLRRWGTKWSLWPPHLVTACCGVEFGHAFGSAYDAERFGMLPMGSLRQSNIIVI 63
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
GT+T KMA ++ VY+QMPEP+YVI+MG+CA GG ++ SY +V ++VPVD YV G
Sbjct: 64 EGTITLKMAKFVKYVYEQMPEPKYVIAMGACAIKGGVFYGSYHMV-PAPKVVPVDGYVSG 122
Query: 159 CPPTAEALIYGILLLQKKI 177
CPPT EAL+ + LQ+KI
Sbjct: 123 CPPTPEALLKAVKELQEKI 141
>gi|239904914|ref|YP_002951652.1| Ech hydrogenase subunit EchC [Desulfovibrio magneticus RS-1]
gi|239794777|dbj|BAH73766.1| Ech hydrogenase subunit EchC [Desulfovibrio magneticus RS-1]
Length = 147
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 85/140 (60%), Gaps = 3/140 (2%)
Query: 43 VDQLVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ L+ R S + F C +E++ P YD+ERFG +P+ +DV++V
Sbjct: 2 LGNLINQGRIKSPWVVHFDCGSCNGCDIEVLACLTPLYDIERFGILNIGNPKHADVLLVT 61
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GT+ + L+ +YDQMP P+ VI++G+C GG + +Y+VV G D+++PVD+YVPGC
Sbjct: 62 GTVNQRNKHVLKNIYDQMPTPKAVIAIGACGCSGGVFREAYNVVGGVDKVIPVDVYVPGC 121
Query: 160 PPTAEALIYGILLLQKKIRR 179
P EA+I G++ +K+++
Sbjct: 122 PARPEAIIDGVVAALEKVKK 141
>gi|332701743|ref|ZP_08421831.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio africanus
str. Walvis Bay]
gi|332551892|gb|EGJ48936.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio africanus
str. Walvis Bay]
Length = 179
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 43 VDQLVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ + +R S + F C +E + P YD+ERFG +P+ +DV++V
Sbjct: 4 IKNFINKSRIKSPWIVHFDCGSCNGCDIETLAVLTPLYDVERFGIINVGNPKHADVLLVT 63
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GT+ + L+ +Y+QMP P+ V+++G+C GG + Y+VV G DR++PVD+YVPGC
Sbjct: 64 GTVNYRNQHVLKTIYEQMPHPKAVVAIGACGLSGGVFRDCYNVVGGVDRVIPVDVYVPGC 123
Query: 160 PPTAEALIYGILLLQKK 176
PP EA+I G++L +K
Sbjct: 124 PPKPEAIIDGVVLGLEK 140
>gi|257053296|ref|YP_003131129.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
utahensis DSM 12940]
gi|256692059|gb|ACV12396.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
utahensis DSM 12940]
Length = 183
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 58/143 (40%), Positives = 87/143 (60%), Gaps = 3/143 (2%)
Query: 45 QLVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
+++ WAR S + C +E + A MPRYD+ERFG + +PR +DV++ G
Sbjct: 3 RIIDWARNRSPWILHMNCGSCNGCDIETLDALMPRYDVERFGIQQKDTPRHADVLVATGP 62
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+T +MA L R+Y+QMPEP+ VI+ GSCA GG + Y+ G D ++PVD+YVPGCP
Sbjct: 63 VTKQMAPRLERIYEQMPEPKLVIAAGSCAATGGVFQDCYNCHEGIDDVIPVDMYVPGCPI 122
Query: 162 TAEALIYGILLLQKKIRRVGNVK 184
+ E LI GI+ L ++ + +
Sbjct: 123 SPETLIDGIVALLEEAGQEAKAE 145
>gi|308232348|ref|ZP_07415800.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu001]
gi|308370160|ref|ZP_07420526.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu002]
gi|308371244|ref|ZP_07424331.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu003]
gi|308372436|ref|ZP_07428696.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu004]
gi|308374785|ref|ZP_07437401.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu006]
gi|308376000|ref|ZP_07445800.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu007]
gi|308377233|ref|ZP_07441611.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu008]
gi|308378201|ref|ZP_07668686.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu009]
gi|308380583|ref|ZP_07490460.2| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu011]
gi|308214175|gb|EFO73574.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu001]
gi|308324950|gb|EFP13801.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu002]
gi|308329366|gb|EFP18217.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu003]
gi|308333195|gb|EFP22046.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu004]
gi|308340526|gb|EFP29377.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu006]
gi|308344466|gb|EFP33317.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu007]
gi|308348462|gb|EFP37313.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu008]
gi|308353092|gb|EFP41943.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu009]
gi|308361019|gb|EFP49870.1| NADH dehydrogenase subunit I B nuoB [Mycobacterium tuberculosis
SUMu011]
Length = 157
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 67/126 (53%), Positives = 97/126 (76%), Gaps = 2/126 (1%)
Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPR-ASPRQSDVMIVAGTLTNKMASALRRV 113
+ TFGLACCA+EMM + PR+D+ RFG A+PRQ+D+MIVAG ++ KMA LR++
Sbjct: 1 MWPATFGLACCAIEMMATAGPRFDIARFGMERFSATPRQADLMIVAGRVSQKMAPVLRQI 60
Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
YDQM EP++V++MG CA+ GG ++ +Y++V+G D +VPVDIY+PGCPP E L++ IL L
Sbjct: 61 YDQMAEPKWVLAMGVCASSGGMFN-NYAIVQGVDHVVPVDIYLPGCPPRPEMLLHAILKL 119
Query: 174 QKKIRR 179
+KI++
Sbjct: 120 HEKIQQ 125
>gi|212224742|ref|YP_002307978.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
[Thermococcus onnurineus NA1]
gi|212009699|gb|ACJ17081.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
[Thermococcus onnurineus NA1]
Length = 175
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 58/161 (36%), Positives = 94/161 (58%), Gaps = 2/161 (1%)
Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYD 78
KV AD +R + + + L + QL + ++ +C C +E++ A PRYD
Sbjct: 4 KVPADQNRTNGTTSEREMLEKRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYD 63
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
ERFG SPR +DV++V G +T++ ++ VY+Q P+P+ VI++GSC GG ++
Sbjct: 64 AERFGVKLVGSPRHADVLLVTGPVTDQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVFYE 123
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
S I+PVD+YVPGCPP EA++YG++L +K+ +
Sbjct: 124 SPFTNAPLSNIIPVDVYVPGCPPRPEAILYGVVLALEKLAK 164
>gi|118474722|ref|YP_891335.1| hydrogenase-Ni,Fe-hydrogenase III small subunit [Campylobacter
fetus subsp. fetus 82-40]
gi|118413948|gb|ABK82368.1| hydrogenase-ni,fe-hydrogenase III small subunit [Campylobacter
fetus subsp. fetus 82-40]
Length = 271
Score = 174 bits (441), Expect = 6e-42, Method: Composition-based stats.
Identities = 53/153 (34%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPR 87
+ +I L + ++ L R+ S+ + C +E+ A P +D ERFGF
Sbjct: 4 VPDDIQRSNDLNSKLNLLKNIKRSFSVFRIDCGSCNGCEIEIFAALSPLWDPERFGFKLV 63
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
A+PR +D++IV+G +T +M L R Y+ P+P+ V+ G+C GG +H SY+V G D
Sbjct: 64 ANPRHADILIVSGPITRQMYYPLLRAYEATPDPKIVVGFGACGVSGGIFHDSYAVWGGAD 123
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+I+PVD++VPGCPP ++IY + I +
Sbjct: 124 KILPVDVFVPGCPPHPASIIYALATAVGLIEQK 156
>gi|126460649|ref|YP_001056927.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis
JCM 11548]
gi|126250370|gb|ABO09461.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis
JCM 11548]
Length = 145
Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 65/139 (46%), Positives = 87/139 (62%), Gaps = 1/139 (0%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
L +VD++ W SL ACC VE A YD ERFG P S RQS+++++
Sbjct: 5 LKKTVDKVAKWGTKWSLWPPHLVTACCGVEFGHAFGSAYDAERFGMLPMGSLRQSNIIVI 64
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
GT+T KMA ++ VY+QMPEP+YVI+MG+CA GG ++ SY +V ++VPV YV G
Sbjct: 65 EGTITMKMAKFVKYVYEQMPEPKYVIAMGACAIKGGVFYGSYHMV-PASKVVPVHQYVSG 123
Query: 159 CPPTAEALIYGILLLQKKI 177
CPPT EAL+ + LQ KI
Sbjct: 124 CPPTPEALLKAVKNLQDKI 142
>gi|14520920|ref|NP_126395.1| NADH dehydrogenase subunit B [Pyrococcus abyssi GE5]
gi|5458137|emb|CAB49626.1| nuoB NADH dehydrogenase I, subunit B [Pyrococcus abyssi GE5]
Length = 195
Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 78/137 (56%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ L WAR SL ++F C +EM RYD+ERFG P SPRQ D+ ++ G +
Sbjct: 10 FEPLFNWARKKSLWIVSFCTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYV 69
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 70 TPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPR 129
Query: 163 AEALIYGILLLQKKIRR 179
EA++ GI L + I
Sbjct: 130 PEAVLDGIYKLMEMIEN 146
>gi|11499417|ref|NP_070656.1| F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative
[Archaeoglobus fulgidus DSM 4304]
gi|2648716|gb|AAB89421.1| F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative
[Archaeoglobus fulgidus DSM 4304]
Length = 353
Score = 174 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLV----TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA 88
I+ F+ + + W SL + ACC E+ A YD ER G
Sbjct: 2 ISMDEFIEFVRGGPLGPIKKWGTKWSLWPVHLVTACCGAELAHAFACGYDGERIGALNYG 61
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
RQ++++IV G +T KMA LR ++QMP+P++VI MG+C GG + Y +V+ D
Sbjct: 62 IARQTNLIIVEGAITRKMAKVLRITWEQMPDPKFVIVMGACGLQGGIFWNGYHMVKPSD- 120
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+VPVD ++PGCPPT EAL+ GI LQ KI
Sbjct: 121 VVPVDFFIPGCPPTPEALLRGIRQLQFKIE 150
>gi|67528182|ref|XP_661901.1| hypothetical protein AN4297.2 [Aspergillus nidulans FGSC A4]
gi|40740847|gb|EAA60037.1| hypothetical protein AN4297.2 [Aspergillus nidulans FGSC A4]
Length = 184
Score = 174 bits (440), Expect = 7e-42, Method: Composition-based stats.
Identities = 86/116 (74%), Positives = 95/116 (81%)
Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
YD +R G RASPRQSDVMIVAGTLTNKMA ALR+VYDQMP+PR+VISMGS
Sbjct: 64 EGAMQYVLYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVISMGS 123
Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
CANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPT+EAL+YGI LQKK+R +
Sbjct: 124 CANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGIFQLQKKMRHTRITR 179
>gi|18977816|ref|NP_579173.1| NADH dehydrogenase subunit B [Pyrococcus furiosus DSM 3638]
gi|18893567|gb|AAL81568.1| NADH dehydrogenase subunit [Pyrococcus furiosus DSM 3638]
Length = 192
Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats.
Identities = 53/137 (38%), Positives = 77/137 (56%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ L WAR SL + F C +EM RYDLERFG P SPRQ D+ ++ G +
Sbjct: 7 FEPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDLERFGIMPDPSPRQYDLFLITGYV 66
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T K + Y+ P+P+YV++ GSC GG Y +Y+ ++ D+ +PVD+Y+ GC P
Sbjct: 67 TPKTLKRIIITYEMAPDPKYVLAHGSCPINGGIYWDAYNAIKQLDKYIPVDVYIAGCMPR 126
Query: 163 AEALIYGILLLQKKIRR 179
EA++ GI L + I
Sbjct: 127 PEAVMDGIKKLMEMIEN 143
>gi|57642024|ref|YP_184502.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
[Thermococcus kodakarensis KOD1]
gi|57160348|dbj|BAD86278.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
[Thermococcus kodakarensis KOD1]
Length = 176
Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats.
Identities = 56/160 (35%), Positives = 94/160 (58%), Gaps = 2/160 (1%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDL 79
V A+ + S + + L + QL + ++ +C C +E++ A PRYD
Sbjct: 5 VPANQNGQKSNPSERERLEKRIAQLCRFLGKSPWVFHVNSGSCNGCDIEIIAALTPRYDA 64
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
ERFG SPR +D+++V G +TN+ ++ VY+Q P+P+ VI++G+C GG ++ S
Sbjct: 65 ERFGVKLVGSPRHADILVVTGPVTNQSLERVKLVYEQTPDPKIVIAVGACPTGGSVFYES 124
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
DR++PVD+YVPGCPP EA+++G++L +K+ R
Sbjct: 125 PFTNAPLDRVIPVDVYVPGCPPRPEAILHGVVLALEKLAR 164
>gi|254847826|gb|ACT83735.1| NADH dehydrogenase ubiquinone Fe-S 7 protein-like protein
[Piriformospora indica]
Length = 120
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 89/112 (79%), Positives = 98/112 (87%)
Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA 130
+ RYD +R G RASPRQSD+MIVAGTLTNKMA ALR+VYDQMPEPR+VISMGSCA
Sbjct: 1 HMAAARYDQDRLGIVFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCA 60
Query: 131 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQ+K+RR
Sbjct: 61 NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQRKMRRNRK 112
>gi|326390323|ref|ZP_08211882.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter
ethanolicus JW 200]
gi|325993600|gb|EGD52033.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter
ethanolicus JW 200]
Length = 198
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 83/137 (60%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+D L+ + R S+ + + C AVE+ + R+D+ERFG P A+PRQ+DV++V G +
Sbjct: 13 IDNLIDFFRKRSIWMLHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYV 72
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
+ K + ++Y+QMPEP++V++ GSC GG Y SY+ + +PVDI V GC P
Sbjct: 73 SLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPR 132
Query: 163 AEALIYGILLLQKKIRR 179
EA+I + L + I+
Sbjct: 133 PEAVIDALQTLMEMIQS 149
>gi|268680487|ref|YP_003304918.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum
deleyianum DSM 6946]
gi|268618518|gb|ACZ12883.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum
deleyianum DSM 6946]
Length = 274
Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAP 86
+ S+I L ++ L R+ S+ + C +E+ A P +D ERFGF
Sbjct: 5 EVPSDIALANSLEEKLELLKHIGRSFSVFRIDCGSCNGCEIEIFAAITPLWDPERFGFKL 64
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
A+PR +D+++ G +T +M L R Y+ P+P+ V+++G+C GG ++ +YSV+ G
Sbjct: 65 VANPRHADILLCTGPVTRQMYYPLLRAYEATPDPKIVVALGACGATGGIFYDAYSVLSGI 124
Query: 147 DRIVPVDIYVPGCPPTAEALIYGI 170
D+I+PVD+Y+PGCPP ++IYG+
Sbjct: 125 DKIIPVDVYIPGCPPHPASIIYGL 148
>gi|307265396|ref|ZP_07546952.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter wiegelii
Rt8.B1]
gi|306919510|gb|EFN49728.1| NADH-quinone oxidoreductase, B subunit [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 198
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 83/137 (60%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+D L+ + R S+ + + C AVE+ + R+D+ERFG P A+PRQ+DV++V G +
Sbjct: 13 IDNLIDFFRKRSIWILHYCTGCGAVELPPSMTSRWDIERFGIVPMATPRQADVLLVTGYV 72
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
+ K + ++Y+QMPEP++V++ GSC GG Y SY+ + +PVDI V GC P
Sbjct: 73 SLKTLKRIIKIYEQMPEPKWVLAFGSCTVNGGIYWDSYNTITNLAEYIPVDITVSGCMPR 132
Query: 163 AEALIYGILLLQKKIRR 179
EA+I + L + I+
Sbjct: 133 PEAVIDALQTLMEMIQS 149
>gi|283853893|ref|ZP_06371106.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B]
gi|283570716|gb|EFC18763.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio sp. FW1012B]
Length = 147
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 85/139 (61%), Gaps = 3/139 (2%)
Query: 43 VDQLVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ ++ R S + F C +E++ P YD+ERFG +P+ +DV++V
Sbjct: 2 LGNMINQGRIKSPWVVHFDCGSCNGCDIEVLACLTPLYDIERFGIINVGNPKHADVLLVT 61
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GT+ ++ L+ +YDQMP P+ VI++G+C GG + +Y+VV G D+++PVD+YVPGC
Sbjct: 62 GTVNHRNKHVLKNIYDQMPGPKAVIAIGACGCTGGVFREAYNVVGGVDKVIPVDVYVPGC 121
Query: 160 PPTAEALIYGILLLQKKIR 178
P EA+I G++ +K++
Sbjct: 122 PARPEAIIDGVVAALEKVK 140
>gi|187251539|ref|YP_001876021.1| NiFe-hydrogenase III small subunit [Elusimicrobium minutum Pei191]
gi|186971699|gb|ACC98684.1| NiFe-hydrogenase III small subunit [Elusimicrobium minutum Pei191]
Length = 149
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 55/134 (41%), Positives = 84/134 (62%), Gaps = 3/134 (2%)
Query: 44 DQLVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+Q+V WAR S + + C +E + A P++D+ERFG +PR +DVM+V+G
Sbjct: 6 EQVVAWARRKSPWILHYNSGSCNGCDIETVAALTPKFDVERFGILQHGTPRHADVMVVSG 65
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
++ + L R+Y+QM EP++V+++G+CA GG Y V+ G D+I+PV Y+PGCP
Sbjct: 66 AVSRQQEKRLLRIYNQMAEPKFVVAVGACACSGGVLQGCYGVLGGVDKILPVSAYIPGCP 125
Query: 161 PTAEALIYGILLLQ 174
P EALI GI+ L
Sbjct: 126 PRPEALIDGIVKLL 139
>gi|14591239|ref|NP_143316.1| NADH dehydrogenase subunit B [Pyrococcus horikoshii OT3]
gi|3257873|dbj|BAA30556.1| 195aa long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii OT3]
Length = 195
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 75/137 (54%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ L WAR SL + F C +EM RYD+ERFG SPRQ D+ ++ G +
Sbjct: 10 FEPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDIERFGMLSDPSPRQYDLFLITGYV 69
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T K + Y+ P+P+YV++ GSC GG Y SY+ V+ D+ +PVD+++ GC P
Sbjct: 70 TPKTLKRIIITYELSPDPKYVLAHGSCPINGGVYWDSYNTVKHLDKYIPVDVFIAGCMPR 129
Query: 163 AEALIYGILLLQKKIRR 179
EA++ GI L I
Sbjct: 130 PEAVMDGIYKLMDMIES 146
>gi|284042616|ref|YP_003392956.1| NADH-quinone oxidoreductase, B subunit [Conexibacter woesei DSM
14684]
gi|283946837|gb|ADB49581.1| NADH-quinone oxidoreductase, B subunit [Conexibacter woesei DSM
14684]
Length = 229
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 70/155 (45%), Positives = 104/155 (67%), Gaps = 3/155 (1%)
Query: 24 ADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFG 83
R + + L T++D++ WAR S+ TFGLACCA+EMM R D+ RFG
Sbjct: 34 DLTDRELEQYVEERVLTTTLDKVTAWARGNSMFPATFGLACCAIEMMSLPGARLDIGRFG 93
Query: 84 FA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
F RASPRQ+D++I++G ++ KMA +RR+YDQM EPR+ ISMG+C + G ++ +Y++
Sbjct: 94 FEAFRASPRQADMLILSGRVSIKMAPIVRRIYDQMLEPRWAISMGACCSSMGVFN-NYAL 152
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
V D+ +P+D++VPGCPP EAL + IL L+ K+
Sbjct: 153 V-PADKFMPIDVHVPGCPPRPEALAHAILKLRSKV 186
>gi|149194128|ref|ZP_01871226.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Caminibacter
mediatlanticus TB-2]
gi|149136081|gb|EDM24559.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Caminibacter
mediatlanticus TB-2]
Length = 280
Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 5/156 (3%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPR 87
+ +I L + L R+ S+ + C +E+ A P +D ERFGF
Sbjct: 9 LDKDIFDNNSLEDKLRLLKDIKRSFSVFRVDCGSCNGCEIEIFAAITPMWDPERFGFKLV 68
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
ASPR +D+++ G LT +M L R Y+ P+P+ VI++G+C GG +H SY+V G D
Sbjct: 69 ASPRHADILLCTGPLTRQMYYPLLRAYEATPDPKVVIAVGACGCTGGIFHDSYAVWSGID 128
Query: 148 RIVPVDIYVPGCPPTAEALIYGILL----LQKKIRR 179
+PVD+Y+PGCPP +I+G+ + L +K+++
Sbjct: 129 STLPVDVYIPGCPPHPATIIHGLAVALGILDQKMKK 164
>gi|303248163|ref|ZP_07334427.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
fructosovorans JJ]
gi|302490427|gb|EFL50336.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
fructosovorans JJ]
Length = 147
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 84/139 (60%), Gaps = 3/139 (2%)
Query: 43 VDQLVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ ++ R S + F C +E++ P YD+ERFG +P+ +DV++V
Sbjct: 2 LSNMINKGRIKSPWVVHFDCGSCNGCDIEVLACLTPLYDIERFGIVNVGNPKHADVLLVT 61
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GT+ + L+ +YDQMP P+ VI++G+C GG + +Y+VV G D+++PVD+YVPGC
Sbjct: 62 GTVNQRNKHVLKNIYDQMPGPKAVIAIGACGCTGGVFREAYNVVGGVDKVIPVDVYVPGC 121
Query: 160 PPTAEALIYGILLLQKKIR 178
P EA+I G++ +K++
Sbjct: 122 PARPEAIIDGVVAALEKVK 140
>gi|332157678|ref|YP_004422957.1| NADH dehydrogenase subunit B [Pyrococcus sp. NA2]
gi|331033141|gb|AEC50953.1| NADH dehydrogenase subunit B [Pyrococcus sp. NA2]
Length = 192
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 77/137 (56%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ L WAR SL + F C +EM RYD+ERFG P SPRQ D+ ++ G +
Sbjct: 7 FEPLFNWARKKSLWIVAFCTGCGGIEMPPLMTARYDIERFGIMPDPSPRQYDLFLITGYV 66
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T K + Y+ P+P+YV++ GSC GG Y SY+ ++ D+ +PVD+++ GC P
Sbjct: 67 TPKTLKRIIITYELSPDPKYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPR 126
Query: 163 AEALIYGILLLQKKIRR 179
EA++ GI L + I
Sbjct: 127 PEAVMDGIYKLMEMIEN 143
>gi|118579032|ref|YP_900282.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
2379]
gi|118501742|gb|ABK98224.1| ech hydrogenase subunit C [Pelobacter propionicus DSM 2379]
Length = 164
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 88/145 (60%), Gaps = 3/145 (2%)
Query: 43 VDQLVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+D++V WAR S + + C +E++ P +D+ERFG + +PR +DV++ +
Sbjct: 4 IDRIVNWARIKSPWVIHYNTGACNGCDIEIVATLTPVFDIERFGCQLKGTPRHADVLLCS 63
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
G +T + + R+Y+QMPEP++V+++GSCA GG + Y+++ G D ++PV YVPGC
Sbjct: 64 GPVTRQSRDRIIRIYEQMPEPKFVVAVGSCACSGGVFQGCYNILGGIDSVIPVSAYVPGC 123
Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
EA+I G++ L + R V+
Sbjct: 124 AARPEAIIDGVVKLLTTLERKKAVE 148
>gi|254166707|ref|ZP_04873561.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
boonei T469]
gi|254167366|ref|ZP_04874218.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
boonei T469]
gi|289596350|ref|YP_003483046.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei
T469]
gi|197623629|gb|EDY36192.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
boonei T469]
gi|197624317|gb|EDY36878.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
boonei T469]
gi|289534137|gb|ADD08484.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei
T469]
Length = 146
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 3/135 (2%)
Query: 53 GSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
SL C +E++ A PRYD+ERFG SPR +D ++V G +T M
Sbjct: 11 RSLWVFHVNTGSCNGCDIEILAALTPRYDVERFGIKLVGSPRHADALLVTGPVTRDMEDK 70
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
++R Y+Q+P+P+ VI +GSC GG +H SY++V D+++PVD+YVPGCPP EA+I G
Sbjct: 71 VKRFYEQVPDPKVVIVIGSCGISGGVFHESYNLVGPVDKVIPVDVYVPGCPPRPEAIIDG 130
Query: 170 ILLLQKKIRRVGNVK 184
++ K+ R+ K
Sbjct: 131 VVKAWMKLERLRREK 145
>gi|332796230|ref|YP_004457730.1| NADH-quinone oxidoreductase subunit B [Acidianus hospitalis W1]
gi|332693965|gb|AEE93432.1| NADH-quinone oxidoreductase, B subunit [Acidianus hospitalis W1]
Length = 170
Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 64/144 (44%), Positives = 90/144 (62%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
+ L W SL F +CC E + R+D ERFG P +S RQS+++++ G
Sbjct: 26 KPIRDLRDWGTAFSLWPPHFTTSCCGAEFGAFAAARFDAERFGMLPFSSSRQSNILVIEG 85
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
T+T KMA A R VY+QMPEP+YV+++G+C+ GG + SY+ V + +PVDIYVPGCP
Sbjct: 86 TMTRKMARAARIVYEQMPEPKYVMAIGACSLEGGIFWNSYNTVLPSEVGIPVDIYVPGCP 145
Query: 161 PTAEALIYGILLLQKKIRRVGNVK 184
EA+ G+L+LQKKIR +K
Sbjct: 146 IRPEAIARGLLMLQKKIRHQSTIK 169
>gi|34558135|ref|NP_907950.1| hydrogenase-Ni,Fe-hydrogenase III small subunit [Wolinella
succinogenes DSM 1740]
gi|34483853|emb|CAE10850.1| HYDROGENASE-Ni,Fe-hydrogenase III small subunit [Wolinella
succinogenes]
Length = 276
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 93/159 (58%), Gaps = 5/159 (3%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGF 84
+ EI + ++ L R+ S+ + C +E+ A P +D ERFGF
Sbjct: 3 IYDMPEEIKVANEIEQKLELLKHIGRSFSVYRIDCGSCNGCEIEIFAAITPLWDPERFGF 62
Query: 85 APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
A+PR +D+++ G +T +M L R Y+ P+P+ V+++G+C + GG ++ +YSV+
Sbjct: 63 KLVANPRHADILLCTGPVTRQMYYPLLRAYEAAPDPKLVVALGACGSTGGIFYDAYSVLS 122
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIRR 179
G D+I+PVD+Y+PGCPP ++IYG+ +++K++R
Sbjct: 123 GIDKIIPVDVYIPGCPPHPASIIYGLTTALGVMEQKLQR 161
>gi|171186236|ref|YP_001795155.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus
V24Sta]
gi|170935448|gb|ACB40709.1| NADH-quinone oxidoreductase, B subunit [Thermoproteus neutrophilus
V24Sta]
Length = 147
Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats.
Identities = 62/148 (41%), Positives = 90/148 (60%), Gaps = 1/148 (0%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KG + +V ++ W SL ACC VE A YD ERFG P S RQS+
Sbjct: 1 MKGAISQAVSRVARWGTKWSLWPPHLVTACCGVEFAHAFGSAYDAERFGMLPMGSLRQSN 60
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
++I+ GT+T KMA ++ +YDQMPEP+YVI+MG+CA GG ++ SY +V ++VPV
Sbjct: 61 ILILEGTITLKMAKFVKYIYDQMPEPKYVIAMGACAIKGGVFYGSYHMV-PASKVVPVHA 119
Query: 155 YVPGCPPTAEALIYGILLLQKKIRRVGN 182
Y+ GCPPT EA++ + +Q++I +
Sbjct: 120 YISGCPPTPEAVLKAVEKVQERISHAES 147
>gi|297569884|ref|YP_003691228.1| NADH-quinone oxidoreductase, B subunit [Desulfurivibrio
alkaliphilus AHT2]
gi|296925799|gb|ADH86609.1| NADH-quinone oxidoreductase, B subunit [Desulfurivibrio
alkaliphilus AHT2]
Length = 177
Score = 170 bits (431), Expect = 8e-41, Method: Composition-based stats.
Identities = 67/146 (45%), Positives = 93/146 (63%), Gaps = 3/146 (2%)
Query: 21 KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
K+ + + +D+L+ R SL MTFGLACCA+EMM R+DL+
Sbjct: 3 KLPNHSEQRPQDDHPPVVQFAVLDKLLNLGRANSLWPMTFGLACCAIEMMATGASRFDLD 62
Query: 81 RFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--H 137
RFG R +P+QSDVMIVAGT++ KMA A+ +Y+QMP P++VI+MG+CA GG +
Sbjct: 63 RFGAGVFRPAPKQSDVMIVAGTISKKMAPAIVTLYEQMPHPKWVIAMGNCAISGGPFVFE 122
Query: 138 YSYSVVRGCDRIVPVDIYVPGCPPTA 163
Y +V G D+I+PVD+Y+PGCPP
Sbjct: 123 GQYGIVEGADKILPVDVYIPGCPPRP 148
>gi|257437224|gb|ACV53599.1| NADH ubiqionone oxidoreductase chain B [Agrobacterium sp. ATCC
31749]
Length = 121
Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats.
Identities = 108/121 (89%), Positives = 115/121 (95%), Gaps = 1/121 (0%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVE-MMQASMPRYDLERFGFAPRASPRQSDVMIV 98
VTS D+L+TWARTGSLMWM FGLACCAVE +MQAS PRYD+ERFG APRASPRQSDVMIV
Sbjct: 1 VTSTDELITWARTGSLMWMQFGLACCAVEGLMQASGPRYDMERFGVAPRASPRQSDVMIV 60
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
AGTLTNKMA ALR+VYDQMPEPRYVISMGSCANGGGYYHYSY+VVRGCDR+VPVDIYVPG
Sbjct: 61 AGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYAVVRGCDRVVPVDIYVPG 120
Query: 159 C 159
C
Sbjct: 121 C 121
>gi|240102769|ref|YP_002959078.1| NADH dehydrogenase subunit B [Thermococcus gammatolerans EJ3]
gi|239910323|gb|ACS33214.1| membrane bound oxidoreductase, MbxJ subunit (MbxJ) [Thermococcus
gammatolerans EJ3]
Length = 194
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 6/152 (3%)
Query: 34 THKGFLV------TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
GF+ + L WAR SL + F C +EM + RYD ERFG P
Sbjct: 3 EKDGFISYELQEFKLFEPLFRWARKKSLWIVAFCTGCGGIEMPPLATARYDFERFGIMPN 62
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
+PR +D+ ++ G +T K + Y+ M +P+YV++ GSC GG Y SY+VV+ D
Sbjct: 63 PAPRMADLFLITGYVTPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLD 122
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+ +P+D+ + GC P EA++ GI+ + +KI
Sbjct: 123 KYIPIDVAIAGCMPRPEAVMDGIMEIMRKIEN 154
>gi|119871844|ref|YP_929851.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM
4184]
gi|119673252|gb|ABL87508.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM
4184]
Length = 147
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 63/143 (44%), Positives = 91/143 (63%), Gaps = 1/143 (0%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
+G + +V ++ W SL ACC VE P YD ERFG P S RQS+
Sbjct: 1 MRGAISQAVSRVARWGTKWSLWPPHLVTACCGVEFAHTFGPAYDAERFGMLPIGSLRQSN 60
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
++I+ GT+T KMA ++ +YDQMPEP+YVI+MG+CA GG ++ SY +V ++VPV++
Sbjct: 61 ILILEGTITLKMAKFVKYIYDQMPEPKYVIAMGACAIKGGVFYGSYHMV-PASKVVPVNV 119
Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
YV GCPPT EA++ + +QK+I
Sbjct: 120 YVSGCPPTPEAVLKAVEKIQKQI 142
>gi|66219963|gb|AAY42996.1| Nqo6 [Rhodothermus marinus]
Length = 169
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 69/129 (53%), Positives = 96/129 (74%), Gaps = 2/129 (1%)
Query: 56 MWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVY 114
M M GLACCA+EMM + P+YD+ RFG R SPRQ+D+MIVAG + KMA A+RRV+
Sbjct: 1 MPMPMGLACCAIEMMAFAGPKYDVARFGSEAMRFSPRQADLMIVAGWCSYKMAHAIRRVW 60
Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
DQMP+P++ I+MG+CA+ GG H Y VV+G D +PVD+Y+PGCPP EA+++ ++ +Q
Sbjct: 61 DQMPDPKWCIAMGACASTGGM-HRCYGVVQGVDNFLPVDVYIPGCPPRPEAVLHALMDIQ 119
Query: 175 KKIRRVGNV 183
+KIR +V
Sbjct: 120 EKIRNEYSV 128
>gi|319789460|ref|YP_004151093.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermovibrio
ammonificans HB-1]
gi|317113962|gb|ADU96452.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermovibrio
ammonificans HB-1]
Length = 177
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 81/135 (60%), Gaps = 3/135 (2%)
Query: 51 RTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R S + + C +E++ P+YDLERFG R +P+QSDV+IV G +T +
Sbjct: 7 RKKSPWLLHYNTGSCNGCDIEILACLAPKYDLERFGILNRGNPKQSDVLIVTGPVTKRAK 66
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
L R+Y +MPEP+ V+++G+CA GG + + Y+V G D ++PVD+YVPGC E++I
Sbjct: 67 ERLLRLYYEMPEPKVVVAVGACACTGGVFRHMYNVENGVDSVIPVDVYVPGCAARPESII 126
Query: 168 YGILLLQKKIRRVGN 182
G++ + + R
Sbjct: 127 DGVIKALEILERKKK 141
>gi|57641152|ref|YP_183630.1| NADH dehydrogenase subunit B [Thermococcus kodakarensis KOD1]
gi|57159476|dbj|BAD85406.1| membrane bound hydrogenase, NiFe-hydrogenase small subunit
[Thermococcus kodakarensis KOD1]
Length = 193
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 79/137 (57%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ L WAR SL + F C +EM + RYD ERFG P +PR +D+ ++ G +
Sbjct: 17 FEPLFRWARKKSLWIVAFCTGCGGIEMPPLATARYDFERFGIMPNPAPRMADLFLITGYV 76
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T K + Y+ M +P+YV++ GSC GG Y SY+VV+ D+ +P+D+ + GC P
Sbjct: 77 TPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLDKYIPIDVAIAGCMPR 136
Query: 163 AEALIYGILLLQKKIRR 179
EA++ GI+ + +KI
Sbjct: 137 PEAVMDGIMEIMRKIEN 153
>gi|254168030|ref|ZP_04874878.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
boonei T469]
gi|254168134|ref|ZP_04874981.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
boonei T469]
gi|289596054|ref|YP_003482750.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei
T469]
gi|197622900|gb|EDY35468.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
boonei T469]
gi|197623073|gb|EDY35640.1| NADH-quinone oxidoreductase, B subunit subfamily [Aciduliprofundum
boonei T469]
gi|289533841|gb|ADD08188.1| NADH-quinone oxidoreductase, B subunit [Aciduliprofundum boonei
T469]
Length = 180
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 55/135 (40%), Positives = 80/135 (59%)
Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
++ SL + F C A+EM RYD+ERFG P A+PRQ+D+M+V G +
Sbjct: 17 KIQRMLSRRSLWMIHFCTGCGAMEMPPVMTSRYDMERFGIIPMATPRQADLMLVTGYVAT 76
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
K + RVY+QM +P+YVI+ GSC GG Y SY++++ D+ +PVD+Y+ GC P E
Sbjct: 77 KTLKRIVRVYEQMQDPKYVIAFGSCPINGGIYWDSYNIIKRLDKYIPVDLYIAGCMPRPE 136
Query: 165 ALIYGILLLQKKIRR 179
A++ L L K I
Sbjct: 137 AIMDAFLKLMKDIDE 151
>gi|303247493|ref|ZP_07333765.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio
fructosovorans JJ]
gi|302491189|gb|EFL51081.1| NADH-quinone oxidoreductase, B subunit [Desulfovibrio
fructosovorans JJ]
Length = 178
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 68/138 (49%), Positives = 99/138 (71%), Gaps = 3/138 (2%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA-PRASPRQSDVMIVAGT 101
V ++V R S+ MTFG+ACCA+EMM M R+D+ RFG R SPRQSD+MIVAGT
Sbjct: 27 VQKIVDVCRAMSIWPMTFGIACCAIEMMAVGMARFDIARFGAEVFRPSPRQSDLMIVAGT 86
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVDIYVPGC 159
+ K+A + R+++QMP PR+V+++G+CA GG ++ Y+VV+G D ++PVD+YVPGC
Sbjct: 87 VNKKLAPLVVRLFEQMPAPRFVMALGNCAISGGPFNIEGQYNVVQGVDTLIPVDVYVPGC 146
Query: 160 PPTAEALIYGILLLQKKI 177
PP E L+ G+ +Q+K+
Sbjct: 147 PPRPEGLLEGLFAIQQKM 164
>gi|317486369|ref|ZP_07945197.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6]
gi|316922358|gb|EFV43616.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6]
Length = 163
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 83/140 (59%), Gaps = 3/140 (2%)
Query: 42 SVDQLVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
++Q + R S + + C +E++ P +D+ERFG P+ +DV++V
Sbjct: 9 KLNQYINKGRLKSPWVVHYDCGSCNGCDIEVLACLTPVFDVERFGIVNIGDPKHADVLLV 68
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
GT+ + L+ +YDQMPEP+ VI++G+CA GG + Y+VV G D ++PVD+YVPG
Sbjct: 69 TGTVNQRNKDVLKNLYDQMPEPKAVIAIGACACTGGVFQDCYNVVGGVDHVIPVDVYVPG 128
Query: 159 CPPTAEALIYGILLLQKKIR 178
C EA+I G++L + ++
Sbjct: 129 CAAKPEAIIDGVVLALEVVK 148
>gi|322419366|ref|YP_004198589.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
gi|320125753|gb|ADW13313.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
Length = 164
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 87/143 (60%), Gaps = 3/143 (2%)
Query: 43 VDQLVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ +LV +R S + + C +E++ P YD+ERFG +P+ +DV++V
Sbjct: 2 LKKLVKTSRVKSPWLIHLDCSSCNGCDIEVLACLTPLYDVERFGILNVGNPKHADVLVVT 61
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GT+ ++ L +YDQMPEP+ V+++G+C GG + S++VV G DR+VPVD YVPGC
Sbjct: 62 GTVNHRNRKVLENIYDQMPEPKVVVAVGACGCSGGVFRDSFNVVGGVDRVVPVDAYVPGC 121
Query: 160 PPTAEALIYGILLLQKKIRRVGN 182
P EA+I GI+L +K+ G
Sbjct: 122 APKPEAIIDGIVLALEKLAEKGK 144
>gi|222100331|ref|YP_002534899.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
gi|221572721|gb|ACM23533.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
Length = 178
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 83/139 (59%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
T +++ R+ S+ + + C AVE+ + R+D+ERFG AP A+PRQ+D++++ G
Sbjct: 5 TVWERIADALRSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITG 64
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
L K + Y+QMP+P+YV+ GSC GG Y SY+ V D +PVD+Y+ GC
Sbjct: 65 YLNTKTLRRVIYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCM 124
Query: 161 PTAEALIYGILLLQKKIRR 179
P EA++ L +KIR+
Sbjct: 125 PRPEAILEAFNYLMEKIRK 143
>gi|126465551|ref|YP_001040660.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1]
gi|126014374|gb|ABN69752.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus marinus F1]
Length = 179
Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 59/138 (42%), Positives = 80/138 (57%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
W R+ S+ + + AC A+E+ M D ER+G P SPRQ+DV+++ G +T K
Sbjct: 11 FAEWVRSRSIWMIHYCSACGAIELPPNMMAPLDAERWGIMPAPSPRQADVLVIMGYVTKK 70
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
L R+Y QMPEPRYV+ +C GG Y SYS V+ D +PVD++VPGC P AE
Sbjct: 71 TLKVLMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTVKAVDEFLPVDVWVPGCMPRAED 130
Query: 166 LIYGILLLQKKIRRVGNV 183
+ G L L+KKI V
Sbjct: 131 WLQGFLKLRKKISEGRIV 148
>gi|297616846|ref|YP_003702005.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
12680]
gi|297144683|gb|ADI01440.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
12680]
Length = 165
Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 57/142 (40%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 46 LVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
LV AR+ S M F C++E+ P YDLERFG +P+ +DV++V GT+
Sbjct: 3 LVHRARSKSPWVMHFDTAGCNGCSIEVFACFTPLYDLERFGIVNVGNPKHADVLLVTGTV 62
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
+K L+ VYDQM P+ ++++G CA G +H SY+ + G D++VPVD+YVPGC
Sbjct: 63 NHKAKRVLKTVYDQMNHPKVIVAVGICATSGNVFHQSYNCLGGVDKVVPVDVYVPGCAAR 122
Query: 163 AEALIYGILLLQKKIRRVGNVK 184
E +I GI L KK+ K
Sbjct: 123 PEVIIDGIFLALKKLEEKRRDK 144
>gi|50555305|ref|XP_505061.1| YALI0F06050p [Yarrowia lipolytica]
gi|49650931|emb|CAG77868.1| YALI0F06050p [Yarrowia lipolytica]
Length = 216
Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 91/143 (63%), Positives = 106/143 (74%), Gaps = 2/143 (1%)
Query: 12 SGQSSCSLEKVDADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
+G S + DF S + + + +T++D + WAR GS +TFGLACCAVEM
Sbjct: 31 AGTPRVSSSSMPTDFPLPSQQKPNSAVDYTLTTLDAVANWARQGSFWPVTFGLACCAVEM 90
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
M S PRYD +R G RASPRQSD+MIVAGTLTNKMA LR+VYDQMPEPR+VISMGSC
Sbjct: 91 MHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVISMGSC 150
Query: 130 ANGGGYYHYSYSVVRGCDRIVPV 152
ANGGGYYH+SYSVVRGCDRIVPV
Sbjct: 151 ANGGGYYHFSYSVVRGCDRIVPV 173
>gi|15643970|ref|NP_229019.1| NADH dehydrogenase subunit B [Thermotoga maritima MSB8]
gi|4981767|gb|AAD36289.1|AE001778_10 NADH dehydrogenase, putative [Thermotoga maritima MSB8]
Length = 178
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 52/129 (40%), Positives = 79/129 (61%)
Query: 51 RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
R+ S+ + + C AVE+ + R+D+ERFG AP A+PRQ+D++++ G L K +
Sbjct: 15 RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITGYLNTKTLRRV 74
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
Y+QMP+P+YV+ GSC GG Y SY+ V D +PVD+Y+ GC P EA++
Sbjct: 75 IYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCMPRPEAILEAF 134
Query: 171 LLLQKKIRR 179
L +KIR+
Sbjct: 135 NYLMEKIRK 143
>gi|170289385|ref|YP_001739623.1| NADH-quinone oxidoreductase, B subunit [Thermotoga sp. RQ2]
gi|170176888|gb|ACB09940.1| NADH-quinone oxidoreductase, B subunit [Thermotoga sp. RQ2]
Length = 178
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 52/129 (40%), Positives = 79/129 (61%)
Query: 51 RTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
R+ S+ + + C AVE+ + R+D+ERFG AP A+PRQ+D++++ G L K +
Sbjct: 15 RSRSIWMLHYCTGCGAVELPPSMTSRFDMERFGIAPMATPRQADILLITGYLNTKTLRRV 74
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
Y+QMP+P+YV+ GSC GG Y SY+ V D +PVD+Y+ GC P EA++
Sbjct: 75 IYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIPVDVYIAGCMPRPEAILEAF 134
Query: 171 LLLQKKIRR 179
L +KIR+
Sbjct: 135 NYLMEKIRK 143
>gi|240102096|ref|YP_002958404.1| membrane bound hydrogenase, MbhJ subunit (MbhJ) [Thermococcus
gammatolerans EJ3]
gi|239909649|gb|ACS32540.1| membrane bound hydrogenase, MbhJ subunit (MbhJ) [Thermococcus
gammatolerans EJ3]
Length = 174
Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRA 88
S + + L + QL + ++ +C C +E++ PRYD ERFG
Sbjct: 11 SNSSERERLEKRIAQLCRYIGRSPWVFHVNTGSCNGCDIEIIAILTPRYDAERFGVKLVG 70
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPR +D+++V G +TN+ ++ VY+Q P+P+ V+++G+CA GGG ++ S
Sbjct: 71 SPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVVAVGACATGGGVFYESPFTNAPLSN 130
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
++PVD+YVPGCPP EA+++G++L +K+ +
Sbjct: 131 VIPVDVYVPGCPPRPEAILHGVVLALEKLAK 161
>gi|254171859|ref|ZP_04878535.1| NADH dehydrogenase beta subunit [Thermococcus sp. AM4]
gi|214033755|gb|EEB74581.1| NADH dehydrogenase beta subunit [Thermococcus sp. AM4]
Length = 194
Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 6/151 (3%)
Query: 34 THKGFLV------TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPR 87
+ GF+ + L WAR SL + F C +EM RYDLERFG P
Sbjct: 3 ENDGFISYELQEFKLFEPLFRWARKKSLWIVAFCTGCGGIEMPPLFTARYDLERFGMMPN 62
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
+PR +D+ ++ G +T K + Y+ M +P+YV++ GSC GG Y SY+VV+ D
Sbjct: 63 PAPRMADLFLITGYVTPKTLKRIIITYEMMQDPKYVLAHGSCPINGGVYWDSYNVVKQLD 122
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+ +P+D+ + GC P EA++ GI + +KI
Sbjct: 123 KYIPIDVAIAGCMPRPEAVMDGIREIMRKIE 153
>gi|296242362|ref|YP_003649849.1| NADH-quinone oxidoreductase subunit B [Thermosphaera aggregans DSM
11486]
gi|296094946|gb|ADG90897.1| NADH-quinone oxidoreductase, B subunit [Thermosphaera aggregans DSM
11486]
Length = 155
Score = 168 bits (425), Expect = 4e-40, Method: Composition-based stats.
Identities = 57/133 (42%), Positives = 81/133 (60%), Gaps = 3/133 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + F C +E++ + P YD ERFG S R D+++V G LT K
Sbjct: 19 RYSPWLVHFNTGACNGCDIEVLASITPLYDPERFGVKLAPSIRHGDILVVTGALTKKAGE 78
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
LRR+YDQMP P++V+++G+CA GG ++ SYSV G D+ VPV +Y+PGCPP EA++
Sbjct: 79 RLRRLYDQMPNPKFVVAVGACAVDGGVFYKSYSVEGGADKAVPVAMYIPGCPPRPEAILD 138
Query: 169 GILLLQKKIRRVG 181
GI+ L KK+ G
Sbjct: 139 GIVKLLKKLEESG 151
>gi|14591227|ref|NP_143304.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus horikoshii OT3]
gi|3257858|dbj|BAA30541.1| 173aa long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii OT3]
Length = 173
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 90/152 (59%), Gaps = 2/152 (1%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPR 87
+ + + L + QL + ++ +C C +E++ A PRYD ERFG
Sbjct: 9 AQQNEERKRLEKRIAQLCKFIGKSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLV 68
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
SPR +D+++V G +TN+ ++ VY+Q P+P+ VI++GSCA GG ++ S D
Sbjct: 69 GSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVIAVGSCATGGSVFYESPFTNAPLD 128
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
++PVD++VPGCPP EA++YG++L +K+ +
Sbjct: 129 NVIPVDVFVPGCPPRPEAILYGVVLALEKLAK 160
>gi|46578848|ref|YP_009656.1| ech hydrogenase subunit EchC [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603546|ref|YP_967946.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio
vulgaris DP4]
gi|46448260|gb|AAS94915.1| Ech hydrogenase, subunit EchC, putative [Desulfovibrio vulgaris
str. Hildenborough]
gi|120563775|gb|ABM29519.1| ech hydrogenase subunit C [Desulfovibrio vulgaris DP4]
gi|311232712|gb|ADP85566.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
vulgaris RCH1]
Length = 157
Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 84/141 (59%), Gaps = 3/141 (2%)
Query: 43 VDQLVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ + R S + F C +E++ P +D+ERFG +P+ +DV++V
Sbjct: 4 IKDWINKGRLKSPWVVHFDCGSCNGCDIEVLACLTPVFDVERFGIINVGNPKHADVLLVT 63
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GT+ ++ L+ +YDQMP+P+ VI++G+C + GG + Y+VV G D+++PVD+YVPGC
Sbjct: 64 GTVNHRNKKVLKNIYDQMPDPKAVIAIGACGSSGGVFRECYNVVGGVDQVIPVDVYVPGC 123
Query: 160 PPTAEALIYGILLLQKKIRRV 180
P EA+I G++ + ++
Sbjct: 124 PAKPEAIIDGVVTALEVVKAK 144
>gi|325969611|ref|YP_004245803.1| NADH-quinone oxidoreductase subunits B and C [Vulcanisaeta
moutnovskia 768-28]
gi|323708814|gb|ADY02301.1| NADH-quinone oxidoreductase subunits B and C [Vulcanisaeta
moutnovskia 768-28]
Length = 419
Score = 167 bits (422), Expect = 9e-40, Method: Composition-based stats.
Identities = 63/140 (45%), Positives = 86/140 (61%), Gaps = 1/140 (0%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
L ++ W SL + ACC VEM P YD ER G P SPRQ+++++V
Sbjct: 3 LDKYLEPYKKWGTKYSLWPVHLVTACCGVEMAHTWNPTYDAERLGSLPWHSPRQTNLILV 62
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
GT++ KMA LR +++QM +P+YVI+MGSCA GG + SY V ++IVPVD Y G
Sbjct: 63 EGTISFKMARVLRYIWEQMSDPKYVIAMGSCAAEGGVFWNSYHAV-PVNKIVPVDAYAIG 121
Query: 159 CPPTAEALIYGILLLQKKIR 178
CPPT EA+I I ++Q+KI
Sbjct: 122 CPPTPEAVIQMIRIVQRKIE 141
>gi|118581926|ref|YP_903176.1| NADH-quinone oxidoreductase subunit B [Pelobacter propionicus DSM
2379]
gi|118504636|gb|ABL01119.1| NADH-quinone oxidoreductase, B subunit [Pelobacter propionicus DSM
2379]
Length = 144
Score = 167 bits (422), Expect = 9e-40, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 89/142 (62%), Gaps = 3/142 (2%)
Query: 40 VTSVDQLVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
+ ++D+LVTWAR S + F C +E++ + PR+DLERFG + +PR +DV+
Sbjct: 1 MKALDKLVTWARIKSPWVIHFNTGACNGCDIEIVDSLTPRFDLERFGIQLKGTPRHADVL 60
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
+ +G +T + L R+Y+QM +P++VI++G+CA G + Y+V+ G D ++PV Y+
Sbjct: 61 LCSGPVTRQTKDRLLRIYEQMADPKFVIAVGTCACSAGVFQGCYNVLGGTDTVLPVSAYI 120
Query: 157 PGCPPTAEALIYGILLLQKKIR 178
PGC EA+I G++ L ++
Sbjct: 121 PGCAARPEAIIDGVVKLLSTLK 142
>gi|327310885|ref|YP_004337782.1| NADH-quinone oxidoreductase subunits B and D [Thermoproteus
uzoniensis 768-20]
gi|326947364|gb|AEA12470.1| NADH-quinone oxidoreductase subunits B and D [Thermoproteus
uzoniensis 768-20]
Length = 561
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 58/129 (44%), Positives = 81/129 (62%), Gaps = 1/129 (0%)
Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
W SL ACC VE+ A P YD ER G P S R S+++I+ GT+T KMA
Sbjct: 16 WGTKWSLWPPHLVTACCGVELAHAFGPAYDAERLGVLPMPSARHSNLLIIEGTITLKMAK 75
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
++ VY+QMPEP+YV++MG+CA GG ++ SY +V +V VD+YV GCPPT EAL+
Sbjct: 76 FVKWVYEQMPEPKYVVAMGACAIKGGVFYGSYHMV-PASNVVGVDVYVSGCPPTPEALLK 134
Query: 169 GILLLQKKI 177
+ +Q+ +
Sbjct: 135 AVEKVQENV 143
>gi|317154076|ref|YP_004122124.1| NADH dehydrogenase (quinone) [Desulfovibrio aespoeensis Aspo-2]
gi|316944327|gb|ADU63378.1| NADH dehydrogenase (quinone) [Desulfovibrio aespoeensis Aspo-2]
Length = 147
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 52/125 (41%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Query: 50 ARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
+R S M F C +E++ P YD+ERFG +P+ +DV++V GT+ ++
Sbjct: 9 SRAKSPWIMHFDCGSCNGCDIEVLACLTPLYDVERFGIINVGNPKHADVLLVTGTVNHRN 68
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
L+ +YDQMPEP+ VI++G+C N GG + +Y+VV G D+++PVD+YVPGCP EA+
Sbjct: 69 KKVLKNIYDQMPEPKAVIAIGACGNTGGVFRDAYNVVGGVDKVIPVDVYVPGCPAKPEAI 128
Query: 167 IYGIL 171
I G++
Sbjct: 129 IDGVV 133
>gi|242399265|ref|YP_002994689.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2J (hydrogenase
subunit) [Thermococcus sibiricus MM 739]
gi|242265658|gb|ACS90340.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2J (hydrogenase
subunit) [Thermococcus sibiricus MM 739]
Length = 148
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 54/138 (39%), Positives = 82/138 (59%), Gaps = 5/138 (3%)
Query: 45 QLVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
+L ++ R SL C +E++ A PRYD ERFG SPR +DV++V G
Sbjct: 3 KLTSFKR--SLWVFHASGGSCNACDIEIIAALTPRYDAERFGIKLVGSPRHADVLLVTGA 60
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+ A LRR+Y+QMP+P+ VI +G+C GG ++ SY++ D I+PVD+YVPGCPP
Sbjct: 61 IPKDFADKLRRIYEQMPDPKAVIVIGNCGTSGGVFYDSYNIAGPIDEIIPVDVYVPGCPP 120
Query: 162 TAEALIYGILLLQKKIRR 179
EA++ ++ K+ +
Sbjct: 121 RPEAIVDAVVKAWLKLEK 138
>gi|297526163|ref|YP_003668187.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus hellenicus
DSM 12710]
gi|297255079|gb|ADI31288.1| NADH-quinone oxidoreductase, B subunit [Staphylothermus hellenicus
DSM 12710]
Length = 179
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 57/138 (41%), Positives = 79/138 (57%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
W R+ S+ + + AC A+E+ + D ER+G SPRQ+DV++V G +T K
Sbjct: 11 FAEWVRSRSIWMIHYCTACGAIELPPNIVAPLDAERWGIMAAPSPRQADVLVVMGYVTKK 70
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
L R+Y QMPEPRYV+ +C GG Y SYS ++ D +PVD++VPGC P AE
Sbjct: 71 TLKILMRLYHQMPEPRYVMVGCNCPATGGLYWDSYSTIKAVDEFLPVDVWVPGCMPRAED 130
Query: 166 LIYGILLLQKKIRRVGNV 183
+ G L L+KKI V
Sbjct: 131 WLQGFLRLRKKISEGRIV 148
>gi|320101012|ref|YP_004176604.1| NADH-quinone oxidoreductase subunit B [Desulfurococcus mucosus DSM
2162]
gi|319753364|gb|ADV65122.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus mucosus DSM
2162]
Length = 161
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/130 (40%), Positives = 81/130 (62%), Gaps = 3/130 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + F C +E++ A P YD ERFG S R D+++V G +T K
Sbjct: 19 RYSPWLVHFNTGACNGCDIEVLAAITPLYDPERFGVRLAPSIRHGDILVVTGAVTKKSGE 78
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+R+Y+QMP P++VI++G+CA GG + SY+V+ G D++VPV +Y+PGCPP EA++
Sbjct: 79 RLKRLYEQMPCPKFVIAVGACACSGGVFSKSYTVLAGADKVVPVSMYIPGCPPRPEAILD 138
Query: 169 GILLLQKKIR 178
GI+ L K++
Sbjct: 139 GIVKLLKRVE 148
>gi|14520931|ref|NP_126406.1| CO-induced hydrogenase related, subunit L [Pyrococcus abyssi GE5]
gi|5458148|emb|CAB49637.1| NADH ubiquinone oxidoreductase subunit [Pyrococcus abyssi GE5]
Length = 170
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Query: 28 RISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFA 85
++ ++ + L + QL + ++ +C C +E++ A PRYD ERFG
Sbjct: 4 KLPAQTEERKRLERRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVK 63
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
SPR +D+++V G +TN+ ++ VY+Q PEP+ VI++GSC GG ++ S
Sbjct: 64 LVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAP 123
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
DR++PVD++VPGCPP EA+++G++L +K+ +
Sbjct: 124 LDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
>gi|218886615|ref|YP_002435936.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|193479935|gb|ACF17988.1| EchC [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218757569|gb|ACL08468.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 157
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 83/141 (58%), Gaps = 3/141 (2%)
Query: 43 VDQLVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
++ + R S + F C +E++ P +D+ERFG +P+ +DV++V
Sbjct: 4 LENWINKGRLKSPWVVHFDCGSCNGCDIEVLACLTPVFDVERFGIINVGNPKHADVLLVT 63
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GT+ ++ L+ +YDQMP+P+ VI++G+C GG + Y+VV G D+++PVD+YVPGC
Sbjct: 64 GTVNHRNKKVLKNIYDQMPDPKAVIAIGACGTSGGVFRECYNVVGGVDQVIPVDVYVPGC 123
Query: 160 PPTAEALIYGILLLQKKIRRV 180
P +A+I G++ ++
Sbjct: 124 PAKPDAIIDGVVTALDVVKAK 144
>gi|307595389|ref|YP_003901706.1| NADH-quinone oxidoreductase subunit B [Vulcanisaeta distributa DSM
14429]
gi|307550590|gb|ADN50655.1| NADH-quinone oxidoreductase, B subunit [Vulcanisaeta distributa DSM
14429]
Length = 420
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 62/140 (44%), Positives = 87/140 (62%), Gaps = 1/140 (0%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV 98
L +++ W SL + ACC VEM P YD ER G P +PRQ+++++V
Sbjct: 3 LDKALEPYKKWGTKYSLWPVHLVTACCGVEMAHTWNPTYDAERLGSLPWHAPRQTNLILV 62
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
GT+T KMA LR V++QM +P+YVI+MGSCA GG + SY V ++I+P+D Y G
Sbjct: 63 EGTITFKMARVLRYVWEQMSDPKYVIAMGSCAAEGGIFWNSYHAV-PVNKIIPIDAYAIG 121
Query: 159 CPPTAEALIYGILLLQKKIR 178
CPPT EA+I I ++Q+KI
Sbjct: 122 CPPTPEAVIQMIKIVQRKIE 141
>gi|323700400|ref|ZP_08112312.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. ND132]
gi|323460332|gb|EGB16197.1| NADH dehydrogenase (quinone) [Desulfovibrio desulfuricans ND132]
Length = 147
Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 53/125 (42%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
Query: 50 ARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
+R S M F C +E++ P YD+ERFG +P+ +DV++V GT+ ++
Sbjct: 9 SRAKSPWIMHFDCGSCNGCDIEVLACLTPLYDVERFGIVHVGNPKHADVLLVTGTVNHRN 68
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
L+ +YDQMPEP+ VI++GSC N GG + +Y+VV G D+++PVD+YVPGCP EA+
Sbjct: 69 KKVLKNLYDQMPEPKAVIAIGSCGNTGGIFREAYNVVGGVDKVIPVDVYVPGCPAKPEAI 128
Query: 167 IYGIL 171
I G++
Sbjct: 129 IDGVV 133
>gi|254173172|ref|ZP_04879845.1| hydrogenase-4 component I [Thermococcus sp. AM4]
gi|214032581|gb|EEB73410.1| hydrogenase-4 component I [Thermococcus sp. AM4]
Length = 173
Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFG 83
+S + + L + QL + ++ +C C +E++ A PRYD ERFG
Sbjct: 5 VPANNSNSSERERLEKRIAQLCRYIGKSPWVFHVNTGSCNGCDIEIIAALTPRYDAERFG 64
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
SPR +D+++V G +TN+ ++ VY+Q PEP+ VI++GSC GG ++ S
Sbjct: 65 VKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAVGSCPTGGSVFYESPFTN 124
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
++PVD+YVPGCPP EA+++G++L +K+ +
Sbjct: 125 APLSNVIPVDVYVPGCPPRPEAILHGVVLALEKLAK 160
>gi|52549748|gb|AAU83597.1| F420H2-quinone oxidoreductase 45 kD subunit [uncultured archaeon
GZfos32E4]
Length = 788
Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 57/133 (42%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
L WA SL F +CC VE+ YD+ER G RQ++ ++V GT+T K
Sbjct: 21 LRRWATKWSLWPCHFLTSCCGVELAHTGACGYDMERLGTLNMGISRQANFIMVEGTITRK 80
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
MA ALR V++QMP+P++V +G+C GG + SY++ R D IVPVD ++PGCP T E+
Sbjct: 81 MARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRPSD-IVPVDFFIPGCPITPES 139
Query: 166 LIYGILLLQKKIR 178
L+ G+ +Q+KI
Sbjct: 140 LLRGVRAVQEKIE 152
>gi|52548540|gb|AAU82389.1| F420H2-quinone oxidoreductase 45 kD subunit [uncultured archaeon
GZfos17C7]
Length = 788
Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 57/133 (42%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
L WA SL F +CC VE+ YD+ER G RQ++ ++V GT+T K
Sbjct: 21 LRRWATKWSLWPCHFLTSCCGVELAHTGACGYDMERLGTLNMGISRQANFIMVEGTITRK 80
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
MA ALR V++QMP+P++V +G+C GG + SY++ R D IVPVD ++PGCP T E+
Sbjct: 81 MARALRIVWEQMPDPKFVNVIGTCGQRGGIFWNSYNITRPSD-IVPVDFFIPGCPITPES 139
Query: 166 LIYGILLLQKKIR 178
L+ G+ +Q+KI
Sbjct: 140 LLRGVRAVQEKIE 152
>gi|149194384|ref|ZP_01871481.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
oxidoreductase [Caminibacter mediatlanticus TB-2]
gi|149135559|gb|EDM24038.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
oxidoreductase [Caminibacter mediatlanticus TB-2]
Length = 164
Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 53/137 (38%), Positives = 83/137 (60%), Gaps = 6/137 (4%)
Query: 51 RTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R S + + C +E++ P+YD+ERFG R +P+QSD+++V G +T
Sbjct: 8 RKKSPWILHYNTGGCNGCDIEILATLAPKYDIERFGALNRGNPKQSDILLVTGPVTMHCK 67
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
LRR+Y +MPEP+ V++MG+C +GGG + + Y+V G D I+PVD+++PGC P EALI
Sbjct: 68 DVLRRLYLEMPEPKVVVAMGACGHGGGVFRHLYNVNDGVDSIIPVDVWIPGCCPRPEALI 127
Query: 168 YGILLLQ---KKIRRVG 181
GI+ +K +
Sbjct: 128 DGIVEAIAIWEKKSKEK 144
>gi|18977804|ref|NP_579161.1| mbh10 NADH dehydrogenase subunit [Pyrococcus furiosus DSM 3638]
gi|18893553|gb|AAL81556.1| mbh10 NADH dehydrogenase subunit (like cCoL, EchC, HycH)
[Pyrococcus furiosus DSM 3638]
Length = 167
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 89/148 (60%), Gaps = 2/148 (1%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPR 91
+ + L + QL + ++ +C C +E++ A PRYD ERFG SPR
Sbjct: 5 SERKRLEKRIAQLCKFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPR 64
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++V G +TN+ ++ VY+Q P+P+ VI++G+C GG ++ S DRI+P
Sbjct: 65 HADILLVTGPVTNQSLERVKLVYEQTPDPKIVIAIGACPTGGSVFYESPFTNAPLDRIIP 124
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179
VD++VPGCPP EA+++G++L +K+ +
Sbjct: 125 VDVFVPGCPPRPEAILHGVVLALEKLAK 152
>gi|315231237|ref|YP_004071673.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus
MP]
gi|315184265|gb|ADT84450.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP]
Length = 148
Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 5/131 (3%)
Query: 45 QLVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
+L + R SL C +E++ PRYD+ERFG SPR +DV++V G
Sbjct: 3 KLTNFKR--SLWVFHASGGSCNACDIEIVALLTPRYDVERFGIKLAGSPRHADVLLVTGA 60
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+ A LRR+Y+QMP+P+ VI +G+C GG ++ SY++ D I+PVD+YVPGCPP
Sbjct: 61 IPRDFADKLRRIYEQMPDPKAVIVVGNCGTSGGVFYDSYNIAGPIDEIIPVDVYVPGCPP 120
Query: 162 TAEALIYGILL 172
EA+I ++
Sbjct: 121 RPEAIIDAVVK 131
>gi|242280696|ref|YP_002992825.1| NADH dehydrogenase (quinone) [Desulfovibrio salexigens DSM 2638]
gi|242123590|gb|ACS81286.1| NADH dehydrogenase (quinone) [Desulfovibrio salexigens DSM 2638]
Length = 144
Score = 164 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 45 QLVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
+ + +R S M F C +E++ P YD+ERFG +P+ +DV++V GT
Sbjct: 4 KFIGNSRAKSPWIMHFDCGSCNGCDIEVLACLTPLYDVERFGVVNVGNPKHADVLLVTGT 63
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+ ++ A LR +YDQMP+P+ VI++G+C GG + Y+V+ G D+++PVD+YVPGCP
Sbjct: 64 VNHRNAKVLRNIYDQMPDPKGVIAIGACGLSGGVFRECYNVLGGVDKVIPVDVYVPGCPA 123
Query: 162 TAEALIYGILLLQKK 176
EA+I G++ K
Sbjct: 124 KPEAIIDGVVAALAK 138
>gi|239618414|ref|YP_002941736.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia
TBF 19.5.1]
gi|239507245|gb|ACR80732.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia
TBF 19.5.1]
Length = 179
Score = 164 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 78/136 (57%)
Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
+++ R SL + + C A+E+ R+D+ERFG P A+PRQ+D++++ G L+
Sbjct: 9 NKVANMLRARSLWMLYYCTGCGAIELPPTMTARFDMERFGIGPMATPRQADILLITGYLS 68
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
K + Y+QM P+YV+ GSC GG Y SY+ + D +PVD+Y+ GC P
Sbjct: 69 TKTLRRVIYTYEQMQAPKYVVGFGSCTINGGIYFDSYATINRLDLYLPVDLYLAGCMPRP 128
Query: 164 EALIYGILLLQKKIRR 179
EA++ G L KKI R
Sbjct: 129 EAIVNGFKELMKKIDR 144
>gi|218883730|ref|YP_002428112.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus
kamchatkensis 1221n]
gi|218765346|gb|ACL10745.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus
kamchatkensis 1221n]
Length = 160
Score = 164 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 56/131 (42%), Positives = 80/131 (61%), Gaps = 3/131 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + F C +E++ A P YD ERFG S R D+++V G +T K A
Sbjct: 19 RYSPWLVHFNTGACNGCDIEVLAAITPLYDPERFGVKLAPSIRHGDILVVTGAVTKKAAE 78
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+R+YDQMP P++VI++G+CA GG + SY V+ G D+ VPV +Y+PGCPP EA++
Sbjct: 79 RLKRLYDQMPCPKFVIAVGACACTGGVFSKSYPVLAGADKAVPVSMYIPGCPPRPEAILD 138
Query: 169 GILLLQKKIRR 179
GI+ L KK+
Sbjct: 139 GIVKLLKKLES 149
>gi|288932068|ref|YP_003436128.1| NADH-quinone oxidoreductase subunit beta [Ferroglobus placidus DSM
10642]
gi|288894316|gb|ADC65853.1| NADH-quinone oxidoreductase, B subunit [Ferroglobus placidus DSM
10642]
Length = 356
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 53/137 (38%), Positives = 76/137 (55%), Gaps = 1/137 (0%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
+ L W S+ ACC VE+ A YD ER G RQ++ ++V G
Sbjct: 12 PLAPLKKWGTKFSIWPTHLVTACCGVELAHAFASGYDGERLGVLNFGMARQTNCIVVEGA 71
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+T KMA AL+ Y+QMP+P++VI MG+C GG + Y++V+ +VPV + PGCPP
Sbjct: 72 ITRKMARALKITYEQMPDPKFVIVMGACGIKGGIFWNGYNMVKPF-EVVPVKYFAPGCPP 130
Query: 162 TAEALIYGILLLQKKIR 178
T E+L+ LQK+I
Sbjct: 131 TPESLLRCFRSLQKEID 147
>gi|146296549|ref|YP_001180320.1| NADH ubiquinone oxidoreductase, 20 kDa subunit
[Caldicellulosiruptor saccharolyticus DSM 8903]
gi|145410125|gb|ABP67129.1| ech hydrogenase subunit C [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 154
Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 79/134 (58%), Gaps = 3/134 (2%)
Query: 52 TGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + C +E++ P YD+ERFG +P+ +D+++V+G++ ++ A
Sbjct: 8 KKSPWIIHYDCNSCNGCDIEILSTLTPVYDVERFGIINVGNPKHADILVVSGSVNHRNAR 67
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+ +YDQMP P+ V+++G+CA GG + Y+ + G D ++PVD+YVPGC P EA++
Sbjct: 68 VLKNIYDQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVIPVDVYVPGCAPRPEAIME 127
Query: 169 GILLLQKKIRRVGN 182
GIL + +
Sbjct: 128 GILKAAEILEEKKK 141
>gi|161870822|ref|YP_001599995.1| NADH dehydrogenase I chain B [Neisseria meningitidis 053442]
gi|161596375|gb|ABX74035.1| NADH dehydrogenase I chain B [Neisseria meningitidis 053442]
Length = 124
Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 85/116 (73%), Positives = 97/116 (83%)
Query: 35 HKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSD 94
KGF+ TS D ++ + RTGSL +TFGLACCAVEMM A M RYDL+RFG R SPRQ+D
Sbjct: 8 KKGFITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQAD 67
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
+MIV GTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+V
Sbjct: 68 LMIVRGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVV 123
>gi|150021104|ref|YP_001306458.1| NADH dehydrogenase subunit B [Thermosipho melanesiensis BI429]
gi|149793625|gb|ABR31073.1| NADH-quinone oxidoreductase, B subunit [Thermosipho melanesiensis
BI429]
Length = 180
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 80/147 (54%), Gaps = 4/147 (2%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
I + D+L R+ SL + + C AVE+ R+D+ERFG P A+PRQ
Sbjct: 3 INERNLWEKIADKL----RSKSLWMLHYCTGCGAVELPPTMTSRFDMERFGMGPMATPRQ 58
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
+D++ + G L+ K + Y+QM EP+YVI GSC GG Y+ SY+ + D +PV
Sbjct: 59 ADILFITGYLSAKTLRRVIYTYEQMAEPKYVIGFGSCTLNGGIYYDSYATINKLDYYIPV 118
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRR 179
D+Y+ GC P EAL+ L + IR
Sbjct: 119 DLYIAGCMPRPEALLEAFNKLMRMIRS 145
>gi|332157667|ref|YP_004422946.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus sp. NA2]
gi|331033130|gb|AEC50942.1| NADH-ubiquinone oxidoreductase subunit [Pyrococcus sp. NA2]
Length = 172
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPR 87
+S + L + QL + ++ +C C +E++ A PRYD ERFG
Sbjct: 9 NSNQEERRKLERRISQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLV 68
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD 147
SPR +D+++V G +TN+ ++ VY+Q P+P+ VI++GSC GG ++ S D
Sbjct: 69 GSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVIAVGSCPTGGSVFYESPFTNAPLD 128
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
++PVD++VPGCPP EA++YG++L +K+ +
Sbjct: 129 NVIPVDVFVPGCPPRPEAILYGVVLALEKLAK 160
>gi|83591661|ref|YP_425413.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum
rubrum ATCC 11170]
gi|83574575|gb|ABC21126.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Rhodospirillum
rubrum ATCC 11170]
Length = 173
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 53/122 (43%), Positives = 74/122 (60%), Gaps = 3/122 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
SL C +E + A P YD ERFG SPR +DV++++G +T
Sbjct: 13 KRSLWVFHANAGACNGCDIEEVNAFTPYYDAERFGLKLVGSPRHADVLLISGPVTRTAEP 72
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
LRR+Y+Q P P+ VI+ GSCA GGG + SY V+ G D++VPVD Y+PGCPP EA+++
Sbjct: 73 RLRRLYEQTPNPKVVIACGSCAVGGGMWFDSYHVLGGADKVVPVDFYIPGCPPRPEAILW 132
Query: 169 GI 170
G+
Sbjct: 133 GV 134
>gi|312793271|ref|YP_004026194.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180411|gb|ADQ40581.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 154
Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 87/144 (60%), Gaps = 7/144 (4%)
Query: 46 LVTWARTGSLMWMTFGL-AC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
L A S + + +C C +E++ P YD+ERFG +P+ +D+++V+G++
Sbjct: 2 LFRKALKKSPWIVHYDCNSCNGCDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSV 61
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
++ A L+ +Y+QMP P+ V+++G+CA GG + Y+ + G D +VPVD+YVPGC P
Sbjct: 62 NHRNARVLKTIYEQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPR 121
Query: 163 AEALIYGILL----LQKKIRRVGN 182
EA++ GIL L++K + +
Sbjct: 122 PEAIMEGILKAAQLLEEKKKNIKK 145
>gi|260575431|ref|ZP_05843430.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodobacter sp. SW2]
gi|259022351|gb|EEW25648.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodobacter sp. SW2]
Length = 177
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 59/170 (34%), Positives = 85/170 (50%), Gaps = 8/170 (4%)
Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF-GLACCAVEMMQASM 74
+K E+ R+ S+ + C +E+ S
Sbjct: 12 RPLTDKAPKVDPLAVEELGEA----VKFAAYRRLGRSLSIRQVDAGSCNGCELEINALSN 67
Query: 75 PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
P YDLERFG ASPR +DV++V G +T MA AL R Y PEP++V++ G CA GG
Sbjct: 68 PYYDLERFGLHFVASPRHADVLLVTGPVTRNMAEALERTYAATPEPKWVVACGDCARDGG 127
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+ SY++V G ++PVD+++PGCPP AL+ G+L L I R G +
Sbjct: 128 CFAGSYAIVGGVAAVLPVDLHIPGCPPNPTALLQGLLAL---IERAGTAR 174
>gi|312877215|ref|ZP_07737184.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796024|gb|EFR12384.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
lactoaceticus 6A]
Length = 154
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 85/144 (59%), Gaps = 7/144 (4%)
Query: 46 LVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
L A S + + C +E++ P YD+ERFG +P+ +D+++V+G++
Sbjct: 2 LFRKALKKSPWIVHYDCNSCNGCDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSV 61
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
++ A L+ +Y+QMP P+ V+++G+CA GG + Y+ + G D +VPVD+YVPGC P
Sbjct: 62 NHRNARVLKTIYEQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPR 121
Query: 163 AEALIYGILL----LQKKIRRVGN 182
EA++ GIL L++K + +
Sbjct: 122 PEAIMEGILKAAQLLEEKKKNMKK 145
>gi|222529076|ref|YP_002572958.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
bescii DSM 6725]
gi|312134931|ref|YP_004002269.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor
owensensis OL]
gi|312622668|ref|YP_004024281.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor
kronotskyensis 2002]
gi|222455923|gb|ACM60185.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
bescii DSM 6725]
gi|311774982|gb|ADQ04469.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
owensensis OL]
gi|312203135|gb|ADQ46462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
kronotskyensis 2002]
Length = 154
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 85/144 (59%), Gaps = 7/144 (4%)
Query: 46 LVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
L A S + + C +E++ P YD+ERFG +P+ +D+++V+G++
Sbjct: 2 LFRKALKKSPWIVHYDCNSCNGCDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSV 61
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
++ A L+ +Y+QMP P+ V+++G+CA GG + Y+ + G D +VPVD+YVPGC P
Sbjct: 62 NHRNARVLKTIYEQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPR 121
Query: 163 AEALIYGILL----LQKKIRRVGN 182
EA++ GIL L++K + +
Sbjct: 122 PEAIMEGILKAAQLLEEKKKNMKK 145
>gi|224372676|ref|YP_002607048.1| hydrogenase-4 component I [Nautilia profundicola AmH]
gi|223589154|gb|ACM92890.1| hydrogenase-4 component I [Nautilia profundicola AmH]
Length = 164
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 54/141 (38%), Positives = 87/141 (61%), Gaps = 7/141 (4%)
Query: 51 RTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R S + + C +E++ A P+YD+ERFG R +P+QSD+++V G +T +
Sbjct: 8 RKKSPWILHYNTGGCNGCDIEILAALAPKYDIERFGMLNRGNPKQSDILLVTGPVTKRCR 67
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
LRR+Y +MPEP+ V++MG+CA+GGG + Y V G D I+PVD+++PGC P EA+I
Sbjct: 68 DVLRRLYLEMPEPKVVVAMGACAHGGGIFRDFYHVENGVDNIIPVDVWIPGCAPRVEAVI 127
Query: 168 YGILLL----QKKIRRVGNVK 184
G++ +KK + ++
Sbjct: 128 DGMVEAVKIWEKKTKEKEFMR 148
>gi|302872081|ref|YP_003840717.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
obsidiansis OB47]
gi|312127862|ref|YP_003992736.1| NADH ubiquinone oxidoreductase 20 kda subunit [Caldicellulosiruptor
hydrothermalis 108]
gi|302574940|gb|ADL42731.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
obsidiansis OB47]
gi|311777881|gb|ADQ07367.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Caldicellulosiruptor
hydrothermalis 108]
Length = 154
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 85/144 (59%), Gaps = 7/144 (4%)
Query: 46 LVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
L A S + + C +E++ P YD+ERFG +P+ +D+++V+G++
Sbjct: 2 LFRKALKKSPWIVHYDCNSCNGCDIEILATLTPVYDVERFGIINVGNPKHADILVVSGSV 61
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
++ A L+ +YDQMP P+ V+++G+CA GG + Y+ + G D +VPVD+YVPGC P
Sbjct: 62 NHRNARVLKTIYDQMPHPKAVVAIGACACSGGIFKECYNTLGGADTVVPVDVYVPGCAPR 121
Query: 163 AEALIYGILL----LQKKIRRVGN 182
EA++ GIL L++K + +
Sbjct: 122 PEAIMEGILKAAQLLEEKKKNMKK 145
>gi|220904936|ref|YP_002480248.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219869235|gb|ACL49570.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 185
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/133 (36%), Positives = 84/133 (63%), Gaps = 3/133 (2%)
Query: 43 VDQLVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
VD+++ +R S + F C +E++ P YD+ERFG +P+ +DV++V
Sbjct: 4 VDKMIKRSRLKSPWIVHFDCGSCNGCDIEVLACLTPMYDVERFGVVNAGNPKHADVLLVT 63
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GT+ ++ L+++Y+QMP P+ VIS+G+C GG + +Y+V+ G ++PVD++VPGC
Sbjct: 64 GTVNHRNRHVLKQIYEQMPSPKAVISLGACNLSGGVFKDTYNVLNGAHNVIPVDVFVPGC 123
Query: 160 PPTAEALIYGILL 172
PP EA+I G++
Sbjct: 124 PPKPEAIIDGVVE 136
>gi|212223636|ref|YP_002306872.1| NADH dehydrogenase subunit B [Thermococcus onnurineus NA1]
gi|212008593|gb|ACJ15975.1| nuoB NADH dehydrogenase I, subunit B [Thermococcus onnurineus NA1]
Length = 190
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 77/137 (56%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ L +AR SL ++F C +EM RYDLERFG P SPRQ D+ ++ G +
Sbjct: 7 FEPLFNYARKKSLWIVSFCTGCGGIEMPPLMTSRYDLERFGMIPDPSPRQYDLFLITGYV 66
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T K + Y+ P+P+YV++ GSC GG Y +Y+ ++ D+ +PVD+ + GC P
Sbjct: 67 TPKTLKRIIITYEMAPDPKYVLAHGSCPLNGGIYWDAYNAIKHLDKYIPVDVVIAGCMPR 126
Query: 163 AEALIYGILLLQKKIRR 179
EA++ GI + + I
Sbjct: 127 PEAVMDGIQKIMEMIEN 143
>gi|88603826|ref|YP_504004.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
hungatei JF-1]
gi|88189288|gb|ABD42285.1| Membrane bound hydrogenase subunit mbhJ [Methanospirillum hungatei
JF-1]
Length = 145
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 52/130 (40%), Positives = 80/130 (61%), Gaps = 3/130 (2%)
Query: 53 GSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
SL C +E++ A PRYD ERFG SPR +DV++V G +T++M
Sbjct: 9 RSLWVFHVNSGSCNGCDIEIVAALCPRYDPERFGIKLVGSPRHADVLLVTGPVTHQMRDR 68
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
++RVY+QM P+ V+ +G+C GG ++ SY++ D+++PVD+YVPGC P EA+IYG
Sbjct: 69 VKRVYEQMAAPKVVMCVGTCGQSGGVFYDSYNLDGPIDQVIPVDVYVPGCAPRPEAIIYG 128
Query: 170 ILLLQKKIRR 179
++ K+ R
Sbjct: 129 VVQAIAKLER 138
>gi|260892452|ref|YP_003238549.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ammonifex degensii
KC4]
gi|260864593|gb|ACX51699.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ammonifex degensii
KC4]
Length = 143
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 49/134 (36%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Query: 50 ARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
AR S + F C +E++ P YD+ERFG +P+ +D+++V G +
Sbjct: 7 ARVKSPWLLHFCSGSCNGCDIEILACLTPYYDVERFGILHMGNPKHADILLVTGPANRRN 66
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
L+ +Y QMP+P+ V+++G+CA GG +H Y+++ G D+++PVD+YVPGC EA+
Sbjct: 67 YKVLQNLYAQMPDPKVVVAVGTCACTGGIFHNCYNIMGGIDKVIPVDVYVPGCAARPEAI 126
Query: 167 IYGILLLQKKIRRV 180
I G++L KK+R
Sbjct: 127 IDGVVLALKKLRGE 140
>gi|145591231|ref|YP_001153233.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM
13514]
gi|145282999|gb|ABP50581.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 196
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER 81
+D + +S + ++++ W SL + +CC VE+ S P +D ER
Sbjct: 1 MDKPTTSMSQALREFLLKKAKLEKIFNWGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAER 60
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
+G P + RQS+V++V GT+T KMA L+ VY+QMPEP++V++MG+CA GG + SY
Sbjct: 61 WGVLPFHTMRQSNVILVEGTITRKMAKVLKMVYEQMPEPKFVLAMGACAVRGGLFWNSYH 120
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
VV+ + +Y+ GCPPT EA++ ++L KI+
Sbjct: 121 VVQVDTVVPVD-VYIAGCPPTPEAVVRAFIMLHNKIK 156
>gi|20808124|ref|NP_623295.1| Ni,Fe-hydrogenase III small subunit [Thermoanaerobacter
tengcongensis MB4]
gi|254479096|ref|ZP_05092449.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
[Carboxydibrachium pacificum DSM 12653]
gi|20516711|gb|AAM24899.1| Ni,Fe-hydrogenase III small subunit [Thermoanaerobacter
tengcongensis MB4]
gi|214034978|gb|EEB75699.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
[Carboxydibrachium pacificum DSM 12653]
Length = 247
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 80/151 (52%), Gaps = 7/151 (4%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
L + ++ R+ L + G C +E+ A P YD ERFG +SPR +D+++
Sbjct: 10 LKAKLKNVIK--RSAYLYRVDCGGCNGCEIEIFAAISPVYDPERFGIKIVSSPRHADILL 67
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
G +T M R Y P+P+ V++ G+C GG +H Y V G D+ PVD+Y+P
Sbjct: 68 FTGPMTRAMRLPAIRAYKAAPDPKIVVAYGACGCSGGIFHDCYCVWGGIDKFFPVDVYIP 127
Query: 158 GCPPTAEALIYGIL----LLQKKIRRVGNVK 184
GCPPT A +YG+ LL +KI+ V+
Sbjct: 128 GCPPTPAATLYGLAVALDLLHQKIKGEQFVE 158
>gi|119719977|ref|YP_920472.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5]
gi|119525097|gb|ABL78469.1| NADH-quinone oxidoreductase, B subunit [Thermofilum pendens Hrk 5]
Length = 142
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 52/123 (42%), Positives = 77/123 (62%), Gaps = 3/123 (2%)
Query: 51 RTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R SL F C +E + A PR+DLER G SPR +DV++V G +T A
Sbjct: 8 RRKSLWVYHFNSGGCNGCDIEFVAALTPRFDLERLGVQLVPSPRHADVLVVTGPVTRASA 67
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
AL+ +YDQ+PEPR V++ G+CA GG + Y+V+ G D+++PVD+ +PGCPP E+L+
Sbjct: 68 DALKTIYDQVPEPRIVVAFGTCACSGGVFSNCYNVLGGADKVLPVDVKIPGCPPKPESLL 127
Query: 168 YGI 170
+ +
Sbjct: 128 HAL 130
>gi|323706313|ref|ZP_08117879.1| NADH ubiquinone oxidoreductase 20 kDa subunit
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323534365|gb|EGB24150.1| NADH ubiquinone oxidoreductase 20 kDa subunit
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 157
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 7/139 (5%)
Query: 52 TGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
+ S + + C +E++ P YD+ERFG +P+ +D++IV GT+ K
Sbjct: 12 SKSPWVVHYDCGSCNGCDIEVLACMTPIYDMERFGMVNVGNPKHADILIVTGTVNEKNKD 71
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+ VYD MP+P+ V++ G CA GG + Y+V+ G D+++PVD+YVPGCP EA+I
Sbjct: 72 VLKNVYDMMPDPKVVVAAGICACSGGIFRDCYNVLGGIDKVIPVDVYVPGCPAKPEAMID 131
Query: 169 GILL----LQKKIRRVGNV 183
G+ L++K R +
Sbjct: 132 GLYKAAQILKEKYSRKEVI 150
>gi|218660809|ref|ZP_03516739.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
IE4771]
Length = 118
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 67/108 (62%), Positives = 87/108 (80%), Gaps = 1/108 (0%)
Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
RYDL+RFG R SPRQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG
Sbjct: 1 RYDLDRFGVVFRPSPRQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGV 60
Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
Y+ +Y+VV+G + VPVD++VPGCPP EAL++G LLLQ+KI+R +
Sbjct: 61 YN-TYAVVQGSETFVPVDVHVPGCPPRPEALMHGFLLLQEKIKRSRAL 107
>gi|153869972|ref|ZP_01999467.1| NADH-plastoquinone oxidoreductase subunit K [Beggiatoa sp. PS]
gi|152073562|gb|EDN70533.1| NADH-plastoquinone oxidoreductase subunit K [Beggiatoa sp. PS]
Length = 250
Score = 162 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 54/174 (31%), Positives = 90/174 (51%)
Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEM 69
+I+ + + + D S + + + L +D++ R+ SL + + C A+E+
Sbjct: 1 MIATNTIPVSSEPNTDISCRTIDPQERSMLRKVIDRIADRCRSRSLFILHYCTGCGAIEL 60
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
R+D ER G P +PRQ+D++++ G L+ K + Y+QM P+YVI MGSC
Sbjct: 61 PPTITSRFDAERLGIQPMVTPRQADILLITGYLSVKTLKRVILSYEQMQAPKYVIGMGSC 120
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
GG Y +SY+ V+ +PVD+Y+ GC P EA++ G L L I +
Sbjct: 121 TINGGMYWHSYATVKRLQEYMPVDMYMAGCMPRPEAILEGFLQLIDNIDKGKAT 174
>gi|307353719|ref|YP_003894770.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
petrolearius DSM 11571]
gi|307156952|gb|ADN36332.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
petrolearius DSM 11571]
Length = 145
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 51/130 (39%), Positives = 76/130 (58%), Gaps = 3/130 (2%)
Query: 53 GSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
SL F C +E++ MPR+D ERFG SPR +DV++V G + + M
Sbjct: 9 RSLWVFHFNSGSCNGCDIEIVATLMPRHDPERFGIKLVGSPRHADVLLVTGPVVHAMKER 68
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
L RVY+QM +P+ VI +G+C GG ++ SY++ ++PVD+YVPGC P EA+I G
Sbjct: 69 LIRVYEQMADPKVVICVGACGQSGGVFYDSYNLDGPVGEVIPVDVYVPGCAPRPEAIING 128
Query: 170 ILLLQKKIRR 179
++ K+ R
Sbjct: 129 VVKAIAKLER 138
>gi|254458925|ref|ZP_05072348.1| hydrogenase-4 component I [Campylobacterales bacterium GD 1]
gi|207084196|gb|EDZ61485.1| hydrogenase-4 component I [Campylobacterales bacterium GD 1]
Length = 184
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 51 RTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R S + + C +E++ A P+YDLERFG +P+QSDV +V G +T +
Sbjct: 8 RKKSPWILHYNAGSCNGCDIEILAALGPKYDLERFGVINTGNPKQSDVFLVTGPVTYRSR 67
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
L +Y QMPEP+ V++ GSC GG + Y+V G DR +PVD+YVPGC + E LI
Sbjct: 68 ERLVELYIQMPEPKVVVAFGSCTCTGGVFRDMYNVEDGIDRYIPVDVYVPGCAASPELLI 127
Query: 168 YGILLLQKKIRRV 180
G++ ++
Sbjct: 128 DGLVKALDILKEK 140
>gi|269216332|ref|ZP_06160186.1| hydrogenase-4 component I [Slackia exigua ATCC 700122]
gi|269130591|gb|EEZ61669.1| hydrogenase-4 component I [Slackia exigua ATCC 700122]
Length = 261
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 6/172 (3%)
Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVT-WARTGSLMWMTFG-LACCAVEMMQASMPR 76
LE+V I + I + + L+ R+ + + G C +E+ P
Sbjct: 5 LEQVPERLQAIPTRIELDESIQKAKAALLNDIKRSVYIYRVDCGGCNACEIEIFATITPV 64
Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
+D ERFG SPR +D+++ G +T M R Y+ P+P+ V+S G+C GG +
Sbjct: 65 FDAERFGIKNTPSPRHADILVFTGAVTRAMRLPAMRAYEGAPDPKLVVSYGACGCTGGIF 124
Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRVGNVK 184
H +Y V G D+I+PVD+Y+PGCPP+ IYG +L +K+ ++
Sbjct: 125 HDNYCVWGGTDQILPVDVYIPGCPPSPAQTIYGFAMTLGMLGQKLHHKETIE 176
>gi|154250405|ref|YP_001411230.1| NADH dehydrogenase subunit B [Fervidobacterium nodosum Rt17-B1]
gi|154154341|gb|ABS61573.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Fervidobacterium
nodosum Rt17-B1]
Length = 181
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 79/136 (58%)
Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
+++ R+ S+ + + C AVE+ + R+D+ER G P A+PRQ+D+ ++ G L+
Sbjct: 11 EKIADQLRSRSMWMLHYCTGCGAVELPPSMTSRFDMERLGMGPMATPRQADIFLITGYLS 70
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
K + Y++M +P+YVI GSC GG Y+ SYS + D +PVD+Y+ GC P
Sbjct: 71 AKTLRRVIYTYEKMADPKYVIGFGSCTINGGIYYDSYSTINRLDYYIPVDLYIAGCMPRP 130
Query: 164 EALIYGILLLQKKIRR 179
EA++ L + IR+
Sbjct: 131 EAILNAFNQLMEMIRK 146
>gi|116255492|ref|YP_771325.1| putative formate hydrogenlyase subunit 7 [Rhizobium leguminosarum
bv. viciae 3841]
gi|115260140|emb|CAK03241.1| putative formate hydrogenlyase subunit 7 [Rhizobium leguminosarum
bv. viciae 3841]
Length = 177
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 51/138 (36%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Query: 47 VTWARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
+ R+ S+ + C +EM YD+ERFG ASPR +DV++V G +T
Sbjct: 39 LRLGRSLSIRAVDAGSCNGCELEMHALGNTFYDIERFGLRFVASPRHADVLLVTGPVTRN 98
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
M AL R Y P+P++V+++G C GG + SY+V+ G ++VPVD+++PGCPP+
Sbjct: 99 MVQALERTYIATPDPKWVVALGDCGRDGGCFAGSYAVLGGVSKVVPVDLHIPGCPPSPMD 158
Query: 166 LIYGILLLQKKIRRVGNV 183
++ G+L L + + R G V
Sbjct: 159 ILKGLLALLEDVNREGRV 176
>gi|242399279|ref|YP_002994703.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1J (hydrogenase
subunit) [Thermococcus sibiricus MM 739]
gi|242265672|gb|ACS90354.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1J (hydrogenase
subunit) [Thermococcus sibiricus MM 739]
Length = 156
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 86/156 (55%), Gaps = 6/156 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASP 90
++ + L + +L + ++ +C C +E++ A PRYD ERFG +P
Sbjct: 1 MSEREILEKRISKLCKYLGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGIKLVGTP 60
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
R +D+++V G +T++ ++ +Y+Q P+P+ V+++G+C GG + S DR +
Sbjct: 61 RHADILLVTGPITDQSLERVKLIYEQTPDPKVVVAIGACPTGGSVFFESPFTNAPLDRHI 120
Query: 151 PVDIYVPGCPPTAEALIYGIL----LLQKKIRRVGN 182
PVD+++PGCPP EA++YG++ KKI
Sbjct: 121 PVDVFIPGCPPRPEAVLYGVVLGLEKFIKKIEGEKK 156
>gi|124485778|ref|YP_001030394.1| membrane bound hydrogenase subunit mbhJ [Methanocorpusculum
labreanum Z]
gi|124363319|gb|ABN07127.1| Membrane bound hydrogenase subunit mbhJ [Methanocorpusculum
labreanum Z]
Length = 143
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 56/129 (43%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
Query: 54 SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
SL F C +E++ PRYD ERFG SPR +DV++V G +TN+MA L
Sbjct: 10 SLWVFHFNAGSCNGCDIEIVATLTPRYDPERFGVKLVGSPRHADVLLVTGPVTNQMADRL 69
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
RRVY QM P+ V+ +G+C GG + SY++ D+I+PVD+YVPGC P EA+I G+
Sbjct: 70 RRVYAQMAGPKVVMVVGTCGQSGGVFSTSYNLAGPVDQIIPVDVYVPGCAPRPEAIINGV 129
Query: 171 LLLQKKIRR 179
+ K+ R
Sbjct: 130 VTAIAKLER 138
>gi|169831261|ref|YP_001717243.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
Desulforudis audaxviator MP104C]
gi|169638105|gb|ACA59611.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
Desulforudis audaxviator MP104C]
Length = 141
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 84/139 (60%), Gaps = 3/139 (2%)
Query: 46 LVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
L+ AR S + + C +E++ P YD+ERFG +P+ +D+++V G
Sbjct: 3 LINKARVKSPWIVHYCAGSCNGCDIEILACLTPYYDVERFGILNIGNPKHADLLVVTGPA 62
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
+ + L+ +YDQMPEP+ V+++G+CA GG +H Y+++ G DR++PVD+YVPGC
Sbjct: 63 NMRCSRVLKNLYDQMPEPKLVMAVGACAATGGVFHNCYNILGGIDRVIPVDVYVPGCAAR 122
Query: 163 AEALIYGILLLQKKIRRVG 181
EA+I G++L K+ +
Sbjct: 123 PEAIIDGVVLALDKLSNIK 141
>gi|289522403|ref|ZP_06439257.1| carbon monoxide-induced hydrogenase, CooL subunit [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289504239|gb|EFD25403.1| carbon monoxide-induced hydrogenase, CooL subunit [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 160
Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
Query: 53 GSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
S+ C +E++ PRYD+ERFG +PR +D ++V G +T M
Sbjct: 15 RSIWAFHCNSGSCNGCDIEIVALLTPRYDIERFGMKLVGTPRHADALLVTGPVTKYMTDR 74
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
LRRVY QMP P+ VI +G+C G ++ SY++ D+I+PVD+YV GCPP EA+I G
Sbjct: 75 LRRVYAQMPNPKVVIVVGNCGASGDVFYKSYNLDGPVDQILPVDVYVHGCPPRPEAIIDG 134
Query: 170 ILLLQKKIRRVGN 182
+ K+ N
Sbjct: 135 VTKAIAKLEEKRN 147
>gi|304315647|ref|YP_003850792.1| NADH ubiquinone oxidoreductase 20 kDa subunit
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302777149|gb|ADL67708.1| NADH ubiquinone oxidoreductase 20 kDa subunit
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 157
Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 52 TGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
+ S + + C +E++ P YD+ERFG +P+ +D++IV GT+ K
Sbjct: 12 SKSPWVVHYDCGSCNGCDIEVLACMTPIYDMERFGMVNVGNPKHADILIVTGTVNEKNKD 71
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+ VYD MPEP+ V++ G CA GG + Y+V+ G D+++PVD+Y+PGCP EA+I
Sbjct: 72 VLKNVYDMMPEPKVVVAAGICACSGGIFRDCYNVLGGIDKVIPVDVYIPGCPAKPEAMID 131
Query: 169 GILL----LQKKIRRVGNV 183
G+ L+ K R +
Sbjct: 132 GLYKAAQILKDKYSRREVI 150
>gi|91202885|emb|CAJ72524.1| strongly similar to membrane-bound [NiFe]-hydrogenase-3, small
subunit (chain G) [Candidatus Kuenenia stuttgartiensis]
Length = 262
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 49/119 (41%), Positives = 76/119 (63%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E++ P +DL+RFG ASPR +D ++V G T + +AL + Y PEP
Sbjct: 144 SCNGCEWEVVALLNPVHDLQRFGIDIVASPRHADCLLVTGPPTRNLETALIKGYHATPEP 203
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+ VI++G+CA GG + SY+ G D++VPVD+Y+PGCPP +A+IYG LL +++++
Sbjct: 204 KMVIALGTCACSGGIFSNSYATKNGIDKVVPVDVYIPGCPPRPQAIIYGFLLALERVQK 262
>gi|326202175|ref|ZP_08192045.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
papyrosolvens DSM 2782]
gi|325987970|gb|EGD48796.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
papyrosolvens DSM 2782]
Length = 266
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 3/165 (1%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQ--LVTWARTGSLMWMTF-GLACCAV 67
++ +S L T + +++ + R+ ++ + C
Sbjct: 97 LAQKSRDLLRATPLYVIDEEINGTDYELIGKKLNEKVAKKFGRSLNIREVDAGSCNGCDY 156
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
E+ + P D+ERFG ASPR +D+++V G ++ M AL + Y+ P P+ V++ G
Sbjct: 157 EIQALNGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLVVAAG 216
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
+CA GG + SY+ G D I+PVD+Y+PGCPP +ALIYGIL
Sbjct: 217 ACACSGGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGILK 261
>gi|315231251|ref|YP_004071687.1| membrane bound hydrogenase NiFe-hydrogenase small subunit
[Thermococcus barophilus MP]
gi|315184279|gb|ADT84464.1| membrane bound hydrogenase NiFe-hydrogenase small subunit
[Thermococcus barophilus MP]
Length = 151
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 6/150 (4%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
L + +L + ++ +C C +E++ A PRYD ERFG +PR +D+
Sbjct: 1 MLEKRIAKLCKYIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGTPRHADI 60
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
++V G +T++ ++ +Y+Q P+P+ VI++G+C GG ++ S D+ +PVD++
Sbjct: 61 LLVTGPITDQSLERVKLIYEQTPDPKVVIAVGACPTGGSVFYESPFTNAPLDKHIPVDVF 120
Query: 156 VPGCPPTAEALIYGIL----LLQKKIRRVG 181
VPGCPP EA++YG++ L KKI
Sbjct: 121 VPGCPPRPEAILYGVVLGLEKLIKKIEGEK 150
>gi|169247665|gb|ACA51664.1| EchC [Thermoanaerobacterium saccharolyticum]
Length = 157
Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 79/139 (56%), Gaps = 7/139 (5%)
Query: 52 TGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
+ S + + C +E++ P YD+ERFG +P+ +D++IV GT+ K
Sbjct: 12 SKSPWVVHYDCGSCNGCDIEVLACMTPIYDMERFGMVNVGNPKHADILIVTGTVNEKNKD 71
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+ VYD MP+P+ V++ G CA GG + Y+V+ G D+++PVD+YVPGCP EA+I
Sbjct: 72 VLKNVYDMMPDPKVVVAAGICACSGGIFRDCYNVLGGIDKVIPVDVYVPGCPAKPEAMID 131
Query: 169 GILL----LQKKIRRVGNV 183
G+ L+ K R +
Sbjct: 132 GLYKAAQILKDKYSRREVI 150
>gi|303327574|ref|ZP_07358015.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio
sp. 3_1_syn3]
gi|302862514|gb|EFL85447.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio
sp. 3_1_syn3]
Length = 187
Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 50/141 (35%), Positives = 86/141 (60%), Gaps = 3/141 (2%)
Query: 43 VDQLVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+D ++ +R S + F C +E++ P YD+ERFG +P+ +DV++V
Sbjct: 4 LDAMIKRSRLKSPWIIHFDCGSCNGCDIEVLACLTPMYDVERFGVVNTGNPKHADVLLVT 63
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
GT+ ++ LR++YDQMPEP+ V+S+G+C GG + SY+++ G ++PVD++VPGC
Sbjct: 64 GTVNHRNRHVLRQIYDQMPEPKAVVSIGACNLSGGVFKDSYNILNGAYNVIPVDVFVPGC 123
Query: 160 PPTAEALIYGILLLQKKIRRV 180
PP EA+I G++ ++
Sbjct: 124 PPKPEAIIDGVVTALDVLKAK 144
>gi|315230620|ref|YP_004071056.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus
MP]
gi|315183648|gb|ADT83833.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP]
Length = 190
Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 77/137 (56%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ L +AR SL + F C +EM RYDLERFG P +PR +D+ ++ G +
Sbjct: 7 FEPLFEFARKRSLWIVAFCTGCGGIEMPPLMTSRYDLERFGMMPNPAPRMADLFLITGYV 66
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T K + Y+ P+P+YV++ GSC GG Y +Y+ ++ D+ +PVD+Y+ GC P
Sbjct: 67 TPKTLKRIIITYEMQPDPKYVMAHGSCPLNGGIYWDAYNAIKHLDKYIPVDVYIAGCMPR 126
Query: 163 AEALIYGILLLQKKIRR 179
EA++ GI + + I
Sbjct: 127 PEAVMDGIKKIMEMIEN 143
>gi|220929108|ref|YP_002506017.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
cellulolyticum H10]
gi|219999436|gb|ACL76037.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
cellulolyticum H10]
Length = 266
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 53/174 (30%), Positives = 88/174 (50%), Gaps = 3/174 (1%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLV--TWARTGSLMWMTF-GLA 63
N+ ++ +S L + ++Q + + R+ + +
Sbjct: 93 NKFELAQKSRELLRAAPLYVGDKDVNGIDYELIGKKLNQKIGKKFGRSLHIREVDAGSCN 152
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
C E+ + P D+ERFG ASPR +D+++V G ++ M AL + Y+ P P+ V
Sbjct: 153 GCDYEVQALNGPYNDIERFGIHFVASPRHADMLLVTGCVSRNMEEALVKTYNATPSPKLV 212
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
++ G+CA GG + SY+ G D I+PVD+Y+PGCPP +ALIYGIL ++
Sbjct: 213 VAAGACACSGGLFKDSYAGRNGIDTILPVDVYIPGCPPRPQALIYGILKAIGRL 266
>gi|217077746|ref|YP_002335464.1| NADH dehydrogenase subunit B [Thermosipho africanus TCF52B]
gi|217037601|gb|ACJ76123.1| NADH dehydrogenase beta subunit [Thermosipho africanus TCF52B]
Length = 180
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 4/148 (2%)
Query: 32 EITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ +G DQL R+ SL + + C A+E+ + R+D+ERFG P A+PR
Sbjct: 2 KTNERGIWEKIADQL----RSKSLWMLYYCTGCGAIELPPSMTSRFDMERFGMGPMATPR 57
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
Q+D++ + G L+ K + Y+ M EP+YV+ GSC GG Y+ SY+ + D +P
Sbjct: 58 QTDILFITGYLSTKTLRRVIYTYEMMSEPKYVVGFGSCTLNGGIYYDSYATINKLDNYIP 117
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIRR 179
VD+Y+ GC P EAL+ L K IR
Sbjct: 118 VDLYIAGCMPRPEALLNAFNELMKMIRN 145
>gi|288575153|ref|ZP_06393510.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570894|gb|EFC92451.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 151
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 57/130 (43%), Positives = 81/130 (62%), Gaps = 7/130 (5%)
Query: 54 SLMWM-TFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
SL T +C C +E++ PRYD+ERFG +PR +DV++V G +T M L
Sbjct: 13 SLWVFSTNTGSCNGCDIEIVSTVSPRYDIERFGMKLTGTPRHADVLLVTGPVTRFMKEKL 72
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG- 169
R+Y Q+P+P+ VI++G+CA G Y SY++V DRI+PVD+YV GCPP EA+I G
Sbjct: 73 ERIYAQIPDPKVVIAVGNCACSGDVYFKSYNLVGPVDRIIPVDVYVHGCPPRPEAIIEGA 132
Query: 170 ---ILLLQKK 176
+L L+ K
Sbjct: 133 AKAVLKLEAK 142
>gi|126460561|ref|YP_001056839.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis
JCM 11548]
gi|126250282|gb|ABO09373.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum calidifontis
JCM 11548]
Length = 192
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 58/138 (42%), Positives = 86/138 (62%), Gaps = 1/138 (0%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
++ L W SL + +CC VE+ S P +D ER+G P + RQS+V++V G
Sbjct: 15 AKLEPLFKWGVRWSLWPVHLVTSCCGVEVAHTSAPGFDAERWGVLPFHTMRQSNVILVEG 74
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
T+T KMA L++VY+QMPEP++VI+MG+CA GG + SY VV+ + +Y+ GCP
Sbjct: 75 TVTKKMAKVLKQVYEQMPEPKFVIAMGACAVRGGLFWNSYHVVQVDTVVPVD-VYIAGCP 133
Query: 161 PTAEALIYGILLLQKKIR 178
PT EA+I ++L KI+
Sbjct: 134 PTPEAVIRAFIMLHNKIK 151
>gi|305664299|ref|YP_003860587.1| ech hydrogenase subunit C [Ignisphaera aggregans DSM 17230]
gi|304378868|gb|ADM28707.1| ech hydrogenase subunit C [Ignisphaera aggregans DSM 17230]
Length = 145
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 3/121 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + F C +E++ A P YD ER+G S R D++IV G +T K A
Sbjct: 6 RYSPWLVHFNTGACNGCDIEVLAAITPLYDPERYGIKLAPSIRHGDILIVTGVVTKKAAE 65
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+R+Y QMP +YV+++G+CA GG + SYSVV G ++++PVD+YVPGCPP E ++
Sbjct: 66 RLKRLYSQMPNLKYVVAVGACAYDGGVFKGSYSVVGGVNKVIPVDVYVPGCPPRPEEILR 125
Query: 169 G 169
Sbjct: 126 A 126
>gi|295401603|ref|ZP_06811571.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus
thermoglucosidasius C56-YS93]
gi|294976370|gb|EFG51980.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus
thermoglucosidasius C56-YS93]
Length = 247
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
L + ++ R+ + + G C +E+ A P +D ERFG +PR +D+++
Sbjct: 10 LKAKLKNVIK--RSVYVYRVDCGGCNGCEIEIFSAISPTFDAERFGIKVVPTPRHADILL 67
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+ G +T M R Y P+P+ V++ G+C+ GG +H Y V G + PVD+Y+P
Sbjct: 68 ITGPMTRAMRLPAIRAYQAAPDPKIVVAYGACSCSGGIFHDCYGVWGGAESAFPVDVYIP 127
Query: 158 GCPPTAEALIYGILL----LQKKIRRVGNVK 184
GCPPT A +YG+ + LQ+KI+ V+
Sbjct: 128 GCPPTPAATLYGLAMALDLLQQKIKGEQFVE 158
>gi|312110881|ref|YP_003989197.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus sp.
Y4.1MC1]
gi|311215982|gb|ADP74586.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacillus sp.
Y4.1MC1]
Length = 247
Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
L + ++ R+ + + G C +E+ A P +D ERFG +PR +D+++
Sbjct: 10 LKAKLKNVIK--RSVYVYRVDCGGCNGCEIEIFSAISPTFDAERFGIKVVPTPRHADILL 67
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+ G +T M R Y P+P+ V++ G+C+ GG +H Y V G + PVD+Y+P
Sbjct: 68 ITGPMTRAMRLPAIRAYQAAPDPKIVVAYGACSCSGGIFHDCYGVWGGAESAFPVDVYIP 127
Query: 158 GCPPTAEALIYGIL----LLQKKIRRVGNVK 184
GCPPT A +YG+ LLQ+KI+ V+
Sbjct: 128 GCPPTPAATLYGLAIALDLLQQKIKGEQFVE 158
>gi|206890862|ref|YP_002248820.1| hydrogenase-4 component I [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742800|gb|ACI21857.1| hydrogenase-4 component I [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 156
Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 80/132 (60%), Gaps = 7/132 (5%)
Query: 54 SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S+ C +E++ P YD+ERFG +SPR +D ++++G +T +
Sbjct: 15 SVWIFHVNTGACNGCDIELLDVLTPYYDIERFGMKAVSSPRHADALVISGPVTRPTVEFV 74
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
+ VY+ PEP+ VI++GSCA GG + SY+VV G D+I+PV +Y+PGCPP EA+++GI
Sbjct: 75 KSVYEATPEPKIVIALGSCATAGGIWFDSYNVVGGVDKIIPVHLYIPGCPPRPEAILFGI 134
Query: 171 LLL----QKKIR 178
+KKI+
Sbjct: 135 AQALGISKKKIK 146
>gi|294102253|ref|YP_003554111.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium
colombiense DSM 12261]
gi|293617233|gb|ADE57387.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium
colombiense DSM 12261]
Length = 153
Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 3/131 (2%)
Query: 54 SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
SL MT C +E++ PRYD+ERFG +PR +DV++V G +T M L
Sbjct: 13 SLWVMTCNSGSCNGCDIEIVATISPRYDIERFGMKLVGTPRHADVLVVTGPVTKYMKDRL 72
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
R+Y+Q+P+P+ V+ +G+C G ++ SYS+ D I+PVD+YV GCPP EA+I G+
Sbjct: 73 LRIYNQIPDPKVVVVVGNCGASGDVFYKSYSLEGPVDNIIPVDVYVHGCPPRPEAIIEGV 132
Query: 171 LLLQKKIRRVG 181
K+
Sbjct: 133 AKAVLKLESKR 143
>gi|288940086|ref|YP_003442326.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium
vinosum DSM 180]
gi|288895458|gb|ADC61294.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium
vinosum DSM 180]
Length = 154
Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + C +E++ P YD+ERFG +P+ +D+ +V G++ +
Sbjct: 5 KKSPWVLHYAATSCNGCDIELLACLTPTYDVERFGIVNTGNPKHADIFLVTGSVNEESRK 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
+ +Y QMP+P+ V+++G+CA GG + +Y+V G D+++PVD+YVPGC E++I
Sbjct: 65 VVENLYAQMPDPKVVVAIGACALSGGIFRDAYNVYGGIDQVLPVDVYVPGCAARPESIID 124
Query: 169 GILLLQKKIRRVGNVK 184
GI+ + + +
Sbjct: 125 GIVQALDILEQRAKAR 140
>gi|182415924|ref|YP_001820990.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
PB90-1]
gi|177843138|gb|ACB77390.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
PB90-1]
Length = 338
Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + C +E + P YD+ER G +P+ +D+ +V G + +
Sbjct: 5 RKSPWIIHYDASSCNGCDIETLACLTPLYDVERLGVINTGNPKHADIFLVTGAVNEQSKE 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
+R +Y Q+PEP+ V+++G CA+ GG + Y++ G DR++PVD+YVPGC EA+I
Sbjct: 65 VIRNIYHQLPEPKVVVAIGVCASSGGIFRDCYNIAGGVDRVIPVDVYVPGCAARPEAIID 124
Query: 169 GILLLQKKIRRVGN 182
G++ + R +
Sbjct: 125 GVVQALGVLERKQS 138
>gi|307352628|ref|YP_003893679.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
petrolearius DSM 11571]
gi|307155861|gb|ADN35241.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
petrolearius DSM 11571]
Length = 146
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
T S + + C +E++ P YD+ERFG +P+ +DV +V G++ +
Sbjct: 5 TKSPWIIHYDASSCNGCDIEVLACLTPLYDVERFGIINTGNPKHADVFLVTGSVNEQNKP 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
++ +Y QMP+P V+++G+CA GG + Y+V G D+++PVD+YVPGC EA+I
Sbjct: 65 VIKNIYKQMPKPNVVVAIGACALSGGVFRECYNVAGGVDKLIPVDVYVPGCAAKPEAIID 124
Query: 169 GILLLQKKIRRVG 181
G++ + +
Sbjct: 125 GVVKALGILEQKR 137
>gi|307299704|ref|ZP_07579498.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermotogales
bacterium mesG1.Ag.4.2]
gi|306914631|gb|EFN45023.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermotogales
bacterium mesG1.Ag.4.2]
Length = 179
Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 78/136 (57%)
Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
+++ R+ SL + + C A+E+ R+D+ER G P A+PRQ+D+M++ G L+
Sbjct: 9 EKVANMLRSRSLWMLYYCTGCGAIELPPTMTSRFDMERLGIGPMATPRQADIMLITGYLS 68
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
K + Y+QM P+Y++ GSC GG Y+ SY+ + D VPVD+Y+ GC P
Sbjct: 69 TKTLRRVIYSYEQMQSPKYIVGFGSCTLNGGIYYDSYATINKLDLYVPVDLYLAGCMPRP 128
Query: 164 EALIYGILLLQKKIRR 179
EA++ G L KI +
Sbjct: 129 EAIVSGFTALMSKIDK 144
>gi|312136850|ref|YP_004004187.1| NADH ubiquinone oxidoreductase 20 kda subunit [Methanothermus
fervidus DSM 2088]
gi|311224569|gb|ADP77425.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermus
fervidus DSM 2088]
Length = 157
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 80/132 (60%), Gaps = 7/132 (5%)
Query: 44 DQLVTWARTG----SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
+++ + S+ F C +E + A P YD+ER G +SPR +D++
Sbjct: 3 NKITNFFTKNILRKSMWLFHFNSGGCNGCDIEFVAALTPLYDVERMGIQLVSSPRHADIL 62
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
+V G +T + S+L+ +Y+QMP P+YVI++G+CA G + SY+V+ G D+++PVD+Y+
Sbjct: 63 VVTGPVTLQSLSSLKLIYEQMPSPKYVIAVGNCACDGCVFKDSYNVLEGVDKVLPVDVYI 122
Query: 157 PGCPPTAEALIY 168
PGCPP+ A+
Sbjct: 123 PGCPPSPRAIFR 134
>gi|260462448|ref|ZP_05810655.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium
opportunistum WSM2075]
gi|259031644|gb|EEW32913.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium
opportunistum WSM2075]
Length = 179
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
Query: 50 ARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
R+ S+ + C +EM + +D+ERFG ASPR +DV++V G +T M
Sbjct: 42 GRSLSIRAVDAGSCNGCELEMHALNNAFHDIERFGIRFVASPRHADVLLVTGPVTKNMRE 101
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
AL+R YD P P++V+++G CA GG + SY+V+RG +PVD+++PGCPP ++
Sbjct: 102 ALKRTYDATPNPKWVVALGDCAGNGGCFAGSYAVMRGVSEALPVDLHIPGCPPPPIEILK 161
Query: 169 GILLLQKKI-RRVGNVK 184
G+L L + + + G V+
Sbjct: 162 GLLTLLEGVNSKTGAVR 178
>gi|297720477|ref|NP_001172600.1| Os01g0791600 [Oryza sativa Japonica Group]
gi|255673769|dbj|BAH91330.1| Os01g0791600 [Oryza sativa Japonica Group]
Length = 379
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 54/102 (52%), Positives = 77/102 (75%), Gaps = 1/102 (0%)
Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C G
Sbjct: 150 GSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITG 209
Query: 134 GYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
G + SYS VRG D+++PVD+Y+PGCPP EA+I + L
Sbjct: 210 GMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDALTKLL 251
>gi|86748390|ref|YP_484886.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris HaA2]
gi|86571418|gb|ABD05975.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris HaA2]
Length = 177
Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 91/171 (53%), Gaps = 5/171 (2%)
Query: 15 SSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF-GLACCAVEMMQAS 73
+ E A +E+ + L + +++ R+ S+ + C +E+ +
Sbjct: 11 AKPLTESPPAPDDAAVAELAAR--LDATARRML--GRSLSIREVDAGSCNGCELEIHALN 66
Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
YD+ERFG ASPR +DV++V G +T+ M ALR YD +P P++V+++G CA G
Sbjct: 67 NAYYDVERFGLRFVASPRHADVLMVTGPVTHNMREALRLTYDAVPGPKWVVAVGDCAKDG 126
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
G + SY+V G ++PVD+++PGCPP+ ++ G+L L + +
Sbjct: 127 GCFAGSYAVAGGVSAVIPVDLHIPGCPPSPMQILRGLLALLDSVSERETSR 177
>gi|326202291|ref|ZP_08192160.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
papyrosolvens DSM 2782]
gi|325987409|gb|EGD48236.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
papyrosolvens DSM 2782]
Length = 149
Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 50 ARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
+R S M + C +E + P YD ER G +P+ +D+++V G++ +
Sbjct: 7 SRKKSPWIMHYDCTSCNGCDIETLACLTPLYDAERLGIINVGNPKHADILLVTGSVNKRN 66
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
L+ +Y+QMP+P+ V+++G+CA GG + Y+V+ G + ++PVD++VPGC EA+
Sbjct: 67 EIVLKNIYNQMPDPKCVVAIGACACTGGIFRECYNVLGGVENVIPVDVFVPGCCARPEAI 126
Query: 167 IYGILLLQKKIRRV 180
I GI+ K+
Sbjct: 127 IDGIVQAIGKLDEK 140
>gi|67968299|dbj|BAE00199.1| NADH dehydrogenase subunit K [Selaginella uncinata]
Length = 215
Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 89/175 (50%), Gaps = 1/175 (0%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA 66
+ I + + + + + T + T+ + AR S +G +CC
Sbjct: 11 DNSIGNDSVNPVVNSMGRPTPGVDRAATPDSIIPTTPNDFTNRARLPSSRPPPYGTSCCF 70
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
E R D +R G PR+SPRQ+D++I AGT T KMA +L R Y+Q PEP++ I+M
Sbjct: 71 TEFAPLIGSRSDSDRHGSVPRSSPRQADLIITAGTATTKMAPSLVRSYEQTPEPKHAIAM 130
Query: 127 GSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
G+C GG +S VRG D+ +P D Y PG PP EA++ + ++K+ R
Sbjct: 131 GACTVTGGMLSTDPHSTVRGVDKSIPADTYPPGRPPKPEAIVDATIKPREKVSRE 185
>gi|242399881|ref|YP_002995306.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxJ
(dehydrogenase subunit) [Thermococcus sibiricus MM 739]
gi|242266275|gb|ACS90957.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxJ
(dehydrogenase subunit) [Thermococcus sibiricus MM 739]
Length = 193
Score = 157 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 76/139 (54%)
Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
+ L+ +AR S+ + F C +EM RYDLERFG P +PR +D+ ++ G +T
Sbjct: 8 EPLINFARKRSMWIVAFCTGCGGIEMPPLMTSRYDLERFGMMPNPAPRMADLFLITGYVT 67
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
K + Y+ P+P+YV++ GSC GG Y Y+ ++ D+ +PVD+ + GC P
Sbjct: 68 PKTLKRIIITYEMQPDPKYVLAHGSCPLNGGIYWDGYNAIKHLDKYLPVDVAIAGCMPRP 127
Query: 164 EALIYGILLLQKKIRRVGN 182
EA++ GI + + I
Sbjct: 128 EAVMDGIKKIMELIDSGKA 146
>gi|90407577|ref|ZP_01215758.1| hydrogenase-4 component I [Psychromonas sp. CNPT3]
gi|90311280|gb|EAS39384.1| hydrogenase-4 component I [Psychromonas sp. CNPT3]
Length = 261
Score = 157 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 54/144 (37%), Positives = 80/144 (55%), Gaps = 5/144 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ A+ P +D ERFG ASPR +D+++ G +T
Sbjct: 32 LKEIKRSAYVYRVDCGGCNGCEIEIFAATTPVFDTERFGIKIVASPRHADILLFTGAVTR 91
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M R Y+ P+P+ VIS G+C GG +H Y V G D+IVPVD+Y+PGCPPT
Sbjct: 92 AMRMPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 151
Query: 165 ALIYGILL----LQKKIRRVGNVK 184
A IYG + L +K++ + +
Sbjct: 152 ATIYGFAMALGLLDQKLKSRSHSE 175
>gi|147919461|ref|YP_686799.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured
methanogenic archaeon RC-I]
gi|110622195|emb|CAJ37473.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured
methanogenic archaeon RC-I]
Length = 247
Score = 157 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 51/122 (41%), Positives = 72/122 (59%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C VE+ S YD+ERFG ASPR +D ++V G +T M L + Y+ P+P
Sbjct: 126 SCNGCEVEVNSLSNAIYDIERFGLHIVASPRHADALLVTGPVTRNMERGLMQSYNATPDP 185
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+ VI+MG+CA GG + SY+V G D +VPVD+Y+PGCPP +A+I GI+L +
Sbjct: 186 KMVIAMGACAITGGIFRDSYAVYNGVDALVPVDVYIPGCPPRPQAIIQGIMLAIDRWEEK 245
Query: 181 GN 182
Sbjct: 246 RK 247
>gi|296446945|ref|ZP_06888880.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus
trichosporium OB3b]
gi|296255512|gb|EFH02604.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus
trichosporium OB3b]
Length = 169
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 50 ARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
R+ S+ + C +E+ + YDLERFG ASPR +DV++V G +T M
Sbjct: 42 GRSLSIREVDAGSCNACELEIHALNNAFYDLERFGLRFVASPRHADVLLVTGPMTKNMRE 101
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
A+ R Y P+P++V+++G CA GG Y SY+ G D+++PVD+++ GCPP AL+
Sbjct: 102 AVERTYAATPDPKWVVAVGDCACSGGLYAESYACEGGVDKVIPVDLHIRGCPPEPVALLE 161
Query: 169 GILLLQK 175
G++ L +
Sbjct: 162 GLIALVE 168
>gi|270263099|ref|ZP_06191369.1| hypothetical protein SOD_d01150 [Serratia odorifera 4Rx13]
gi|270042787|gb|EFA15881.1| hypothetical protein SOD_d01150 [Serratia odorifera 4Rx13]
Length = 265
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 14/183 (7%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACC 65
NQ +I + + I+ L T++ L R+ + + G C
Sbjct: 2 NQTLIGPRDANGQPVPITLDDSIAQ-------LKTTL--LKDIRRSAYVYRVDCGGCNGC 52
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
+E+ A P +D ERFG SPR +D+++ G +T M R + P+P+ IS
Sbjct: 53 EIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPAIRAWQASPDPKICIS 112
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
G+C N GG +H Y V G DRIVPVD+Y+PGCPPT A IYG + L++KI R
Sbjct: 113 YGACGNSGGIFHDLYCVWGGTDRIVPVDVYIPGCPPTPAATIYGFAMALGLLEQKIHRQQ 172
Query: 182 NVK 184
+ +
Sbjct: 173 HDE 175
>gi|160879875|ref|YP_001558843.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
phytofermentans ISDg]
gi|160428541|gb|ABX42104.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
phytofermentans ISDg]
Length = 144
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 79/132 (59%), Gaps = 7/132 (5%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + C +E++ P YD+ERFG +P+ +D++++ G++ +
Sbjct: 5 KKSPWIIHYDGSSCNGCDIEVLACLTPLYDVERFGIINTGNPKHADILLITGSVNEQNIP 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
++++Y+QM EP+ V+++G CAN GG + Y+V G D+++PVD+YVPGC EA+I
Sbjct: 65 VVKQIYEQMAEPKIVVAVGICANSGGIFAECYNVSGGVDKVLPVDVYVPGCAARPEAIID 124
Query: 169 GILL----LQKK 176
G++ L++K
Sbjct: 125 GVVKGLAILEEK 136
>gi|160902353|ref|YP_001567934.1| NADH dehydrogenase subunit B [Petrotoga mobilis SJ95]
gi|160359997|gb|ABX31611.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Petrotoga mobilis
SJ95]
Length = 195
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 77/136 (56%)
Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT 103
+++ R SL + + C AVE+ R+D+ER G P A+PRQ+DV+++ G L+
Sbjct: 25 EKIKNIFRGKSLWMLHYCTGCGAVELPPTMTARFDMERLGMGPMATPRQADVLLITGYLS 84
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
K + Y+QM P+Y++ GSC GG Y+ SY+V+ D +PVD+YV GC P
Sbjct: 85 VKTLRRVIYTYEQMMTPKYLVGFGSCTINGGIYYDSYAVINRLDYYLPVDLYVAGCMPRP 144
Query: 164 EALIYGILLLQKKIRR 179
EA++ L+ I +
Sbjct: 145 EAIMNTFKTLENMITK 160
>gi|14325377|dbj|BAB60281.1| NADH dehydrogenase I chain B [Thermoplasma volcanium GSS1]
Length = 116
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 67/113 (59%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 69 MMQASMPRYDLERFG-FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
MM D+ RFG R SPRQSD+MIV+GT+T KMA +RR+YD+MP P+YVI+ G
Sbjct: 1 MMAIQASDMDISRFGSEIFRNSPRQSDLMIVSGTVTKKMAPRVRRIYDEMPYPKYVIAQG 60
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
C GG Y+ YSVV G D++VPVD+YVPGCPPT EAL GI+LLQKKIR
Sbjct: 61 VCVIQGGPYNQGYSVVLGVDKVVPVDVYVPGCPPTPEALTNGIILLQKKIRGE 113
>gi|256826557|ref|YP_003150516.1| Ni,Fe-hydrogenase III small subunit [Cryptobacterium curtum DSM
15641]
gi|256582700|gb|ACU93834.1| Ni,Fe-hydrogenase III small subunit [Cryptobacterium curtum DSM
15641]
Length = 283
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/185 (27%), Positives = 87/185 (47%), Gaps = 5/185 (2%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LA 63
+ I+ G + S ++ ++ + L R+ + + G
Sbjct: 11 STQSSIMQGYETRSTATAQKLQYQLEPKVLDQKIAEAKAALLNDIKRSVYIYRVDCGGCN 70
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
C +E+ P +D ERFG ASPR +D+++ G +T M R Y+ P+P+ +
Sbjct: 71 GCEIEIFGTLTPVFDAERFGIKNMASPRHADILVYTGAVTRAMRLPALRAYEAAPDPKLI 130
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIRR 179
+S G+C GG +H +Y V G D++ PVD+Y+PGCPP+ IYG + L +K+
Sbjct: 131 VSYGACGCTGGIFHDNYCVWGGTDKLFPVDVYIPGCPPSPAQTIYGFAMALGLLGQKLHE 190
Query: 180 VGNVK 184
V+
Sbjct: 191 KHLVE 195
>gi|220930729|ref|YP_002507638.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
cellulolyticum H10]
gi|220001057|gb|ACL77658.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
cellulolyticum H10]
Length = 149
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 50 ARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
+R S + + C +E + P YD ER G +P+ +D+++V G++ +
Sbjct: 7 SRKKSPWIIHYDCTSCNGCDIETLACLTPMYDAERLGIINVGNPKHADILLVTGSVNKRN 66
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
L+ +Y+QMP+P+ V+++G+CA GG + Y+V+ G + ++PVD++VPGC EA+
Sbjct: 67 ELVLKNIYNQMPDPKCVVAIGACACTGGIFKECYNVLGGVENVIPVDVFVPGCCARPEAI 126
Query: 167 IYGILLLQKKIRRV 180
I GI+ K+
Sbjct: 127 IDGIVQAIGKLDDK 140
>gi|182414281|ref|YP_001819347.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
PB90-1]
gi|177841495|gb|ACB75747.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
PB90-1]
Length = 279
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 52/120 (43%), Positives = 75/120 (62%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C VE+ S P YDLERFG ASPR +D+++V G +T M ALR+ YD PEP
Sbjct: 160 SCNGCEVEINALSGPIYDLERFGIHLVASPRHADMLLVTGPVTRNMELALRKTYDATPEP 219
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R V+++G+C GG + +Y+ D ++PVD+Y+PGCPP AL++GILL ++ +
Sbjct: 220 RLVVAVGACGCSGGMFGRNYATCGSVDSVLPVDVYIPGCPPNPFALLHGILLAVGRLEKR 279
>gi|209964717|ref|YP_002297632.1| hydrogenase-4 Fe-S subunit I [Rhodospirillum centenum SW]
gi|209958183|gb|ACI98819.1| hydrogenase-4 Fe-S subunit I [Rhodospirillum centenum SW]
Length = 196
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 77/122 (63%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P YDLERFGF+ ASPR +DV++V G +T M AL + ++ P+P
Sbjct: 54 SCNACEMEIHALNNPVYDLERFGFSFVASPRHADVLLVTGPVTTNMREALLKTWEATPDP 113
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
++V+++G CA GG + SY+VV G +++VPVD+ +PGCPP ++ ++ L + R
Sbjct: 114 KWVVALGQCAIDGGPFADSYAVVGGVEKVVPVDLMIPGCPPRPVDILAALVALIEAEARP 173
Query: 181 GN 182
+
Sbjct: 174 PS 175
>gi|27381455|ref|NP_772984.1| hydrogenase-3 subunit G [Bradyrhizobium japonicum USDA 110]
gi|27354623|dbj|BAC51609.1| hycG [Bradyrhizobium japonicum USDA 110]
Length = 177
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 74/122 (60%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + YD+ERFG ASPR +DV++V G +T M AL R Y P+P
Sbjct: 54 SCNGCELEIHALNNAYYDVERFGLRFVASPRHADVLMVTGPVTKNMRDALERTYHATPDP 113
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
++V+++G CA GG + SY+VV G ++VPVD+++PGCPP ++ G+L L + +
Sbjct: 114 KWVVAVGDCARDGGCFAGSYAVVGGVSQVVPVDLHIPGCPPPPTTILRGLLALLDQAAKN 173
Query: 181 GN 182
+
Sbjct: 174 TS 175
>gi|268324502|emb|CBH38090.1| F420H2-quinone oxidoreductase, subunit BCD fusion [uncultured
archaeon]
Length = 772
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 57/147 (38%), Positives = 80/147 (54%), Gaps = 1/147 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ + + W+ SL F +CC VE+ A YD ER G
Sbjct: 5 KDANVRNLNSGILSPFRRWSSKWSLWPCHFITSCCGVELAHAFASGYDGERLGTLNLGIS 64
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
RQS+ +IV GT+T KMA AL+ V+ QMP+P++V +G+C GG + SY++ D IV
Sbjct: 65 RQSNYIIVEGTITRKMARALQFVWGQMPDPKFVNVIGACGQRGGIFWNSYNITHPSD-IV 123
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKI 177
PVD ++PGCP T EAL+ G+ Q KI
Sbjct: 124 PVDAFIPGCPITPEALLRGVRATQDKI 150
>gi|317493922|ref|ZP_07952339.1| NADH ubiquinone oxidoreductase [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918249|gb|EFV39591.1| NADH ubiquinone oxidoreductase [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 274
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 60/182 (32%), Positives = 89/182 (48%), Gaps = 20/182 (10%)
Query: 7 NQKIISGQSSCSLE---KVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-L 62
N II + + L VD +++ S + L R+ + + G
Sbjct: 12 NSPIIGPRDANGLPVPITVDEQIAKLKSTL------------LKDIRRSAYVYRVDCGGC 59
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
C +E+ A P +D ERFG SPR +D+++ G +T M R Y+ P+P+
Sbjct: 60 NGCEIEIFSALTPLFDTERFGIKVVPSPRHADILLFTGAVTRSMRIPAIRAYESAPDPKI 119
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIR 178
VIS G+C GG +H Y V G D+IVPVD+Y+PGCPPT A IYG + L +K++
Sbjct: 120 VISYGACGCSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKLK 179
Query: 179 RV 180
Sbjct: 180 GE 181
>gi|302670765|ref|YP_003830725.1| ech hydrogenase subunit C EchC [Butyrivibrio proteoclasticus B316]
gi|302395238|gb|ADL34143.1| ech hydrogenase subunit C EchC [Butyrivibrio proteoclasticus B316]
Length = 228
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 81/135 (60%), Gaps = 7/135 (5%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
+ S + + C +E++ P YD+ERFG +P+ +DV+++ G + + A
Sbjct: 4 SKSPWVLHYDGSSCNGCDIEVLATMTPLYDVERFGIINTGNPKHADVLLLTGGVNAQTAP 63
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
+R++Y+ MP+P+ V++ G CA GG + Y+++ G D++VPVD+YVPGC EALI
Sbjct: 64 VIRQLYNMMPDPKVVVACGICACDGGIFKECYNILGGADKVVPVDVYVPGCAVRPEALIE 123
Query: 169 GILL----LQKKIRR 179
G++ L++K ++
Sbjct: 124 GVVKAVGILEEKRKK 138
>gi|215488035|ref|YP_002330466.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli O127:H6 str. E2348/69]
gi|215266107|emb|CAS10532.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli O127:H6 str. E2348/69]
Length = 255
Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + FG C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDFGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|148699634|gb|EDL31581.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_c [Mus
musculus]
Length = 167
Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 80/92 (86%), Positives = 87/92 (94%)
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
+DVMIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 71 ADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPV 130
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
DIYVPGCPPTAEAL+YGIL LQ+KI+R +K
Sbjct: 131 DIYVPGCPPTAEALLYGILQLQRKIKREQKLK 162
>gi|157148257|ref|YP_001455576.1| hypothetical protein CKO_04074 [Citrobacter koseri ATCC BAA-895]
gi|157085462|gb|ABV15140.1| hypothetical protein CKO_04074 [Citrobacter koseri ATCC BAA-895]
Length = 255
Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|126178312|ref|YP_001046277.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoculleus
marisnigri JR1]
gi|125861106|gb|ABN56295.1| ech hydrogenase subunit C [Methanoculleus marisnigri JR1]
Length = 160
Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + C +E++ P YD+ERFG +P+ +D++++ G + +
Sbjct: 5 KRSPWILHYDASSCNGCDIEVLACLTPLYDVERFGMINTGNPKHADILLITGGINTQNRE 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
+ +Y+QMPEP+ VI++G CA GG + Y++V G D+++PVD+YVPGC E +I
Sbjct: 65 VVENIYEQMPEPKVVIAVGVCAATGGIFRECYNIVGGIDKVIPVDVYVPGCAARPEQIID 124
Query: 169 GILLLQKKIRRVGN 182
G++ + +
Sbjct: 125 GVVTALSILEKKRA 138
>gi|78223793|ref|YP_385540.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
metallireducens GS-15]
gi|78195048|gb|ABB32815.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
metallireducens GS-15]
Length = 244
Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 48/118 (40%), Positives = 68/118 (57%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + S +DL RFG ASPR +D + V G +T MA AL Y+ +P+P
Sbjct: 126 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTEHMAKALLTTYEAIPDP 185
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+ V++ G+CA GG Y + V G D IVPVD+Y+PGCPP ++ G+L + KI+
Sbjct: 186 KIVVACGACAINGGPYIDTPQVCNGVDSIVPVDLYIPGCPPHPATILDGLLRILNKIK 243
>gi|269104123|ref|ZP_06156819.1| formate hydrogenlyase subunit 7 [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268160763|gb|EEZ39260.1| formate hydrogenlyase subunit 7 [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 287
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 44 DQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
D L+ R + ++ C C +E+ A+ P +D ERFG ASPR +D+++ G
Sbjct: 29 DALIKQIRRSAYVYRVDCGGCNACEIEIFAATTPVFDAERFGIKVVASPRHADILLFTGA 88
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+T M + R Y+ P+P+ VIS G+C GG +H Y V G D+IVPVD+Y+PGCPP
Sbjct: 89 VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148
Query: 162 TAEALIYGIL----LLQKKIRRV 180
T A IYG LL +K++
Sbjct: 149 TPAATIYGFAVALGLLDQKLKSK 171
>gi|198244148|ref|YP_002216819.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|197938664|gb|ACH75997.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|326624578|gb|EGE30923.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 255
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|148264693|ref|YP_001231399.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
uraniireducens Rf4]
gi|146398193|gb|ABQ26826.1| ech hydrogenase subunit C [Geobacter uraniireducens Rf4]
Length = 147
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 47 VTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
+ W + + +C C +E++ + P YDLERFG +P+ +D++ V G++
Sbjct: 1 MGWFKRSPWVLHYNATSCNGCDIELIASLTPLYDLERFGIMSTGNPKHADILAVTGSVNE 60
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
K L+ +YDQMP P+ ++++G CA G + Y+V+ G D+++PVD+YVPGC E
Sbjct: 61 KSRQVLQNLYDQMPNPKVIVAVGICATSGCVFQDCYNVLGGVDKVLPVDVYVPGCAARPE 120
Query: 165 ALIYGILL----LQKKIRRVGNV 183
A+I G+L L++K +
Sbjct: 121 AIIDGVLKACDILEEKYAQRKKT 143
>gi|156937336|ref|YP_001435132.1| NADH-quinone oxidoreductase, B subunit [Ignicoccus hospitalis
KIN4/I]
gi|156566320|gb|ABU81725.1| NADH-quinone oxidoreductase, B subunit [Ignicoccus hospitalis
KIN4/I]
Length = 207
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 13/162 (8%)
Query: 26 FSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFA 85
F ++S E+ K V + + W+R SL + G+ CCA+EMMQA+ +D ER G
Sbjct: 6 FKKVSRELIKKS---APVKEALKWSRRNSLWLLHLGIMCCAIEMMQAAFAFHDFERLGVL 62
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
RA+PRQ DV+++ G + K+A LRR++ Q P PR+VI MG CA GG + S V+ G
Sbjct: 63 ARATPRQVDVILINGPVNRKLAERLRRLFMQTPGPRFVIVMGECAINGGPWWQSDYVLDG 122
Query: 146 CDRIVP-------VDIYV---PGCPPTAEALIYGILLLQKKI 177
++ D++V GCPP E L+ IL +++ I
Sbjct: 123 IHEVIESLPEEYRKDVHVVNLAGCPPRPEGLLRAILKMEELI 164
>gi|207858110|ref|YP_002244761.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|206709913|emb|CAR34267.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
Length = 255
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 23 DADFSRISSEIT-HKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLE 80
D + I + +T + L R+ + + G C +E+ P +D E
Sbjct: 7 PRDANGIPAPMTVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
RFG SPR +D+++ G +T M S R + P+P+ IS G+C N GG +H Y
Sbjct: 67 RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKI 177
V G D+IVPVD+Y+PGCPPT A +YG + L++KI
Sbjct: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|330829825|ref|YP_004392777.1| formate hydrogenlyase subunit 7 [Aeromonas veronii B565]
gi|328804961|gb|AEB50160.1| Formate hydrogenlyase subunit 7 [Aeromonas veronii B565]
Length = 271
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 7/149 (4%)
Query: 40 VTSVDQ--LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
+T + + L R+ + + G C +E+ P +D ERFG ASPR +D++
Sbjct: 27 ITKLKKTLLKDIRRSAYVYRVDCGGCNACEIEIFATITPLFDAERFGIKVVASPRHADIL 86
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
+ G +T M R Y+ P+P+ I+ G+C GG +H Y V G D+IVPVD+Y+
Sbjct: 87 LFTGAVTRAMRVPALRAYEAAPDPKICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYI 146
Query: 157 PGCPPTAEALIYGIL----LLQKKIRRVG 181
PGCPPT A IYG LL++K++
Sbjct: 147 PGCPPTPAATIYGFAVALGLLEQKLKATS 175
>gi|283786731|ref|YP_003366596.1| formate hydrogenlyase subunit 7 [Citrobacter rodentium ICC168]
gi|282950185|emb|CBG89821.1| formate hydrogenlyase subunit 7 [Citrobacter rodentium ICC168]
Length = 255
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|204928419|ref|ZP_03219619.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204322741|gb|EDZ07938.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 255
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|168230908|ref|ZP_02655966.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194445653|ref|YP_002042089.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194472446|ref|ZP_03078430.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|197265511|ref|ZP_03165585.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|194404316|gb|ACF64538.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194458810|gb|EDX47649.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|197243766|gb|EDY26386.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|205334465|gb|EDZ21229.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 255
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|218547773|ref|YP_002381564.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia fergusonii ATCC 35469]
gi|218355314|emb|CAQ87921.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia fergusonii ATCC 35469]
Length = 255
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ V L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKVSLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|260597692|ref|YP_003210263.1| formate hydrogenlyase subunit 7 [Cronobacter turicensis z3032]
gi|260216869|emb|CBA30407.1| Formate hydrogenlyase subunit 7 [Cronobacter turicensis z3032]
Length = 254
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ P +D ERFG SPR +D+++ G +T
Sbjct: 30 LKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 89
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M S R ++ P+P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT
Sbjct: 90 AMRSPALRAWESAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 149
Query: 165 ALIYGILL----LQKKI 177
A +YG + L++KI
Sbjct: 150 ATLYGFAMALGLLEQKI 166
>gi|156934233|ref|YP_001438149.1| hypothetical protein ESA_02063 [Cronobacter sakazakii ATCC BAA-894]
gi|156532487|gb|ABU77313.1| hypothetical protein ESA_02063 [Cronobacter sakazakii ATCC BAA-894]
Length = 254
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ P +D ERFG SPR +D+++ G +T
Sbjct: 30 LKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 89
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M S R ++ P+P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT
Sbjct: 90 AMRSPALRAWESAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 149
Query: 165 ALIYGILL----LQKKI 177
A +YG + L++KI
Sbjct: 150 ATLYGFAMALGLLEQKI 166
>gi|323212811|gb|EFZ97622.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
Length = 228
Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ P +D ERFG SPR +D+++ G +T
Sbjct: 4 LKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 63
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M S R + P+P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT
Sbjct: 64 AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 123
Query: 165 ALIYGILL----LQKKI 177
A +YG + L++KI
Sbjct: 124 ATLYGFAMALGLLEQKI 140
>gi|16766153|ref|NP_461768.1| hydrogenase [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|62181350|ref|YP_217767.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161502108|ref|YP_001569220.1| hypothetical protein SARI_00125 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|161615750|ref|YP_001589715.1| hypothetical protein SPAB_03541 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167550313|ref|ZP_02344070.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167994151|ref|ZP_02575243.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168235879|ref|ZP_02660937.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168242577|ref|ZP_02667509.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168262039|ref|ZP_02684012.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168464027|ref|ZP_02697944.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168820465|ref|ZP_02832465.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194448464|ref|YP_002046808.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194734314|ref|YP_002115800.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197248973|ref|YP_002147745.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|200388880|ref|ZP_03215492.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|224584624|ref|YP_002638422.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238909614|ref|ZP_04653451.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|16421393|gb|AAL21727.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|62128983|gb|AAX66686.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|160863455|gb|ABX20078.1| hypothetical protein SARI_00125 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161365114|gb|ABX68882.1| hypothetical protein SPAB_03541 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194406768|gb|ACF66987.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194709816|gb|ACF89037.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195633447|gb|EDX51861.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197212676|gb|ACH50073.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197290829|gb|EDY30183.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|199605978|gb|EDZ04523.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205324705|gb|EDZ12544.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205327917|gb|EDZ14681.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205337969|gb|EDZ24733.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205342888|gb|EDZ29652.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205348984|gb|EDZ35615.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224469151|gb|ACN46981.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261247983|emb|CBG25816.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267994970|gb|ACY89855.1| hydrogenase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301159407|emb|CBW18925.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312913865|dbj|BAJ37839.1| formate hydrogenlyase subunit G [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087250|emb|CBY97015.1| NAD(P)H-quinone oxidoreductase subunit K, chloroplastic NAD(P)H
dehydrogenase subunit K; NADH-plastoquinone
oxidoreductase subunit K [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321223400|gb|EFX48466.1| Formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322614334|gb|EFY11265.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322621601|gb|EFY18454.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322624462|gb|EFY21295.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628793|gb|EFY25576.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322633480|gb|EFY30222.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322635944|gb|EFY32652.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322639652|gb|EFY36337.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646835|gb|EFY43338.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650603|gb|EFY47008.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654785|gb|EFY51104.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322659005|gb|EFY55258.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664428|gb|EFY60622.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668323|gb|EFY64480.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673697|gb|EFY69798.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677758|gb|EFY73821.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681412|gb|EFY77444.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322683814|gb|EFY79824.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322715833|gb|EFZ07404.1| hydrogenase [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323131198|gb|ADX18628.1| hydrogenase [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|323193797|gb|EFZ79000.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323200267|gb|EFZ85349.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323203230|gb|EFZ88259.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323205523|gb|EFZ90488.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323216337|gb|EGA01064.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221085|gb|EGA05516.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226906|gb|EGA11088.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323230810|gb|EGA14928.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323234839|gb|EGA18925.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323238878|gb|EGA22928.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323241578|gb|EGA25609.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323248275|gb|EGA32211.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251141|gb|EGA35014.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256024|gb|EGA39762.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263159|gb|EGA46697.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264336|gb|EGA47842.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271163|gb|EGA54591.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|332989719|gb|AEF08702.1| hydrogenase [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 255
Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|283835553|ref|ZP_06355294.1| hydrogenase-4 component I [Citrobacter youngae ATCC 29220]
gi|291068763|gb|EFE06872.1| hydrogenase-4 component I [Citrobacter youngae ATCC 29220]
Length = 255
Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|125975501|ref|YP_001039411.1| ech hydrogenase subunit C [Clostridium thermocellum ATCC 27405]
gi|256004211|ref|ZP_05429194.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
thermocellum DSM 2360]
gi|281419466|ref|ZP_06250480.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
thermocellum JW20]
gi|125715726|gb|ABN54218.1| ech hydrogenase subunit C [Clostridium thermocellum ATCC 27405]
gi|255991801|gb|EEU01900.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
thermocellum DSM 2360]
gi|281406872|gb|EFB37136.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
thermocellum JW20]
gi|316939621|gb|ADU73655.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
thermocellum DSM 1313]
Length = 145
Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + C +E++ P YD+ERFG +P+ +D++++ G++ + S
Sbjct: 5 KKSPWILHYDGSSCNGCDIEVLACLTPLYDIERFGVINTGNPKHADILLITGSINEQNKS 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
++++Y+QM +P+ V+++G CA GG + Y+V G D+I+PVD+YVPGC EA+I
Sbjct: 65 VVKQLYEQMADPKVVVAVGICAATGGIFSECYNVSGGVDKIIPVDVYVPGCAARPEAIID 124
Query: 169 GILLLQKKIRRVGN 182
G++ +
Sbjct: 125 GVVKALGILEERQK 138
>gi|325290171|ref|YP_004266352.1| ech hydrogenase subunit C [Syntrophobotulus glycolicus DSM 8271]
gi|324965572|gb|ADY56351.1| ech hydrogenase subunit C [Syntrophobotulus glycolicus DSM 8271]
Length = 145
Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 82/137 (59%), Gaps = 7/137 (5%)
Query: 54 SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S + + C +E++ P YD+ERFG +P+ +D+ ++ G++ + + +
Sbjct: 7 SPWLVHYDASSCNGCDIEVLACLTPLYDVERFGVLNIGNPKHADIFVITGSVNEQNKTVI 66
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
+ +YDQMPEP+ V+++G+CA GG + Y+V G D+++PVD+YVPGC EA+I G+
Sbjct: 67 KNIYDQMPEPKVVVAIGACATSGGVFRQCYNVQGGVDKVIPVDVYVPGCAARPEAIIDGV 126
Query: 171 LL----LQKKIRRVGNV 183
+ L+ K + +G V
Sbjct: 127 VQGLAVLESKYKNMGKV 143
>gi|56414799|ref|YP_151874.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197363727|ref|YP_002143364.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56129056|gb|AAV78562.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197095204|emb|CAR60755.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 255
Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|323180140|gb|EFZ65692.1| formate hydrogenlyase subunit 7 [Escherichia coli 1180]
Length = 239
Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 2 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 61
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 62 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 121
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 122 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 155
>gi|312973071|ref|ZP_07787244.1| formate hydrogenlyase subunit 7 [Escherichia coli 1827-70]
gi|310333013|gb|EFQ00227.1| formate hydrogenlyase subunit 7 [Escherichia coli 1827-70]
gi|315615107|gb|EFU95744.1| formate hydrogenlyase subunit 7 [Escherichia coli 3431]
Length = 239
Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 2 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 61
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 62 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 121
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 122 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 155
>gi|300820494|ref|ZP_07100645.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7]
gi|331669452|ref|ZP_08370298.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli TA271]
gi|331678693|ref|ZP_08379367.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli H591]
gi|300526758|gb|EFK47827.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7]
gi|331063120|gb|EGI35033.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli TA271]
gi|331073523|gb|EGI44844.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli H591]
Length = 255
Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+I+P
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIIP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|83591007|ref|YP_431016.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Moorella
thermoacetica ATCC 39073]
gi|83573921|gb|ABC20473.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Moorella
thermoacetica ATCC 39073]
Length = 252
Score = 154 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 79/151 (52%), Gaps = 7/151 (4%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
L + ++ R+ + + G C +E+ P YD ER GF ASPR +D+++
Sbjct: 10 LKAKLKNVIK--RSVYVYRVDCGGCNGCEIEIFATISPVYDPERLGFKVVASPRHADILL 67
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
G +T M R Y P+P+ V++ G+C GG +H YSV G I PVD+Y+P
Sbjct: 68 FTGPMTRAMRLPAIRAYQAAPDPKIVVAYGTCGCSGGIFHDCYSVWGGTGSIFPVDVYIP 127
Query: 158 GCPPTAEALIYG----ILLLQKKIRRVGNVK 184
GCPPT A IYG + LLQ+K++ +
Sbjct: 128 GCPPTPGATIYGLGLALDLLQQKMKGEQYTE 158
>gi|282856067|ref|ZP_06265353.1| hydrogenase-4 component I [Pyramidobacter piscolens W5455]
gi|282586088|gb|EFB91370.1| hydrogenase-4 component I [Pyramidobacter piscolens W5455]
Length = 156
Score = 154 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 54 SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
SL T C +E++ + PRYD+ER G +PR +DV++V G +T M L
Sbjct: 13 SLWVFTLNSGSCNGCDIEIVASLTPRYDIERLGLKLTGTPRHADVLLVTGPVTRFMEPKL 72
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
R++Y Q+P+P+ VI++G+CA G ++ SY++V DRIVPVD+YV GC EALI G+
Sbjct: 73 RQIYAQIPDPKVVIAVGNCATSGDVFYKSYNLVGPVDRIVPVDVYVHGCAIRPEALIEGV 132
Query: 171 LL 172
Sbjct: 133 AK 134
>gi|74313286|ref|YP_311705.1| hydrogenase activity [Shigella sonnei Ss046]
gi|73856763|gb|AAZ89470.1| hydrogenase activity [Shigella sonnei Ss046]
gi|323167106|gb|EFZ52824.1| formate hydrogenlyase subunit 7 [Shigella sonnei 53G]
Length = 255
Score = 154 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|320173428|gb|EFW48627.1| Formate hydrogenlyase subunit 7 [Shigella dysenteriae CDC 74-1112]
Length = 255
Score = 154 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|219853280|ref|YP_002467712.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanosphaerula
palustris E1-9c]
gi|219547539|gb|ACL17989.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanosphaerula
palustris E1-9c]
Length = 147
Score = 154 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 79/135 (58%), Gaps = 7/135 (5%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + C +E++ P YDLERFG +P+ +D+ +V G + + +
Sbjct: 5 KKSPWIIHYDASSCNGCDIEVLACLTPMYDLERFGIINTGNPKHADIFLVTGGVNEQNRA 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
++ +YDQMPEP+ VI++G CA GG + Y+++ G D+++PVD+Y+PGCP E +I
Sbjct: 65 VIKNIYDQMPEPKVVIALGVCATSGGVFRECYNIIGGIDKVIPVDVYLPGCPVRPEQIID 124
Query: 169 GILL----LQKKIRR 179
++ L++K R+
Sbjct: 125 SVVKSLSILEEKQRQ 139
>gi|83309305|ref|YP_419569.1| Ni,Fe-hydrogenase III small subunit [Magnetospirillum magneticum
AMB-1]
gi|82944146|dbj|BAE49010.1| Ni,Fe-hydrogenase III small subunit [Magnetospirillum magneticum
AMB-1]
Length = 178
Score = 154 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 50/120 (41%), Positives = 75/120 (62%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P YDLERFG ASPR +DV++V G +T M ALRR + PEP
Sbjct: 59 SCNGCELEIHAVNHPIYDLERFGIRFVASPRHADVLLVTGPVTRNMEEALRRTVEATPEP 118
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R++++MG C GG + SY+VV G +VPVD+++PGCPP+ ++ G+L L + + +
Sbjct: 119 RWIVAMGDCGKDGGCFAGSYAVVGGVSDVVPVDLHIPGCPPSPRQILAGLLALLETVDQK 178
>gi|16761624|ref|NP_457241.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|213052199|ref|ZP_03345077.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213426140|ref|ZP_03358890.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213648116|ref|ZP_03378169.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213855567|ref|ZP_03383807.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289823877|ref|ZP_06543483.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25298993|pir||AC0846 formate hydrogenlyase chain 7 [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16503925|emb|CAD05954.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Typhi]
Length = 255
Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|258646992|ref|ZP_05734461.1| NADH dehydrogenase I, B subunit [Dialister invisus DSM 15470]
gi|260404433|gb|EEW97980.1| NADH dehydrogenase I, B subunit [Dialister invisus DSM 15470]
Length = 156
Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + C +E++ MP YD+ERFG P+ +DV +V G + +
Sbjct: 5 RKSAWLIHYDGSSCNGCDIEVLACLMPLYDVERFGIINTGDPKHADVFLVTGGVNVQNLP 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
+R++Y+QMPEP+ V+++G+CA GG + Y+++ G D VPVD+YVPGC EA+I
Sbjct: 65 VVRQIYEQMPEPKVVVAVGTCACTGGIFKDCYNMIGGMDHAVPVDVYVPGCAARPEAIID 124
Query: 169 GILL----LQKKIRRVGNV 183
G++ L++K +
Sbjct: 125 GVVKGLGILEEKRAEYKRL 143
>gi|218548077|ref|YP_002381868.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ATCC 35469]
gi|218355618|emb|CAQ88229.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ATCC 35469]
Length = 268
Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T
Sbjct: 43 LKDIRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTR 102
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M R Y+ P+ + +S G+C GGG +H Y V G D IVPVD+++PGCPPT
Sbjct: 103 AMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLYCVWGGSDTIVPVDVWIPGCPPTPA 162
Query: 165 ALIYGIL----LLQKKIRRVGNVK 184
A I+G LLQ+KI V+
Sbjct: 163 ATIHGFAVALGLLQQKIHAEDYVE 186
>gi|269140240|ref|YP_003296941.1| hydrogenase activity [Edwardsiella tarda EIB202]
gi|267985901|gb|ACY85730.1| hydrogenase activity [Edwardsiella tarda EIB202]
gi|304560070|gb|ADM42734.1| Formate hydrogenlyase subunit 7 [Edwardsiella tarda FL6-60]
Length = 273
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 8/184 (4%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEI-THKGFLVTSVDQLVTWARTGSLMWMTFG-LAC 64
+Q I + + + DA+ + + L ++ L R+ + + G
Sbjct: 2 SQIITTPPAGALIGPRDANGQPVPITLDAQAARLKQTL--LKDIRRSAYVYRVDCGGCNG 59
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
C +E+ A P +D ERFG ASPR +D+++ G +T M R Y P+P+ VI
Sbjct: 60 CEIEIFAAISPLFDAERFGIKVVASPRHADILLFTGAVTRAMRIPAIRAYQSAPDPKIVI 119
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
S G+C GG +H Y V G D+IVPVD+Y+PGCPPT A +YG LL +K++
Sbjct: 120 SYGACGCSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLKAQ 179
Query: 181 GNVK 184
+ +
Sbjct: 180 HHSQ 183
>gi|324112980|gb|EGC06956.1| NADH ubiquinone oxidoreductase [Escherichia fergusonii B253]
gi|325496480|gb|EGC94339.1| hydrogenase 4, Fe-S subunit [Escherichia fergusonii ECD227]
Length = 255
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/144 (36%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T
Sbjct: 30 LKDIRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTR 89
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M R Y+ P+ + +S G+C GGG +H Y V G D IVPVD+++PGCPPT
Sbjct: 90 AMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLYCVWGGSDTIVPVDVWIPGCPPTPA 149
Query: 165 ALIYGIL----LLQKKIRRVGNVK 184
A I+G LLQ+KI V+
Sbjct: 150 ATIHGFAVALGLLQQKIHAEDYVE 173
>gi|332161095|ref|YP_004297672.1| hydrogenase-4 component I [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325665325|gb|ADZ41969.1| hydrogenase-4 component I [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330863809|emb|CBX73904.1| formate hydrogenlyase subunit 7 [Yersinia enterocolitica W22703]
Length = 267
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 5/141 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T
Sbjct: 33 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 92
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M + R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT
Sbjct: 93 AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 152
Query: 165 ALIYGIL----LLQKKIRRVG 181
A IYG LL++K++
Sbjct: 153 ATIYGFAVALGLLEQKLKGEE 173
>gi|90426039|ref|YP_534409.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris BisB18]
gi|90108053|gb|ABD90090.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris BisB18]
Length = 246
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/144 (36%), Positives = 80/144 (55%), Gaps = 5/144 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T
Sbjct: 17 LSNIRRSAYVYRVDCGGCNGCEIEIFAAITPIFDAERFGIKVVASPRHADILLFTGAVTR 76
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M R Y+ P+P+ V+S G+C GG +H Y V G D++VPVD+Y+PGCPPT
Sbjct: 77 AMRMPALRAYEAAPDPKIVVSYGACGCTGGIFHDLYCVWGGTDQVVPVDVYIPGCPPTPP 136
Query: 165 ALIYGIL----LLQKKIRRVGNVK 184
A IYG LL +K++ +++
Sbjct: 137 ATIYGFAVALGLLDQKLKAKTHIE 160
>gi|26249118|ref|NP_755158.1| formate hydrogenlyase subunit 7 [Escherichia coli CFT073]
gi|91212079|ref|YP_542065.1| formate hydrogenlyase subunit 7 [Escherichia coli UTI89]
gi|110642842|ref|YP_670572.1| formate hydrogenlyase-3 component G [Escherichia coli 536]
gi|117624951|ref|YP_853939.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli APEC O1]
gi|157157238|ref|YP_001464031.1| formate hydrogenlyase, subunit G [Escherichia coli E24377A]
gi|170683663|ref|YP_001744868.1| formate hydrogenlyase, subunit G [Escherichia coli SMS-3-5]
gi|191166819|ref|ZP_03028645.1| formate hydrogenlyase, subunit G [Escherichia coli B7A]
gi|191171381|ref|ZP_03032930.1| formate hydrogenlyase, subunit G [Escherichia coli F11]
gi|193065043|ref|ZP_03046118.1| formate hydrogenlyase, subunit G [Escherichia coli E22]
gi|193069668|ref|ZP_03050620.1| formate hydrogenlyase, subunit G [Escherichia coli E110019]
gi|194427855|ref|ZP_03060401.1| formate hydrogenlyase, subunit G [Escherichia coli B171]
gi|209920158|ref|YP_002294242.1| formate hydrogenlyase subunit [Escherichia coli SE11]
gi|218555263|ref|YP_002388176.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli IAI1]
gi|218559709|ref|YP_002392622.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli S88]
gi|218690843|ref|YP_002399055.1| hydrogenase 3 and formate hydrogenase complex subunit HycG
[Escherichia coli ED1a]
gi|218701211|ref|YP_002408840.1| hydrogenase 3 and formate hydrogenase complex subunit HycG
[Escherichia coli IAI39]
gi|218706213|ref|YP_002413732.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli UMN026]
gi|227888257|ref|ZP_04006062.1| hydrogenase activity [Escherichia coli 83972]
gi|237706658|ref|ZP_04537139.1| formate hydrogenlyase subunit 7 [Escherichia sp. 3_2_53FAA]
gi|256019502|ref|ZP_05433367.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Shigella sp. D9]
gi|260845362|ref|YP_003223140.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli O103:H2 str. 12009]
gi|293406211|ref|ZP_06650137.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1412]
gi|293412077|ref|ZP_06654800.1| conserved hypothetical protein [Escherichia coli B354]
gi|293449035|ref|ZP_06663456.1| hycG [Escherichia coli B088]
gi|298381948|ref|ZP_06991545.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1302]
gi|300815877|ref|ZP_07096101.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1]
gi|300899958|ref|ZP_07118161.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1]
gi|300906778|ref|ZP_07124460.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1]
gi|300922237|ref|ZP_07138363.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1]
gi|300975045|ref|ZP_07172846.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 200-1]
gi|300976821|ref|ZP_07173638.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 45-1]
gi|301027129|ref|ZP_07190498.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1]
gi|301049524|ref|ZP_07196482.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 185-1]
gi|301305390|ref|ZP_07211484.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1]
gi|301326246|ref|ZP_07219629.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1]
gi|306812403|ref|ZP_07446601.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli NC101]
gi|309795179|ref|ZP_07689598.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7]
gi|331658827|ref|ZP_08359769.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli TA206]
gi|331684332|ref|ZP_08384924.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli H299]
gi|332280624|ref|ZP_08393037.1| hydrogenase 3 and formate hydrogenase complex [Shigella sp. D9]
gi|26109525|gb|AAN81728.1|AE016765_130 Formate hydrogenlyase subunit 7 [Escherichia coli CFT073]
gi|91073653|gb|ABE08534.1| formate hydrogenlyase subunit 7 [Escherichia coli UTI89]
gi|110344434|gb|ABG70671.1| formate hydrogenlyase-3 component G [Escherichia coli 536]
gi|115514075|gb|ABJ02150.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli APEC O1]
gi|157079268|gb|ABV18976.1| formate hydrogenlyase, subunit G [Escherichia coli E24377A]
gi|170521381|gb|ACB19559.1| formate hydrogenlyase, subunit G [Escherichia coli SMS-3-5]
gi|190903190|gb|EDV62913.1| formate hydrogenlyase, subunit G [Escherichia coli B7A]
gi|190908315|gb|EDV67905.1| formate hydrogenlyase, subunit G [Escherichia coli F11]
gi|192927340|gb|EDV81959.1| formate hydrogenlyase, subunit G [Escherichia coli E22]
gi|192957031|gb|EDV87482.1| formate hydrogenlyase, subunit G [Escherichia coli E110019]
gi|194414088|gb|EDX30364.1| formate hydrogenlyase, subunit G [Escherichia coli B171]
gi|209913417|dbj|BAG78491.1| formate hydrogenlyase subunit [Escherichia coli SE11]
gi|218362031|emb|CAQ99638.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli IAI1]
gi|218366478|emb|CAR04230.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli S88]
gi|218371197|emb|CAR19028.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli IAI39]
gi|218428407|emb|CAR09332.2| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli ED1a]
gi|218433310|emb|CAR14210.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli UMN026]
gi|222034413|emb|CAP77155.1| Formate hydrogenlyase subunit 7 [Escherichia coli LF82]
gi|226899698|gb|EEH85957.1| formate hydrogenlyase subunit 7 [Escherichia sp. 3_2_53FAA]
gi|227834526|gb|EEJ44992.1| hydrogenase activity [Escherichia coli 83972]
gi|257760509|dbj|BAI32006.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli O103:H2 str. 12009]
gi|284922655|emb|CBG35743.1| formate hydrogenlyase subunit 7 [Escherichia coli 042]
gi|291322125|gb|EFE61554.1| hycG [Escherichia coli B088]
gi|291426217|gb|EFE99249.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1412]
gi|291468848|gb|EFF11339.1| conserved hypothetical protein [Escherichia coli B354]
gi|294489961|gb|ADE88717.1| formate hydrogenlyase, subunit G [Escherichia coli IHE3034]
gi|298277088|gb|EFI18604.1| formate hydrogenlyase subunit 7 [Escherichia coli FVEC1302]
gi|300298755|gb|EFJ55140.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 185-1]
gi|300308813|gb|EFJ63333.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 200-1]
gi|300356467|gb|EFJ72337.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1]
gi|300395161|gb|EFJ78699.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1]
gi|300401472|gb|EFJ85010.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1]
gi|300410007|gb|EFJ93545.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 45-1]
gi|300421367|gb|EFK04678.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1]
gi|300531806|gb|EFK52868.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1]
gi|300839310|gb|EFK67070.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1]
gi|300847091|gb|EFK74851.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1]
gi|305854441|gb|EFM54879.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli NC101]
gi|307554694|gb|ADN47469.1| formate hydrogenlyase subunit 7 [Escherichia coli ABU 83972]
gi|307625710|gb|ADN70014.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli UM146]
gi|308121150|gb|EFO58412.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7]
gi|312947248|gb|ADR28075.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli O83:H1 str. NRG 857C]
gi|315254501|gb|EFU34469.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 85-1]
gi|315289284|gb|EFU48679.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 110-3]
gi|315293724|gb|EFU53076.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 153-1]
gi|315298793|gb|EFU58047.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 16-3]
gi|320194857|gb|EFW69486.1| Formate hydrogenlyase subunit 7 [Escherichia coli WV_060327]
gi|320202369|gb|EFW76939.1| Formate hydrogenlyase subunit 7 [Escherichia coli EC4100B]
gi|323159853|gb|EFZ45824.1| formate hydrogenlyase subunit 7 [Escherichia coli E128010]
gi|323183246|gb|EFZ68643.1| formate hydrogenlyase subunit 7 [Escherichia coli 1357]
gi|323188867|gb|EFZ74152.1| formate hydrogenlyase subunit 7 [Escherichia coli RN587/1]
gi|323946400|gb|EGB42428.1| NADH ubiquinone oxidoreductase [Escherichia coli H120]
gi|323951062|gb|EGB46938.1| NADH ubiquinone oxidoreductase [Escherichia coli H252]
gi|323957069|gb|EGB52794.1| NADH ubiquinone oxidoreductase [Escherichia coli H263]
gi|324005681|gb|EGB74900.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 57-2]
gi|324013674|gb|EGB82893.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 60-1]
gi|324017032|gb|EGB86251.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 117-3]
gi|324119969|gb|EGC13847.1| NADH ubiquinone oxidoreductase [Escherichia coli E1167]
gi|331053409|gb|EGI25438.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli TA206]
gi|331077947|gb|EGI49153.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli H299]
gi|332102976|gb|EGJ06322.1| hydrogenase 3 and formate hydrogenase complex [Shigella sp. D9]
Length = 255
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|284006929|emb|CBA72200.1| hydrogenase-4 component I [Arsenophonus nasoniae]
Length = 255
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 54/173 (31%), Positives = 86/173 (49%), Gaps = 11/173 (6%)
Query: 10 IISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVE 68
+ +S + + + S + K L+ + R+ + + G C +E
Sbjct: 1 MSQFLASRDQQGMPVPVAIEESIASMKALLLKKIK------RSAYVYRVDCGGCNGCEIE 54
Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
+ P +D ERFG SPR +D+++ G +T M + R + P+P+ IS G+
Sbjct: 55 IFATLSPMFDAERFGIKVVPSPRHADILLFTGAVTRAMRTPALRAWHSAPDPKIAISYGA 114
Query: 129 CANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKI 177
C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG + L++KI
Sbjct: 115 CGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|194432976|ref|ZP_03065259.1| formate hydrogenlyase, subunit G [Shigella dysenteriae 1012]
gi|300941095|ref|ZP_07155607.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1]
gi|194418703|gb|EDX34789.1| formate hydrogenlyase, subunit G [Shigella dysenteriae 1012]
gi|300454138|gb|EFK17631.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1]
gi|323966866|gb|EGB62295.1| NADH ubiquinone oxidoreductase [Escherichia coli M863]
gi|323978671|gb|EGB73753.1| NADH ubiquinone oxidoreductase [Escherichia coli TW10509]
gi|324111344|gb|EGC05326.1| NADH ubiquinone oxidoreductase [Escherichia fergusonii B253]
gi|325496240|gb|EGC94099.1| formate hydrogenlyase, subunit G [Escherichia fergusonii ECD227]
gi|327251442|gb|EGE63128.1| formate hydrogenlyase subunit 7 [Escherichia coli STEC_7v]
gi|332087440|gb|EGI92568.1| formate hydrogenlyase subunit 7 [Shigella boydii 5216-82]
gi|332088649|gb|EGI93762.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 155-74]
Length = 255
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|307312858|ref|ZP_07592488.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W]
gi|306907293|gb|EFN37799.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W]
gi|315061995|gb|ADT76322.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli W]
gi|323377422|gb|ADX49690.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
KO11]
Length = 255
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|257064036|ref|YP_003143708.1| ech hydrogenase subunit C [Slackia heliotrinireducens DSM 20476]
gi|256791689|gb|ACV22359.1| ech hydrogenase subunit C [Slackia heliotrinireducens DSM 20476]
Length = 146
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 77/132 (58%), Gaps = 7/132 (5%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
+ S + + C +E++ A P YD ERFG +P+ +D+ ++ G++ +
Sbjct: 5 SKSPWVLHYDASSCNGCDIEVLAALSPVYDAERFGVINTGNPKHADIFVITGSVNERNID 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
++ +Y+QM EP+ V++ GSCA GG +H Y+V+ G D +PVD+YVPGC E++I
Sbjct: 65 VVKELYEQMVEPKVVVACGSCACSGGIFHDCYNVLGGVDNAIPVDVYVPGCAVRPESIID 124
Query: 169 GILL----LQKK 176
G++ L++K
Sbjct: 125 GVVEAIGILEEK 136
>gi|320186505|gb|EFW61233.1| Formate hydrogenlyase subunit 7 [Shigella flexneri CDC 796-83]
Length = 255
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|320180858|gb|EFW55781.1| Formate hydrogenlyase subunit 7 [Shigella boydii ATCC 9905]
Length = 255
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMVLGLLEQKIHARG 171
>gi|15803236|ref|NP_289268.1| hydrogenase activity [Escherichia coli O157:H7 EDL933]
gi|15832829|ref|NP_311602.1| formate hydrogenlyase subunit-7 component G [Escherichia coli
O157:H7 str. Sakai]
gi|168749956|ref|ZP_02774978.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4113]
gi|168755464|ref|ZP_02780471.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4401]
gi|168762882|ref|ZP_02787889.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4501]
gi|168768810|ref|ZP_02793817.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4486]
gi|168774749|ref|ZP_02799756.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4196]
gi|168778701|ref|ZP_02803708.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4076]
gi|168787974|ref|ZP_02812981.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC869]
gi|168800200|ref|ZP_02825207.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC508]
gi|194438988|ref|ZP_03071072.1| formate hydrogenlyase, subunit G [Escherichia coli 101-1]
gi|195938469|ref|ZP_03083851.1| formate hydrogenlyase subunit-7 component G [Escherichia coli
O157:H7 str. EC4024]
gi|208806906|ref|ZP_03249243.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4206]
gi|208812606|ref|ZP_03253935.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4045]
gi|208818509|ref|ZP_03258829.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4042]
gi|209396735|ref|YP_002272182.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4115]
gi|217327730|ref|ZP_03443813.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
TW14588]
gi|253772426|ref|YP_003035257.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162650|ref|YP_003045758.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli B str. REL606]
gi|254794659|ref|YP_003079496.1| hydrogenase 3 and formate hydrogenase complex subunit HycG
[Escherichia coli O157:H7 str. TW14359]
gi|260856826|ref|YP_003230717.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli O26:H11 str. 11368]
gi|260869394|ref|YP_003235796.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli O111:H- str. 11128]
gi|261226013|ref|ZP_05940294.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli O157:H7 str. FRIK2000]
gi|261256729|ref|ZP_05949262.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli O157:H7 str. FRIK966]
gi|291284046|ref|YP_003500864.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str.
CB9615]
gi|293415969|ref|ZP_06658609.1| formate hydrogenlyase subunit 7 [Escherichia coli B185]
gi|297519859|ref|ZP_06938245.1| Formate hydrogenlyase, subunit G [Escherichia coli OP50]
gi|300919245|ref|ZP_07135768.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1]
gi|300930577|ref|ZP_07145969.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1]
gi|331654196|ref|ZP_08355196.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli M718]
gi|331674227|ref|ZP_08374987.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli TA280]
gi|12517167|gb|AAG57826.1|AE005500_5 hydrogenase activity [Escherichia coli O157:H7 str. EDL933]
gi|13363046|dbj|BAB36998.1| formate hydrogenlyase subunit-7 component G [Escherichia coli
O157:H7 str. Sakai]
gi|187769518|gb|EDU33362.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4196]
gi|188015810|gb|EDU53932.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4113]
gi|189003614|gb|EDU72600.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4076]
gi|189357334|gb|EDU75753.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4401]
gi|189362033|gb|EDU80452.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4486]
gi|189366866|gb|EDU85282.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4501]
gi|189372104|gb|EDU90520.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC869]
gi|189377479|gb|EDU95895.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC508]
gi|194422109|gb|EDX38112.1| formate hydrogenlyase, subunit G [Escherichia coli 101-1]
gi|208726707|gb|EDZ76308.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4206]
gi|208733883|gb|EDZ82570.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4045]
gi|208738632|gb|EDZ86314.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4042]
gi|209158135|gb|ACI35568.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
EC4115]
gi|209761908|gb|ACI79266.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
gi|209761910|gb|ACI79267.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
gi|209761912|gb|ACI79268.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
gi|209761914|gb|ACI79269.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
gi|209761916|gb|ACI79270.1| formate hydrogenlyase subunit-7 component G [Escherichia coli]
gi|217320097|gb|EEC28522.1| formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
TW14588]
gi|242378276|emb|CAQ33051.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit,
subunit of hydrogenase 3 and formate hydrogenlyase
complex [Escherichia coli BL21(DE3)]
gi|253323470|gb|ACT28072.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974551|gb|ACT40222.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli B str. REL606]
gi|253978718|gb|ACT44388.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli BL21(DE3)]
gi|254594059|gb|ACT73420.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli O157:H7 str. TW14359]
gi|257755475|dbj|BAI26977.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli O26:H11 str. 11368]
gi|257765750|dbj|BAI37245.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli O111:H- str. 11128]
gi|290763919|gb|ADD57880.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str.
CB9615]
gi|291432158|gb|EFF05140.1| formate hydrogenlyase subunit 7 [Escherichia coli B185]
gi|300413690|gb|EFJ97000.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1]
gi|300461519|gb|EFK25012.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1]
gi|320189051|gb|EFW63710.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str.
EC1212]
gi|320640362|gb|EFX09901.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
G5101]
gi|320645909|gb|EFX14890.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H- str.
493-89]
gi|320651209|gb|EFX19644.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H- str. H
2687]
gi|320656759|gb|EFX24647.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320662302|gb|EFX29699.1| Formate hydrogenlyase, subunit G [Escherichia coli O55:H7 str. USDA
5905]
gi|320667353|gb|EFX34311.1| Formate hydrogenlyase, subunit G [Escherichia coli O157:H7 str.
LSU-61]
gi|323154935|gb|EFZ41127.1| formate hydrogenlyase subunit 7 [Escherichia coli EPECa14]
gi|323941450|gb|EGB37633.1| NADH ubiquinone oxidoreductase [Escherichia coli E482]
gi|323960621|gb|EGB56247.1| NADH ubiquinone oxidoreductase [Escherichia coli H489]
gi|323971552|gb|EGB66785.1| NADH ubiquinone oxidoreductase [Escherichia coli TA007]
gi|326339209|gb|EGD63024.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str.
1044]
gi|326342908|gb|EGD66676.1| Formate hydrogenlyase subunit 7 [Escherichia coli O157:H7 str.
1125]
gi|331047578|gb|EGI19655.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli M718]
gi|331068321|gb|EGI39716.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli TA280]
Length = 255
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|303241790|ref|ZP_07328286.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acetivibrio
cellulolyticus CD2]
gi|302590671|gb|EFL60423.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acetivibrio
cellulolyticus CD2]
Length = 154
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 78/141 (55%), Gaps = 10/141 (7%)
Query: 54 SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S + + C +E++ P YD ERFG +P+ +D+ +V G++ + +
Sbjct: 7 SPWILHYDASSCNGCDIEVLACLTPMYDAERFGIINTGNPKHADIFVVTGSVNEQNIDVI 66
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
+ +Y+QMP+P+ V+++G CA GG + Y++ G D+++PVD+YV GC EA+I GI
Sbjct: 67 KNLYNQMPDPKVVVAVGICAATGGIFSECYNIQGGIDKVLPVDVYVAGCAARPEAIIDGI 126
Query: 171 LLL-------QKKIRRVGNVK 184
+ KK++ ++K
Sbjct: 127 VQAVGILEEKHKKMKNGKSLK 147
>gi|16130626|ref|NP_417199.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli str. K-12 substr. MG1655]
gi|89109506|ref|AP_003286.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli str. K-12 substr. W3110]
gi|157162165|ref|YP_001459483.1| formate hydrogenlyase, subunit G [Escherichia coli HS]
gi|170019035|ref|YP_001723989.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
ATCC 8739]
gi|170082295|ref|YP_001731615.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli str. K-12 substr. DH10B]
gi|188491683|ref|ZP_02998953.1| NADH ubiquinone oxidoreductase [Escherichia coli 53638]
gi|238901856|ref|YP_002927652.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli BW2952]
gi|254037758|ref|ZP_04871816.1| hydrogenase 3 and formate hydrogenase complex [Escherichia sp.
1_1_43]
gi|256024774|ref|ZP_05438639.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia sp. 4_1_40B]
gi|300947003|ref|ZP_07161229.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1]
gi|300954959|ref|ZP_07167371.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1]
gi|301027398|ref|ZP_07190737.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1]
gi|301645301|ref|ZP_07245251.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1]
gi|307139406|ref|ZP_07498762.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli H736]
gi|331643403|ref|ZP_08344534.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli H736]
gi|2506958|sp|P16433|HYCG_ECOLI RecName: Full=Formate hydrogenlyase subunit 7; Short=FHL subunit 7;
AltName: Full=Hydrogenase-3 component G
gi|882612|gb|AAA69229.1| formate hydrogenlyase subunit 7 [Escherichia coli str. K-12 substr.
MG1655]
gi|1789074|gb|AAC75761.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli str. K-12 substr. MG1655]
gi|85675540|dbj|BAE76796.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli str. K12 substr. W3110]
gi|157067845|gb|ABV07100.1| formate hydrogenlyase, subunit G [Escherichia coli HS]
gi|169753963|gb|ACA76662.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
ATCC 8739]
gi|169890130|gb|ACB03837.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli str. K-12 substr. DH10B]
gi|188486882|gb|EDU61985.1| NADH ubiquinone oxidoreductase [Escherichia coli 53638]
gi|226839382|gb|EEH71403.1| hydrogenase 3 and formate hydrogenase complex [Escherichia sp.
1_1_43]
gi|238861454|gb|ACR63452.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli BW2952]
gi|260448231|gb|ACX38653.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
DH1]
gi|299879312|gb|EFI87523.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1]
gi|300318094|gb|EFJ67878.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1]
gi|300453390|gb|EFK17010.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1]
gi|301076419|gb|EFK91225.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1]
gi|309703078|emb|CBJ02410.1| formate hydrogenlyase subunit 7 [Escherichia coli ETEC H10407]
gi|315137326|dbj|BAJ44485.1| hydrogenase 3 and formate hydrogenase complex [Escherichia coli
DH1]
gi|323172993|gb|EFZ58624.1| formate hydrogenlyase subunit 7 [Escherichia coli LT-68]
gi|323935725|gb|EGB32039.1| NADH ubiquinone oxidoreductase [Escherichia coli E1520]
gi|331036874|gb|EGI09098.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli H736]
gi|332344600|gb|AEE57934.1| formate hydrogenlyase subunit 7 [Escherichia coli UMNK88]
Length = 255
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|254674105|emb|CBA09889.1| NADH dehydrogenase I chain B [Neisseria meningitidis alpha275]
Length = 111
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 74/94 (78%), Positives = 86/94 (91%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI 149
RQ+D+MIVAGTLTNKMA ALRRVYDQ+ EPR+V+SMGSCANGGGYYHYSYSVVRG DR+
Sbjct: 14 QRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRV 73
Query: 150 VPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
VPVD+YVPGCPPTAEALIYG++ LQ+KI+R +
Sbjct: 74 VPVDVYVPGCPPTAEALIYGLIQLQQKIKRTSTI 107
>gi|149280569|ref|ZP_01886685.1| NADH dehydrogenase I, chain B [Pedobacter sp. BAL39]
gi|149228684|gb|EDM34087.1| NADH dehydrogenase I, chain B [Pedobacter sp. BAL39]
Length = 128
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/110 (46%), Positives = 75/110 (68%), Gaps = 2/110 (1%)
Query: 73 SMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
YD RFG SPRQ+D+++V GT+ KM+ L++VY QM EPR+VI++G+CA+
Sbjct: 1 MGSHYDFGRFGSERLSFSPRQADLLMVMGTIAKKMSPVLKQVYLQMAEPRWVIAVGACAS 60
Query: 132 GGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
GG + +YSV++G D I+PVD+YVPGCPP EA++ G +Q+ +R
Sbjct: 61 SGGIF-DTYSVLQGIDEIIPVDVYVPGCPPRPEAILDGFGKIQELVRNES 109
>gi|205353791|ref|YP_002227592.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205273572|emb|CAR38559.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326628899|gb|EGE35242.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 255
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 23 DADFSRISSEIT-HKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLE 80
D + I + +T + L R+ + + G C +E+ P +D E
Sbjct: 7 PRDANGIPAPMTVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
RFG SPR +D+++ G +T M S R + P+P+ IS G+C N GG +H Y
Sbjct: 67 RFGIKVVPSPRHADILLFTGAVTRAMRSPELRAWQSAPDPKICISYGACGNSGGIFHDLY 126
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKI 177
V G D+IVPVD+Y+PGCPPT A +YG + L++KI
Sbjct: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|145298794|ref|YP_001141635.1| hydrogenase-4 component I [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142851566|gb|ABO89887.1| hydrogenase-4 component I [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 271
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Query: 40 VTSVDQ--LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
+T + + L R+ + + G C +E+ P +D ERFG ASPR +D++
Sbjct: 27 ITKLKKTLLKDIRRSAYVYRVDCGGCNACEIEIFATITPLFDAERFGIKVVASPRHADIL 86
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV 156
+ G +T M R Y+ P+P+ I+ G+C GG +H Y V G D+IVPVD+Y+
Sbjct: 87 LFTGAVTRAMRVPALRAYEAAPDPKICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYI 146
Query: 157 PGCPPTAEALIYGI 170
PGCPPT A IYG
Sbjct: 147 PGCPPTPAATIYGF 160
>gi|29143108|ref|NP_806450.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|29138741|gb|AAO70310.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 255
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGVVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|312965023|ref|ZP_07779263.1| formate hydrogenlyase subunit 7 [Escherichia coli 2362-75]
gi|331648437|ref|ZP_08349525.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli M605]
gi|281179722|dbj|BAI56052.1| formate hydrogenlyase subunit [Escherichia coli SE15]
gi|312290579|gb|EFR18459.1| formate hydrogenlyase subunit 7 [Escherichia coli 2362-75]
gi|331042184|gb|EGI14326.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli M605]
Length = 255
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|170765639|ref|ZP_02900450.1| formate hydrogenlyase, subunit G [Escherichia albertii TW07627]
gi|170124785|gb|EDS93716.1| formate hydrogenlyase, subunit G [Escherichia albertii TW07627]
Length = 255
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|318604974|emb|CBY26472.1| formate hydrogenlyase subunit 7 [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 267
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 5/141 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T
Sbjct: 33 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 92
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M + R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT
Sbjct: 93 AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 152
Query: 165 ALIYGIL----LLQKKIRRVG 181
A IYG LL++K++
Sbjct: 153 ATIYGFAVALGLLEQKLKGEE 173
>gi|91978313|ref|YP_570972.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris BisB5]
gi|91684769|gb|ABE41071.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris BisB5]
Length = 177
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/124 (36%), Positives = 73/124 (58%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ S YD+ERFG ASPR +DV++V G +T+ M ALR Y+ +P P
Sbjct: 54 SCNGCELEIHALSNAYYDVERFGLRFVASPRHADVLMVTGPVTHNMREALRLTYEAVPGP 113
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
++V++ G CA GG + SY++ G ++PVD+++PGCPP+ ++ G+L L +
Sbjct: 114 KWVVATGDCAKDGGCFAGSYAITGGVSAVIPVDLHIPGCPPSPVQILRGLLALLDSVSAR 173
Query: 181 GNVK 184
+
Sbjct: 174 EISR 177
>gi|322831876|ref|YP_004211903.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rahnella sp. Y9602]
gi|321167077|gb|ADW72776.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rahnella sp. Y9602]
Length = 265
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 6/163 (3%)
Query: 22 VDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDL 79
D + + +T + L+ R + ++ C C +E+ A P +D
Sbjct: 7 APRDENGLPVPVTLDESIAKLKSTLLHSIRRSAYVYRVDCGGCNGCEIEIFAAISPLFDA 66
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
ERFG SPR +D+++ G +T M R +D P+P+ IS G+C N GG +H
Sbjct: 67 ERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPDPKICISYGACGNSGGIFHDL 126
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIR 178
Y V G D+IVPVD+Y+PGCPPT A IYG + L +KI+
Sbjct: 127 YCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKIK 169
>gi|189218530|ref|YP_001939171.1| formate hydrogenlyase subunit 7 [Methylacidiphilum infernorum V4]
gi|161075799|gb|ABX56647.1| putative formate hydrogenlyase [Methylacidiphilum infernorum V4]
gi|189185388|gb|ACD82573.1| Formate hydrogenlyase subunit 7 [Methylacidiphilum infernorum V4]
Length = 177
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 73/115 (63%), Gaps = 1/115 (0%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P YD+ERFG ASPR +D+++V G +T M AL+R YD MP P
Sbjct: 61 SCNGCELEIHALNNPFYDIERFGIRFVASPRHADLLLVTGPVTKNMVEALKRTYDCMPHP 120
Query: 121 RYVISMGSCANGGGYYHYSYSVVR-GCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
++V++ G CA G G + SY+VV+ G + I+PVD+ + GCPPT L+ G++ L
Sbjct: 121 KWVVAAGDCALGRGVFSQSYAVVKEGVEAIIPVDLRIDGCPPTPLDLLRGLVYLL 175
>gi|294646453|ref|ZP_06724094.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CC
2a]
gi|292638224|gb|EFF56601.1| NADH-quinone oxidoreductase, B subunit [Bacteroides ovatus SD CC
2a]
Length = 115
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 53/95 (55%), Positives = 75/95 (78%)
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC 146
RASPRQ+D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + SY VV G
Sbjct: 2 RASPRQADMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGV 61
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVG 181
D+I+PVD+Y+PGCPP EA YG++ LQ+K++
Sbjct: 62 DKILPVDVYIPGCPPRPEAFYYGMMQLQRKVKIEK 96
>gi|90410736|ref|ZP_01218751.1| hydrogenase-4 component I [Photobacterium profundum 3TCK]
gi|90328367|gb|EAS44665.1| hydrogenase-4 component I [Photobacterium profundum 3TCK]
Length = 277
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/129 (40%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 44 DQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
D L+ R + ++ C C +E+ A+ P +D ERFG ASPR +D+++ G
Sbjct: 29 DALIKQIRRSAYVYRVDCGGCNGCEIEIFAATTPVFDTERFGIKVVASPRHADILLFTGA 88
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+T M + R Y+ P+P+ V+S G+C GG +H Y V G D+IVPVD+Y+PGCPP
Sbjct: 89 VTRAMRAPALRAYEAAPDPKIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148
Query: 162 TAEALIYGI 170
T A IYG
Sbjct: 149 TPAATIYGF 157
>gi|150401363|ref|YP_001325129.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
aeolicus Nankai-3]
gi|150014066|gb|ABR56517.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
aeolicus Nankai-3]
Length = 246
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/112 (40%), Positives = 67/112 (59%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C ++ + P YDL RFG ASPR +D +++ G +T M AL + YD P P
Sbjct: 132 GCNACDADINVLNTPVYDLSRFGIKFVASPRHADGLVITGPVTKNMELALMKTYDATPSP 191
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
++VI++G+CA GG + + VV G D+I+PVD+Y+PGCPP +Y +
Sbjct: 192 KFVIAVGTCAISGGIFRENEEVVGGVDKILPVDLYIPGCPPHPFTNLYAFVK 243
>gi|284162674|ref|YP_003401297.1| NADH-quinone oxidoreductase subunit beta [Archaeoglobus profundus
DSM 5631]
gi|284012671|gb|ADB58624.1| NADH-quinone oxidoreductase, B subunit [Archaeoglobus profundus DSM
5631]
Length = 709
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 58/136 (42%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 46 LVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
L W SL + ACC VE+ A YD ER G RQ++++IV G +T K
Sbjct: 2 LKEWGTKWSLWPVHLVTACCGVELAHAYACGYDAERIGSLNYGICRQTNLIIVEGAITRK 61
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
MA LR ++QMP P++VI MG+C GG + SY +VR D + GCPPT EA
Sbjct: 62 MARVLRITWEQMPNPKFVIVMGACGIKGGLFKNSYHMVRPWDVVPVDVFVP-GCPPTPEA 120
Query: 166 LIYGILLLQKKIRRVG 181
LI GI+ LQKKI
Sbjct: 121 LIRGIVALQKKIEGKE 136
>gi|110806654|ref|YP_690174.1| hydrogenase activity [Shigella flexneri 5 str. 8401]
gi|110616202|gb|ABF04869.1| hydrogenase activity [Shigella flexneri 5 str. 8401]
Length = 255
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TMDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|256380641|ref|YP_003104301.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM
43827]
gi|255924944|gb|ACU40455.1| NADH-quinone oxidoreductase, B subunit [Actinosynnema mirum DSM
43827]
Length = 137
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 57/132 (43%), Positives = 84/132 (63%)
Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
+ W T + + GLACC VE+M A +DL+ G P S ++ V++V+GT+T+ M
Sbjct: 6 LDWGTTYRVTVLDLGLACCGVEVMAALEGGHDLDALGVDPVRSAGEAHVLVVSGTVTDVM 65
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
A+ Y +MPEPRYV+S+G+C+N GG Y SYSV +G D+ +PV + VPGCPP EAL
Sbjct: 66 LPAVLAAYQEMPEPRYVLSVGACSNTGGPYWDSYSVTKGIDQALPVHVAVPGCPPRPEAL 125
Query: 167 IYGILLLQKKIR 178
+ G+ L + +
Sbjct: 126 LEGLAALHRMVS 137
>gi|157954631|gb|ABW05548.1| formate hydrogenlyase subunit H [Thermococcus litoralis DSM 5473]
Length = 256
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 17/145 (11%)
Query: 53 GSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
S+ C +E++ P YD+ER G ++PR + ++V G LT + +
Sbjct: 4 RSVWVFHLNTGACNGCDIEILDVLTPYYDVERLGVKLVSTPRHAHALLVTGPLTRQSYYS 63
Query: 110 LRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSV-------------VRGCDRIVPVDIY 155
+R Y+ M P+PR VI++G+CA GG ++ SY+V G +PVD+Y
Sbjct: 64 AKRAYEAMPPKPRIVIAIGTCACSGGIFYNSYAVRRESERLGLEYPRAGGTSEFLPVDVY 123
Query: 156 VPGCPPTAEALIYGILLLQKKIRRV 180
+PGCPP E ++YG+ LL R
Sbjct: 124 IPGCPPRPEEILYGLALLLGVAERK 148
>gi|271501147|ref|YP_003334172.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii
Ech586]
gi|270344702|gb|ACZ77467.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii
Ech586]
Length = 262
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 51/126 (40%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T
Sbjct: 30 LKDIKRSAYVYRVDCGGCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M + R Y+ P+P+ IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT
Sbjct: 90 AMRTPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 149
Query: 165 ALIYGI 170
A IYG
Sbjct: 150 ATIYGF 155
>gi|317054477|ref|YP_004118502.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pantoea sp. At-9b]
gi|316952472|gb|ADU71946.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pantoea sp. At-9b]
Length = 254
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 54/161 (33%), Positives = 82/161 (50%), Gaps = 6/161 (3%)
Query: 23 DADFSRISSEIT-HKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLE 80
D + + ++ + L R+ + + G C +E+ A P +D E
Sbjct: 7 PRDANGLPVPVSVEESIASLKASLLKKIKRSAYVYRVDCGGCNGCEIEIFAALTPLFDAE 66
Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
RFG SPR +D+++ G +T M S R + P+P+ IS G+C N GG +H Y
Sbjct: 67 RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKI 177
V G D+IVPVD+Y+PGCPPT A +YG + L++KI
Sbjct: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|295097300|emb|CBK86390.1| Ni,Fe-hydrogenase III small subunit [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 255
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|330448643|ref|ZP_08312291.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328492834|dbj|GAA06788.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 277
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 44 DQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
D L+ R + ++ C C +E+ A+ P +D ERFG ASPR +D+++ G
Sbjct: 29 DALIKQIRRSAYVYRVDCGGCNACEIEIFAATTPVFDAERFGIKVVASPRHADILLFTGA 88
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+T M + R Y+ P+P+ VIS G+C GG +H Y V G D+IVPVD+Y+PGCPP
Sbjct: 89 VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148
Query: 162 TAEALIYGIL----LLQKKIRRV 180
T A IYG LL +K++
Sbjct: 149 TPAATIYGFAVALGLLDQKLKAK 171
>gi|312880265|ref|ZP_07740065.1| Membrane bound hydrogenase subunit mbhJ [Aminomonas paucivorans DSM
12260]
gi|310783556|gb|EFQ23954.1| Membrane bound hydrogenase subunit mbhJ [Aminomonas paucivorans DSM
12260]
Length = 153
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
Query: 53 GSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
SL C +E++ PRYD+ER G SPR +D ++V G +T+ M
Sbjct: 12 RSLWVFHCNSGSCNGCDIEIVATLTPRYDIERLGMKLVGSPRHADALLVTGPVTHYMVER 71
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
++R++ Q+P+P+ VI +G+C G ++ SY++ DR++PVD+YV GCPP EA+I G
Sbjct: 72 VKRIHAQIPDPKVVICVGNCGCSGDVFYKSYNLEGPVDRVLPVDVYVHGCPPRPEAMIDG 131
Query: 170 ILLLQKKIRRVGN 182
+ + R
Sbjct: 132 VAQAVALLERRRA 144
>gi|288933891|ref|YP_003437950.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Klebsiella variicola
At-22]
gi|288888620|gb|ADC56938.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Klebsiella variicola
At-22]
Length = 255
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|21227166|ref|NP_633088.1| formate hydrogenlyase subunit 7 [Methanosarcina mazei Go1]
gi|20905501|gb|AAM30760.1| Formate hydrogenlyase subunit 7 [Methanosarcina mazei Go1]
Length = 170
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 51/113 (45%), Positives = 75/113 (66%)
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
+E+ P YD+ERFG + ASPR +DV++V G +T MA A ++ Y+ MP P+YVI++
Sbjct: 58 MEISNLGNPHYDVERFGISFVASPRHADVLLVTGAVTLNMAEAAKKTYEAMPYPKYVIAV 117
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
G A GG Y SY+V+ G D+I+PVD+ +PG PP+ + ++ GI L KK R
Sbjct: 118 GDDACDGGIYKGSYAVLGGVDKILPVDVKIPGNPPSPKEILQGIFALVKKARE 170
>gi|41686|emb|CAA35552.1| hycG [Escherichia coli]
gi|1093500|prf||2104213G hycG gene
Length = 255
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFGTLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|313683183|ref|YP_004060921.1| ech hydrogenase subunit c [Sulfuricurvum kujiense DSM 16994]
gi|313156043|gb|ADR34721.1| ech hydrogenase subunit C [Sulfuricurvum kujiense DSM 16994]
Length = 173
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 3/135 (2%)
Query: 51 RTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R S + + C +E++ A P+YDLERFG +P+QSD+ +V G +T +
Sbjct: 8 RKKSPWVLHYNAGSCNGCDIEILAALSPKYDLERFGVINTGNPKQSDIFLVTGPVTYRSR 67
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
L +Y Q+PEP+ V+++GSC GG + Y+V G DR +PVD+YVPGC + + +I
Sbjct: 68 ERLVELYSQIPEPKVVVAVGSCTTTGGVFRGMYNVEDGIDRYIPVDVYVPGCASSPQLII 127
Query: 168 YGILLLQKKIRRVGN 182
++ + +
Sbjct: 128 DALVKAGEILESKSK 142
>gi|117617723|ref|YP_857018.1| hydrogenase-4 component I [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
gi|117559130|gb|ABK36078.1| hydrogenase-4 component I [Aeromonas hydrophila subsp. hydrophila
ATCC 7966]
Length = 271
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ P +D ERFG ASPR +D+++ G +T M
Sbjct: 40 RSAYVYRVDCGGCNACEIEIFATITPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVP 99
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+P+ I+ G+C GG +H Y V G D+IVPVD+Y+PGCPPT A IYG
Sbjct: 100 ALRAYEAAPDPKICIAYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYG 159
Query: 170 IL----LLQKKIRRVG 181
LL++K++
Sbjct: 160 FAVALGLLEQKLKATS 175
>gi|152971578|ref|YP_001336687.1| hypothetical protein KPN_03056 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206580829|ref|YP_002236935.1| formate hydrogenlyase, subunit G [Klebsiella pneumoniae 342]
gi|238896176|ref|YP_002920912.1| hydrogenase 3 small subunit [Klebsiella pneumoniae NTUH-K2044]
gi|290511028|ref|ZP_06550397.1| formate hydrogenlyase subunit 7 hycG [Klebsiella sp. 1_1_55]
gi|150956427|gb|ABR78457.1| hypothetical protein KPN_03056 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206569887|gb|ACI11663.1| formate hydrogenlyase, subunit G [Klebsiella pneumoniae 342]
gi|238548494|dbj|BAH64845.1| hydrogenase 3 small subunit [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|289776021|gb|EFD84020.1| formate hydrogenlyase subunit 7 hycG [Klebsiella sp. 1_1_55]
Length = 255
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|315180292|gb|ADT87206.1| hydrogenase-4 component I [Vibrio furnissii NCTC 11218]
Length = 272
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 53/137 (38%), Positives = 79/137 (57%), Gaps = 5/137 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
+ R+ + + G C +E+ A+ P YD ERFG ASPR +D+++ G +T
Sbjct: 32 IKQIKRSAYVYRVDCGGCNACEIEIFAATTPVYDTERFGIKVVASPRHADILLFTGAVTR 91
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M + R Y+ P+P+ V+S G+C GG +H Y V G D+IVPVD+Y+PGCPPT
Sbjct: 92 AMRAPALRAYEAAPDPKIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 151
Query: 165 ALIYGIL----LLQKKI 177
A +YG LL++K+
Sbjct: 152 ATLYGFAVALGLLEQKM 168
>gi|296104395|ref|YP_003614541.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295058854|gb|ADF63592.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 255
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVEESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSTPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|90578223|ref|ZP_01234034.1| hydrogenase-4 component I [Vibrio angustum S14]
gi|90441309|gb|EAS66489.1| hydrogenase-4 component I [Vibrio angustum S14]
Length = 277
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Query: 44 DQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
D L+ R + ++ C C +E+ A+ P +D ERFG ASPR +D+++ G
Sbjct: 29 DALIKQIRRSAYVYRVDCGGCNACEIEIFAATTPVFDTERFGIKVVASPRHADILLFTGA 88
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+T M + R Y+ P+P+ VIS G+C GG +H Y V G D+IVPVD+Y+PGCPP
Sbjct: 89 VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148
Query: 162 TAEALIYGIL----LLQKKIRRV 180
T A IYG LL +K++
Sbjct: 149 TPAATIYGFAVALGLLDQKLKAK 171
>gi|238761067|ref|ZP_04622044.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638]
gi|238761320|ref|ZP_04622296.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638]
gi|238700294|gb|EEP93035.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638]
gi|238700547|gb|EEP93287.1| Formate hydrogenlyase subunit 7 [Yersinia kristensenii ATCC 33638]
Length = 254
Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T
Sbjct: 19 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTR 78
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M + R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT
Sbjct: 79 AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 138
Query: 165 ALIYGIL----LLQKKIRRV 180
A IYG LL++K++
Sbjct: 139 ATIYGFAVALGLLEQKLKAE 158
>gi|261342161|ref|ZP_05970019.1| hydrogenase-4 component I [Enterobacter cancerogenus ATCC 35316]
gi|288315494|gb|EFC54432.1| hydrogenase-4 component I [Enterobacter cancerogenus ATCC 35316]
Length = 255
Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 6/161 (3%)
Query: 23 DADFSRISSEIT-HKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLE 80
D + I +T + L R+ + + G C +E+ P +D E
Sbjct: 7 PRDDNGIPVPMTVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAE 66
Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY 140
RFG SPR +D+++ G +T M S R + P+P+ IS G+C N GG +H Y
Sbjct: 67 RFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLY 126
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKI 177
V G D+IVPVD+Y+PGCPPT A +YG + L++KI
Sbjct: 127 CVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|213417095|ref|ZP_03350239.1| formate hydrogenlyase subunit 7 [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 229
Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|152992439|ref|YP_001358160.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1]
gi|151424300|dbj|BAF71803.1| NADH-quinone oxidoreductase, chain B [Sulfurovum sp. NBC37-1]
Length = 140
Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 53/123 (43%), Positives = 84/123 (68%)
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
F CC++EM A PRYD ER+G+ P +PRQ+DV+++ G ++ K+ AL R Y QMP
Sbjct: 3 HFCTGCCSLEMAAAMGPRYDWERYGYMPTPTPRQADVLMITGLVSKKILPALLRTYAQMP 62
Query: 119 EPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
EP+YV+++G+C+ GG Y+ S SV++ I+P D+++ GCPP EA+I G+ +++KI+
Sbjct: 63 EPKYVVALGACSFDGGPYNDSLSVIKNPTEILPADVFIAGCPPKPEAIIEGLEQVKQKIK 122
Query: 179 RVG 181
Sbjct: 123 NKE 125
>gi|282163150|ref|YP_003355535.1| Ech hydrogenase subunit C [Methanocella paludicola SANAE]
gi|282155464|dbj|BAI60552.1| Ech hydrogenase subunit C [Methanocella paludicola SANAE]
Length = 156
Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 7/141 (4%)
Query: 46 LVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
L +R S + G C +E++ PRYD+ RFG +P+ +DVM+V G +
Sbjct: 3 LTEISRKKSPWVIHVGTGGCNGCDLEILACLTPRYDVSRFGVMSTGNPKHADVMLVVGPV 62
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T K ++ +YDQMP+P+ VIS+G+CA+ GG Y Y G D++VPVD+YVPGC
Sbjct: 63 TIKYKEIIKNLYDQMPDPKVVISVGTCASTGGIYQGCYGHCGGVDKVVPVDVYVPGCNVR 122
Query: 163 AEALIYGILL----LQKKIRR 179
EA+I G++L L +K R+
Sbjct: 123 PEAVIDGLVLALDILNEKERK 143
>gi|82545206|ref|YP_409153.1| hydrogenase activity [Shigella boydii Sb227]
gi|81246617|gb|ABB67325.1| hydrogenase activity [Shigella boydii Sb227]
gi|332092087|gb|EGI97165.1| formate hydrogenlyase subunit 7 [Shigella boydii 3594-74]
Length = 255
Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L +KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLVQKIHARG 171
>gi|324497290|gb|ADY39445.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [bacterium
enrichment culture clone P24-9H]
Length = 255
Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|14521670|ref|NP_127146.1| hydrogenase-4 component i [Pyrococcus abyssi GE5]
gi|5458889|emb|CAB50376.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
[Pyrococcus abyssi GE5]
Length = 271
Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 19/150 (12%)
Query: 51 RTG-SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
R SL C +E++ P YDLER G +PR +D +++ G LT +
Sbjct: 2 RKFKSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQT 61
Query: 107 ASALRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVV-------------RGCDRIVPV 152
A+++ Y+ M P+PR V+++G+CA GG ++ SY++ G + +VPV
Sbjct: 62 RMAIKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPV 121
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
D+Y+PGCPP+ E ++YG+ L I+
Sbjct: 122 DMYIPGCPPSPEEILYGLAQLLG-IKEKRM 150
>gi|148791384|gb|ABR12484.1| hydrogenase 3 small subunit [Klebsiella oxytoca]
Length = 255
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|260913690|ref|ZP_05920166.1| hydrogenase-4 component I [Pasteurella dagmatis ATCC 43325]
gi|260632229|gb|EEX50404.1| hydrogenase-4 component I [Pasteurella dagmatis ATCC 43325]
Length = 254
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 77/143 (53%), Gaps = 5/143 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ P +D ERFG ASPR +D+++ G +T
Sbjct: 26 LKDIQRSAYVYRVDCGGCNGCEIEIFSTITPVFDAERFGIKVVASPRHADILLFTGAVTR 85
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M + R Y+ P+P+ +S G+C GG +H Y V G D+IVP+D+Y+PGCPPT
Sbjct: 86 AMLAPALRAYEAAPDPKICVSYGACGCSGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 145
Query: 165 ALIYGILL----LQKKIRRVGNV 183
A IYG + L +K++ +
Sbjct: 146 ATIYGFAMALGLLDQKLKGKQEI 168
>gi|295099918|emb|CBK89007.1| ech hydrogenase subunit C [Eubacterium cylindroides T2-87]
Length = 143
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 77/133 (57%), Gaps = 3/133 (2%)
Query: 52 TGSLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + C +E++ +MPR+D+ERFG +P +D++++ G + + A
Sbjct: 5 KKSPWMLHHDASSCNGCDIEVLACTMPRFDIERFGIINTGNPFHADILLITGGVNAQSAE 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
++++Y QMP P+ V+++G CA GG + Y+++ G D+++PVD+YVPGC +++I
Sbjct: 65 VVKQIYSQMPHPKVVVAVGICACTGGVFKDCYNILGGVDKVIPVDVYVPGCAARPQSIID 124
Query: 169 GILLLQKKIRRVG 181
G+L + +
Sbjct: 125 GVLKAVDILEKKR 137
>gi|154149575|ref|YP_001403193.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
Methanoregula boonei 6A8]
gi|153998127|gb|ABS54550.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoregula
boonei 6A8]
Length = 163
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 3/122 (2%)
Query: 54 SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S + + C +E++ P YD+ERFG +P+ +D+ +V G++ + +
Sbjct: 7 SPWIIHYDASSCNGCDIEILACLTPMYDVERFGIINTGNPKHADIFVVTGSVNEQNKYVI 66
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
R +YDQMP+P+ V+++G CA GG + Y+V G D I+PVD+YVPGC E++I GI
Sbjct: 67 RNIYDQMPDPKVVVAIGICATSGGIFRECYNVAGGIDTIIPVDVYVPGCAARPESIIDGI 126
Query: 171 LL 172
+
Sbjct: 127 VK 128
>gi|307265664|ref|ZP_07547217.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
gi|306919308|gb|EFN49529.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
Length = 155
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 86/140 (61%), Gaps = 7/140 (5%)
Query: 52 TGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + + C +E++ P YD+ERFG +P+ +D+++V GT+ +K
Sbjct: 12 KKSPWVLHYNCSSCNGCDIEILACMTPLYDMERFGMVNVGNPKHADILVVTGTVNHKNKE 71
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+ +YDQMPEP+ V+++G CA GG + +Y+V+ G D+++PVD+YVPGCP EA+I
Sbjct: 72 VLKNIYDQMPEPKVVVAVGVCAATGGIFREAYNVLGGIDKVIPVDVYVPGCPAKPEAIID 131
Query: 169 GILL----LQKKIRRVGNVK 184
G+ L++K ++G +
Sbjct: 132 GLYKAAEILKEKYEKMGKAE 151
>gi|237729674|ref|ZP_04560155.1| hydrogenase activity [Citrobacter sp. 30_2]
gi|226908280|gb|EEH94198.1| hydrogenase activity [Citrobacter sp. 30_2]
Length = 255
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 77/150 (51%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L + R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKSIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|124486434|ref|YP_001031050.1| ech hydrogenase subunit C [Methanocorpusculum labreanum Z]
gi|124363975|gb|ABN07783.1| ech hydrogenase subunit C [Methanocorpusculum labreanum Z]
Length = 144
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 74/134 (55%), Gaps = 3/134 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
+ S + + C +E++ A P YD+ERFG +P +D+ +V G + +
Sbjct: 5 SKSPWLLHYNASSCNGCDIEILAALTPVYDVERFGIINTGNPAHADIFVVTGGVNEQNKV 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+ +YDQ+PEP+ V+++G CA+ GG + Y++ G D I+PVD+YVPGC EALI
Sbjct: 65 VLKNLYDQIPEPKVVVAVGICASSGGVFRDCYNISGGVDTIIPVDVYVPGCSVRPEALIE 124
Query: 169 GILLLQKKIRRVGN 182
GI+ +
Sbjct: 125 GIVKALGVLEEKRA 138
>gi|293392055|ref|ZP_06636389.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|290952589|gb|EFE02708.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 258
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 6/164 (3%)
Query: 21 KVDADFSRISSEIT-HKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYD 78
++ + IS+ + + L R+ + + G C +E+ P +D
Sbjct: 4 QIPMPVNGISTPFSIDENIAKMKQTLLKNIQRSAYVYRVDCGGCNGCEIEIFSTITPTFD 63
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
ERFG ASPR +D+++ G +T M + R Y P+P+ IS G+C GGG +H
Sbjct: 64 AERFGIKVVASPRHADILLFTGAVTRAMRTPAIRAYQAAPDPKICISYGACGCGGGIFHD 123
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIR 178
Y V G D+IVP+D+Y+PGCPPT A IYG + L +K++
Sbjct: 124 LYCVWGGSDQIVPIDVYIPGCPPTPAATIYGFAMALGLLDQKLK 167
>gi|123443021|ref|YP_001008384.1| hydrogenase-4 component I [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122089982|emb|CAL12839.1| hydrogenase-4 component I [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 268
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T
Sbjct: 34 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 93
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M + R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT
Sbjct: 94 AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 153
Query: 165 ALIYGIL----LLQKKIRRV 180
A IYG LL++K++
Sbjct: 154 ATIYGFAVALGLLEQKLKGE 173
>gi|260768583|ref|ZP_05877517.1| formate hydrogenlyase subunit 7 [Vibrio furnissii CIP 102972]
gi|260616613|gb|EEX41798.1| formate hydrogenlyase subunit 7 [Vibrio furnissii CIP 102972]
Length = 272
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 53/137 (38%), Positives = 79/137 (57%), Gaps = 5/137 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
+ R+ + + G C +E+ A+ P YD ERFG ASPR +D+++ G +T
Sbjct: 32 IKQIKRSAYVYRVDCGGCNACEIEIFAATTPVYDTERFGIKVVASPRHADILLFTGAVTR 91
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M + R Y+ P+P+ V+S G+C GG +H Y V G D+IVPVD+Y+PGCPPT
Sbjct: 92 AMRAPALRAYEAAPDPKIVVSYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 151
Query: 165 ALIYGIL----LLQKKI 177
A +YG LL++K+
Sbjct: 152 ATLYGFAVALGLLEQKM 168
>gi|251790300|ref|YP_003005021.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya zeae
Ech1591]
gi|247538921|gb|ACT07542.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya zeae
Ech1591]
Length = 263
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 51/126 (40%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T
Sbjct: 30 LKDIQRSAYVYRVDCGGCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M + R Y+ P+P+ IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT
Sbjct: 90 AMRTPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 149
Query: 165 ALIYGI 170
A IYG
Sbjct: 150 ATIYGF 155
>gi|307130311|ref|YP_003882327.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937]
gi|306527840|gb|ADM97770.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937]
Length = 263
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 52/126 (41%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T
Sbjct: 30 LKDIQRSAYVYRVDCGGCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M S R Y+ P+P+ IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT
Sbjct: 90 AMRSPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 149
Query: 165 ALIYGI 170
A IYG
Sbjct: 150 ATIYGF 155
>gi|311278313|ref|YP_003940544.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Enterobacter cloacae
SCF1]
gi|308747508|gb|ADO47260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Enterobacter cloacae
SCF1]
Length = 255
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|325288319|ref|YP_004264500.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
gi|324963720|gb|ADY54499.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
Length = 247
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 46/118 (38%), Positives = 75/118 (63%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C EM + P YD++R GF ASPR +DV++V G +T + A+++ + P P
Sbjct: 130 SCNGCDWEMTTLTGPVYDIQRLGFDFVASPRHADVLMVTGPVTRNLRIAVQKTFQATPAP 189
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+ ++++G+CA GG SY+ G DR++PVDIY+PGCPP +ALI G++ +++K+
Sbjct: 190 KLIVAVGTCACSGGICGKSYASAGGVDRVLPVDIYIPGCPPRPQALIQGLMKIREKLE 247
>gi|89074820|ref|ZP_01161274.1| hydrogenase-4 component I [Photobacterium sp. SKA34]
gi|89049395|gb|EAR54957.1| hydrogenase-4 component I [Photobacterium sp. SKA34]
Length = 277
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 82/143 (57%), Gaps = 6/143 (4%)
Query: 44 DQLVTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
D L+ R + ++ C C +E+ A+ P +D ERFG ASPR +D+++ G+
Sbjct: 29 DALIKEIRRSAYVYRIDCGGCNACEIEIFAATTPVFDTERFGIKIVASPRHADILLYTGS 88
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+T M + R Y+ P+P+ VIS G+C GG +H Y V G D+IVPVD+Y+PGCPP
Sbjct: 89 VTRAMRAPALRAYEAAPDPKIVISYGACGCDGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 148
Query: 162 TAEALIYGIL----LLQKKIRRV 180
T A IYG LL +K++
Sbjct: 149 TPAATIYGFAVALGLLDQKLKTK 171
>gi|20806654|ref|NP_621825.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
oxidoreductase [Thermoanaerobacter tengcongensis MB4]
gi|20515103|gb|AAM23429.1| NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S
oxidoreductases [Thermoanaerobacter tengcongensis MB4]
Length = 155
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 85/140 (60%), Gaps = 7/140 (5%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + C +E++ P YD+ERFG +P+ +D+++V G++ +
Sbjct: 12 KKSPWVLHYNASSCNGCDIEILACMTPIYDMERFGMMNVGNPKHADILVVTGSVNTRNKD 71
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+ +YDQMPEP+ V+++G CA GG + +Y+V+ G D+++PVD+YVPGCP EA+I
Sbjct: 72 VLKNIYDQMPEPKVVVAVGVCAATGGVFRDTYNVLGGVDKVIPVDVYVPGCPAKPEAIID 131
Query: 169 GILL----LQKKIRRVGNVK 184
G+ L++K +++G +
Sbjct: 132 GLYKATEILKEKYKKMGKAE 151
>gi|261868405|ref|YP_003256327.1| hydrogenase-4 subunit I [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|261413737|gb|ACX83108.1| hydrogenase-4 component I [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 258
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 6/164 (3%)
Query: 21 KVDADFSRISSEIT-HKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYD 78
++ + IS+ + + L R+ + + G C +E+ P +D
Sbjct: 4 QIPMPVNGISTPFSIDENIAKMKQTLLKNIQRSAYVYRVDCGGCNGCEIEIFSTITPTFD 63
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
ERFG ASPR +D+++ G +T M + R Y P+P+ IS G+C GGG +H
Sbjct: 64 AERFGIKVVASPRHADILLFTGAVTRAMRTPAMRAYQAAPDPKICISYGACGCGGGIFHD 123
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIR 178
Y V G D+IVP+D+Y+PGCPPT A IYG + L +K++
Sbjct: 124 LYCVWGGSDQIVPIDVYIPGCPPTPAATIYGFAMALGLLDQKLK 167
>gi|238793444|ref|ZP_04637069.1| Formate hydrogenlyase subunit 7 [Yersinia intermedia ATCC 29909]
gi|238727217|gb|EEQ18746.1| Formate hydrogenlyase subunit 7 [Yersinia intermedia ATCC 29909]
Length = 262
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 5/141 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T
Sbjct: 27 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 86
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M + R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT
Sbjct: 87 AMRAPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 146
Query: 165 ALIYGIL----LLQKKIRRVG 181
A IYG LL++K++
Sbjct: 147 ATIYGFAVALGLLEQKLKGEE 167
>gi|73669936|ref|YP_305951.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro]
gi|72397098|gb|AAZ71371.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro]
Length = 163
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 82/133 (61%), Gaps = 7/133 (5%)
Query: 54 SLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S + C +E++ P YD ERFG +P+Q+D+M+V G + K + L
Sbjct: 6 SPWIVHVNCNSCNGCDIEVIACLTPLYDAERFGVLNIGTPKQADIMVVTGAVNYKNVNVL 65
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
+Y+Q+P+P+ VI++G+CA+ GG +H Y+V+ G D+++PVDIYVPGC P EA++ GI
Sbjct: 66 INIYNQIPDPKVVIAVGACASTGGIFHSCYNVIGGVDQVIPVDIYVPGCCPRPEAILDGI 125
Query: 171 LL----LQKKIRR 179
+ L+ K +R
Sbjct: 126 IAALPILEDKKKR 138
>gi|238755287|ref|ZP_04616631.1| Formate hydrogenlyase subunit 7 [Yersinia ruckeri ATCC 29473]
gi|238706521|gb|EEP98894.1| Formate hydrogenlyase subunit 7 [Yersinia ruckeri ATCC 29473]
Length = 265
Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 61/176 (34%), Positives = 90/176 (51%), Gaps = 14/176 (7%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACC 65
+Q +I + L V +++ K L+TS+ R+ + + G C
Sbjct: 2 SQTLIGPRDENGL-PVPVTIDESIAKL--KSTLLTSIR------RSAYVYRVDCGGCNGC 52
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
+E+ A P +D ERFG SPR +D+++ G +T M R +D P+P+ IS
Sbjct: 53 EIEIFAAISPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRIPALRAWDSAPDPKISIS 112
Query: 126 MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKI 177
G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A IYG + L +KI
Sbjct: 113 YGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKI 168
>gi|323139190|ref|ZP_08074246.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp.
ATCC 49242]
gi|322395573|gb|EFX98118.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp.
ATCC 49242]
Length = 166
Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 57/161 (35%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 14 QSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF-GLACCAVEMMQA 72
E ++ +E+ L TS + + R+ S+ + C +E+
Sbjct: 1 MQRVLTEPPPESDEKMLAELGE--TLSTSARRAL--GRSLSVRQVDAGSCNGCELEIHAL 56
Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
S P YDLERFG ASPR +DV++V G +T M AL+R YD P P++V+++G CA
Sbjct: 57 SNPYYDLERFGLRFVASPRHADVLMVTGPVTKNMCEALQRTYDATPNPKWVVAVGDCAFD 116
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
GG + SY+ V ++VPVD++V GCPP AL+ G++ L
Sbjct: 117 GGVFAGSYACVGAVTKVVPVDLHVRGCPPDPIALLKGLIAL 157
>gi|238921134|ref|YP_002934649.1| hydrogenase-4 component I [Edwardsiella ictaluri 93-146]
gi|238870703|gb|ACR70414.1| hydrogenase-4 component I [Edwardsiella ictaluri 93-146]
Length = 274
Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 54/144 (37%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T
Sbjct: 41 LKDIRRSAYVYRVDCGGCNGCEIEIFAAISPLFDAERFGIKVVASPRHADILLFTGAVTR 100
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M R Y P+P+ VIS G+C GG +H Y V G D+IVPVD+Y+PGCPPT
Sbjct: 101 AMRIPAIRAYQSAPDPKIVISYGACGCSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 160
Query: 165 ALIYGIL----LLQKKIRRVGNVK 184
A +YG LL +K++ + +
Sbjct: 161 ATLYGFAVALGLLDQKLKAQHHSQ 184
>gi|288961303|ref|YP_003451642.1| NADH ubiquinone oxidoreductase [Azospirillum sp. B510]
gi|288913611|dbj|BAI75098.1| NADH ubiquinone oxidoreductase [Azospirillum sp. B510]
Length = 259
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 79/139 (56%), Gaps = 5/139 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T M
Sbjct: 23 RSAYVYRVDCGGCNGCEIEIFSSITPVFDAERFGIKVVASPRHADILLFTGAVTRSMRMP 82
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+P+ V+S G+C GG +H Y V G D IVPVD+Y+PGCPPT A I+G
Sbjct: 83 ALRAYEAAPDPKIVVSYGACGCTGGIFHDLYCVWGGTDNIVPVDVYIPGCPPTPAATIHG 142
Query: 170 IL----LLQKKIRRVGNVK 184
LL++K++ +V+
Sbjct: 143 FAVALGLLEQKLKAEIHVE 161
>gi|118581190|ref|YP_902440.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
propionicus DSM 2379]
gi|118581198|ref|YP_902448.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
propionicus DSM 2379]
gi|118503900|gb|ABL00383.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
propionicus DSM 2379]
gi|118503908|gb|ABL00391.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
propionicus DSM 2379]
Length = 179
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 53 GSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
SL C +E++ P YD+ERFG SPR +DVM+ G A
Sbjct: 12 RSLWVYHANSGGCNGCDIEVLNVLTPYYDVERFGIKLVGSPRHADVMLCQGPAMRSTGKA 71
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
L+R Y MP P+ V ++GSCA GGG +H SY+V ++++PV+ YVPGCPP EA+I+G
Sbjct: 72 LQRAYAAMPGPKLVFAIGSCACGGGIWHDSYAVHGPVEKLIPVNYYVPGCPPRPEAIIWG 131
Query: 170 I 170
+
Sbjct: 132 V 132
>gi|303243875|ref|ZP_07330215.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
gi|302485811|gb|EFL48735.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
Length = 251
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 52/168 (30%), Positives = 81/168 (48%), Gaps = 7/168 (4%)
Query: 8 QKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLM-WMTFGLAC-- 64
K +L++ D I E + + +L S+ C
Sbjct: 85 IKFTRDYRMFALKREDLIIKDILKEPKMDNSKIKKIKKLFG----KSVYLRYVCAGGCNA 140
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
C ++ + P YDL RFG ASPR +D ++V G +T M AL + Y+ +P P+ VI
Sbjct: 141 CDADVNVLNTPVYDLSRFGIKFAASPRHADGLVVTGPITKNMELALMKTYNAIPSPKCVI 200
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
++G+CA GG + + VV G D+I+PVD+Y+PGCPP +Y +
Sbjct: 201 AVGACAISGGLFRENEEVVGGVDKILPVDLYIPGCPPHPFTNLYAFVK 248
>gi|115522982|ref|YP_779893.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris BisA53]
gi|115516929|gb|ABJ04913.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris BisA53]
Length = 173
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 45/109 (41%), Positives = 68/109 (62%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + YD+ERFG ASPR +DV++V G +T MA AL+ YD P P
Sbjct: 54 SCNGCELEIHALNNAYYDIERFGLRFVASPRHADVLLVTGPVTKNMADALKTTYDATPSP 113
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
++V++ G CA GG + SY+VV G +++PVD+++PGCPP ++ G
Sbjct: 114 KWVVACGDCARDGGCFAGSYAVVGGVSQVIPVDLHIPGCPPPPLQILRG 162
>gi|238749929|ref|ZP_04611433.1| Formate hydrogenlyase subunit 7 [Yersinia rohdei ATCC 43380]
gi|238711858|gb|EEQ04072.1| Formate hydrogenlyase subunit 7 [Yersinia rohdei ATCC 43380]
Length = 236
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 5/142 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
+ R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T
Sbjct: 1 MKDIKRSAYVYRVDCGGCNGCEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTR 60
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M + R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT
Sbjct: 61 AMRTPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 120
Query: 165 ALIYGIL----LLQKKIRRVGN 182
A IYG LL++K++ +
Sbjct: 121 ATIYGFAVALGLLEQKLKGEES 142
>gi|262043973|ref|ZP_06017057.1| hydrogenase-4 component I [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259038699|gb|EEW39886.1| hydrogenase-4 component I [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 255
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ P +D ERFG SPR +D+++ G +T
Sbjct: 31 LEKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTR 90
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M S R + P+P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT
Sbjct: 91 AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
Query: 165 ALIYGILL----LQKKI 177
A +YG + L++KI
Sbjct: 151 ATLYGFAMALGLLEQKI 167
>gi|119871850|ref|YP_929857.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM
4184]
gi|119673258|gb|ABL87514.1| NADH-quinone oxidoreductase, B subunit [Pyrobaculum islandicum DSM
4184]
gi|164472821|dbj|BAF32936.2| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum islandicum DSM
4184]
Length = 183
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 58/130 (44%), Positives = 82/130 (63%), Gaps = 1/130 (0%)
Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
W SL + +CC VE+ S P +D ER+G P + RQS+V++V GT+T KMA
Sbjct: 21 WGVRWSLWPVHLVTSCCGVEVAHTSGPGFDAERWGVLPFHTMRQSNVILVEGTITKKMAK 80
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+ VY+QMPEP+YVI+MG+CA GG + SY VV+ + +Y+ GCPPT EA+I
Sbjct: 81 VLKMVYEQMPEPKYVIAMGACAVRGGLFWNSYHVVQVDTVVPVD-VYIAGCPPTPEAVIR 139
Query: 169 GILLLQKKIR 178
++L KI+
Sbjct: 140 AFIMLHNKIK 149
>gi|242238721|ref|YP_002986902.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii
Ech703]
gi|242130778|gb|ACS85080.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dickeya dadantii
Ech703]
Length = 263
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 51/126 (40%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T
Sbjct: 30 LKDIQRSAYVYRVDCGGCNGCEIEIFSAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M + R Y+ P+P+ IS G+C GGG +H Y V G D+IVP+D+Y+PGCPPT
Sbjct: 90 AMRTPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSDKIVPIDVYIPGCPPTPA 149
Query: 165 ALIYGI 170
A IYG
Sbjct: 150 ATIYGF 155
>gi|238784034|ref|ZP_04628049.1| Formate hydrogenlyase subunit 7 [Yersinia bercovieri ATCC 43970]
gi|238715011|gb|EEQ07008.1| Formate hydrogenlyase subunit 7 [Yersinia bercovieri ATCC 43970]
Length = 237
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 53/142 (37%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T
Sbjct: 2 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 61
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M S R Y P+P+ IS G+C GGG +H Y V G D IVP+D+Y+PGCPPT
Sbjct: 62 AMRSPALRAYQSAPDPKICISYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 121
Query: 165 ALIYGIL----LLQKKIRRVGN 182
A +YG LL++K++ +
Sbjct: 122 ATLYGFAVALGLLEQKLKGEES 143
>gi|158425979|ref|YP_001527271.1| NADH ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571]
gi|158332868|dbj|BAF90353.1| NADH ubiquinone oxidoreductase [Azorhizobium caulinodans ORS 571]
gi|211948048|gb|ACJ13747.1| HyqI [Azorhizobium caulinodans ORS 571]
Length = 170
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 46/116 (39%), Positives = 70/116 (60%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ S YDLERFG ASPR +DV++V G +T M AL R Y+ P P
Sbjct: 54 SCNGCELEIHALSNAYYDLERFGLRFVASPRHADVLLVTGPVTTNMREALVRTYEATPGP 113
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
++V++ GSCA GG + SY+ + ++PVD+ +PGCPP +L+ G++ L ++
Sbjct: 114 KWVVAAGSCACDGGLFAQSYACAGAVENVIPVDLRIPGCPPAPLSLLKGLIALLQR 169
>gi|20093160|ref|NP_619235.1| hydrogenase-3, subunit G (HycG homolog) [Methanosarcina acetivorans
C2A]
gi|19918502|gb|AAM07715.1| hydrogenase-3, subunit G (HycG-like protein) [Methanosarcina
acetivorans C2A]
Length = 170
Score = 150 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 48/113 (42%), Positives = 77/113 (68%)
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
+E+ P YD+ERFG + ASPR +D+++V G +T MA A+++ Y+ MP P++V+++
Sbjct: 58 IEISNLGNPHYDVERFGISFVASPRHADILLVTGAVTLNMAEAVKKTYEAMPSPKFVVAV 117
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
G A GG Y SY+V+ G D+I+PVD+ +PG PP+ + ++ GIL L KK +
Sbjct: 118 GDDACDGGIYKDSYAVLSGVDKILPVDMKIPGNPPSPKEILKGILALVKKASK 170
>gi|146312833|ref|YP_001177907.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter sp.
638]
gi|145319709|gb|ABP61856.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Enterobacter sp.
638]
Length = 255
Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 5/137 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ P +D ERFG SPR +D+++ G +T
Sbjct: 31 LKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAMTR 90
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M S R + P+P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT
Sbjct: 91 AMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPA 150
Query: 165 ALIYGILL----LQKKI 177
A +YG + L++KI
Sbjct: 151 ATLYGFAMALGLLEQKI 167
>gi|307825300|ref|ZP_07655520.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter
tundripaludum SV96]
gi|307733756|gb|EFO04613.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter
tundripaludum SV96]
Length = 171
Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 47/115 (40%), Positives = 69/115 (60%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P YD+ERFG ASPR +DV++V G ++ M +AL R Y+ P P
Sbjct: 54 SCNGCELEIHALNNPFYDIERFGVHFVASPRHADVLLVTGPVSRHMQTALLRTYEATPNP 113
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
++VI+ G CA GG + SY+ ++PVD+ +PGCPPT AL+ G+L L
Sbjct: 114 KWVIAAGDCAACGGEFGVSYASCGAVSNVIPVDVVIPGCPPTPLALMKGLLGLIN 168
>gi|157370668|ref|YP_001478657.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Serratia
proteamaculans 568]
gi|157322432|gb|ABV41529.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Serratia
proteamaculans 568]
Length = 265
Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 56/145 (38%), Positives = 79/145 (54%), Gaps = 7/145 (4%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMI 97
L T++ L R+ + + G C +E+ A P +D ERFG SPR +D+++
Sbjct: 27 LKTTL--LQDIRRSAYVYRVDCGGCNGCEIEIFAAVSPLFDAERFGIKVVPSPRHADILL 84
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
G +T M R + P+P+ IS G+C N GG +H Y V G DRIVPVD+Y+P
Sbjct: 85 FTGAVTRAMRIPAIRAWQASPDPKISISYGACGNSGGIFHDLYCVWGGTDRIVPVDVYIP 144
Query: 158 GCPPTAEALIYGILL----LQKKIR 178
GCPPT A IYG + L +KI+
Sbjct: 145 GCPPTPAATIYGFAMALGLLDQKIK 169
>gi|332999462|gb|EGK19047.1| formate hydrogenlyase subunit 7 [Shigella flexneri VA-6]
Length = 255
Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGILHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|213610076|ref|ZP_03369902.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 175
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|261368110|ref|ZP_05980993.1| NADH dehydrogenase I, B subunit [Subdoligranulum variabile DSM
15176]
gi|282569868|gb|EFB75403.1| NADH dehydrogenase I, B subunit [Subdoligranulum variabile DSM
15176]
Length = 152
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 77/132 (58%), Gaps = 3/132 (2%)
Query: 54 SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S + + C +E++ + P+YD+ERFG P Q+D++++ G + ++ +
Sbjct: 7 SPWMLHYDASSCNGCDIEVLACTTPKYDIERFGIINTGDPFQADILLITGGVNSQCEGVV 66
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
R++Y+QMP P+ V+++G CA GG + Y++ G D ++PVD+YVPGC +A+I G+
Sbjct: 67 RQLYEQMPNPKVVVAVGICACTGGVFKDCYNIKGGIDTVIPVDVYVPGCAARPQAIIDGV 126
Query: 171 LLLQKKIRRVGN 182
+ + + +
Sbjct: 127 VKALEILEDKRS 138
>gi|182679430|ref|YP_001833576.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182635313|gb|ACB96087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 177
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 49/117 (41%), Positives = 69/117 (58%), Gaps = 1/117 (0%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ YDLERFG ASPR +DV++V G +T+ M AL R YD P P
Sbjct: 52 SCNGCELEINALGNAFYDLERFGLRFVASPRHADVLLVTGPVTHNMREALLRTYDATPNP 111
Query: 121 RYVISMGSCANGGGYYHYSYSV-VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
++V++ G+CA G G + SY+ G ++ VD+Y+PGCPPT L+ G+L L K
Sbjct: 112 KWVVAAGTCALGEGVFAESYACQKGGVSAVIAVDLYIPGCPPTPTDLLKGLLALITK 168
>gi|238799239|ref|ZP_04642686.1| Formate hydrogenlyase subunit 7 [Yersinia mollaretii ATCC 43969]
gi|238716904|gb|EEQ08773.1| Formate hydrogenlyase subunit 7 [Yersinia mollaretii ATCC 43969]
Length = 250
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ + P +D ERFG ASPR +D+++ G +T
Sbjct: 15 LKDIKRSAYVYRVDCGGCNGCEIEIFSSITPLFDTERFGIKVVASPRHADILLFTGAVTR 74
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M S R Y+ P+P+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT
Sbjct: 75 AMRSPALRAYESAPDPKICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPA 134
Query: 165 ALIYGIL----LLQKKIRRV 180
A IYG LL++K++
Sbjct: 135 ATIYGFAVALGLLEQKLKGE 154
>gi|213583852|ref|ZP_03365678.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 174
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|326389233|ref|ZP_08210801.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
ethanolicus JW 200]
gi|325994596|gb|EGD53020.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
ethanolicus JW 200]
Length = 155
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 85/140 (60%), Gaps = 7/140 (5%)
Query: 52 TGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + + C +E++ P YD+ERFG +P+ +D+++V GT+ +
Sbjct: 12 KKSPWVLHYNCSSCNGCDIEILACMTPLYDMERFGMVNVGNPKHADILVVTGTVNTRNKE 71
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+ +YDQMP+P+ V+++G CA GG + +Y+V+ G D+++PVD+YVPGCP EA+I
Sbjct: 72 VLKNIYDQMPDPKVVVAVGVCAATGGVFREAYNVIGGIDKVIPVDVYVPGCPAKPEAIID 131
Query: 169 GILL----LQKKIRRVGNVK 184
G+ L++K ++G +
Sbjct: 132 GLYKAAEILKEKYEKMGKAE 151
>gi|12001974|gb|AAG43130.1|AF060512_1 My017 protein [Homo sapiens]
Length = 214
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 77/196 (39%), Positives = 104/196 (53%), Gaps = 31/196 (15%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V+Q + + S + + + + ++V +D LV WAR SL MTFGLAC
Sbjct: 29 GVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 88
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+ P
Sbjct: 89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRK----SPPR---- 140
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYV----------------PGCPPTAEALIY 168
+ G + +R R++P +++ P P TAEAL+Y
Sbjct: 141 -----PDAGAALRGLHGELRQRGRLLP--LFLLGGEGLRPHRARGHLHPRLPTTAEALLY 193
Query: 169 GILLLQKKIRRVGNVK 184
GIL LQ+KI+R ++
Sbjct: 194 GILQLQRKIKRERRLQ 209
>gi|296242761|ref|YP_003650248.1| NADH dehydrogenase 30 kDa subunit [Thermosphaera aggregans DSM
11486]
gi|296095345|gb|ADG91296.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Thermosphaera
aggregans DSM 11486]
Length = 339
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/139 (37%), Positives = 75/139 (53%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+D+LV WAR+ S+ + + AC AVE M D ER+G+ P SPRQSD+ + G L
Sbjct: 4 LDKLVRWARSRSIWMIHYCSACGAVEFPPLVMSPLDWERYGYMPAPSPRQSDLYVGMGYL 63
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T K +Y Q+PEPR+V + +C GG Y SY+ + D V V+ +VPGC P
Sbjct: 64 TKKTVKLFLNMYRQVPEPRFVAAGCNCTATGGLYWDSYATYKRLDEFVEVEGWVPGCMPM 123
Query: 163 AEALIYGILLLQKKIRRVG 181
+ + L++KI
Sbjct: 124 PDDYFSLLEHLRRKIASTR 142
>gi|73667700|ref|YP_303715.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro]
gi|3005969|emb|CAA76119.1| echC [Methanosarcina barkeri]
gi|72394862|gb|AAZ69135.1| ech hydrogenase subunit C [Methanosarcina barkeri str. Fusaro]
Length = 156
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/121 (37%), Positives = 78/121 (64%), Gaps = 3/121 (2%)
Query: 54 SLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S + C +E++ P YD ERFG +P+Q+D+M+V G++ K + L
Sbjct: 6 SPWIIHVNCNSCNGCDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNVNVL 65
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
+ +Y+Q+P+P+ V+++G+CA+ GG +H Y+V+ G D+++PVD YVPGC P EA++ G+
Sbjct: 66 KNIYNQIPDPKVVLAVGACASTGGIFHDCYNVIGGVDQVIPVDAYVPGCCPRPEAILDGV 125
Query: 171 L 171
+
Sbjct: 126 V 126
>gi|94468067|gb|ABF20066.1| Ech hydrogenase small subunit [Klebsiella pneumoniae]
Length = 255
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGILHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PGCPPT A +YG + L++KI
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKI 167
>gi|149034569|gb|EDL89306.1| NADH dehydrogenase (ubiquinone) Fe-S protein 7, isoform CRA_b
[Rattus norvegicus]
Length = 94
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 78/89 (87%), Positives = 84/89 (94%)
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIVAGTLTNKMA ALR+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY
Sbjct: 1 MIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 60
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
VPGCPPTAEAL+YGIL LQ+KI+R +K
Sbjct: 61 VPGCPPTAEALLYGILQLQRKIKREQKLK 89
>gi|73748664|ref|YP_307903.1| hydrogenase, group 4, EchC subunit [Dehalococcoides sp. CBDB1]
gi|147669423|ref|YP_001214241.1| ech hydrogenase subunit C [Dehalococcoides sp. BAV1]
gi|289432690|ref|YP_003462563.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
GT]
gi|73660380|emb|CAI82987.1| hydrogenase, group 4, EchC subunit [Dehalococcoides sp. CBDB1]
gi|146270371|gb|ABQ17363.1| ech hydrogenase subunit C [Dehalococcoides sp. BAV1]
gi|288946410|gb|ADC74107.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
GT]
Length = 155
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 3/122 (2%)
Query: 54 SLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S + F C +E++ P YD+ERFG +P+ SDV++V G + L
Sbjct: 11 SPWLLHFDCGSCNGCDIEILACLTPLYDVERFGIVNMGNPKHSDVLLVTGPANKRNYRVL 70
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
R +Y+QMPEP+ VI +G+C GG +H +++ G D+++PVD+YVPGC EA+I G+
Sbjct: 71 RNLYEQMPEPKVVIVIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAARPEAIIDGV 130
Query: 171 LL 172
++
Sbjct: 131 VM 132
>gi|210631897|ref|ZP_03297109.1| hypothetical protein COLSTE_00999 [Collinsella stercoris DSM 13279]
gi|210159822|gb|EEA90793.1| hypothetical protein COLSTE_00999 [Collinsella stercoris DSM 13279]
Length = 228
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
+ S + + C +E++ + MP YD+ERFG +P+ +D+ +V G++ +
Sbjct: 5 SKSPWLIHYDGSSCNGCDIEVLDSMMPLYDIERFGIINTGNPKHADIFLVTGSVNAQNIE 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
+R +YDQM EP+ V++ G CA GG + Y+V+ G D+ +PVD+Y PGC E +I
Sbjct: 65 VVRHIYDQMLEPKVVVACGICACTGGVFRDCYNVIGGVDKAIPVDVYAPGCAVRPETIID 124
Query: 169 GILLLQKKIRRVGNV 183
+L + + +
Sbjct: 125 AVLKAVEILDEKAKL 139
>gi|139437055|ref|ZP_01771215.1| Hypothetical protein COLAER_00190 [Collinsella aerofaciens ATCC
25986]
gi|133776702|gb|EBA40522.1| Hypothetical protein COLAER_00190 [Collinsella aerofaciens ATCC
25986]
Length = 260
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ + P +D+ERFG SPR +DV++ G +T
Sbjct: 32 LKKIKRSVYVYRVDCGGCNGCEIEIFGSITPVFDVERFGIKVVPSPRHADVLLYTGAVTR 91
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M R ++ P+P+ V+S G+C GG ++ +Y V G D+I+PVD+Y+PGCPP+
Sbjct: 92 AMRMPALRAFEAAPDPKIVVSYGACGCTGGIFYDNYCVWGGTDKILPVDVYIPGCPPSPA 151
Query: 165 ALIYGILL----LQKKIRRVGNVK 184
+YG + L +K+ V+
Sbjct: 152 QTVYGFAMALGLLDQKLHAETTVE 175
>gi|289578801|ref|YP_003477428.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
italicus Ab9]
gi|289528514|gb|ADD02866.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
italicus Ab9]
Length = 155
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 79/132 (59%), Gaps = 3/132 (2%)
Query: 52 TGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + C +E++ P YD+ERFG +P+ +D+++V GT+ +K
Sbjct: 12 KKSPWVIHYDCGSCNGCDIELLSCMTPLYDMERFGMVNVGNPKHADILVVTGTVNHKNKV 71
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+ +YDQMPEP+ V+++G CA GG + Y+VV G D+I+PVD+YVPGCP EA+I
Sbjct: 72 VLKNIYDQMPEPKVVVAVGVCAATGGIFRECYNVVGGVDKIIPVDVYVPGCPAKPEAIID 131
Query: 169 GILLLQKKIRRV 180
G+ + ++
Sbjct: 132 GLYKATEILKEK 143
>gi|297545022|ref|YP_003677324.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296842797|gb|ADH61313.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 155
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 49/132 (37%), Positives = 79/132 (59%), Gaps = 3/132 (2%)
Query: 52 TGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + C +E++ P YD+ERFG +P+ +D+++V GT+ +K
Sbjct: 12 KKSPWVIHYDCGSCNGCDIELLSCMTPLYDMERFGMVNVGNPKHADILVVTGTVNHKNKV 71
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L+ +YDQMPEP+ V+++G CA GG + Y+VV G D+I+PVD+YVPGCP EA+I
Sbjct: 72 VLKNIYDQMPEPKVVVAVGVCAATGGIFRECYNVVGGVDKIIPVDVYVPGCPAKPEAIID 131
Query: 169 GILLLQKKIRRV 180
G+ + ++
Sbjct: 132 GLYKATEILKEK 143
>gi|218696313|ref|YP_002403980.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli 55989]
gi|218353045|emb|CAU98870.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Escherichia coli 55989]
Length = 255
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALCAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
VD+Y+PGCPPT A +YG + L++KI G
Sbjct: 138 VDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 171
>gi|31580608|gb|AAP51027.1| EchC [Desulfovibrio gigas]
Length = 147
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 3/140 (2%)
Query: 45 QLVTWARTGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
+ +R S M F C +E + P FG +P+ +D++IV+GT
Sbjct: 6 DFIKSSRIKSPWLMHFDCGFCNGCDIETLACLDPHLRRGTFGIVNVGNPKHADILIVSGT 65
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+ ++ L +Y+QMP P+ V+++G+C GG + + +VV G D+++PVD YVPGCPP
Sbjct: 66 VNHRNKKVLANLYEQMPHPKVVVAIGACGLSGGVFREAPNVVGGIDKVIPVDAYVPGCPP 125
Query: 162 TAEALIYGILLLQKKIRRVG 181
EA+I G++L +K
Sbjct: 126 KPEAIIDGVVLGLQKFAEKS 145
>gi|21228424|ref|NP_634346.1| ech hydrogenase subunit [Methanosarcina mazei Go1]
gi|20906901|gb|AAM32018.1| Ech Hydrogenase, Subunit [Methanosarcina mazei Go1]
Length = 156
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 46/121 (38%), Positives = 78/121 (64%), Gaps = 3/121 (2%)
Query: 54 SLMWMT---FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S + C +E++ P YD ERFG +P+Q+D+M+V G++ K + L
Sbjct: 6 SPWIIHVNCNSCNGCDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNVNVL 65
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
+ +Y+Q+P+P+ V+++G+CA+ GG +H Y+V+ G D+I+PVD YVPGC P EA++ G+
Sbjct: 66 KNLYNQIPDPKVVLAVGACASTGGIFHNCYNVIGGVDQIIPVDAYVPGCCPRPEAILDGV 125
Query: 171 L 171
+
Sbjct: 126 V 126
>gi|225466336|ref|XP_002274046.1| PREDICTED: similar to NADH-plastoquinone oxidoreductase subunit K,
partial [Vitis vinifera]
Length = 155
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 50/90 (55%), Positives = 69/90 (76%), Gaps = 1/90 (1%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIV 150
Q+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++
Sbjct: 1 QADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLI 60
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 61 PVDVYLPGCPPKPEAVIDAITKLRKKISRE 90
>gi|238788858|ref|ZP_04632649.1| Formate hydrogenlyase subunit 7 [Yersinia frederiksenii ATCC 33641]
gi|238723163|gb|EEQ14812.1| Formate hydrogenlyase subunit 7 [Yersinia frederiksenii ATCC 33641]
Length = 224
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 51/124 (41%), Positives = 73/124 (58%), Gaps = 4/124 (3%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C +E+ A P +D ERFG ASPR +D+++ G +T M + R Y+ P+P
Sbjct: 5 GCNGCEIEIFAAITPLFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDP 64
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A IYG LL++K
Sbjct: 65 KICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQK 124
Query: 177 IRRV 180
++
Sbjct: 125 LKGE 128
>gi|309702767|emb|CBJ02098.1| hydrogenase-4 component I [Escherichia coli ETEC H10407]
Length = 251
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R ++ + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 31 RRSAVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 90
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 91 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 150
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 151 FAVALGLLQQKI 162
>gi|88603006|ref|YP_503184.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
hungatei JF-1]
gi|88188468|gb|ABD41465.1| ech hydrogenase subunit C [Methanospirillum hungatei JF-1]
Length = 148
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 3/132 (2%)
Query: 54 SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S + + C +E++ P YD+ERFG +P+ +D+ ++ G + +
Sbjct: 7 SPWIIHYDASSCNGCDIEVLACLTPLYDVERFGILNTGNPKHADIFVITGGVNEINKEVV 66
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
+Y+QMP P+ V+++G CA GG + Y++ G ++PVD+YVPGC E++I GI
Sbjct: 67 LNIYEQMPHPKVVVAVGICACSGGVFRECYNISGGVATVIPVDVYVPGCAARPESIIDGI 126
Query: 171 LLLQKKIRRVGN 182
+ + + +
Sbjct: 127 VQALGILEQKRS 138
>gi|289549193|ref|YP_003474181.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus
DSM 14484]
gi|289182810|gb|ADC90054.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus
DSM 14484]
Length = 163
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 5/152 (3%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASP 90
+ ++ + + + + SL C VE+ P Y +E FG ASP
Sbjct: 12 KRRELVLKNAEGIAGLGK--SLYVRHVDSGSCNACEVEVAALGNPHYSIESFGIRFVASP 69
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
+ +DV++V G +T M +AL++ YD P P++VI++G C ++ SYSV + +
Sbjct: 70 KHADVLLVTGCVTRNMLTALKKAYDNTPSPKWVITVGDCTESCPFFKDSYSVEGPVSKHI 129
Query: 151 PVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
PV ++VPGCPP +I G + L I+R
Sbjct: 130 PVHLHVPGCPPEPSEIISGFIRLMNLIQREKV 161
>gi|325294933|ref|YP_004281447.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065381|gb|ADY73388.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 182
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 3/135 (2%)
Query: 51 RTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
RT S + + C VE++ P+YD+ERFG R +P+QSD+++V G +T +
Sbjct: 7 RTKSPWILHYNTGSCNGCDVEILACLAPKYDIERFGILNRGNPKQSDILLVTGPVTKRAR 66
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
L R+Y +MPEP+ V+++G CA GG + Y+V G D+ +PVD+YVPGC E +I
Sbjct: 67 ERLIRLYMEMPEPKVVVAVGVCACTGGVFRGMYNVENGVDKFIPVDVYVPGCAARPENII 126
Query: 168 YGILLLQKKIRRVGN 182
G++ + + +
Sbjct: 127 DGVVRALEILEKKKK 141
>gi|57234359|ref|YP_181588.1| hydrogenase, group 4, EchC subunit, putative [Dehalococcoides
ethenogenes 195]
gi|57224807|gb|AAW39864.1| hydrogenase, group 4, EchC subunit, putative [Dehalococcoides
ethenogenes 195]
Length = 155
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 3/122 (2%)
Query: 54 SLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S + F C +E++ P YD+ERFG +P+ SDV++V G + L
Sbjct: 11 SPWLLHFDCGSCNGCDIEILACLTPLYDVERFGIVNMGNPKHSDVLLVTGPANKRNYRVL 70
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
+ +Y QMP+P+ VI +G+C GG +H +++ G D+++PVD+YVPGC EA+I G+
Sbjct: 71 QNLYQQMPDPKVVIVIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAARPEAIIDGV 130
Query: 171 LL 172
++
Sbjct: 131 VM 132
>gi|333001926|gb|EGK21492.1| hydrogenase-4 component I [Shigella flexneri K-218]
Length = 252
Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 52/132 (39%), Positives = 76/132 (57%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ GT+T M
Sbjct: 32 RSAYVYRIDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGTVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|238757224|ref|ZP_04618411.1| Formate hydrogenlyase subunit 7 [Yersinia aldovae ATCC 35236]
gi|238704602|gb|EEP97132.1| Formate hydrogenlyase subunit 7 [Yersinia aldovae ATCC 35236]
Length = 224
Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 50/128 (39%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C +E+ + P +D ERFG ASPR +D+++ G +T M + R Y+ P+P
Sbjct: 5 GCNGCEIEIFSSITPVFDTERFGIKVVASPRHADILLFTGAVTRAMRTPALRAYESAPDP 64
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKK 176
+ +S G+C GGG +H Y V G D IVP+D+Y+PGCPPT A IYG LL++K
Sbjct: 65 KICVSYGACGCGGGIFHDLYCVWGGSDTIVPIDVYIPGCPPTPAATIYGFAVALGLLEQK 124
Query: 177 IRRVGNVK 184
++ + +
Sbjct: 125 LKGEDHQQ 132
>gi|308513287|ref|NP_951802.3| NAD-dependent dehydrogenase subunit [Geobacter sulfurreducens PCA]
gi|39982615|gb|AAR34075.1| NAD-dependent dehydrogenase subunit [Geobacter sulfurreducens PCA]
Length = 229
Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 64/118 (54%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + S +DL RFG ASPR +D + V G +T M AL ++ +P P
Sbjct: 110 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTENMREALLMTWEAIPAP 169
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+ V++ G+CA GGG + S G I+PVD+++PGCPP ++ G+L L +I
Sbjct: 170 KIVVACGACAIGGGPFADSPETHNGVADILPVDLFIPGCPPHPATILDGLLRLIGRIE 227
>gi|330008023|ref|ZP_08306139.1| NADH ubiquinone oxidoreductase, subunit [Klebsiella sp. MS 92-3]
gi|328535254|gb|EGF61746.1| NADH ubiquinone oxidoreductase, subunit [Klebsiella sp. MS 92-3]
Length = 255
Score = 147 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL----LQKKI 177
VD+Y+PG PPT A +YG + L++KI
Sbjct: 138 VDVYIPGSPPTPAATLYGFAMALGLLEQKI 167
>gi|147919863|ref|YP_686386.1| ech hydrogenase, subunit C [uncultured methanogenic archaeon RC-I]
gi|110621782|emb|CAJ37060.1| Ech hydrogenase, subunit C [uncultured methanogenic archaeon RC-I]
Length = 157
Score = 147 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 7/141 (4%)
Query: 46 LVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
V +R S + C +E++ PRYD+ RFG +P+ +DVM+V G +
Sbjct: 3 FVELSRKKSPWVIHVNTGGCNGCDLEILSCLTPRYDISRFGVYSTGNPKHADVMLVVGPV 62
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T K + +Y+QMP+P+ V+++GSCA+ G Y Y D+++PVD+YVPGC
Sbjct: 63 TLKYKEIITNLYNQMPDPKVVMAVGSCASTGAIYQGCYGTCGSLDKVIPVDVYVPGCNCR 122
Query: 163 AEALIYGILL----LQKKIRR 179
E +I G++L L +K R+
Sbjct: 123 PEGIIDGLVLALDILNEKERK 143
>gi|50120178|ref|YP_049345.1| hydrogenase-4 component I [Pectobacterium atrosepticum SCRI1043]
gi|49610704|emb|CAG74149.1| hydrogenase-4 component I [Pectobacterium atrosepticum SCRI1043]
Length = 259
Score = 147 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 5/144 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T
Sbjct: 30 LKDIQRSAYVYRVDCGGCNGCEIEIFAAITPLFDAERFGIKVVASPRHADILLFTGAVTR 89
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M R Y+ P+P+ IS G+C GGG +H Y V G + IVP+D+++PGCPPT
Sbjct: 90 AMRVPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSESIVPIDVWIPGCPPTPA 149
Query: 165 ALIYGIL----LLQKKIRRVGNVK 184
A I+G LL++K++ +++
Sbjct: 150 ATIHGFAVALGLLEQKLKGQDHIQ 173
>gi|323170245|gb|EFZ55898.1| hydrogenase-4 component I [Escherichia coli LT-68]
Length = 249
Score = 147 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 29 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 88
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 89 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 148
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 149 FAVALGLLQQKI 160
>gi|327252139|gb|EGE63811.1| hydrogenase-4 component I [Escherichia coli STEC_7v]
Length = 249
Score = 147 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 29 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 88
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 89 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 148
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 149 FAVALGLLQQKI 160
>gi|238508138|ref|XP_002385270.1| NADH dehydrogenase, putative [Aspergillus flavus NRRL3357]
gi|220688789|gb|EED45141.1| NADH dehydrogenase, putative [Aspergillus flavus NRRL3357]
Length = 94
Score = 147 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 66/89 (74%), Positives = 77/89 (86%)
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
M+VAGT+TNKMA ALR+ YDQMP+P++VISMGSCANGGGYYHYSYSVVRG DRIVPVD+Y
Sbjct: 1 MVVAGTVTNKMAPALRQCYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGVDRIVPVDVY 60
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+PGCPPT EA +YGI LQKK+R +
Sbjct: 61 IPGCPPTPEAFLYGIFQLQKKMRHTKVTR 89
>gi|312973273|ref|ZP_07787445.1| hydrogenase-4 component I [Escherichia coli 1827-70]
gi|310331868|gb|EFP99103.1| hydrogenase-4 component I [Escherichia coli 1827-70]
Length = 249
Score = 147 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 29 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 88
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 89 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 148
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 149 FAVALGLLQQKI 160
>gi|261345089|ref|ZP_05972733.1| hydrogenase-4 component I [Providencia rustigianii DSM 4541]
gi|282566773|gb|EFB72308.1| hydrogenase-4 component I [Providencia rustigianii DSM 4541]
Length = 260
Score = 147 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 53/137 (38%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T
Sbjct: 30 LKDIKRSAYVYRVDCGGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTR 89
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M R Y+ P+P+ IS G+C GGG +H Y V G + IVP+D+++PGCPPT
Sbjct: 90 AMRMPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSEHIVPIDVWIPGCPPTPA 149
Query: 165 ALIYGIL----LLQKKI 177
A IYG LLQ+K+
Sbjct: 150 ATIYGFAVALGLLQQKL 166
>gi|332755132|gb|EGJ85497.1| hydrogenase-4 component I [Shigella flexneri 4343-70]
Length = 231
Score = 147 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 52/132 (39%), Positives = 76/132 (57%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ GT+T M
Sbjct: 11 RSAYVYRIDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGTVTRAMRMP 70
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 71 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 130
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 131 FAVALGLLQQKI 142
>gi|315615732|gb|EFU96364.1| hydrogenase-4 component I [Escherichia coli 3431]
Length = 249
Score = 147 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 29 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 88
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 89 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 148
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 149 FAVALGLLQQKI 160
>gi|218705988|ref|YP_002413507.1| hydrogenase 4, Fe-S subunit [Escherichia coli UMN026]
gi|293405925|ref|ZP_06649917.1| hydrogenase-4 component I [Escherichia coli FVEC1412]
gi|298381673|ref|ZP_06991272.1| hydrogenase-4 component I [Escherichia coli FVEC1302]
gi|300897630|ref|ZP_07116035.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1]
gi|218433085|emb|CAR13980.1| hydrogenase 4, Fe-S subunit [Escherichia coli UMN026]
gi|291428133|gb|EFF01160.1| hydrogenase-4 component I [Escherichia coli FVEC1412]
gi|298279115|gb|EFI20629.1| hydrogenase-4 component I [Escherichia coli FVEC1302]
gi|300358630|gb|EFJ74500.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 198-1]
Length = 252
Score = 147 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|163785059|ref|ZP_02179780.1| hypothetical protein HG1285_04403 [Hydrogenivirga sp. 128-5-R1-1]
gi|159879672|gb|EDP73455.1| hypothetical protein HG1285_04403 [Hydrogenivirga sp. 128-5-R1-1]
Length = 171
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 43/115 (37%), Positives = 68/115 (59%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E+ S P YD+ERFG ASP+ +D +++ G +T M A+ R Y+ +PEP
Sbjct: 53 SCNACEYEISALSNPYYDVERFGIKFVASPKHADAIMITGCMTRNMYKAVLRAYENVPEP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
++VI++G C GG + SY+ + G +PVD+++ GCPP +I G+L L +
Sbjct: 113 KFVIAVGDCVLDGGVFKGSYATIDGVQDKLPVDVWIKGCPPEPIDIISGVLKLIE 167
>gi|323977333|gb|EGB72419.1| NADH ubiquinone oxidoreductase [Escherichia coli TW10509]
Length = 252
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|313650947|gb|EFS15347.1| hydrogenase-4 component I [Shigella flexneri 2a str. 2457T]
gi|332766297|gb|EGJ96507.1| hydrogenase 3 and formate hydrogenlyase complex, HycG subunit
[Shigella flexneri 2930-71]
Length = 249
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 29 RSAYVYRIDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 88
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 89 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 148
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 149 FAVALGLLQQKI 160
>gi|289806308|ref|ZP_06536937.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 160
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 71/141 (50%), Gaps = 1/141 (0%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D+++ G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVP
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVP 137
Query: 152 VDIYVPGCPPTAEALIYGILL 172
VD+Y+PGCPPT A +YG +
Sbjct: 138 VDVYIPGCPPTPAATLYGFAM 158
>gi|15803012|ref|NP_289042.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 EDL933]
gi|12516874|gb|AAG57599.1|AE005478_9 hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EDL933]
Length = 252
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|15832605|ref|NP_311378.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
gi|168748455|ref|ZP_02773477.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4113]
gi|168756258|ref|ZP_02781265.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4401]
gi|168761095|ref|ZP_02786102.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4501]
gi|168768578|ref|ZP_02793585.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4486]
gi|168773600|ref|ZP_02798607.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4196]
gi|168778452|ref|ZP_02803459.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4076]
gi|168787832|ref|ZP_02812839.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC869]
gi|168798857|ref|ZP_02823864.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC508]
gi|195936632|ref|ZP_03082014.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EC4024]
gi|208809412|ref|ZP_03251749.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4206]
gi|208811962|ref|ZP_03253291.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4045]
gi|208821226|ref|ZP_03261546.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4042]
gi|209398464|ref|YP_002271958.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4115]
gi|217327671|ref|ZP_03443754.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. TW14588]
gi|254794434|ref|YP_003079271.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. TW14359]
gi|261223078|ref|ZP_05937359.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str.
FRIK2000]
gi|261259370|ref|ZP_05951903.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. FRIK966]
gi|13362821|dbj|BAB36774.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
gi|187770648|gb|EDU34492.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4196]
gi|188017086|gb|EDU55208.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4113]
gi|189003438|gb|EDU72424.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4076]
gi|189356622|gb|EDU75041.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4401]
gi|189362304|gb|EDU80723.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4486]
gi|189368448|gb|EDU86864.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4501]
gi|189372275|gb|EDU90691.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC869]
gi|189378584|gb|EDU97000.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC508]
gi|208729213|gb|EDZ78814.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4206]
gi|208733239|gb|EDZ81926.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4045]
gi|208741349|gb|EDZ89031.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4042]
gi|209159864|gb|ACI37297.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. EC4115]
gi|209763620|gb|ACI80122.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
gi|209763622|gb|ACI80123.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
gi|209763626|gb|ACI80125.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
gi|217320038|gb|EEC28463.1| hydrogenase-4, I subunit [Escherichia coli O157:H7 str. TW14588]
gi|254593834|gb|ACT73195.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. TW14359]
gi|320188821|gb|EFW63480.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. EC1212]
gi|320640993|gb|EFX10477.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. G5101]
gi|326340284|gb|EGD64088.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. 1125]
gi|326344969|gb|EGD68713.1| Hydrogenase-4 component I [Escherichia coli O157:H7 str. 1044]
Length = 252
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|209763618|gb|ACI80121.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
gi|320646275|gb|EFX15202.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H- str. 493-89]
gi|320651780|gb|EFX20160.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H- str. H 2687]
gi|320657166|gb|EFX24975.1| hydrogenase 4, Fe-S subunit [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320667576|gb|EFX34491.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. LSU-61]
Length = 252
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|170682690|ref|YP_001744672.1| hydrogenase-4, I subunit [Escherichia coli SMS-3-5]
gi|218700947|ref|YP_002408576.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI39]
gi|170520408|gb|ACB18586.1| hydrogenase-4, I subunit [Escherichia coli SMS-3-5]
gi|218370933|emb|CAR18752.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI39]
Length = 252
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|270308166|ref|YP_003330224.1| hydrogenase, EchC subunit [Dehalococcoides sp. VS]
gi|270154058|gb|ACZ61896.1| hydrogenase, EchC subunit [Dehalococcoides sp. VS]
Length = 155
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 72/122 (59%), Gaps = 3/122 (2%)
Query: 54 SLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S + F C +E++ P YD+ERFG +P+ SDV++V G + L
Sbjct: 11 SPWLLHFDCGSCNGCDIEILACLTPIYDVERFGIVNMGNPKHSDVLLVTGPANKRNYRVL 70
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
+ +Y QMP+P+ VI +G+C GG +H +++ G D+++PVD+YVPGC EA+I G+
Sbjct: 71 QNLYQQMPDPKVVIVIGTCGCSGGVFHNCPNILGGVDKVIPVDVYVPGCAARPEAIIDGV 130
Query: 171 LL 172
++
Sbjct: 131 VM 132
>gi|323967933|gb|EGB63345.1| NADH ubiquinone oxidoreductase [Escherichia coli M863]
Length = 252
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|323936381|gb|EGB32671.1| NADH ubiquinone oxidoreductase [Escherichia coli E1520]
Length = 252
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|323169072|gb|EFZ54749.1| hydrogenase-4 component I [Shigella sonnei 53G]
Length = 249
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 29 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMP 88
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 89 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 148
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 149 FAVALGLLQQKI 160
>gi|301024711|ref|ZP_07188354.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1]
gi|331664046|ref|ZP_08364956.1| hydrogenase-4 component I [Escherichia coli TA143]
gi|331673944|ref|ZP_08374707.1| hydrogenase-4 component I [Escherichia coli TA280]
gi|300396442|gb|EFJ79980.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 69-1]
gi|331059845|gb|EGI31822.1| hydrogenase-4 component I [Escherichia coli TA143]
gi|331069217|gb|EGI40609.1| hydrogenase-4 component I [Escherichia coli TA280]
Length = 252
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|291283709|ref|YP_003500527.1| Hydrogenase-4, I subunit [Escherichia coli O55:H7 str. CB9615]
gi|209763624|gb|ACI80124.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
gi|290763582|gb|ADD57543.1| Hydrogenase-4, I subunit [Escherichia coli O55:H7 str. CB9615]
gi|320662772|gb|EFX30104.1| hydrogenase 4, Fe-S subunit [Escherichia coli O55:H7 str. USDA
5905]
Length = 252
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|16130414|ref|NP_416984.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|82544938|ref|YP_408885.1| hydrogenase 4 Fe-S subunit [Shigella boydii Sb227]
gi|89109295|ref|AP_003075.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
W3110]
gi|170082099|ref|YP_001731419.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|193068356|ref|ZP_03049319.1| hydrogenase-4, I subunit [Escherichia coli E110019]
gi|238901654|ref|YP_002927450.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952]
gi|300958884|ref|ZP_07170990.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1]
gi|301023874|ref|ZP_07187605.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1]
gi|301644479|ref|ZP_07244476.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1]
gi|307139123|ref|ZP_07498479.1| hydrogenase 4, Fe-S subunit [Escherichia coli H736]
gi|331643106|ref|ZP_08344241.1| hydrogenase-4 component I [Escherichia coli H736]
gi|331653914|ref|ZP_08354915.1| hydrogenase-4 component I [Escherichia coli M718]
gi|2499332|sp|P77668|HYFI_ECOLI RecName: Full=Hydrogenase-4 component I
gi|1788834|gb|AAC75542.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|2668498|gb|AAB88571.1| HyfI [Escherichia coli]
gi|81246349|gb|ABB67057.1| hydrogenase 4 Fe-S subunit [Shigella boydii Sb227]
gi|85675423|dbj|BAA16377.2| hydrogenase 4, Fe-S subunit [Escherichia coli str. K12 substr.
W3110]
gi|169889934|gb|ACB03641.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|192958308|gb|EDV88748.1| hydrogenase-4, I subunit [Escherichia coli E110019]
gi|238861461|gb|ACR63459.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952]
gi|260448432|gb|ACX38854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
DH1]
gi|299880628|gb|EFI88839.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 196-1]
gi|300314486|gb|EFJ64270.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 175-1]
gi|301077224|gb|EFK92030.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 146-1]
gi|315137112|dbj|BAJ44271.1| hydrogenase 4, Fe-S subunit [Escherichia coli DH1]
gi|320185186|gb|EFW59966.1| Hydrogenase-4 component I [Shigella flexneri CDC 796-83]
gi|323941252|gb|EGB37437.1| NADH ubiquinone oxidoreductase [Escherichia coli E482]
gi|331039904|gb|EGI12124.1| hydrogenase-4 component I [Escherichia coli H736]
gi|331048763|gb|EGI20839.1| hydrogenase-4 component I [Escherichia coli M718]
gi|332344309|gb|AEE57643.1| hydrogenase-4, subunit I [Escherichia coli UMNK88]
Length = 252
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|157158565|ref|YP_001463811.1| hydrogenase-4, I subunit [Escherichia coli E24377A]
gi|300922195|ref|ZP_07138331.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1]
gi|301329011|ref|ZP_07222038.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1]
gi|157080595|gb|ABV20303.1| hydrogenase-4, I subunit [Escherichia coli E24377A]
gi|300421434|gb|EFK04745.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 182-1]
gi|300844645|gb|EFK72405.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 78-1]
Length = 252
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|187732837|ref|YP_001881279.1| hydrogenase-4, I subunit [Shigella boydii CDC 3083-94]
gi|187429829|gb|ACD09103.1| hydrogenase-4, I subunit [Shigella boydii CDC 3083-94]
Length = 252
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|295105899|emb|CBL03442.1| ech hydrogenase subunit C [Gordonibacter pamelaeae 7-10-1-b]
Length = 147
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
T S + + C +E++ A P YD+ERFG +P+ +D+ +V G++ +
Sbjct: 5 TKSPWVIHYDGSSCNGCDIEVLAALCPGYDVERFGIINTGNPKHADIFLVTGSVNEQNIK 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
++ +Y+QM EP+ VI+ G CA G +H Y+V+ G D+ +PVD+Y PGC EA+I
Sbjct: 65 VVQEIYNQMVEPKVVIACGICACSAGIFHDCYNVIGGVDQAIPVDVYAPGCAVRPEAIID 124
Query: 169 GILL----LQKK 176
++ L++K
Sbjct: 125 AVVQGLGILEEK 136
>gi|293410884|ref|ZP_06654460.1| hydrogenase 4 [Escherichia coli B354]
gi|284922436|emb|CBG35523.1| hydrogenase-4 component I [Escherichia coli 042]
gi|291471352|gb|EFF13836.1| hydrogenase 4 [Escherichia coli B354]
Length = 252
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|256021825|ref|ZP_05435690.1| hydrogenase 4, Fe-S subunit [Escherichia sp. 4_1_40B]
Length = 252
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|209919965|ref|YP_002294049.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11]
gi|218555015|ref|YP_002387928.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI1]
gi|218696116|ref|YP_002403783.1| hydrogenase 4, Fe-S subunit [Escherichia coli 55989]
gi|309794467|ref|ZP_07688890.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7]
gi|209913224|dbj|BAG78298.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11]
gi|218352848|emb|CAU98647.1| hydrogenase 4, Fe-S subunit [Escherichia coli 55989]
gi|218361783|emb|CAQ99380.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI1]
gi|308121923|gb|EFO59185.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 145-7]
gi|320200049|gb|EFW74638.1| Hydrogenase-4 component I [Escherichia coli EC4100B]
gi|324020088|gb|EGB89307.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 117-3]
gi|324118167|gb|EGC12064.1| NADH ubiquinone oxidoreductase [Escherichia coli E1167]
Length = 252
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|293415752|ref|ZP_06658395.1| hydrogenase-4 component I [Escherichia coli B185]
gi|291433400|gb|EFF06379.1| hydrogenase-4 component I [Escherichia coli B185]
Length = 252
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|24113818|ref|NP_708328.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301]
gi|30063865|ref|NP_838036.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T]
gi|110806420|ref|YP_689940.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401]
gi|24052905|gb|AAN44035.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301]
gi|30042120|gb|AAP17846.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T]
gi|110615968|gb|ABF04635.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401]
gi|281601892|gb|ADA74876.1| Hydrogenase 4 Fe-S subunit [Shigella flexneri 2002017]
gi|332755532|gb|EGJ85896.1| hydrogenase-4 component I [Shigella flexneri K-671]
gi|332756429|gb|EGJ86780.1| hydrogenase-4 component I [Shigella flexneri 2747-71]
gi|333001624|gb|EGK21192.1| hydrogenase-4 component I [Shigella flexneri VA-6]
gi|333002278|gb|EGK21842.1| hydrogenase-4 component I [Shigella flexneri K-272]
gi|333016099|gb|EGK35431.1| hydrogenase-4 component I [Shigella flexneri K-227]
gi|333016345|gb|EGK35676.1| hydrogenase-4 component I [Shigella flexneri K-304]
Length = 252
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRIDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|88603078|ref|YP_503256.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
hungatei JF-1]
gi|88188540|gb|ABD41537.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
hungatei JF-1]
Length = 170
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 47/114 (41%), Positives = 72/114 (63%)
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
+E+ S P YD+ERFG ASPR +D++ V G +T+ M AL + Y+ PEP++VI++
Sbjct: 57 IELANLSAPHYDVERFGITFVASPRHADILAVTGVVTHGMKEALIKTYEATPEPKFVIAV 116
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
G A GG Y +Y+VV D ++PVD+ +PG PPT A++ G+L L ++
Sbjct: 117 GDDACTGGMYIGTYAVVGPVDAVIPVDLKIPGNPPTPAAILEGLLTLMNVAKKR 170
>gi|191169211|ref|ZP_03030966.1| hydrogenase-4, I subunit [Escherichia coli B7A]
gi|190900756|gb|EDV60550.1| hydrogenase-4, I subunit [Escherichia coli B7A]
Length = 252
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVFRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|269215531|ref|ZP_06159385.1| NADH dehydrogenase I, B subunit [Slackia exigua ATCC 700122]
gi|269131018|gb|EEZ62093.1| NADH dehydrogenase I, B subunit [Slackia exigua ATCC 700122]
Length = 147
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 74/124 (59%), Gaps = 3/124 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
+ S + + C +E++ + P YD ERFG +P+ +D+ +V G++ +
Sbjct: 5 SKSPWVIHYDASSCNGCDIEVLASLTPLYDAERFGVINTGNPKHADIFLVTGSVNERNIK 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
++ +YDQM +P+ V+++G CA GG +H Y+V+ G D+ +PVD+YVPGC + E +I
Sbjct: 65 VIQEIYDQMVDPKVVVAVGICACSGGIFHDCYNVIGGVDQAIPVDVYVPGCAASPENIID 124
Query: 169 GILL 172
G++
Sbjct: 125 GVVR 128
>gi|299132789|ref|ZP_07025984.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Afipia sp. 1NLS2]
gi|298592926|gb|EFI53126.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Afipia sp. 1NLS2]
Length = 169
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 52/125 (41%), Positives = 75/125 (60%), Gaps = 1/125 (0%)
Query: 50 ARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
R+ SL + C +E+ S P YDLERFG ASPR +DV++V G +T M
Sbjct: 42 GRSLSLRLVDAGSCNACELELNALSNPYYDLERFGLRFVASPRHADVLLVTGPVTKNMRE 101
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
L R YD MP P++V+++G CA GG Y SY+ RG + ++PV++ + GCPP+ L+
Sbjct: 102 PLLRTYDAMPAPKWVVAVGDCAACGGLYADSYACERGANAVLPVNLRIVGCPPSPTQLLE 161
Query: 169 GILLL 173
G+L L
Sbjct: 162 GLLAL 166
>gi|255525491|ref|ZP_05392428.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
carboxidivorans P7]
gi|296188576|ref|ZP_06856964.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
gi|255510856|gb|EET87159.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
carboxidivorans P7]
gi|296046840|gb|EFG86286.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
Length = 242
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 44/120 (36%), Positives = 70/120 (58%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ YDL R+G ASPR +D ++V G +T M AL + YD + +P
Sbjct: 123 SCNGCMMEVSNTQNTYYDLSRYGIKFAASPRHADGIVVTGPVTLNMKEALIKTYDAISDP 182
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+ VI++GSCA GG + YSV + I+ V++ +PGCPP+ +A++YG+L + K+
Sbjct: 183 KIVIAVGSCAYSGGIFKDGYSVCEDLNEILKVNLVIPGCPPSPQAILYGMLKIINKLDEE 242
>gi|74313015|ref|YP_311434.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046]
gi|157161949|ref|YP_001459267.1| hydrogenase-4, I subunit [Escherichia coli HS]
gi|170019227|ref|YP_001724181.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
ATCC 8739]
gi|194437593|ref|ZP_03069689.1| hydrogenase-4, I subunit [Escherichia coli 101-1]
gi|253772619|ref|YP_003035450.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162463|ref|YP_003045571.1| hydrogenase 4, Fe-S subunit [Escherichia coli B str. REL606]
gi|297519669|ref|ZP_06938055.1| hydrogenase 4, Fe-S subunit [Escherichia coli OP50]
gi|300930126|ref|ZP_07145548.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1]
gi|73856492|gb|AAZ89199.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046]
gi|157067629|gb|ABV06884.1| hydrogenase-4, I subunit [Escherichia coli HS]
gi|169754155|gb|ACA76854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
ATCC 8739]
gi|194423399|gb|EDX39390.1| hydrogenase-4, I subunit [Escherichia coli 101-1]
gi|242378087|emb|CAQ32860.1| hydrogenase 4, small subunit, subunit of hydrogenase 4 [Escherichia
coli BL21(DE3)]
gi|253323663|gb|ACT28265.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974364|gb|ACT40035.1| hydrogenase 4, Fe-S subunit [Escherichia coli B str. REL606]
gi|253978531|gb|ACT44201.1| hydrogenase 4, Fe-S subunit [Escherichia coli BL21(DE3)]
gi|300461970|gb|EFK25463.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 187-1]
gi|323961283|gb|EGB56895.1| NADH ubiquinone oxidoreductase [Escherichia coli H489]
gi|323970989|gb|EGB66238.1| NADH ubiquinone oxidoreductase [Escherichia coli TA007]
Length = 252
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|194432188|ref|ZP_03064477.1| hydrogenase-4, I subunit [Shigella dysenteriae 1012]
gi|194419717|gb|EDX35797.1| hydrogenase-4, I subunit [Shigella dysenteriae 1012]
gi|320180473|gb|EFW55404.1| Hydrogenase-4 component I [Shigella boydii ATCC 9905]
gi|332089845|gb|EGI94946.1| hydrogenase-4 component I [Shigella dysenteriae 155-74]
Length = 252
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|300817746|ref|ZP_07097961.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1]
gi|300529734|gb|EFK50796.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 107-1]
Length = 252
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|296081619|emb|CBI20624.3| unnamed protein product [Vitis vinifera]
Length = 94
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 76/86 (88%), Positives = 81/86 (94%)
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIVAGTLTNKMA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVDIY
Sbjct: 1 MIVAGTLTNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 60
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181
VPGCPPTAEAL+YG+L LQKKI R
Sbjct: 61 VPGCPPTAEALLYGLLQLQKKINRRK 86
>gi|262366272|gb|ACY62829.1| NADH dehydrogenase I chain B [Yersinia pestis D182038]
Length = 145
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 57/103 (55%), Positives = 75/103 (72%), Gaps = 2/103 (1%)
Query: 81 RFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RFG RASPRQ+D M+VAGT KMA ++R+Y+QM EP++VISMG+CAN GG Y
Sbjct: 5 RFGAEVLRASPRQADFMVVAGTCFTKMAPVIQRLYEQMLEPKWVISMGACANSGGMY-DI 63
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGN 182
YSVV+G D+ +PVD+Y+PGCPP EA + +LLLQ+ I +
Sbjct: 64 YSVVQGVDKFLPVDVYIPGCPPRPEAYMQALLLLQESIGKERR 106
>gi|51245172|ref|YP_065056.1| NADH dehydrogenase, subunit 10 [Desulfotalea psychrophila LSv54]
gi|50876209|emb|CAG36049.1| probable NADH dehydrogenase, subunit 10 [Desulfotalea psychrophila
LSv54]
Length = 128
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/112 (56%), Positives = 81/112 (72%), Gaps = 3/112 (2%)
Query: 69 MMQASMPRYDLERFGFA-PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
MM A RYDL RFG R S RQSDVMIVAGT++ KMA ++ +YDQMPEP++VI+MG
Sbjct: 1 MMSAGCARYDLSRFGAEVFRPSARQSDVMIVAGTISKKMAEGIKTLYDQMPEPKWVIAMG 60
Query: 128 SCANGGGYY--HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
+CA GG + Y ++ G D+I+PVDIY+PGCPP EALI GI+ L+ +I
Sbjct: 61 NCAISGGPFVFEGQYGIIEGADKILPVDIYIPGCPPRPEALIEGIIELEHQI 112
>gi|300940269|ref|ZP_07154866.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1]
gi|300454910|gb|EFK18403.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 21-1]
Length = 252
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPVATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|309786198|ref|ZP_07680826.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 1617]
gi|308925943|gb|EFP71422.1| formate hydrogenlyase subunit 7 [Shigella dysenteriae 1617]
Length = 213
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 4/125 (3%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C +E+ P +D ERFG SPR +D+++ G +T M S R + P+P
Sbjct: 5 GCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDP 64
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKK 176
+ IS G+C N GG +H Y V G D+IVPVD+Y+P CPPT A +YG + L++K
Sbjct: 65 KICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPSCPPTPAATLYGFAMALGLLEQK 124
Query: 177 IRRVG 181
I G
Sbjct: 125 IHARG 129
>gi|332092719|gb|EGI97788.1| hydrogenase-4 component I [Shigella boydii 3594-74]
Length = 227
Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 7 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 66
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 67 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 126
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 127 FAVALGLLQQKI 138
>gi|298504862|gb|ADI83585.1| Ech-hydrogenase-related complex, small subunit [Geobacter
sulfurreducens KN400]
Length = 251
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 64/118 (54%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + S +DL RFG ASPR +D + V G +T M AL ++ +P P
Sbjct: 132 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTENMREALLMTWEAIPAP 191
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+ V++ G+CA GGG + S G I+PVD+++PGCPP ++ G+L L +I
Sbjct: 192 KIVVACGACAIGGGPFAGSPEAHNGVADILPVDLFIPGCPPHPATILDGLLRLIGRIE 249
>gi|189425610|ref|YP_001952787.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
SZ]
gi|189421869|gb|ACD96267.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
SZ]
Length = 252
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 67/117 (57%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + + +DL RFG ASPR +D + V G ++ M AL + ++ +P P
Sbjct: 135 GCNACEADSNVLTTIGWDLGRFGIQFVASPRHADGIWVTGPVSENMREALLKTWEAIPAP 194
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
+ V++ G+CA GG + S + G D ++PVD+Y+PGCPP ++ G+L LQ ++
Sbjct: 195 KIVVACGACAIAGGPFSGSPQISLGLDTLLPVDLYIPGCPPHPATILDGLLRLQGRL 251
>gi|197286367|ref|YP_002152239.1| hydrogenase-4 component I [Proteus mirabilis HI4320]
gi|227357421|ref|ZP_03841775.1| hydrogenase-4 component I [Proteus mirabilis ATCC 29906]
gi|194683854|emb|CAR44984.1| hydrogenase-4 component I [Proteus mirabilis HI4320]
gi|227162379|gb|EEI47379.1| hydrogenase-4 component I [Proteus mirabilis ATCC 29906]
Length = 260
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 51/139 (36%), Positives = 78/139 (56%), Gaps = 5/139 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T +M
Sbjct: 35 RSAYVYRVDCGGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTRQMRVP 94
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+P+ IS G+C GGG +H Y V G + IVP+D+++PGCPPT A IYG
Sbjct: 95 ALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSETIVPIDVWIPGCPPTPAATIYG 154
Query: 170 IL----LLQKKIRRVGNVK 184
LL +K++ + +
Sbjct: 155 FAVALGLLDQKLKGQNHTE 173
>gi|282165307|ref|YP_003357692.1| putative [NiFe]-hydrogenase small subunit [Methanocella paludicola
SANAE]
gi|282157621|dbj|BAI62709.1| putative [NiFe]-hydrogenase small subunit [Methanocella paludicola
SANAE]
Length = 136
Score = 145 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 5/130 (3%)
Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S G C +E++ PRYDLER G ASPR +D+++V G +
Sbjct: 6 KKSPWIYHAHAGGCVGCDIELLACMGPRYDLERLGIKWVASPRYADILLVTGPVPLHTKP 65
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
L RVY Q PEP+ VI+MG+C G + +YS+ ++I+PVD+ +PGCPP EA+
Sbjct: 66 FLERVYAQTPEPKRVIAMGACGTSCGVFIDDENYSIAGPVEKIIPVDVKIPGCPPKPEAI 125
Query: 167 IYGILLLQKK 176
I GIL + +K
Sbjct: 126 IDGILKVMRK 135
>gi|212710435|ref|ZP_03318563.1| hypothetical protein PROVALCAL_01497 [Providencia alcalifaciens DSM
30120]
gi|212686855|gb|EEB46383.1| hypothetical protein PROVALCAL_01497 [Providencia alcalifaciens DSM
30120]
Length = 260
Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 49/136 (36%), Positives = 74/136 (54%), Gaps = 1/136 (0%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T
Sbjct: 30 LKDIKRSAYVYRVDCGGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTR 89
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
M R Y+ P+P+ IS G+C GGG +H Y V G + IVP+D+++PGCPPT
Sbjct: 90 AMRMPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSEHIVPIDVWIPGCPPTPA 149
Query: 165 ALIYGILLLQKKIRRV 180
A IYG + +++
Sbjct: 150 ATIYGFAVALGLLKQK 165
>gi|319790466|ref|YP_004152099.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans
HB-1]
gi|317114968|gb|ADU97458.1| NADH-quinone oxidoreductase, B subunit [Thermovibrio ammonificans
HB-1]
Length = 156
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 81/137 (59%)
Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
+ W+R S + F CC++E++ PR+D ER+GF SPRQ+D +IV G ++
Sbjct: 4 KFFDWSRANSPWGVHFCSGCCSLEVLALMGPRFDWERYGFMMTPSPRQADFIIVTGLVSR 63
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
K+ L RVY QMPEPRYV MG+CA GGG Y S V + +P D++V GCPP E
Sbjct: 64 KVLPVLLRVYQQMPEPRYVFGMGACAAGGGPYWDSDFVAVDVSQYIPFDVFVAGCPPNPE 123
Query: 165 ALIYGILLLQKKIRRVG 181
A + G L L++ I R
Sbjct: 124 ATLEGFLRLKEIILRDR 140
>gi|82777869|ref|YP_404218.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197]
gi|81242017|gb|ABB62727.1| hydrogenase 4 Fe-S subunit [Shigella dysenteriae Sd197]
Length = 252
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWLPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|126465960|ref|YP_001041069.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Staphylothermus
marinus F1]
gi|126014783|gb|ABN70161.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Staphylothermus
marinus F1]
Length = 159
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 13/142 (9%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S+ C +E++ A P +D+ERFG ASPR +D++++ G +T K
Sbjct: 9 KKSIWVFHLNTGSCNACDIEILDALTPYFDVERFGIKLVASPRHADLVLLTGPITLKTLP 68
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI--------VPVD--IYVPG 158
+ +P PRYV+++G+CA GGG ++ SYSV+ G D + + +D +YVPG
Sbjct: 69 KVINALRAVPRPRYVMAIGACAVGGGIWYDSYSVIGGVDELKKILEEYGIEIDKIVYVPG 128
Query: 159 CPPTAEALIYGILLLQKKIRRV 180
CP EA+IYG+ LL +++
Sbjct: 129 CPARPEAIIYGVALLLGLVKQK 150
>gi|325295363|ref|YP_004281877.1| NADH-quinone oxidoreductase, B subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065811|gb|ADY73818.1| NADH-quinone oxidoreductase, B subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 156
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 60/138 (43%), Positives = 84/138 (60%)
Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
+ + W+R S + F CC++E++ PR+D ER+GF SPRQ+D +IV G ++
Sbjct: 4 KFLDWSRANSPWGVHFCSGCCSLEVLALMGPRFDWERYGFMMTPSPRQADFIIVTGLVSK 63
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
K+ L RVY QMPEPRYV MG+CA GGG Y S V + +P DI+V GCPP E
Sbjct: 64 KVLPVLLRVYQQMPEPRYVFGMGACAGGGGPYWDSDFVAVDVSQYIPFDIFVTGCPPNPE 123
Query: 165 ALIYGILLLQKKIRRVGN 182
A + G+L L++ I + N
Sbjct: 124 ATLEGLLKLKEIILKNKN 141
>gi|139439383|ref|ZP_01772824.1| Hypothetical protein COLAER_01843 [Collinsella aerofaciens ATCC
25986]
gi|133775162|gb|EBA38982.1| Hypothetical protein COLAER_01843 [Collinsella aerofaciens ATCC
25986]
Length = 195
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 74/135 (54%), Gaps = 3/135 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
+ S + + C +E++ + P +D ERFG +P+ +D+ +V G++ +
Sbjct: 6 SRSPWVIHYDGSSCNGCDIEVLASLTPLFDAERFGVVNTGNPKHADIFLVTGSVNAQNLP 65
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
+R++Y+QM EP+ V++ G CA GG + +Y+V+ G DR +PVD+Y PGC E +I
Sbjct: 66 VVRQIYNQMLEPKCVVACGICACSGGVFRDAYNVIGGVDRAIPVDVYAPGCAIRPETVID 125
Query: 169 GILLLQKKIRRVGNV 183
I+ + + V
Sbjct: 126 AIVEACGILDQKEAV 140
>gi|257791323|ref|YP_003181929.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eggerthella lenta
DSM 2243]
gi|317490460|ref|ZP_07948942.1| NADH ubiquinone oxidoreductase [Eggerthella sp. 1_3_56FAA]
gi|325831504|ref|ZP_08164758.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Eggerthella sp.
HGA1]
gi|257475220|gb|ACV55540.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eggerthella lenta
DSM 2243]
gi|316910453|gb|EFV32080.1| NADH ubiquinone oxidoreductase [Eggerthella sp. 1_3_56FAA]
gi|325486758|gb|EGC89206.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Eggerthella sp.
HGA1]
Length = 147
Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
T S + + C +E++ A P +D+ERFG +P+ +D+ +V G++ +
Sbjct: 5 TKSPWVIHYDGSSCNGCDIEVLAALCPGFDVERFGIINTGNPKHADIFLVTGSVNEQNIG 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
++ +Y+QM EP+ VI+ G CA G +H Y+V+ G D+ +PVD+Y PGC EA+I
Sbjct: 65 VVQEIYNQMVEPKVVIACGICACSAGIFHDCYNVIGGVDQAIPVDVYAPGCAVRPEAIID 124
Query: 169 GILL----LQKK 176
++ L++K
Sbjct: 125 AVVQGLGILEEK 136
>gi|224370960|ref|YP_002605124.1| HyfI [Desulfobacterium autotrophicum HRM2]
gi|223693677|gb|ACN16960.1| HyfI [Desulfobacterium autotrophicum HRM2]
Length = 258
Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 45/117 (38%), Positives = 64/117 (54%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + +DL RFG ASPR +D ++V G +T M +AL++ YD +P P
Sbjct: 142 GCNACEADTNVLGTIGWDLARFGIDFVASPRHADGLLVTGPVTRNMETALKKTYDALPSP 201
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
+ VI+ G+CA GG Y G D I+PVD+Y+PGCPP ++ +L KI
Sbjct: 202 KIVIATGACAISGGPYAGHAQQHNGVDAILPVDLYIPGCPPHPFTILEALLCYLGKI 258
>gi|90422453|ref|YP_530823.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris BisB18]
gi|90104467|gb|ABD86504.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris BisB18]
Length = 174
Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 9/151 (5%)
Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTW--ARTGSLMWMTF-GLACCAVEMMQA 72
E A E+ TS+ L R+ S+ + C +E+
Sbjct: 12 RPHTEPAPALDPAAVEELA------TSLGDLARRRLGRSLSIREVDAGSCNGCELEIHAL 65
Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
S YD+ERFG ASPR +DV++V G +T M AL+ Y+ P P++V+++G CA
Sbjct: 66 SNAYYDVERFGIRFVASPRHADVLLVTGPVTKNMRDALKATYEATPSPKWVVALGDCAKD 125
Query: 133 GGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
GG + SY+V G ++PVD+++PGCPP
Sbjct: 126 GGCFAASYAVEGGVSAVIPVDLHIPGCPPPP 156
>gi|309784775|ref|ZP_07679408.1| hydrogenase-4 component I [Shigella dysenteriae 1617]
gi|308927145|gb|EFP72619.1| hydrogenase-4 component I [Shigella dysenteriae 1617]
Length = 231
Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 11 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 70
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 71 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWLPGCPPTPAATIHG 130
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 131 FAVALGLLQQKI 142
>gi|332087933|gb|EGI93058.1| hydrogenase-4 component I [Shigella boydii 5216-82]
Length = 252
Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +S R +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVISSLRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|320176266|gb|EFW51327.1| Hydrogenase-4 component I [Shigella dysenteriae CDC 74-1112]
Length = 224
Score = 144 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|300921421|ref|ZP_07137781.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1]
gi|300411655|gb|EFJ94965.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 115-1]
Length = 176
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
R Y+ P+ + +S G+C GGG +H YSV G D IVP+D+++PGCPPT A I+G
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHG 151
Query: 170 IL----LLQKKI 177
LLQ+KI
Sbjct: 152 FAVALGLLQQKI 163
>gi|254173148|ref|ZP_04879821.1| hydrogenase-4 component i [Thermococcus sp. AM4]
gi|214032557|gb|EEB73386.1| hydrogenase-4 component i [Thermococcus sp. AM4]
Length = 276
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 81/151 (53%), Gaps = 21/151 (13%)
Query: 51 RTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R S+ C +E++ P YDLER G +PR +D + + G LT +
Sbjct: 4 RLKSVWVYHVDAGSCNGCDIEVLDVLSPYYDLERLGIKVVPNPRHADALFITGPLTRQTR 63
Query: 108 SALRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVV-------------RGCDRIVPVD 153
L++ Y+ M P+PR V+++G+CA+ GG ++ SY++ G + IVP+D
Sbjct: 64 IMLKKAYEAMPPKPRIVVAIGTCASSGGIFYNSYALYNTSPQRGRDRLRSGGPEMIVPID 123
Query: 154 IYVPGCPPTAEALIYGILLL----QKKIRRV 180
+Y+PGCPP+ E ++YG+ L +KK++
Sbjct: 124 MYIPGCPPSPEEILYGVAQLLGIKEKKMKGE 154
>gi|258593559|emb|CBE69900.1| HycG protein [NC10 bacterium 'Dutch sediment']
Length = 172
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 47/116 (40%), Positives = 67/116 (57%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P YDLERFG ASPR +D ++V G +T MA L+R YD P+P
Sbjct: 55 SCNGCELEIGALNNPYYDLERFGMHFVASPRHADCLLVTGPVTRNMADPLKRTYDATPDP 114
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
+ V+++G CA G + Y VV IVPVD+ V GCPP+ ++ GIL ++
Sbjct: 115 KIVVAVGDCARDCGIFAGGYGVVGPVSAIVPVDVVVGGCPPSPSMILAGILAALER 170
>gi|240102300|ref|YP_002958608.1| formate hydrogenlyase I subunit H (Mhy1H) [Thermococcus
gammatolerans EJ3]
gi|239909853|gb|ACS32744.1| formate hydrogenlyase I subunit H (Mhy1H) [Thermococcus
gammatolerans EJ3]
Length = 277
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 82/151 (54%), Gaps = 21/151 (13%)
Query: 51 RTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R S+ C +E++ P YDLER G +PR +D + + G LT +
Sbjct: 5 RLKSVWVYHVDAGSCNGCDIEVLDVLSPYYDLERLGVKVVPNPRHADALFITGPLTRQTR 64
Query: 108 SALRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVV-------------RGCDRIVPVD 153
AL++ Y+ M P+PR V+++G+CA+ GG ++ SY++ G + IVP+D
Sbjct: 65 IALKKAYEAMPPKPRIVVAVGTCASSGGIFYNSYALYNTSPQRGRDRLRSGGPEMIVPID 124
Query: 154 IYVPGCPPTAEALIYGILLL----QKKIRRV 180
+Y+PGCPP+ E ++YG+ L +KK++
Sbjct: 125 MYIPGCPPSPEEILYGVAQLLGIKEKKMKGE 155
>gi|291519870|emb|CBK75091.1| ech hydrogenase subunit C [Butyrivibrio fibrisolvens 16/4]
Length = 147
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 54 SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S + + C +E++ + P YD+ERFG +P +D+ ++ G + ++ + +
Sbjct: 7 SPWLLHYDGSSCNGCDIEVLACTTPVYDVERFGVINTGNPMHADIFLITGGINSQNEAVV 66
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
+++Y+QMP+P+ VI++G+CA GG + Y++ G D ++PVDIYVPGC E++I G+
Sbjct: 67 KQIYEQMPQPKVVIAVGTCACTGGIFKECYNIKGGADTVIPVDIYVPGCAARPESIIDGV 126
Query: 171 LL 172
+
Sbjct: 127 VK 128
>gi|256810299|ref|YP_003127668.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
fervens AG86]
gi|256793499|gb|ACV24168.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
fervens AG86]
Length = 148
Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
Query: 51 RTGSLMW-MTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R S+ + C C +E++ PRYD+E++G +PR++DV++V G +T + A
Sbjct: 7 RKRSIHVCVVNTGGCNGCDIEIVSCLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWA 66
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
L+ +Y++ PEP+ V+++G+CA GG + VV G D+++PVD +PGCPP +I
Sbjct: 67 ERLKEIYEKTPEPKVVVAVGACALSGGIFKEG-HVVGGVDKVIPVDAKIPGCPPRPSEII 125
Query: 168 YGILLLQKK--IRRVGNVK 184
+L + K R +K
Sbjct: 126 EAVLKVAPKAIAMREKKLK 144
>gi|15668695|ref|NP_247494.1| carbon monoxide dehydrogenase hydrogenase subunit CooL
[Methanocaldococcus jannaschii DSM 2661]
gi|38503282|sp|Q57936|Y516_METJA RecName: Full=Uncharacterized protein MJ0516
gi|2826290|gb|AAB98505.1| carbon monoxide dehydrogenase, hydrogenase subunit CooL (cooL)
[Methanocaldococcus jannaschii DSM 2661]
Length = 148
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
Query: 51 RTGSLMW-MTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R S+ + C C +E++ PRYD+E++G +PR++DV++V G +T + A
Sbjct: 7 RKRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWA 66
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
L+ +Y++ PEP+ V+++G+CA GG + VV G D+++PVD +PGCPP +I
Sbjct: 67 ERLKEIYEKTPEPKIVVAVGACALSGGIFKEG-HVVGGVDKVIPVDAKIPGCPPRPSEII 125
Query: 168 YGILLLQKK--IRRVGNVK 184
IL + K R +K
Sbjct: 126 ETILKVAPKAIAMREKRLK 144
>gi|2127915|pir||D64364 formate hydrogenlyase, subunit 7 - Methanococcus jannaschii
Length = 153
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/139 (34%), Positives = 80/139 (57%), Gaps = 6/139 (4%)
Query: 51 RTGSLMW-MTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R S+ + C C +E++ PRYD+E++G +PR++DV++V G +T + A
Sbjct: 12 RKRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQWA 71
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
L+ +Y++ PEP+ V+++G+CA GG + VV G D+++PVD +PGCPP +I
Sbjct: 72 ERLKEIYEKTPEPKIVVAVGACALSGGIFKEG-HVVGGVDKVIPVDAKIPGCPPRPSEII 130
Query: 168 YGILLLQKK--IRRVGNVK 184
IL + K R +K
Sbjct: 131 ETILKVAPKAIAMREKRLK 149
>gi|320450490|ref|YP_004202586.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, precursor
[Thermus scotoductus SA-01]
gi|320150659|gb|ADW22037.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, precursor
[Thermus scotoductus SA-01]
Length = 262
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 48/113 (42%), Positives = 74/113 (65%)
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
E+ P D+ RFGF ASPR +D ++V G ++ MA ALRR Y+ MPEP+ V+++G
Sbjct: 143 EIALLGNPFNDMGRFGFQVVASPRHADALLVTGPVSRNMAEALRRTYEAMPEPKGVVAVG 202
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+ A GG + S V+ G D++VPVD+YVPG PP A+++G++LL ++ +
Sbjct: 203 NEAISGGVFAGSPQVLSGVDQVVPVDVYVPGDPPRPGAILHGLMLLVGRMTQR 255
>gi|289191770|ref|YP_003457711.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
sp. FS406-22]
gi|288938220|gb|ADC68975.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
sp. FS406-22]
Length = 148
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 80/144 (55%), Gaps = 6/144 (4%)
Query: 46 LVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ + R S+ C +E++ PRYD+E++G +PR++DV+++ G +
Sbjct: 2 VKEFLRKRSIHVCVINTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLITGPV 61
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T + A L+ +Y++ PEP+ V+++G+CA GG + VV G D+++PVD +PGCPP
Sbjct: 62 TLQWAERLKEIYEKTPEPKIVVAVGACALSGGIFKEG-HVVGGVDKVIPVDAKIPGCPPR 120
Query: 163 AEALIYGILLLQKK--IRRVGNVK 184
+I IL + K R +K
Sbjct: 121 PSEIIETILKVAPKAIAMREKKLK 144
>gi|256827153|ref|YP_003151112.1| ech hydrogenase subunit C [Cryptobacterium curtum DSM 15641]
gi|256583296|gb|ACU94430.1| ech hydrogenase subunit C [Cryptobacterium curtum DSM 15641]
Length = 181
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 75/132 (56%), Gaps = 7/132 (5%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
+ S + + C +E++ A P +D ERFG +P+ +D+++V G++ +
Sbjct: 5 SKSPWVIHYDASSCNGCDIEVLAALCPGFDAERFGVINTGNPKHADILLVTGSVNERNIK 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
++ +Y+QM EP+ V++ G CA GG +H Y+V+ G + VPVD+Y PGC EA+I
Sbjct: 65 VVQELYNQMIEPKAVVACGCCACTGGVFHDCYNVIGGVENAVPVDVYAPGCAIRPEAIID 124
Query: 169 GILL----LQKK 176
++ L++K
Sbjct: 125 AVVEAVGILEEK 136
>gi|147920954|ref|YP_685238.1| [NiFe]-hydrogenase, small subunit (EchC-like) [uncultured
methanogenic archaeon RC-I]
gi|110620634|emb|CAJ35912.1| [NiFe]-hydrogenase, small subunit (EchC-like) [uncultured
methanogenic archaeon RC-I]
Length = 135
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
Query: 47 VTWARTGSLMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
+ + ++ C C +E++ + PRYDLER G SPR +DV++V G +
Sbjct: 1 MNMIKRSPWVYHAHAGGCVGCDIELVASMGPRYDLERLGVRLVPSPRYADVLLVTGPVPL 60
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVDIYVPGCPPT 162
L RVY Q PEP+ VI++G+C G + +YS+ D+I+PVD+ +PGCPP
Sbjct: 61 HTKPFLERVYAQTPEPKRVIAIGACGCSCGVFIDDENYSIAGPVDKIIPVDVKIPGCPPK 120
Query: 163 AEALIYGILLLQKK 176
EA++ GI+ + +
Sbjct: 121 PEAIMEGIIKVLRM 134
>gi|308271021|emb|CBX27631.1| hypothetical protein N47_H24530 [uncultured Desulfobacterium sp.]
Length = 263
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ R+ L ++ G C + S +D+ RFG ASPR +D +++ G +T M
Sbjct: 125 FGRSLKLRQVSAGGCNACEADSNVLSTLAWDMGRFGIQFVASPRHADGLLITGPVTENMR 184
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
AL + Y +PEP+ VI++GSCA GG + G IVPVD+++PGCPP ++
Sbjct: 185 IALEKTYAAVPEPKIVIAVGSCAISGGPFIDHPEQHNGAMDIVPVDLFIPGCPPHPLTIL 244
Query: 168 YGILLLQKKIRR 179
G+L +I+
Sbjct: 245 DGLLRFIGRIKN 256
>gi|91780242|ref|YP_555449.1| putative hydrogenase/oxidoreductase subunit [Burkholderia
xenovorans LB400]
gi|91692902|gb|ABE36099.1| Putative hydrogenase/oxidoreductase subunit [Burkholderia
xenovorans LB400]
Length = 175
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 70/124 (56%), Gaps = 1/124 (0%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P Y+LE G ASPR +D+++V G LT M A+R Y+ P+P
Sbjct: 53 SCNGCELEIHALNNPYYNLEGLGIRFVASPRHADMLLVTGPLTVNMTEAVRLAYEATPDP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+ V++ G CA GG + SY+V +++PVD+ +PGCPP ++ GIL + ++R
Sbjct: 113 KLVVATGECACTGGMFKESYAVCGPLAKLLPVDVTIPGCPPPPLDILRGILGALR-VKRT 171
Query: 181 GNVK 184
+
Sbjct: 172 TRAR 175
>gi|53804774|ref|YP_113607.1| hydrogenase subunit [Methylococcus capsulatus str. Bath]
gi|53758535|gb|AAU92826.1| hydrogenase subunit [Methylococcus capsulatus str. Bath]
Length = 169
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 70/116 (60%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P YD+ER+G ASPR +DV++V G ++ M +AL+ ++ PEP
Sbjct: 54 SCNACELEIAALGNPFYDIERYGVHFVASPRHADVLMVTGPVSRHMQAALQATWEATPEP 113
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
++V+++GSCA GG + +Y+ ++PVD +PGCPPT L+ G+L L +
Sbjct: 114 KWVVAVGSCAADGGEFGVNYASCGAVGNVLPVDAVIPGCPPTPTDLVRGLLSLISR 169
>gi|239616971|ref|YP_002940293.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia
TBF 19.5.1]
gi|239505802|gb|ACR79289.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Kosmotoga olearia
TBF 19.5.1]
Length = 137
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 3/129 (2%)
Query: 52 TGSLMWMTF---GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
SL C +E++ PRYDLERFG S R +DV++V G K++
Sbjct: 9 KRSLWVFHVSASPCNNCDIEILDMLTPRYDLERFGIKLVGSVRHADVLLVTGMGGCKVSE 68
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
+ R+Y+Q P+P +VI++G+C G + SY+ DR VPVD+Y+PGCPP E +I
Sbjct: 69 RVIRIYNQAPKPVFVIAVGTCPVAGATFKESYTRCGPLDRFVPVDLYIPGCPPKPETMIA 128
Query: 169 GILLLQKKI 177
G+ L ++
Sbjct: 129 GLSELLGRL 137
>gi|258514106|ref|YP_003190328.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfotomaculum
acetoxidans DSM 771]
gi|257777811|gb|ACV61705.1| Hydrogenase, small subunit-like protein [Desulfotomaculum
acetoxidans DSM 771]
Length = 236
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 71/117 (60%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E+ + P YD++++G ASPR +D+++V G +T + AL + Y+ P P
Sbjct: 120 ACNGCDFEINSMTNPVYDIQQYGVDFVASPRHADMLLVTGVVTRNLEIALHKTYEACPRP 179
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
V+++G+CA GGG + +Y+ G D+ +PVD+YVPGCPPT +I GIL ++
Sbjct: 180 ALVVAVGACACGGGVFKEAYASGGGVDKFLPVDVYVPGCPPTPAQIIKGILTAIGRL 236
>gi|167839774|ref|ZP_02466458.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis MSMB43]
Length = 174
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 66/118 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P
Sbjct: 53 SCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+ V++ G CA GG + SY+V + +VPVDI +PGCPP L+ GI +++R
Sbjct: 113 KLVVAAGDCACTGGVFAGSYAVCGPVETLVPVDIAIPGCPPRPLDLLRGIRSALERVR 170
>gi|224538211|ref|ZP_03678750.1| hypothetical protein BACCELL_03102 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520179|gb|EEF89284.1| hypothetical protein BACCELL_03102 [Bacteroides cellulosilyticus
DSM 14838]
Length = 104
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 47/88 (53%), Positives = 68/88 (77%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
D+++V GT+TNKMA L+R+YDQMP+P+YV+++G CA GG + SY VV G D+I+PVD
Sbjct: 1 DMIMVCGTITNKMAPVLKRLYDQMPDPKYVVAVGGCAVSGGPFKKSYHVVNGVDKILPVD 60
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVG 181
+Y+PGCPP EA YG++ LQ+K++
Sbjct: 61 VYIPGCPPRPEAFYYGMMQLQRKVKIEK 88
>gi|294634805|ref|ZP_06713329.1| hydrogenase-4 component I [Edwardsiella tarda ATCC 23685]
gi|291091773|gb|EFE24334.1| hydrogenase-4 component I [Edwardsiella tarda ATCC 23685]
Length = 205
Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 4/111 (3%)
Query: 74 MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
P +D ERFG ASPR +D+++ G +T M R Y P+P+ VIS G+C G
Sbjct: 1 SPLFDAERFGIKVVASPRHADILLFTGAVTRAMRVPALRAYQSAPDPKIVISYGACGCSG 60
Query: 134 GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIRRV 180
G +H Y V G D+IVPVD+Y+PGCPPT A +YG LL +K++
Sbjct: 61 GIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAVALGLLDQKLKAE 111
>gi|289433303|ref|YP_003463176.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
GT]
gi|288947023|gb|ADC74720.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
GT]
Length = 181
Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA-VEMMQASMPRYD 78
K+ +E GF + S + + R+ ++ + G A +E+ S P YD
Sbjct: 21 PKICKQMPLGDAEFDKLGFALKSEINTI-FGRSLAIRALDSGSDNSAEIELNNLSNPYYD 79
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
+ERFG + ASPR +D++IV G +T MA A+R+ +D MP P+ VI++G A GG
Sbjct: 80 VERFGISFVASPRHADILIVTGAVTQNMAIAVRKTFDAMPSPKLVIALGDDACSGGIASG 139
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
Y V+ G D+I+PV++ +PG PP +I +L L + +R+
Sbjct: 140 GYGVLGGVDKILPVNLKIPGNPPEPAQIINALLGLMQSLRKK 181
>gi|218670928|ref|ZP_03520599.1| NuoB2 NADH I chain B [Rhizobium etli GR56]
Length = 117
Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 61/114 (53%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 31 SEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP 90
+ L T+ D +++W+R +L TFG+ACCA+EM+ A RYDL+RFG R SP
Sbjct: 5 NNAIRDSVLFTTADSIISWSRRSALWPETFGIACCAIEMISAGCARYDLDRFGVVFRPSP 64
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
RQSDVMI+AGT+T K A +RR+YDQMPEPR+VI+MG+CA GG Y+ +Y+VV+
Sbjct: 65 RQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVIAMGTCAISGGVYN-TYAVVQ 117
>gi|312113082|ref|YP_004010678.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium
vannielii ATCC 17100]
gi|311218211|gb|ADP69579.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodomicrobium
vannielii ATCC 17100]
Length = 175
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 66/115 (57%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P YD+ERFG ASPR +DV++V G ++ M L R Y P+P
Sbjct: 54 SCNACELEIHALGNPVYDVERFGLKFVASPRHADVLLVTGAVSWNMREGLERTYAATPDP 113
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
++V++ G CA G G + S + +I+PVD+ +PGCPPT L+ G+L L +
Sbjct: 114 KWVVAAGDCAAGCGVFAESRACAGAVAKIIPVDLVIPGCPPTPTDLLKGLLALVE 168
>gi|320101917|ref|YP_004177508.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida
ATCC 43644]
gi|319749199|gb|ADV60959.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida
ATCC 43644]
Length = 257
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ R+ L ++ G C ++ + +DL RFG ASPR +D +++ G +T M
Sbjct: 122 FGRSLKLRQVSAGGCNGCEADVNVLNTVVFDLGRFGIQFVASPRHADGLLITGPVTKNMV 181
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
AL + ++ +P P+ VI++G+CA GG + G D ++PVD+Y+PGCPP ++
Sbjct: 182 LALEKSHEAVPAPKIVIAVGACAISGGPFAGHAEQSNGADDVLPVDLYIPGCPPHPLTIL 241
Query: 168 YGILLLQKKI 177
G+L L K+
Sbjct: 242 DGLLRLLDKL 251
>gi|315230909|ref|YP_004071345.1| NADH-ubiquinone oxidoreductase subunit B [Thermococcus barophilus
MP]
gi|315183937|gb|ADT84122.1| NADH-ubiquinone oxidoreductase chain B [Thermococcus barophilus MP]
Length = 192
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Query: 54 SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
SL C +E++ P+ D+ERFG SPR +D + G +T + +
Sbjct: 5 SLWVFHLNSGSCNGCDIEILNIFAPKQDVERFGIKLVGSPRHADAIAFTGPVTRECLPKV 64
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI-----------VPVDIYVPGC 159
+ +PEP+ V+++GSCA GGG ++ +Y+V+ G + P IY+PGC
Sbjct: 65 IEAFKAVPEPKIVLAIGSCACGGGIWYDTYAVIGGVKELYKILKEEYGIEPPTTIYIPGC 124
Query: 160 PPTAEALIYGILLLQKKIRRVGNVK 184
PP EA+IY + + + +++ +
Sbjct: 125 PPKPEAIIYAVAMARGLVKQKQKRE 149
>gi|302039526|ref|YP_003799848.1| putative formate hydrogenlyase small subunit [Candidatus Nitrospira
defluvii]
gi|300607590|emb|CBK43923.1| putative Formate hydrogenlyase, small subunit [Candidatus
Nitrospira defluvii]
Length = 173
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 43/115 (37%), Positives = 65/115 (56%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +EM + P YD+ERFG ASPR +D ++V G +T M AL+ VY +P
Sbjct: 52 SCNACEMEMNALANPVYDVERFGVHIAASPRHADALVVTGPVTVNMERALKDVYKATADP 111
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ VI++G CA G + SY+V DR +PVD+ + GCPP ++ + L++
Sbjct: 112 KIVIALGDCAVNCGMFKGSYAVTGPVDRHIPVDVRISGCPPRPAEILAVLAKLRQ 166
>gi|118578783|ref|YP_900033.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
propionicus DSM 2379]
gi|118501493|gb|ABK97975.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
propionicus DSM 2379]
Length = 252
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 43/118 (36%), Positives = 65/118 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + S +DL RFG ASPR +D + + G ++ M AL Y +P+P
Sbjct: 135 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLFITGPVSENMRLALLDTYAAIPDP 194
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+ VI G+CA GG + V G D ++ VD+Y+PGCPP+ ++ G+L L ++IR
Sbjct: 195 KLVIVTGACAINGGPFKDHDEVCNGADGLLAVDLYIPGCPPSPLTILDGLLRLIRRIR 252
>gi|23015497|ref|ZP_00055271.1| COG3260: Ni,Fe-hydrogenase III small subunit [Magnetospirillum
magnetotacticum MS-1]
Length = 180
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 47/106 (44%), Positives = 67/106 (63%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P YDLERFG ASPR +DV++V G +T M ALRR + PEP
Sbjct: 59 SCNGCELEIHAVNHPIYDLERFGIRFVASPRHADVLLVTGPVTRNMEEALRRTVEATPEP 118
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
R++++MG C GG + SY+VV G +VPVD+++PGCPP+ +
Sbjct: 119 RWIVAMGDCGKDGGCFAGSYAVVGGVSDVVPVDLHIPGCPPSPRQI 164
>gi|296109961|ref|YP_003616910.1| hypothetical protein Metin_1296 [Methanocaldococcus infernus ME]
gi|295434775|gb|ADG13946.1| hypothetical protein Metin_1296 [Methanocaldococcus infernus ME]
Length = 146
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
Query: 49 WARTGSLMW-MTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
+ R SL + C C VE++ PRYDLE++G +PR++D+++V+G +T +
Sbjct: 4 FFRKRSLHLCLINTGGCNGCDVEVLSCLAPRYDLEQYGIYFHNNPREADILVVSGPVTLQ 63
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
++ +Y+++PEP+ VI++G+CA GG + +G I+PVD VPGCPP
Sbjct: 64 WKERIKELYEKVPEPKIVIALGACALSGGIFKEG-HTCKGVLNILPVDAKVPGCPPKPAE 122
Query: 166 LIYGILLLQKKIRRVGNVKC 185
+I IL + K+ KC
Sbjct: 123 IIKAILKVAPKLIAEREKKC 142
>gi|224087817|ref|XP_002194923.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase Fe-S protein 7
[Taeniopygia guttata]
Length = 183
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 71/151 (47%), Positives = 86/151 (56%), Gaps = 39/151 (25%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS 93
+ +++ +D LV WAR SL MTFGLACCAVEMM + PRYD++RFG RASPRQ+
Sbjct: 67 SRGEYVIAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQA 126
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD 153
DVMIVAGTLTNKMA ALR+ P RG
Sbjct: 127 DVMIVAGTLTNKMAPALRK----KPP-----------------------CRG-------- 151
Query: 154 IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
CPPTAEAL+YGIL LQ+KI+R ++
Sbjct: 152 ----RCPPTAEALLYGILQLQRKIKREKRMQ 178
>gi|320355287|ref|YP_004196626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus
propionicus DSM 2032]
gi|320123789|gb|ADW19335.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus
propionicus DSM 2032]
Length = 248
Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ R+ L ++ G C + + P +DL RFG ASPR +D + V G +T M
Sbjct: 120 FGRSLQLRQVSAGGCNACEADTNVLNTPFFDLSRFGIDFVASPRHADGIHVTGPITRNMR 179
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
+AL Y +P P+ VI+ G CA GG +H S ++ + ++PVD+Y+PGCPP +
Sbjct: 180 TALLDTYAAVPAPKVVIASGCCAISGGPFHGSREILGDLNALIPVDLYIPGCPPHPLTTL 239
Query: 168 YGILLLQKK 176
+ +L KK
Sbjct: 240 HALLAFFKK 248
>gi|188996637|ref|YP_001930888.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurihydrogenibium
sp. YO3AOP1]
gi|188931704|gb|ACD66334.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurihydrogenibium
sp. YO3AOP1]
Length = 173
Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 44/116 (37%), Positives = 70/116 (60%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E+ S P YD+ERFG ASP+ +D +++ G LT M A+ + Y+ +P P
Sbjct: 53 SCNACEYEISALSNPYYDIERFGVKFVASPKHADAIMITGCLTRNMYEAVMKAYENVPNP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
+++I++G CA GG + SY+V+ G +P+DI++ GCPP +I G+L+L K
Sbjct: 113 KFIIAVGDCALDGGTFKGSYAVMDGIKDKLPIDIWIKGCPPEPIDIISGLLILLNK 168
>gi|186470860|ref|YP_001862178.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia
phymatum STM815]
gi|184197169|gb|ACC75132.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia
phymatum STM815]
Length = 176
Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 43/115 (37%), Positives = 66/115 (57%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P Y++E G ASPR +D+++V G LT M A+RRV+ P P
Sbjct: 54 SCNGCELEIHALNNPYYNIEGLGIRFVASPRHADMLLVTGPLTLNMKEAVRRVWQATPHP 113
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ V++ G CA GG + SY+V ++PVD+ +PGCPP+ L+ GIL +
Sbjct: 114 KLVVAAGDCACTGGIFRDSYAVCGPPSNLLPVDVAIPGCPPSPFDLLTGILTALR 168
>gi|229014468|ref|ZP_04171586.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus mycoides DSM 2048]
gi|228746818|gb|EEL96703.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus mycoides DSM 2048]
Length = 95
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 55/88 (62%), Positives = 69/88 (78%)
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y
Sbjct: 1 MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNV 183
+PGCPP ALIYGI L++KIR
Sbjct: 61 IPGCPPNPAALIYGINKLKEKIRYEART 88
>gi|91786823|ref|YP_547775.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Polaromonas sp.
JS666]
gi|91696048|gb|ABE42877.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Polaromonas sp.
JS666]
Length = 181
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P Y++E G ASPR +D+++V G ++ M ALRR YD PEP
Sbjct: 53 SCNGCELEIHALNNPYYNIEGLGIKFVASPRHADMLLVTGPVSRHMDEALRRTYDATPEP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+ V+++G C GG + SY+ ++PVD+ VPGCPP ++ GIL ++ RR
Sbjct: 113 KLVVAVGDCGCTGGIFGDSYASCGRVANVIPVDVTVPGCPPPPIEILRGILTAVRQ-RRP 171
Query: 181 GN 182
G
Sbjct: 172 GT 173
>gi|91779764|ref|YP_554972.1| putative hydrogenase/oxidoreductase subunit [Burkholderia
xenovorans LB400]
gi|91692424|gb|ABE35622.1| putative hydrogenase/oxidoreductase subunit [Burkholderia
xenovorans LB400]
Length = 177
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 64/115 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ S P Y++E G ASPR +D+++V G LT M A+ + Y+ P P
Sbjct: 53 SCNGCELEINALSNPYYNIEGLGIRFVASPRHADMLLVTGPLTLNMREAVWQAYEATPHP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ V++ G CA GG + SY+V ++PVD+ +PGCPP ++ GIL +
Sbjct: 113 KLVVATGECACTGGVFRDSYAVCGPLSTLLPVDVTIPGCPPPPIDILRGILTALR 167
>gi|296161106|ref|ZP_06843916.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
Ch1-1]
gi|295888629|gb|EFG68437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
Ch1-1]
Length = 176
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 41/115 (35%), Positives = 64/115 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ S P Y++E G ASPR +D+++V G LT M A+ + Y+ P P
Sbjct: 53 SCNGCELEINALSNPYYNIEGLGIRIVASPRHADMLLVTGPLTLNMREAVWQAYEATPHP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ V++ G CA GG + SY+V ++PVD+ +PGCPP ++ GIL +
Sbjct: 113 KLVVAAGECACTGGMFRDSYAVCGPLSTLLPVDVTIPGCPPPPIDILRGILTALR 167
>gi|228903773|ref|ZP_04067890.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis IBL 4222]
gi|228924034|ref|ZP_04087310.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228942446|ref|ZP_04104983.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228975378|ref|ZP_04135934.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|229147840|ref|ZP_04276181.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-ST24]
gi|229199422|ref|ZP_04326086.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus m1293]
gi|228584050|gb|EEK42204.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus m1293]
gi|228635490|gb|EEK91979.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus cereus BDRD-ST24]
gi|228784360|gb|EEM32383.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228817188|gb|EEM63276.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228835524|gb|EEM80889.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228855862|gb|EEN00405.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus thuringiensis IBL 4222]
Length = 95
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 55/88 (62%), Positives = 69/88 (78%)
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y
Sbjct: 1 MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNV 183
+PGCPP ALIYGI L++KIR
Sbjct: 61 IPGCPPNPAALIYGINKLKEKIRYEAKT 88
>gi|206895842|ref|YP_002247251.1| hydrogenase-4 component I [Coprothermobacter proteolyticus DSM
5265]
gi|206738459|gb|ACI17537.1| hydrogenase-4 component I [Coprothermobacter proteolyticus DSM
5265]
Length = 157
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/136 (35%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 54 SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
SL C +E++ A P+YD ERFG SPR +D+++ G +T ++
Sbjct: 9 SLWIYHLNTGSCNGCDIEILAALTPKYDAERFGVKLVGSPRHADIIVATGPVTAVAKESV 68
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
RV DQ+PEP+ ++ +G C GG + YS+ D +VPVD+YV GCPP E ++ GI
Sbjct: 69 LRVIDQVPEPKAIVVVGVCGITGGVFRGGYSIAGPLDTLVPVDVYVFGCPPKPEGIMVGI 128
Query: 171 LLLQK--KIRRVGNVK 184
L + +++R G +
Sbjct: 129 LKAAEVLELKRKGVYQ 144
>gi|228994019|ref|ZP_04153920.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus pseudomycoides DSM 12442]
gi|229000087|ref|ZP_04159657.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus mycoides Rock3-17]
gi|228759624|gb|EEM08600.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus mycoides Rock3-17]
gi|228765667|gb|EEM14320.1| Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensors
[Bacillus pseudomycoides DSM 12442]
Length = 95
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 55/88 (62%), Positives = 69/88 (78%)
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIY 155
MIV+GT+T KMA +RR+YDQMPEP++VI+MGSCA GG Y SY+VV+G D+IVPVD+Y
Sbjct: 1 MIVSGTVTKKMAPIVRRLYDQMPEPKWVIAMGSCATAGGPYVNSYAVVKGVDQIVPVDVY 60
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVGNV 183
+PGCPP ALIYGI L++KIR
Sbjct: 61 IPGCPPNPAALIYGINKLKEKIRYEAKT 88
>gi|256830388|ref|YP_003159116.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium
baculatum DSM 4028]
gi|256579564|gb|ACU90700.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium
baculatum DSM 4028]
Length = 263
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRA 88
+ E+ L + L+ R+ L ++ G C ++ +DL RFG A
Sbjct: 112 AEELRLAAALDKKMKSLL--GRSLRLRQVSAGGCGACEADINVLGTIGWDLGRFGIQYVA 169
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
SPR +D +++ G +T M AL++ + +PEPR I++G+CA GG + G D
Sbjct: 170 SPRHADGVLITGPVTKGMELALQKTWAAVPEPRIAIALGACAISGGPFIGHPQHNGGADP 229
Query: 149 IVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
I+P+D+Y+PGCPP ++ G L L ++ +
Sbjct: 230 IIPIDLYIPGCPPHPLTILDGFLRLLGRLPK 260
>gi|294338744|emb|CAZ87076.1| putative NADH ubiquinone oxidoreductase domain, 20 kDa subunit
[Thiomonas sp. 3As]
Length = 172
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 47/116 (40%), Positives = 69/116 (59%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ S P Y++E G ASPR +D+++V G ++ M ALRR YD MPEP
Sbjct: 55 SCNGCELEINALSNPYYNIEGLGVHFVASPRHADLLLVTGPVSRHMELALRRTYDAMPEP 114
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
R V++ G CA G G + Y+V ++PVD+ VPGCPP+ AL+ GI+ ++
Sbjct: 115 RLVVAAGDCAAGCGVHSQGYAVCGRVAEVLPVDVTVPGCPPSPVALLQGIMQAVQR 170
>gi|167572898|ref|ZP_02365772.1| putative hydrogenase subunit [Burkholderia oklahomensis C6786]
Length = 174
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 65/122 (53%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P
Sbjct: 53 SCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+ V++ G CA GG + SY+V ++ VPVD+ +PGCPP L+ GI + R
Sbjct: 113 KLVVAAGDCACTGGVFADSYAVCGPLEKRVPVDLTIPGCPPRPIDLLRGIRGALEHTRAG 172
Query: 181 GN 182
G
Sbjct: 173 GR 174
>gi|296134788|ref|YP_003642030.1| hypothetical protein Tint_0288 [Thiomonas intermedia K12]
gi|295794910|gb|ADG29700.1| hypothetical protein Tint_0288 [Thiomonas intermedia K12]
Length = 172
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/116 (41%), Positives = 69/116 (59%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ S P Y++E G ASPR +D+++V G ++ M ALRR YD MPEP
Sbjct: 55 SCNGCELEINALSNPYYNIEGLGVHFVASPRHADLLLVTGPVSRHMELALRRTYDAMPEP 114
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
R V++ G CA G G + Y+V ++PVD+ VPGCPP+ AL+ GIL ++
Sbjct: 115 RLVVAAGDCAAGCGVHSQGYAVCGRVAEVLPVDVTVPGCPPSPVALLQGILQAVQR 170
>gi|73749343|ref|YP_308582.1| hydrogenase, group 4, HycG subunit [Dehalococcoides sp. CBDB1]
gi|147669953|ref|YP_001214771.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dehalococcoides sp.
BAV1]
gi|73661059|emb|CAI83666.1| hydrogenase, group 4, HycG subunit [Dehalococcoides sp. CBDB1]
gi|146270901|gb|ABQ17893.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dehalococcoides sp.
BAV1]
Length = 171
Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 55/162 (33%), Positives = 89/162 (54%), Gaps = 2/162 (1%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCA-VEMMQASMPRYD 78
K+ +E GF + S + + R+ ++ + G A +E+ S P YD
Sbjct: 11 PKICKQMPLGDAEFDKLGFALKSEINTI-FGRSLAIRALDSGSDNAAEIELNNLSNPYYD 69
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
+ERFG + ASPR +D++IV G +T MA A+R+ +D MP P+ VI++G A GG
Sbjct: 70 VERFGISFVASPRHADILIVTGAVTQNMAIAVRKTFDAMPSPKLVIALGDDACSGGIASG 129
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
Y V+ G D+I+PV++ +PG PP +I +L L + +R+
Sbjct: 130 GYGVLGGVDKILPVNLKIPGNPPEPAQIINSLLGLMQSLRKK 171
>gi|167819736|ref|ZP_02451416.1| putative hydrogenase subunit [Burkholderia pseudomallei 91]
Length = 172
Score = 138 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 64/116 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P
Sbjct: 53 SCNGCELELHALGNPYYNIESLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
+ V++ G CA GG + SY+V + +VPVD+ +PGCPP L+ GI ++
Sbjct: 113 KLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLRGIRGALER 168
>gi|261402604|ref|YP_003246828.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
vulcanius M7]
gi|261369597|gb|ACX72346.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
vulcanius M7]
Length = 152
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 81/144 (56%), Gaps = 11/144 (7%)
Query: 51 RTGSLMW-MTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R S+ + C C +E++ PRYD+E++G +PR++DV+++ G +T + A
Sbjct: 7 RKRSIHVCVVNTGGCNGCDIEIVSCLSPRYDIEQYGIYVHNNPREADVLLITGPVTLQWA 66
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
L+ +Y++ PEP+ V+++G+CA GG + V+ G +++PVD +PGCPP +I
Sbjct: 67 ERLKEIYEKTPEPKVVVAVGACALSGGIFKEG-HVIGGVHKVIPVDAKIPGCPPRPSEII 125
Query: 168 YGILL-------LQKKIRRVGNVK 184
IL +++K+ + K
Sbjct: 126 ETILKVAPKAIAMREKLIKEKMEK 149
>gi|118103240|ref|XP_001234054.1| PREDICTED: hypothetical protein [Gallus gallus]
Length = 187
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 62/152 (40%), Positives = 73/152 (48%), Gaps = 46/152 (30%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQ 92
+ ++VT +D L+ WAR SL C +
Sbjct: 77 TSRGEYIVTKLDDLINWARRTSLWPSMLAQQNCHLH------------------------ 112
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
AL + PE CANGGGYYHYSYSVVRGCDRIVPV
Sbjct: 113 ---------------PALLGLSAAEPE-------DGCANGGGYYHYSYSVVRGCDRIVPV 150
Query: 153 DIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
DIYVPGCPPTAEAL+YGIL LQKKI+R ++
Sbjct: 151 DIYVPGCPPTAEALLYGILQLQKKIKRERKLQ 182
>gi|218884266|ref|YP_002428648.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus
kamchatkensis 1221n]
gi|218765882|gb|ACL11281.1| NADH-quinone oxidoreductase, B subunit [Desulfurococcus
kamchatkensis 1221n]
Length = 337
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 73/133 (54%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
++++ WA SL + + AC AVE M D ER+G+ P SPRQSD+ I G L
Sbjct: 2 LERIARWAYARSLWMIHYCSACGAVEFPPLVMAPLDWERYGYMPTPSPRQSDLYIGMGYL 61
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T K + +Y QMPEP+ V++ +C + GG Y SY+ + D + V+ +VPGC P
Sbjct: 62 TKKTVKLVLNMYRQMPEPKLVLAGCNCTSTGGPYWDSYATYKRLDDFIEVEGWVPGCMPM 121
Query: 163 AEALIYGILLLQK 175
+ + I ++K
Sbjct: 122 PDDYLSMIEYVRK 134
>gi|86160078|ref|YP_466863.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85776589|gb|ABC83426.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 256
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 74/133 (55%), Gaps = 4/133 (3%)
Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
R+ L ++ G + C E+ + ++D+ RFG ASPR +D ++V G +T M
Sbjct: 124 GRSLKLRQVSAGGCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVVTGPVTENMRL 183
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI---VPVDIYVPGCPPTAEA 165
ALR+ ++ +P PR VI++G+CA GG + S G +PVD+YVPGCPP
Sbjct: 184 ALRQTWEAVPAPRIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPIT 243
Query: 166 LIYGILLLQKKIR 178
+ GIL L +++
Sbjct: 244 FLDGILRLLGRLK 256
>gi|53722170|ref|YP_111155.1| hydrogenase/oxidoreductase subunit [Burkholderia pseudomallei
K96243]
gi|126443278|ref|YP_001062608.1| putative hydrogenase subunit [Burkholderia pseudomallei 668]
gi|126457616|ref|YP_001075561.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106a]
gi|134283533|ref|ZP_01770233.1| putative hydrogenase subunit [Burkholderia pseudomallei 305]
gi|167723605|ref|ZP_02406841.1| putative hydrogenase subunit [Burkholderia pseudomallei DM98]
gi|167849586|ref|ZP_02475094.1| putative hydrogenase subunit [Burkholderia pseudomallei B7210]
gi|167906546|ref|ZP_02493751.1| putative hydrogenase subunit [Burkholderia pseudomallei NCTC 13177]
gi|167922746|ref|ZP_02509837.1| putative hydrogenase subunit [Burkholderia pseudomallei BCC215]
gi|217418381|ref|ZP_03449888.1| putative hydrogenase subunit [Burkholderia pseudomallei 576]
gi|226200219|ref|ZP_03795764.1| putative hydrogenase subunit [Burkholderia pseudomallei Pakistan 9]
gi|237510550|ref|ZP_04523265.1| formate hydrogenlyase subunit 7 [Burkholderia pseudomallei MSHR346]
gi|242311023|ref|ZP_04810040.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106b]
gi|254190228|ref|ZP_04896737.1| putative hydrogenase subunit [Burkholderia pseudomallei Pasteur
52237]
gi|254193464|ref|ZP_04899898.1| putative hydrogenase subunit [Burkholderia pseudomallei S13]
gi|254262469|ref|ZP_04953334.1| putative hydrogenase subunit [Burkholderia pseudomallei 1710a]
gi|52212584|emb|CAH38610.1| putative hydrogenase/oxidoreductase subunit [Burkholderia
pseudomallei K96243]
gi|126222769|gb|ABN86274.1| putative hydrogenase subunit [Burkholderia pseudomallei 668]
gi|126231384|gb|ABN94797.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106a]
gi|134245282|gb|EBA45376.1| putative hydrogenase subunit [Burkholderia pseudomallei 305]
gi|157937905|gb|EDO93575.1| putative hydrogenase subunit [Burkholderia pseudomallei Pasteur
52237]
gi|169650217|gb|EDS82910.1| putative hydrogenase subunit [Burkholderia pseudomallei S13]
gi|217397685|gb|EEC37700.1| putative hydrogenase subunit [Burkholderia pseudomallei 576]
gi|225927727|gb|EEH23769.1| putative hydrogenase subunit [Burkholderia pseudomallei Pakistan 9]
gi|235002755|gb|EEP52179.1| formate hydrogenlyase subunit 7 [Burkholderia pseudomallei MSHR346]
gi|242134262|gb|EES20665.1| putative hydrogenase subunit [Burkholderia pseudomallei 1106b]
gi|254213471|gb|EET02856.1| putative hydrogenase subunit [Burkholderia pseudomallei 1710a]
Length = 172
Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 64/116 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P
Sbjct: 53 SCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
+ V++ G CA GG + SY+V + +VPVD+ +PGCPP L+ GI ++
Sbjct: 113 KLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLRGIRGALER 168
>gi|222054796|ref|YP_002537158.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp.
FRC-32]
gi|221564085|gb|ACM20057.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp.
FRC-32]
Length = 256
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 61/106 (57%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C ++ S +DL RFG ASPR +D ++V G +T M AL + Y+ +P P
Sbjct: 136 GCNACEADVNVLSTVAWDLGRFGIQFVASPRHADGILVTGPVTENMREALLKTYEAVPAP 195
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
+ VI+ G+CA GG + S V G D ++PVD+Y+PGCPP +
Sbjct: 196 KIVIASGACAINGGPFMDSPEVHNGVDGLLPVDLYIPGCPPHPFTI 241
>gi|303325434|ref|ZP_07355877.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3]
gi|302863350|gb|EFL86281.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3]
Length = 271
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + YDL RFG ASPR +D ++V G +T M AL + MPEP
Sbjct: 152 GCNACEADCNVLGTLVYDLGRFGIEFTASPRHADGLVVTGPVTENMRRALLDTWAAMPEP 211
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCD---RIVPVDIYVPGCPPTAEALIYGILLLQKK 176
R ++++G+CA GG + S G D R+ PVD++VPGCPP +++ G+L L+++
Sbjct: 212 RLLVAVGACAISGGLFRESPQCHGGLDGGGRLPPVDVFVPGCPPNPWSILDGLLSLRRR 270
>gi|154244129|ref|YP_001415087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Xanthobacter
autotrophicus Py2]
gi|154158214|gb|ABS65430.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Xanthobacter
autotrophicus Py2]
Length = 170
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 47/115 (40%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Query: 50 ARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
R+ S+ + C +E+ YDLERFG ASPR +DV++V G + MA
Sbjct: 40 GRSLSIREVDAGSCNGCELEIHALGNAFYDLERFGLHVVASPRHADVLLVTGPVAKNMAE 99
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
AL+R YD P P++V++ G CA GG + S + G + IVPVD+ +PGCPPT
Sbjct: 100 ALKRTYDATPSPKWVVAAGDCAINGGIFAGSSACAGGVEAIVPVDLRIPGCPPTP 154
>gi|167742571|ref|ZP_02415345.1| putative hydrogenase subunit [Burkholderia pseudomallei 14]
gi|167914902|ref|ZP_02501993.1| putative hydrogenase subunit [Burkholderia pseudomallei 112]
gi|254300487|ref|ZP_04967933.1| putative hydrogenase subunit [Burkholderia pseudomallei 406e]
gi|157810342|gb|EDO87512.1| putative hydrogenase subunit [Burkholderia pseudomallei 406e]
Length = 172
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 42/116 (36%), Positives = 64/116 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P
Sbjct: 53 SCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
+ V++ G CA GG + SY+V + +VPVD+ +PGCPP L+ GI ++
Sbjct: 113 KLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLRGIRGALER 168
>gi|148262959|ref|YP_001229665.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
uraniireducens Rf4]
gi|146396459|gb|ABQ25092.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
uraniireducens Rf4]
Length = 263
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 1/121 (0%)
Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ R+ L ++ G C ++ S +DL RFG ASPR +D + V G +T M
Sbjct: 131 FGRSLKLREVSAGGCNACEADVNVLSTVGFDLGRFGIQFVASPRHADGIFVTGPVTENMR 190
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
AL + Y+ +PEP+ VI+ G+CA GG + S G + ++PVD+Y+PGCPP ++
Sbjct: 191 EALLKTYEAVPEPKIVIASGACAINGGPFIDSSEAHNGVEGLLPVDLYIPGCPPHPITIL 250
Query: 168 Y 168
Sbjct: 251 D 251
>gi|83717494|ref|YP_439462.1| formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264]
gi|167577905|ref|ZP_02370779.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis TXDOH]
gi|167616030|ref|ZP_02384665.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis Bt4]
gi|257142585|ref|ZP_05590847.1| formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264]
gi|83651319|gb|ABC35383.1| Formate hydrogenlyase subunit 7 [Burkholderia thailandensis E264]
Length = 174
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 65/118 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P
Sbjct: 53 SCNGCELELNALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
+ V++ G CA GG + SY+V + +VPVD+ + GCPP L+ GI +++R
Sbjct: 113 KLVVAAGDCACTGGVFAGSYAVCGPVETLVPVDVAIAGCPPRPIDLLRGIRGALERVR 170
>gi|221198810|ref|ZP_03571855.1| hydrogenase-4 component I [Burkholderia multivorans CGD2M]
gi|221205071|ref|ZP_03578087.1| hydrogenase-4 component I [Burkholderia multivorans CGD2]
gi|221174862|gb|EEE07293.1| hydrogenase-4 component I [Burkholderia multivorans CGD2]
gi|221181261|gb|EEE13663.1| hydrogenase-4 component I [Burkholderia multivorans CGD2M]
Length = 171
Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats.
Identities = 41/112 (36%), Positives = 63/112 (56%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P Y++E G ASPR +D+++V G +T M +A+ YD P P
Sbjct: 53 SCNGCELEIHALNNPYYNIEGLGIKFVASPRHADLLLVTGPVTLNMKAAVLAAYDATPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
+ V++ G CA GG + SY+V ++PVD+ +PGCPP L+ GIL
Sbjct: 113 KLVVAAGECACTGGIFADSYAVCGPVSSVLPVDVTIPGCPPPPIDLLRGILT 164
>gi|291615014|ref|YP_003525171.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans
lithotrophicus ES-1]
gi|291585126|gb|ADE12784.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans
lithotrophicus ES-1]
Length = 171
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 64/112 (57%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + Y++E G ASPR +D+++V G ++ M AL+R YD P+P
Sbjct: 53 SCNGCELEIHAVNNAYYNIEGMGIKFVASPRHADLLLVTGPVSRHMEIALKRTYDATPDP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
+ V+++G CA GG + SY+ ++PVD+ V GCPP A++ GIL
Sbjct: 113 KLVVAIGDCACDGGIFGESYASCGKVSNVIPVDVVVSGCPPAPTAILQGILT 164
>gi|209515026|ref|ZP_03263895.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
H160]
gi|209504652|gb|EEA04639.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
H160]
Length = 169
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 43/111 (38%), Positives = 63/111 (56%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P Y++E G ASPR +D+++V G +T M +AL YD P P
Sbjct: 53 SCNGCELEIHALNNPYYNIEGLGIKFVASPRHADLLLVTGPVTLNMRAALLAAYDATPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
+ V++ G CA GG + SY+V I+PVD+ +PGCPP L+ GIL
Sbjct: 113 KLVVAAGECACTGGIFADSYAVCGPVSSILPVDVMIPGCPPPPVDLLRGIL 163
>gi|220918887|ref|YP_002494191.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219956741|gb|ACL67125.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 259
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 4/133 (3%)
Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
R+ L ++ G + C E+ + ++D+ RFG ASPR +D +++ G +T M
Sbjct: 127 GRSLKLRQVSAGGCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVITGPVTENMRL 186
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI---VPVDIYVPGCPPTAEA 165
ALR+ ++ +P PR VI++G+CA GG + S G +PVD+YVPGCPP
Sbjct: 187 ALRQTWEAVPAPRIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPIT 246
Query: 166 LIYGILLLQKKIR 178
+ GIL L +++
Sbjct: 247 FLDGILRLLGRLK 259
>gi|113868177|ref|YP_726666.1| formate hydrogenlyase subunit 7 [Ralstonia eutropha H16]
gi|113526953|emb|CAJ93298.1| formate hydrogenlyase subunit 7 [Ralstonia eutropha H16]
Length = 174
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 42/124 (33%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P Y++E G ASPR +D+++V G ++ M AL R Y PEP
Sbjct: 53 SCNGCELEIHALGNPYYNIEGLGIKFVASPRHADMLLVTGPVSRHMEEALLRTYAATPEP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+ V+++G C GG + SY+ ++PVDI VPGCPP ++ IL +R+
Sbjct: 113 KLVVAIGDCGCTGGIFGESYASCGRVANVIPVDITVPGCPPPPIEILRAILSA---VRQT 169
Query: 181 GNVK 184
G +
Sbjct: 170 GATR 173
>gi|317126126|ref|YP_004100238.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Intrasporangium
calvum DSM 43043]
gi|315590214|gb|ADU49511.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Intrasporangium
calvum DSM 43043]
Length = 157
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 65/112 (58%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E++ A P YDLER+G ASPR +DV++V G +T MA LR+ Y+ MP P
Sbjct: 42 SCNGCELEIVSAFGPVYDLERYGVRLVASPRHADVLLVTGPVTRNMADPLRKAYEAMPAP 101
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
+ V+++G CA G + +Y V ++PVD + GCPP+ E +I +
Sbjct: 102 KLVVALGDCARNCGIFAGAYGVFGAVSDVIPVDREISGCPPSPEEIIAALRE 153
>gi|295699055|ref|YP_003606948.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
CCGE1002]
gi|295438268|gb|ADG17437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Burkholderia sp.
CCGE1002]
Length = 169
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 63/112 (56%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P Y++E G ASPR +D+++V G +T M +AL YD P P
Sbjct: 53 SCNGCELEIHALNNPYYNIEGLGIKFVASPRHADLLLVTGPVTLNMRAALLAAYDATPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
+ V++ G CA GG + SY+V I+PVD+ +PGCPP L+ GIL
Sbjct: 113 KLVVAAGECACTGGIFANSYAVCGPVSSILPVDVTIPGCPPPPIDLLRGILT 164
>gi|258653154|ref|YP_003202310.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nakamurella
multipartita DSM 44233]
gi|258556379|gb|ACV79321.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nakamurella
multipartita DSM 44233]
Length = 162
Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats.
Identities = 45/113 (39%), Positives = 64/113 (56%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C VE+ A P YD ER+G ASPR +D ++V G +T MA LRR Y +P+P
Sbjct: 47 SCNGCEVEIGAAFGPVYDAERYGARLVASPRHADALLVTGVVTRNMAQPLRRTYQAVPDP 106
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
+ V+++G CA G + + V IVPVD+ +PGCPP E ++ G+ L
Sbjct: 107 KLVVAVGDCARTCGVFRGAPGVAGAVGDIVPVDLEIPGCPPRPEDIVAGLRKL 159
>gi|307353199|ref|YP_003894250.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
petrolearius DSM 11571]
gi|307156432|gb|ADN35812.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
petrolearius DSM 11571]
Length = 171
Score = 137 bits (345), Expect = 8e-31, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 69/113 (61%)
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
+E+ S P YD+ERFG ASPR +DV+ V G +T+ M AL++ YD P P++V+++
Sbjct: 58 IEINNLSSPYYDVERFGVTFVASPRHADVLFVTGAVTHNMRYALKKTYDATPSPKFVVAI 117
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
G A GG + SY++ +VPVD+ +PG PP +I +L L K+ ++
Sbjct: 118 GDEACNGGIFKDSYAICGPVSSVVPVDLEIPGNPPEPVDMIKSLLALMKEAKK 170
>gi|56477805|ref|YP_159394.1| subunit of putative formate hydrogenlyase-like membrane complex
[Aromatoleum aromaticum EbN1]
gi|56313848|emb|CAI08493.1| subunit of putative formate hydrogenlyase-like membrane complex
[Aromatoleum aromaticum EbN1]
Length = 187
Score = 137 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 65/115 (56%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P Y++E G ASPR +D+++V G ++ M AL+R YD +P P
Sbjct: 53 SCNGCELEIHALNNPYYNIEGLGIKFVASPRHADMLLVTGPVSRHMELALKRTYDAIPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ V+++G C GG + SY+ ++PVD+ VPGCPP ++ GIL +
Sbjct: 113 KLVVAIGDCGCTGGIFGESYASCGRISNVIPVDVTVPGCPPPPADILAGILTALR 167
>gi|94313588|ref|YP_586797.1| hydrogenase 4 subunit I [Cupriavidus metallidurans CH34]
gi|93357440|gb|ABF11528.1| Hydrogenase-4 subunit I [Cupriavidus metallidurans CH34]
Length = 171
Score = 137 bits (344), Expect = 9e-31, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 62/111 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P Y++E G ASPR +D+++V G ++ M ALRR Y+ PEP
Sbjct: 52 SCNGCELEIHALGNPYYNIEGLGVRFVASPRHADMLLVTGPVSRHMEEALRRTYEATPEP 111
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
+ V+++G C G + SY+ ++PVD+ VPGCPP ++ GIL
Sbjct: 112 KLVVAVGDCGCTSGIFGESYASCGRVSNVIPVDVSVPGCPPPPIDILRGIL 162
>gi|296134448|ref|YP_003641695.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermincola sp. JR]
gi|296033026|gb|ADG83794.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermincola potens
JR]
Length = 143
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/128 (38%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Query: 52 TGSLMWMTFG---LACCAVEMMQAS-MPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
T S C VE+ + +PRYD+ER G SP+ +D+++V G LT K+
Sbjct: 10 TRSPWLYRINAGSCNGCDVELATTALIPRYDVERLGCKYCGSPKHADIVLVTGPLTAKVK 69
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
+ RVYD++P+P+ V+++G C GG + SY+V D +PVD+ VPGCPP +A+I
Sbjct: 70 DKVLRVYDEIPDPKVVVAVGICPVSGGVFRDSYAVHGPVDSYIPVDVNVPGCPPRPQAII 129
Query: 168 YGILLLQK 175
GI+ K
Sbjct: 130 DGIVEAIK 137
>gi|323141862|ref|ZP_08076723.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
gi|322413609|gb|EFY04467.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
Length = 240
Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 52/131 (39%), Positives = 71/131 (54%), Gaps = 3/131 (2%)
Query: 53 GSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
SL C E+ S P YDL R+G A ASPR +D+++V G +T + A
Sbjct: 109 RSLHVRHLDAGSCNACDFELGAMSNPVYDLHRYGIAFVASPRHADMLMVTGVVTRNLEQA 168
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
LR YD MPEP+ V++ G+CA GG Y +Y+VV +VPVDI VPGCPP A+I
Sbjct: 169 LRMTYDAMPEPKMVMACGACACGGETYGSTYAVVGRAADVVPVDIAVPGCPPRPAAIIVA 228
Query: 170 ILLLQKKIRRV 180
+ ++
Sbjct: 229 LCAAADMLKER 239
>gi|167589517|ref|ZP_02381905.1| Putative hydrogenase/oxidoreductase subunit [Burkholderia ubonensis
Bu]
Length = 169
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 63/111 (56%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P Y++E G ASPR +D+++V G +T M +A+ YD P P
Sbjct: 53 SCNGCELEIHALNNPVYNIEGLGIKFVASPRHADLLLVTGPVTLNMRAAVLAAYDATPSP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
+ V++ G CA GG + SY+V I+PVD+ +PGCPP L+ GIL
Sbjct: 113 KLVVAAGECACTGGIFADSYAVCGPVSSILPVDVTIPGCPPPPVDLLRGIL 163
>gi|288818462|ref|YP_003432810.1| Ni-Fe hydrogenase small subunit/NADH ubiquinone oxidoreductase 20
kD subunit [Hydrogenobacter thermophilus TK-6]
gi|288787862|dbj|BAI69609.1| Ni-Fe hydrogenase small subunit/NADH ubiquinone oxidoreductase 20
kD subunit [Hydrogenobacter thermophilus TK-6]
gi|308752052|gb|ADO45535.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobacter
thermophilus TK-6]
Length = 155
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 65/113 (57%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P YD+ERFG ASP+ +DV+++ G +T M + + Y+ P P
Sbjct: 35 SCNACEIEVANLNNPYYDVERFGIKFVASPKHADVLLITGCVTRNMLIPMIKAYENAPAP 94
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
++V+++G C Y+ SY+V + +PV ++VPGCPP +I G+L L
Sbjct: 95 KFVLTVGDCTAECPYFKDSYAVEGPVSKHLPVHVHVPGCPPEPAQVIEGLLKL 147
>gi|167828121|ref|ZP_02459592.1| putative hydrogenase subunit [Burkholderia pseudomallei 9]
Length = 165
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/111 (37%), Positives = 62/111 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P
Sbjct: 53 SCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
+ V++ G CA GG + SY+V + +VPVD+ +PGCPP L+ GI
Sbjct: 113 KLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIELLRGIR 163
>gi|197124107|ref|YP_002136058.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
K]
gi|196173956|gb|ACG74929.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
K]
Length = 256
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 4/133 (3%)
Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
R+ L ++ G + C E+ + ++D+ RFG ASPR +D +++ G +T M
Sbjct: 124 GRSLKLRQVSAGGCSGCEAELNASGNIQFDVGRFGVQFVASPRHADGLVITGPVTENMRL 183
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI---VPVDIYVPGCPPTAEA 165
ALR+ ++ +P PR VI++G+CA GG + S G +PVD+YVPGCPP
Sbjct: 184 ALRQTWEAVPAPRIVIAVGACAISGGPFAGSPVTCGGAAAALDGIPVDLYVPGCPPHPIT 243
Query: 166 LIYGILLLQKKIR 178
+ GIL L +++
Sbjct: 244 FLDGILRLLGRLK 256
>gi|167565804|ref|ZP_02358720.1| putative hydrogenase subunit [Burkholderia oklahomensis EO147]
Length = 174
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 44/122 (36%), Positives = 65/122 (53%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P
Sbjct: 53 SCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
+ V++ G CA GG + SY+V ++ VPVD+ +PGCPP L+ GI + R
Sbjct: 113 KLVVAAGDCACTGGVFADSYAVCGPLEKRVPVDLTIPGCPPRPIDLLCGIRGALEHTRAG 172
Query: 181 GN 182
G
Sbjct: 173 GR 174
>gi|78043938|ref|YP_360650.1| carbon monoxide-induced hydrogenase subunit CooL [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996053|gb|ABB14952.1| carbon monoxide-induced hydrogenase, CooL subunit [Carboxydothermus
hydrogenoformans Z-2901]
Length = 143
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 71/128 (55%), Gaps = 4/128 (3%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
S C VE+ + PRYD+ER G SP+ +D++++ G LT ++
Sbjct: 10 KKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPKHADIVLITGPLTARVK 69
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
+ R+Y+++PEP+ +++G C GG + SY++ D +PVD+ VPGCPP +A+I
Sbjct: 70 EKVLRLYEEIPEPKVTVAIGVCPISGGVFRDSYAITGPIDNFIPVDVNVPGCPPRPQAII 129
Query: 168 YGILLLQK 175
GI+ K
Sbjct: 130 DGIIEAIK 137
>gi|144900610|emb|CAM77474.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Magnetospirillum
gryphiswaldense MSR-1]
Length = 176
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 54/118 (45%), Positives = 74/118 (62%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + P YDLERFG ASPR +DV++V G ++ MA ALRR + PEP
Sbjct: 58 SCNGCELEIHAVNHPVYDLERFGIKFVASPRHADVLLVTGPVSWNMAEALRRTVEATPEP 117
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
R+V++MG CA GG + SY+V G IVPVD+ +PGCPPT +I G+L L + +
Sbjct: 118 RWVVAMGDCAIDGGCFAGSYAVAGGAAAIVPVDMTIPGCPPTPINIIAGLLALLEAVD 175
>gi|254173900|ref|ZP_04880571.1| hydrogenase-4 component I [Thermococcus sp. AM4]
gi|214032149|gb|EEB72980.1| hydrogenase-4 component I [Thermococcus sp. AM4]
Length = 187
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
SL C +E++ PR D+ER G SPR +D + G +T +
Sbjct: 3 KKSLWVFHLNSGSCNGCDIEVLNMFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECLP 62
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI-----------VPVDIYVP 157
+ +P+P+ V+++G+CA GGG ++ +YSV+ G + P +++P
Sbjct: 63 KVIDALTAVPDPKVVLAIGACACGGGIWYDTYSVIGGIKELYKILKEEYNIEPPATVFIP 122
Query: 158 GCPPTAEALIYGILLLQKKIRRVGNVK 184
GCPP EA+IYG+ + + + + +
Sbjct: 123 GCPPKPEAIIYGVAVARGMLEKKQRKQ 149
>gi|225164839|ref|ZP_03727063.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae
bacterium TAV2]
gi|224800549|gb|EEG18921.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae
bacterium TAV2]
Length = 294
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Query: 6 VNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVT--WARTGSLMWMTFG-L 62
+ I+ + D + L ++D+ + + R+ L ++ G
Sbjct: 95 PDGAIVQTGDHRMATRQRDDLILAPDPSREQIRLAAALDEKLRKLFGRSLKLRQVSAGGC 154
Query: 63 ACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRY 122
C ++ +DL RFG ASPR +D +++ G ++ M AL++ +D +P+P+
Sbjct: 155 NACEADVNVLGTIGWDLSRFGIQFVASPRHADGLLITGPVSQGMELALKKTWDAVPDPKL 214
Query: 123 VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
VI+ G+CA GG + + ++ G +VPVD+Y+PGCPP +
Sbjct: 215 VIATGACAISGGPFAGNPQILGGASAVVPVDLYIPGCPPHPLTI 258
>gi|212224173|ref|YP_002307409.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermococcus
onnurineus NA1]
gi|212009130|gb|ACJ16512.1| NADH dehydrogenase (ubiquinone), 20 kDa subunit [Thermococcus
onnurineus NA1]
Length = 191
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 18/151 (11%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
SL C +E++ PR D+ER G SPR +D + G +T +
Sbjct: 3 KNSLWVFHLNSGSCNGCDIEILNIFAPRNDVERLGIKLVGSPRHADAIAFTGPITRECLP 62
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI-----------VPVDIYVP 157
+ +PEP+ V+++G+CA GGG ++ +YSV+ G + P +++P
Sbjct: 63 KVIDALKAVPEPKVVLAIGACACGGGIWYDTYSVIGGVKELYRILKEEYNMEPPATVFIP 122
Query: 158 GCPPTAEALIYGIL----LLQKKIRRVGNVK 184
GCPP EA+IYG+ +L+ K ++ V+
Sbjct: 123 GCPPKPEAIIYGVAVASGMLESKQKKTVYVE 153
>gi|254496122|ref|ZP_05109021.1| NADH dehydrogenase I, truncated B subunit [Legionella drancourtii
LLAP12]
gi|254354663|gb|EET13299.1| NADH dehydrogenase I, truncated B subunit [Legionella drancourtii
LLAP12]
Length = 80
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 65/79 (82%), Positives = 73/79 (92%)
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
MA ALR+VYDQMPEPR+V+SMGSCANGGGYYHYSYSVVRGCDRIVPVD+YVPGCPPTAEA
Sbjct: 1 MAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEA 60
Query: 166 LIYGILLLQKKIRRVGNVK 184
L+YGI+ LQ KIRR ++
Sbjct: 61 LLYGIIQLQNKIRRKNILE 79
>gi|20093902|ref|NP_613749.1| Ni,Fe-hydrogenase III small subunit [Methanopyrus kandleri AV19]
gi|19886843|gb|AAM01679.1| Ni,Fe-hydrogenase III small subunit [Methanopyrus kandleri AV19]
Length = 162
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDV 95
L +++ +L + R+ S+ C +E++ RYDLE++G +PR+SDV
Sbjct: 3 LKSALKKLKGFVRSRSIHVTVVNTGGCNGCDIEILACYTYRYDLEQYGIYYHNNPRKSDV 62
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDI 154
+IV G +T + L ++Y ++PEP+ V+++G+CA GG ++ V ++PVD
Sbjct: 63 LIVTGPVTYQWRDKLVKLYHKVPEPKAVVAVGTCACSGGIFNQRGGRVCGPVREVIPVDA 122
Query: 155 YVPGCPPTAEALIYGIL 171
VPGCPP E ++ ++
Sbjct: 123 EVPGCPPRPEEIVSAVV 139
>gi|219670289|ref|YP_002460724.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfitobacterium
hafniense DCB-2]
gi|219540549|gb|ACL22288.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfitobacterium
hafniense DCB-2]
Length = 155
Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 3/126 (2%)
Query: 52 TGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S C EM P YDL+RFG ASPR +D+++ G ++ +
Sbjct: 30 RQSWHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPMSTHLIQ 89
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
A Y+ P P+ +I++G CA GG + +Y+ G ++PVDI +PGCPP+ + L+
Sbjct: 90 AALATYEGTPNPKKIIAVGDCALDGGMFKEAYAAHNGVGEVLPVDIKIPGCPPSPDELLK 149
Query: 169 GILLLQ 174
+L L+
Sbjct: 150 VLLQLK 155
>gi|212223420|ref|YP_002306656.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
[Thermococcus onnurineus NA1]
gi|212008377|gb|ACJ15759.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
[Thermococcus onnurineus NA1]
Length = 266
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 80/153 (52%), Gaps = 26/153 (16%)
Query: 54 SLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
S+ C +E++ P YD ER G SPR +D ++V+G LT + A+
Sbjct: 6 SVWVFHVDSGSCNGCDIEILDVLTPYYDAERLGIKLVPSPRHADALLVSGPLTRQTYYAV 65
Query: 111 RRVYDQM-PEPRYVISMGSCANGGGYYHYSY-----SVVRGCDRI----VPV-------- 152
+ Y+ M P+PR V+++G+CA+ GG ++ Y + RG DR+ + V
Sbjct: 66 KAAYEAMPPKPRIVVAIGTCASSGGIFYNGYPIYNPNPERGSDRLRTGGIEVLLAEYGKK 125
Query: 153 -DIYVPGCPPTAEALIYGILLL----QKKIRRV 180
D+Y+PGCPP+ E ++YG+ L +KK++
Sbjct: 126 PDMYIPGCPPSPEEILYGLAQLLGLKEKKMKGE 158
>gi|121534188|ref|ZP_01666013.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermosinus
carboxydivorans Nor1]
gi|121307291|gb|EAX48208.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermosinus
carboxydivorans Nor1]
Length = 143
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 71/128 (55%), Gaps = 4/128 (3%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
S C VE+ + PRYD+ER G SP+ +D++++ G LT ++
Sbjct: 10 KKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPKHADIVLITGPLTVRVK 69
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
+ R+Y+++P+P+ +++G C GG + SY++ D +PVD+ VPGCPP +A+I
Sbjct: 70 EKVLRLYEEIPDPKVTVAIGVCPISGGVFRDSYAIAGPIDNFIPVDVNVPGCPPRPQAII 129
Query: 168 YGILLLQK 175
GI+ K
Sbjct: 130 DGIIEAIK 137
>gi|51244894|ref|YP_064778.1| hydrogenase, component I-formate hydrogenlyase subunit 7
[Desulfotalea psychrophila LSv54]
gi|50875931|emb|CAG35771.1| related to hydrogenase, component I-formate hydrogenlyase subunit 7
[Desulfotalea psychrophila LSv54]
Length = 248
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ R+ L ++ G C + + P +DL RFG ASPR +D + V G +++ M
Sbjct: 121 FGRSLQLRQVSAGGCNSCEADTNVLNTPFFDLSRFGIDFVASPRHADGLHVTGPISHNMR 180
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
AL Y+ + P+ VI+ G C+ GG ++ S VV + ++PVD+Y+PGCPP +
Sbjct: 181 QALITTYEAVASPKVVIASGCCSISGGPFYGSSEVVGDLNSLLPVDLYIPGCPPHPLTTL 240
Query: 168 YGIL 171
+ +L
Sbjct: 241 HALL 244
>gi|148259621|ref|YP_001233748.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
cryptum JF-5]
gi|326402829|ref|YP_004282910.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
AIU301]
gi|146401302|gb|ABQ29829.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
cryptum JF-5]
gi|325049690|dbj|BAJ80028.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
AIU301]
Length = 264
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
SL C E+ + P Y+L R G SPR +D+++V G +T M
Sbjct: 125 RRSLHVRHVDAGSCNGCESELQALNNPFYNLHRLGIFFTPSPRFADLLLVTGPVTRAMLE 184
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
LRR ++ MP PR+V++ G+CA GG + G + +PVD+Y+PGCPP A+I
Sbjct: 185 PLRRTWEAMPAPRWVMASGTCAVSGGIAPGGP-CLSGLEEALPVDLYLPGCPPNPAAIIE 243
Query: 169 GILLLQKKIRRVGNVK 184
+L+ RR V+
Sbjct: 244 ALLMFLG--RRAQRVR 257
>gi|297567576|ref|YP_003686547.1| hypothetical protein Mesil_3218 [Meiothermus silvanus DSM 9946]
gi|297567775|ref|YP_003686746.1| hypothetical protein Mesil_3429 [Meiothermus silvanus DSM 9946]
gi|296852025|gb|ADH65039.1| hypothetical protein Mesil_3218 [Meiothermus silvanus DSM 9946]
gi|296852224|gb|ADH65238.1| hypothetical protein Mesil_3429 [Meiothermus silvanus DSM 9946]
Length = 290
Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 70/107 (65%)
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
E+ A P +D+ RFGF+ ASPR +D ++V G ++ M AL R Y PEP+ V+++
Sbjct: 143 TEVALAGNPFHDMSRFGFSVVASPRHADALLVTGPVSQNMREALWRTYQATPEPKGVVAV 202
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
G+ A GG + S +VV G D++VPVD+YVPG P ++++G+LLL
Sbjct: 203 GNEAIGGEIFAESAAVVGGVDQVVPVDVYVPGSPARPASILHGLLLL 249
>gi|154150665|ref|YP_001404283.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
Methanoregula boonei 6A8]
gi|153999217|gb|ABS55640.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoregula
boonei 6A8]
Length = 172
Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 1/129 (0%)
Query: 48 TWARTGSLMWMTFGLACCA-VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
+ R+ ++ + G A +E+ S YD+ERFG + ASPR +DV++V G +T M
Sbjct: 38 RFGRSLAIRELDAGSDNAAEIEINNLSNAYYDVERFGISFVASPRHADVLLVTGAITCNM 97
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
A A ++ YD MP P++V+++G A GG Y +Y+V+ G D I PVD+ +PG PP +
Sbjct: 98 AIAAQKTYDAMPSPKFVVAVGDDACDGGIYKGTYAVLGGADAIFPVDLKIPGNPPAPIQI 157
Query: 167 IYGILLLQK 175
+ G+L L +
Sbjct: 158 LTGLLALMR 166
>gi|198283919|ref|YP_002220240.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218667213|ref|YP_002426553.1| hydrogenase-4, I subunit [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198248440|gb|ACH84033.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218519426|gb|ACK80012.1| hydrogenase-4, I subunit [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 165
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 47/112 (41%), Positives = 69/112 (61%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P Y LE+ GF ASPR +DV+ V G +T M +AL+ ++ PEP
Sbjct: 46 SCNGCELELNALGGPHYGLEQAGFHFTASPRHADVLTVTGPVTRHMVAALQDCHNATPEP 105
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
R VI++G CA GGG + SY+V+ ++PVD+ +PGCPP +AL+ G+L
Sbjct: 106 RRVIAVGDCACGGGAFRGSYAVMGSAAEVLPVDLQIPGCPPDPDALLRGLLQ 157
>gi|45359024|ref|NP_988581.1| energy conserving hydrogenase A small subunit [Methanococcus
maripaludis S2]
gi|45047899|emb|CAF31017.1| energy conserving hydrogenase A small subunit [Methanococcus
maripaludis S2]
Length = 156
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 16/152 (10%)
Query: 46 LVTWARTGSL-MWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ + R S+ + + C C +E++ PRYD+E++G +PR++DV++V G +
Sbjct: 2 IKDFVRKRSINVCLVNTGGCNGCDIEIVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPV 61
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T L +Y++ PEP+ VI++G+CA GG + + D+++PVD +PGCPP
Sbjct: 62 TGAWEKRLLEIYEKTPEPKIVIAVGACALSGGIFKEG-HIHGPVDKVIPVDAKLPGCPPR 120
Query: 163 AEALIYGIL------------LLQKKIRRVGN 182
+I ++ LL +K++ N
Sbjct: 121 PSEIISAVVSIAPDALAAKEKLLNQKLKEEKN 152
>gi|150399523|ref|YP_001323290.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
vannielii SB]
gi|150012226|gb|ABR54678.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
vannielii SB]
Length = 159
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 46 LVTWARTGSL-MWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ + R S+ + + C C +E++ PRYD+E++G +PR++DV++V G +
Sbjct: 5 IKDFVRKRSINVCIVNTGGCNGCDIEIVSTLAPRYDIEQYGIYVHNNPREADVLVVTGPV 64
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T L +Y++ PEP+ V+S+G+CA GG + + D+I+PVD +PGCPP
Sbjct: 65 TGAWEKRLLELYEKTPEPKIVVSIGACALSGGIFKEG-HIFGPVDKIIPVDAKLPGCPPR 123
Query: 163 AEALIYGI-------LLLQKKIRRVG 181
+I I L ++KI
Sbjct: 124 PSEIISAIVSIAPEALAAKEKIMNQK 149
>gi|57233683|ref|YP_182267.1| hydrogenase, group 4, HycG subunit, putative [Dehalococcoides
ethenogenes 195]
gi|57224131|gb|AAW39188.1| hydrogenase, group 4, HycG subunit, putative [Dehalococcoides
ethenogenes 195]
Length = 171
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 58/179 (32%), Positives = 95/179 (53%), Gaps = 9/179 (5%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ V I + + K DADF ++ GF + + V + R+ ++ + G
Sbjct: 1 MKNVLNNIFKPKVCRQMPKGDADFDKL-------GFALKTEIHAV-FGRSLAIRALDSGS 52
Query: 63 ACCA-VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
A +E+ S P YD+ERFG + ASPR +D++IV G ++ MA A+R+ +D MP P+
Sbjct: 53 DNSAEIELNNLSNPYYDIERFGLSFVASPRHADILIVTGAVSQNMAIAVRKTFDAMPSPK 112
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VI++G A G Y V+ G D+I+PVD+ +PG PP +I +L L + + +
Sbjct: 113 LVIALGDDACGSSIVCGGYGVLGGVDKILPVDLKIPGNPPEPIQIITALLGLMRSLGKK 171
>gi|83592758|ref|YP_426510.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodospirillum
rubrum ATCC 11170]
gi|1515468|gb|AAC45118.1| CooL [Rhodospirillum rubrum]
gi|83575672|gb|ABC22223.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodospirillum
rubrum ATCC 11170]
Length = 142
Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats.
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
S C VE+ + PRYD+ER G SP+ +D+++V G LT ++
Sbjct: 9 KKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCQYCGSPKHADIVLVTGPLTARVK 68
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
+ RVY+++P+P+ +++G C GG + SYS+V DR +PVD+ VPGCPP +A+I
Sbjct: 69 DKVLRVYEEIPDPKVTVAIGVCPISGGVFRESYSIVGPIDRYLPVDVNVPGCPPRPQAII 128
Query: 168 YGILLLQK 175
GI +
Sbjct: 129 EGIAKAIE 136
>gi|303247448|ref|ZP_07333720.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
fructosovorans JJ]
gi|302491144|gb|EFL51036.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
fructosovorans JJ]
Length = 253
Score = 133 bits (336), Expect = 8e-30, Method: Composition-based stats.
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 1/127 (0%)
Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+AR+ L ++ G C ++ YDL RFG ASPR +D + V G +T M
Sbjct: 122 FARSLKLRQVSAGGCNACEADINVLGTVVYDLGRFGIDFVASPRHADGVAVTGPVTENMY 181
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
A R +D +P+PR I++G+CA GG + S G ++PVD+YVPGCPP ++
Sbjct: 182 QATRDTFDAVPDPRLAIAVGACAISGGIFAASAETRGGAPGVMPVDLYVPGCPPHPLTIL 241
Query: 168 YGILLLQ 174
G+L L
Sbjct: 242 DGLLRLL 248
>gi|320101195|ref|YP_004176787.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfurococcus
mucosus DSM 2162]
gi|319753547|gb|ADV65305.1| NADH dehydrogenase (ubiquinone) 30 kDa subunit [Desulfurococcus
mucosus DSM 2162]
Length = 338
Score = 133 bits (336), Expect = 9e-30, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 73/139 (52%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+++ W+ + SL + + AC AVE M D ER+G+ P SPRQSD+ I G L
Sbjct: 3 LEKAAKWSFSRSLWMIHYCSACGAVEFPPLVMSPLDWERYGYMPTPSPRQSDLYIGMGYL 62
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T K +Y QMPEPR V++ +C + GG Y SY+ + D V V+ +VPGC P
Sbjct: 63 TKKTVKLFLNMYRQMPEPRLVLAGCNCTSTGGLYWDSYATYKRLDDFVEVEGWVPGCMPM 122
Query: 163 AEALIYGILLLQKKIRRVG 181
+ I +++ I G
Sbjct: 123 PDDYTAMIEHVRRDIAGRG 141
>gi|220904047|ref|YP_002479359.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868346|gb|ACL48681.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 254
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 64/115 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + +DL RFG ASPR +D +++ G ++ M A Y+ PEP
Sbjct: 140 GCNACEADCNVLGTLVFDLPRFGIDFVASPRHADGIVLTGPVSENMRLAAIDTYNATPEP 199
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
R V+++G+CA GG + + G I+PVD++VPGCPP ++ G+L+L++
Sbjct: 200 RLVVAVGACAISGGLFRDAPQCNNGIADILPVDLFVPGCPPNPWTILDGLLMLRE 254
>gi|251792877|ref|YP_003007603.1| hydrogenase-4 subunit I [Aggregatibacter aphrophilus NJ8700]
gi|247534270|gb|ACS97516.1| hydrogenase-4 component I [Aggregatibacter aphrophilus NJ8700]
Length = 258
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Query: 21 KVDADFSRISSEIT-HKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYD 78
++ + IS+ + + L R+ + + G C +E+ P +D
Sbjct: 4 QIPMPVNGISTPFSIDENIAKMKQALLKNIQRSAYVYRVDCGGCNGCEIEIFSTITPVFD 63
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
ERFG ASPR +D+++ G++T M + R Y P+P+ I+ G+C GGG +H
Sbjct: 64 AERFGIKVVASPRHADILLFTGSVTRAMRTPAMRAYQAAPDPKICIAYGACGCGGGIFHD 123
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIR 178
Y V G D+IVPVD+Y+PGCPPT A IYG + L +K++
Sbjct: 124 LYCVWGGSDQIVPVDVYIPGCPPTPAATIYGFAMALGLLDQKLK 167
>gi|288961341|ref|YP_003451680.1| NADH dehydrogenase I chain B [Azospirillum sp. B510]
gi|288913649|dbj|BAI75136.1| NADH dehydrogenase I chain B [Azospirillum sp. B510]
Length = 163
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 77/134 (57%), Gaps = 4/134 (2%)
Query: 43 VDQLVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
++++V +R S C +E+ PRYD E+ G +P+ +D+++++
Sbjct: 4 IERVVAISRRRSPWICRLNAGSCNGCDIEITPLLSPRYDAEQLGIELHGTPKHADIVLIS 63
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV-RGCDRIVPVDIYVPG 158
GTLT + A+ +YDQ+P P+ V+++GSC G + S V+ + D +VPVD++VPG
Sbjct: 64 GTLTLRSRQAILDIYDQVPSPKAVVALGSCPLSGNVFAGSPLVLGQSLDSLVPVDVWVPG 123
Query: 159 CPPTAEALIYGILL 172
CPP +A++ GI
Sbjct: 124 CPPRPQAILDGIAR 137
>gi|150402630|ref|YP_001329924.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
maripaludis C7]
gi|150033660|gb|ABR65773.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
maripaludis C7]
Length = 156
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 16/152 (10%)
Query: 46 LVTWARTGSL-MWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ + R S+ + + C C +E++ P+YD+E++G +PR++DV++V G +
Sbjct: 2 IKDFVRKRSINVCLVNTGGCNGCDIEVVSCLAPKYDIEQYGIYVHNNPREADVLVVTGPV 61
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T L +Y++ PEP+ VI++G+CA GG + + D ++PVD +PGCPP
Sbjct: 62 TGAWEKRLLEIYEKTPEPKIVIAVGACALSGGIFKEG-HIHGPVDSVIPVDAKLPGCPPR 120
Query: 163 AEALIYGIL------------LLQKKIRRVGN 182
+I ++ LL +K++ N
Sbjct: 121 PSEIISAVVAIAPDALAAKEKLLNQKLKEEKN 152
>gi|89895860|ref|YP_519347.1| formate hydrogenlyase subunit 7 [Desulfitobacterium hafniense Y51]
gi|89335308|dbj|BAE84903.1| formate hydrogenlyase subunit 7 [Desulfitobacterium hafniense Y51]
Length = 155
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 52 TGSLMWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S C EM P YDL+RFG ASPR +D+++ G ++ +
Sbjct: 30 RQSWHIRHLDCGSCNGCDWEMSALLNPIYDLQRFGLDFVASPRHADILMCTGPMSTHLIQ 89
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
A Y+ P P+ +I++G CA GG + +Y+ G +PVDI +PGCPP+ + L+
Sbjct: 90 AALATYEGTPNPKRIIAVGDCALDGGMFKEAYAAHNGVGEALPVDIKIPGCPPSPDELLK 149
Query: 169 GILLLQ 174
+L L+
Sbjct: 150 VLLQLK 155
>gi|134045163|ref|YP_001096649.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus
maripaludis C5]
gi|132662788|gb|ABO34434.1| membrane-bound hydrogenase subunit ehaN [Methanococcus maripaludis
C5]
Length = 156
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 16/152 (10%)
Query: 46 LVTWARTGSL-MWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ + R S+ + + C C +E++ PRYD+E++G +PR++DV++V G +
Sbjct: 2 IKDFVRKRSINVCLVNTGGCNGCDIEVVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPV 61
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T L +Y++ PEP+ VI++G+CA GG + + D ++PVD +PGCPP
Sbjct: 62 TGAWEKRLLEIYEKTPEPKIVIAVGACALSGGIFKEG-HIHGPVDSVIPVDAKLPGCPPR 120
Query: 163 AEALIYGIL------------LLQKKIRRVGN 182
+I ++ LL +K++ N
Sbjct: 121 PSEIISAVVTIAPDALAAKEKLLNQKLKEEKN 152
>gi|159905595|ref|YP_001549257.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
maripaludis C6]
gi|159887088|gb|ABX02025.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
maripaludis C6]
Length = 156
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 16/152 (10%)
Query: 46 LVTWARTGSL-MWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ + R S+ + + C C +E++ PRYD+E++G +PR++DV++V G +
Sbjct: 2 IKDFVRKRSINVCLVNTGGCNGCDIEVVSCLAPRYDIEQYGIYVHNNPREADVLVVTGPV 61
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T L +Y++ PEP+ VI++G+CA GG + + D ++PVD +PGCPP
Sbjct: 62 TGAWEKRLLEIYEKTPEPKIVIAVGACALSGGIFKEG-HIHGPVDSVIPVDAKLPGCPPR 120
Query: 163 AEALIYGIL------------LLQKKIRRVGN 182
+I ++ LL +K++ N
Sbjct: 121 PSEIISAVVAIAPDALAAKEKLLNQKLKEEKN 152
>gi|296241798|ref|YP_003649285.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermosphaera
aggregans DSM 11486]
gi|296094382|gb|ADG90333.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermosphaera
aggregans DSM 11486]
Length = 156
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 17/146 (11%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S+ C +E++ P +D ERFG SPR +D +++ G +T +
Sbjct: 6 KKSIWVFHLNTGSCNACDIEILDVLTPFHDAERFGVKLVTSPRHADAILLTGPITAEALP 65
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--------DRIVPVD--IYVPG 158
+ + P PR VI++GSC GGG +H +YS + G ++ V VD YVPG
Sbjct: 66 KVINAIEAAPRPRVVIALGSCGVGGGIWHDTYSTIGGIKGLQKILEEKGVKVDAFYYVPG 125
Query: 159 CPPTAEALIYGIL----LLQKKIRRV 180
CP EA++Y + L+QKK++
Sbjct: 126 CPIRPEAILYAVALFKGLVQKKVKSE 151
>gi|153006624|ref|YP_001380949.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
Fw109-5]
gi|152030197|gb|ABS27965.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
Fw109-5]
Length = 256
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 35 HKGFLVTSVDQLVT--WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L ++D + + R+ L ++ C E+ A ++DL RFG ASPR
Sbjct: 107 DEPVLAAALDAEMRRVFGRSLKLRQVSAAGCNGCEAELNAAGNIQFDLGRFGIQFVASPR 166
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
+D ++V G ++ M AL++ Y+ +P PR VI++G+CA GG + S G +P
Sbjct: 167 HADGIVVTGPVSENMRLALQKTYEAVPAPRLVIAVGACAISGGVFRESPVSCGGAAAALP 226
Query: 152 ---VDIYVPGCPPTAEALIYGILLLQKKI 177
VD+YVPGCPP + G+L + ++
Sbjct: 227 GVRVDLYVPGCPPHPITFLDGMLRMLGRL 255
>gi|116191457|ref|XP_001221541.1| hypothetical protein CHGG_05446 [Chaetomium globosum CBS 148.51]
gi|88181359|gb|EAQ88827.1| hypothetical protein CHGG_05446 [Chaetomium globosum CBS 148.51]
Length = 189
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 87/175 (49%), Gaps = 47/175 (26%)
Query: 7 NQKIISGQSSCSLEKVDADFSRISSEITHK---GFLVTSVDQLVTWARTGSLMWMTFGLA 63
+ + S + +S+E + ++++D L+ WAR GSL M+FGLA
Sbjct: 47 STEQTSPARQPRIPPPVRPTLAVSTEKRPNSVTEYALSTLDGLINWARQGSLWPMSFGLA 106
Query: 64 CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
CCA+EMM SMPRYD +R G RASPRQSDVMIVAG
Sbjct: 107 CCAIEMMHLSMPRYDNDRQGIIFRASPRQSDVMIVAG----------------------- 143
Query: 124 ISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
G DRIVPVDIYVPGCPPTAEAL YGI LQKK+
Sbjct: 144 ---------------------GVDRIVPVDIYVPGCPPTAEALQYGIFQLQKKMA 177
>gi|289641804|ref|ZP_06473961.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia symbiont of
Datisca glomerata]
gi|289508329|gb|EFD29271.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia symbiont of
Datisca glomerata]
Length = 160
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 45/116 (38%), Positives = 65/116 (56%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ A P YD ER+G ASPR +DV++V G +T MA LRR + P P
Sbjct: 45 SCNGCEIEIAAAFGPVYDAERYGARVVASPRHADVLLVTGPVTRNMAEPLRRTVEATPRP 104
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
R VI++G CA G + Y V +VPVD+ VPGCPP +A++ + + ++
Sbjct: 105 RLVIAVGDCALNCGEFAGGYGVQGPVADVVPVDLQVPGCPPEPDAIVAALRTVTRR 160
>gi|218888275|ref|YP_002437596.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|218759229|gb|ACL10128.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 146
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 53 GSLMWMTFG---LACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S C VE+ + PRYD+ER G SPR +D++++ G LT ++
Sbjct: 10 RSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKD 69
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
+ RV+D++PEP+ +++G C GG + YS+ DR +PVD+ VPGCPP +A+I
Sbjct: 70 KVLRVWDEIPEPKVTVAVGICPVSGGVFRDGYSIEGPIDRYIPVDVNVPGCPPRPQAIIE 129
Query: 169 GILLLQK 175
G++ +
Sbjct: 130 GVIKARD 136
>gi|152990463|ref|YP_001356185.1| Ni-Fe hydrogenase, small subunit HycG [Nitratiruptor sp. SB155-2]
gi|151422324|dbj|BAF69828.1| Ni-Fe hydrogenase, small subunit HycG [Nitratiruptor sp. SB155-2]
Length = 167
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E S P YDLER G ASPR +D+++V+G +T M L Y+Q+P P
Sbjct: 52 SCNACEAECNALSNPYYDLERLGIRFVASPRHADILLVSGVVTFNMLPHLLDAYEQLPSP 111
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
++VI++G C G + S+++ +PV ++PGCPPT + ++ G L
Sbjct: 112 KWVITLGDC-TQGTLFKDSFAIKGPVKEHLPVAYHIPGCPPTPDEIVRGFL 161
>gi|110289458|gb|AAP54717.2| NAD, putative [Oryza sativa Japonica Group]
Length = 141
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 42/76 (55%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
MA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP E
Sbjct: 1 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 60
Query: 165 ALIYGILLLQKKIRRV 180
A+I + L+KKI R
Sbjct: 61 AVIDALTKLRKKISRE 76
>gi|301167470|emb|CBW27053.1| putative NADH-quinone oxidoreductase chain B [Bacteriovorax marinus
SJ]
Length = 172
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 84/139 (60%), Gaps = 2/139 (1%)
Query: 41 TSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAG 100
T +++ W T S + TF ACC+ E +Y + F F R + SD++I++G
Sbjct: 29 TFIERFHNWVNTHSTVPFTFATACCSSEYYSIFDDQYPEDNF-FPERVEAQNSDLLIISG 87
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCP 160
++ K L+ +Y +MP+ ++V+ +G+C GG + S+++V + +PVDI++PGCP
Sbjct: 88 SVNLKTYPLLKDIYKEMPKDKWVVVIGACPMSGGPFS-SFNIVPDISKDIPVDIFIPGCP 146
Query: 161 PTAEALIYGILLLQKKIRR 179
P+ + + +G+ LL++++R+
Sbjct: 147 PSPKEIAHGMSLLKERMRK 165
>gi|119719099|ref|YP_919594.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermofilum pendens
Hrk 5]
gi|119524219|gb|ABL77591.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Thermofilum pendens
Hrk 5]
Length = 245
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ A P +D+ER G SPR +DV++V G +T + L+ Y+ P+P
Sbjct: 26 SCNGCDIEVFDALTPYFDVERLGVKLVLSPRMADVILVTGPVTRQFLPVLKATYEAAPKP 85
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKK 176
V++ G+CA GGG ++ +Y G D+++PVD+Y+PGCPP A+++G+ + L++K
Sbjct: 86 CVVVACGACACGGGIWYDTYGTAGGVDKVIPVDVYIPGCPPRPHAILHGVAVALDILEQK 145
Query: 177 IRRVGN 182
++R
Sbjct: 146 VKRSET 151
>gi|89902056|ref|YP_524527.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
ferrireducens T118]
gi|89346793|gb|ABD70996.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
ferrireducens T118]
Length = 171
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 66/116 (56%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P Y++E G ASPR +D+++V G ++ M +AL+R +D +PEP
Sbjct: 54 SCNGCELEINALGNPYYNIEGLGIKFVASPRHADMLLVTGPVSRNMVTALKRTFDAIPEP 113
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
+ V+++G C GG + SY+ ++PVD +PGCPP ++ GIL ++
Sbjct: 114 KLVVAVGDCGCDGGIFGESYASCGRVSNVIPVDWVIPGCPPPPIEILRGILTAVRR 169
>gi|5734540|emb|CAB52769.1| hydrogenase small subunit [Methanothermobacter thermautotrophicus]
Length = 148
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 4/133 (3%)
Query: 43 VDQLVTWARTGSLMW-MTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+D L + R S+ + C C +E++ PRYDLE++G +PR++DV++V
Sbjct: 2 LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPG 158
G +T + L+R+Y + PEP+ V+++G+C G + SV +PVD+ VPG
Sbjct: 62 GAVTEQWREKLQRIYSKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDVEVPG 121
Query: 159 CPPTAEALIYGIL 171
CPP ++ IL
Sbjct: 122 CPPRPFEILEAIL 134
>gi|270308816|ref|YP_003330874.1| hydrogenase, HycG subunit [Dehalococcoides sp. VS]
gi|270154708|gb|ACZ62546.1| hydrogenase, HycG subunit [Dehalococcoides sp. VS]
Length = 171
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 9/179 (5%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ V I + + + D+DF ++ + T + + + R+ ++ + G
Sbjct: 1 MKNVLNNIFKPKVCRQMPEGDSDFDKLGIALK------TEIHAI--FGRSLAIRALDSGS 52
Query: 63 ACCA-VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
A +E+ S P YD+ERFG + ASPR +D++IV G ++ MA A+R+ +D MP P+
Sbjct: 53 DNSAEIELNNLSNPYYDIERFGISFVASPRHADILIVTGAVSQNMAIAVRKTFDAMPSPK 112
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
VI++G A G G Y V+ G D+I+ VD+ +PG PP +I +L L + + +
Sbjct: 113 LVIALGDDACGNGIVCSGYGVLGGVDKILLVDLKIPGNPPEPIQIITALLGLMRSLGKK 171
>gi|114775564|ref|ZP_01451132.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1]
gi|114553675|gb|EAU56056.1| hydrogenase subunit [Mariprofundus ferrooxydans PV-1]
Length = 169
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + YD+ERFG ASPR +D+++V G ++ M AL Y+ +P
Sbjct: 52 SCNGCELEIHATNNAYYDIERFGIHFTASPRFADMLLVTGPVSVNMRKALEMTYNATSDP 111
Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
+ V++MG CA G + +Y++ I+PVD+ + GCPPT +I GIL +
Sbjct: 112 KLVVAMGDCAVNCGVFGRDNYAIAGAVSDIIPVDVVIHGCPPTPTDIIRGILAAAEM 168
>gi|303325626|ref|ZP_07356069.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio
sp. 3_1_syn3]
gi|302863542|gb|EFL86473.1| carbon monoxide-induced hydrogenase, CooL subunit [Desulfovibrio
sp. 3_1_syn3]
Length = 149
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 4/136 (2%)
Query: 43 VDQLVTWARTGSLMWMTFG---LACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIV 98
+D L+ S C VE+ + PRYD+ER G SPR +D++++
Sbjct: 3 LDNLLKKLSVRSPWLFRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPRHADIVLI 62
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
G LT ++ + RV+ ++PEP+ +++G C GG + YS+ DR +PVD+ VPG
Sbjct: 63 TGPLTTRVRDRVLRVWHEIPEPKVTVAVGICPISGGVFREGYSIEGPIDRYLPVDVNVPG 122
Query: 159 CPPTAEALIYGILLLQ 174
CPP +A++ G++L +
Sbjct: 123 CPPRPQAILEGVVLAR 138
>gi|303243649|ref|ZP_07329990.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
gi|302485891|gb|EFL48814.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
Length = 155
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/112 (34%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C +E++ PRYD+E++G +PR++D+++V G +T + L+ +Y++ PEP
Sbjct: 20 GCNGCDIELVATLAPRYDIEQYGIHVHNNPREADILVVTGPVTLPWKNRLKEIYEKTPEP 79
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
+ VI++G+CA G + V D+I+PV+ VPGCPP +I +L
Sbjct: 80 KIVIAVGACALSCGIFKEG-HVCGPVDKIIPVNAKVPGCPPRPAEIIEAVLK 130
>gi|222632346|gb|EEE64478.1| hypothetical protein OsJ_19328 [Oryza sativa Japonica Group]
Length = 976
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 64/77 (83%), Positives = 69/77 (89%)
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
AS+ +VYDQMPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE
Sbjct: 892 SWASSASQVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 951
Query: 165 ALIYGILLLQKKIRRVG 181
AL+YG+L LQKKI R
Sbjct: 952 ALLYGVLQLQKKINRRR 968
>gi|322420679|ref|YP_004199902.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
gi|320127066|gb|ADW14626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
Length = 252
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 42/106 (39%), Positives = 59/106 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + S +D+ RFG ASPR +D + V G +T M AL YD +P P
Sbjct: 135 GCNACEADSNVLSTIGWDIGRFGLQFVASPRHADALWVTGPVTENMREALMMTYDAIPAP 194
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
+ VI+ G+CA GG + S + G DR++PVD+Y+PGCPP +
Sbjct: 195 KLVIACGACAINGGPFIGSPAAHDGVDRLLPVDLYIPGCPPHPVTI 240
>gi|220905144|ref|YP_002480456.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219869443|gb|ACL49778.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 149
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Query: 42 SVDQLVTWARTGSLMWMTFG---LACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMI 97
S+D ++ S C VE+ + PRYD+ER G SPR +D+++
Sbjct: 2 SLDNMLKKLSVRSPWLFRINAGSCNGCDVELATTACIPRYDVERLGCRYCGSPRHADIVL 61
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+ G LT ++ + RV+D++PEP+ +++G C GG + YS+ DR +PVD+ VP
Sbjct: 62 ITGPLTTRVRDRVLRVWDEIPEPKVTVAVGICPISGGVFREGYSIEGPIDRYLPVDVNVP 121
Query: 158 GCPPTAEALIYGILLLQ 174
GCPP +A++ G++L +
Sbjct: 122 GCPPRPQAILEGVVLAR 138
>gi|313904888|ref|ZP_07838260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eubacterium
cellulosolvens 6]
gi|313470321|gb|EFR65651.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eubacterium
cellulosolvens 6]
Length = 156
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S + + C +E++ + P YD ERFG P Q+D+ +V G + ++
Sbjct: 5 KRSPWLLHYDGASCNGCDIEVLASLTPVYDAERFGVENTGDPMQADIFLVTGGINDQCYD 64
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
++++YDQMP P+ V+++G CA GG + +Y + G D +PVDIYVPGC +A+I
Sbjct: 65 VVKQLYDQMPRPKVVVAVGVCACTGGIFKDAYGIHGGVDTCIPVDIYVPGCAARPQAIID 124
Query: 169 GILLLQKKIRRVG 181
GI+ + ++
Sbjct: 125 GIVKAVELFQKRS 137
>gi|302879581|ref|YP_003848145.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella
capsiferriformans ES-2]
gi|302582370|gb|ADL56381.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella
capsiferriformans ES-2]
Length = 171
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + Y+LE G ASPR +D+++V G ++ M AL+R Y+ P+P
Sbjct: 53 SCNGCELEIHAVNNAYYNLEGLGIKFVASPRHADMLLVTGPVSRHMEVALKRTYEATPDP 112
Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
+ V+++G CA GG + +Y+ ++ VD+ V GCPPT A++ IL
Sbjct: 113 KLVVAIGECACNGGIFGTDNYASCGNIANVISVDVAVSGCPPTPVAILQAILT 165
>gi|152991860|ref|YP_001357581.1| Ni-Fe hydrogenase, small subunit HycG [Sulfurovum sp. NBC37-1]
gi|151423721|dbj|BAF71224.1| Ni-Fe hydrogenase, small subunit HycG [Sulfurovum sp. NBC37-1]
Length = 168
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 43/117 (36%), Positives = 63/117 (53%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E S P YDLER G ASPR +DVM++ G +T M + Y Q+PEP
Sbjct: 52 SCNACEAECNALSNPYYDLERLGIYFVASPRHADVMLLNGLMTFNMTPHVLDAYKQIPEP 111
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
++VI++G+C + +++V +PV ++PGCPP +I G+L KKI
Sbjct: 112 KWVITLGACPVMEAPFEKTFAVKAPAADHLPVAHHIPGCPPEPLEIIRGLLEFLKKI 168
>gi|325578545|ref|ZP_08148645.1| hydrogenase-4 component I [Haemophilus parainfluenzae ATCC 33392]
gi|325159781|gb|EGC71911.1| hydrogenase-4 component I [Haemophilus parainfluenzae ATCC 33392]
Length = 258
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 6/164 (3%)
Query: 21 KVDADFSRISSEIT-HKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYD 78
++ + IS+ + + L R+ + + G C +E+ P +D
Sbjct: 4 QIPMPVNGISTPFSIDENIAKMKQTLLKDIQRSAYVYRVDCGGCNGCEIEIFSTITPTFD 63
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
ERFG ASPR +D+++ G +T M + R Y P+P+ I+ G+C GGG +H
Sbjct: 64 AERFGIKVVASPRHADILLFTGAVTRAMRTPAMRAYQAAPDPKICIAYGACGCGGGIFHD 123
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
Y V G D+IVPVD+Y+PGCPPT A IYG LL +K++
Sbjct: 124 LYCVWGGSDQIVPVDVYIPGCPPTPAATIYGFAVALGLLDQKLK 167
>gi|301156407|emb|CBW15878.1| hydrogenase 3 and formate hydrogenase complex, HycG subunit
[Haemophilus parainfluenzae T3T1]
Length = 258
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 84/164 (51%), Gaps = 6/164 (3%)
Query: 21 KVDADFSRISSEIT-HKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYD 78
++ + IS+ + + L R+ + + G C +E+ P +D
Sbjct: 4 QIPMPVNGISTPFSIDENIAKMKQTLLKDIQRSAYVYRVDCGGCNGCEIEIFSTITPTFD 63
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
ERFG ASPR +D+++ G +T M + R Y P+P+ I+ G+C GGG +H
Sbjct: 64 AERFGIKVVASPRHADILLFTGAVTRAMRTPAMRAYQAAPDPKICIAYGACGCGGGIFHD 123
Query: 139 SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKIR 178
Y V G D+IVPVD+Y+PGCPPT A IYG LL +K++
Sbjct: 124 LYCVWGGSDQIVPVDVYIPGCPPTPAATIYGFAVALGLLDQKLK 167
>gi|325529420|gb|EGD06341.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Burkholderia sp.
TJI49]
Length = 273
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 3/142 (2%)
Query: 25 DFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLER 81
+ + + + +V V A SL C E+ P Y+L R
Sbjct: 107 ERADLKWDAAMSQRIVREVVDSTRRAFGRSLHVRHVDAGSCNGCESELQALDNPFYNLHR 166
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
G SPR +DV++V G +T M L ++ MP PR+VI+ G+CA GG +Y+
Sbjct: 167 LGIFFTPSPRFADVLLVTGPVTKAMRQPLLETWEAMPSPRWVIATGTCAVSGGMTGGNYA 226
Query: 142 VVRGCDRIVPVDIYVPGCPPTA 163
G D ++PVDIY+PGCPP
Sbjct: 227 CGTGLDGVLPVDIYLPGCPPNP 248
>gi|15678425|ref|NP_275540.1| formate hydrogenlyase, subunit 7 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2621459|gb|AAB84903.1| formate hydrogenlyase, subunit 7 [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 148
Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 43 VDQLVTWARTGSLMW-MTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+D L + R S+ + C C +E++ PRYDLE++G +PR++DV++V
Sbjct: 2 LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPG 158
G +T + L+R+Y + PEP+ V+++G+C G + SV +PVD VPG
Sbjct: 62 GAVTEQWREKLQRIYRKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDAEVPG 121
Query: 159 CPPTAEALIYGIL 171
CPP ++ IL
Sbjct: 122 CPPRPSEILEAIL 134
>gi|167898184|ref|ZP_02485586.1| putative hydrogenase subunit [Burkholderia pseudomallei 7894]
Length = 158
Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 59/106 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P Y++E G ASPR +D++++ G LT M A+R YD P P
Sbjct: 53 SCNGCELELHALGNPYYNIEGLGIKFVASPRHADMLLITGPLTLNMRDAVRLAYDATPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
+ V++ G CA GG + SY+V + +VPVD+ +PGCPP L
Sbjct: 113 KLVVAAGDCACTGGVFAGSYAVCGPIETLVPVDVAIPGCPPRPIEL 158
>gi|297837947|ref|XP_002886855.1| hypothetical protein ARALYDRAFT_475566 [Arabidopsis lyrata subsp.
lyrata]
gi|297840985|ref|XP_002888374.1| hypothetical protein ARALYDRAFT_475599 [Arabidopsis lyrata subsp.
lyrata]
gi|297332696|gb|EFH63114.1| hypothetical protein ARALYDRAFT_475566 [Arabidopsis lyrata subsp.
lyrata]
gi|297334215|gb|EFH64633.1| hypothetical protein ARALYDRAFT_475599 [Arabidopsis lyrata subsp.
lyrata]
Length = 141
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/76 (56%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
MA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP E
Sbjct: 1 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPE 60
Query: 165 ALIYGILLLQKKIRRV 180
A+I I L+KKI R
Sbjct: 61 AVIDAITKLRKKIARE 76
>gi|320100262|ref|YP_004175854.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurococcus
mucosus DSM 2162]
gi|319752614|gb|ADV64372.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurococcus
mucosus DSM 2162]
Length = 152
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 13/142 (9%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S+ C +E++ A P +D ERFG SPR +DV+++ G +T +
Sbjct: 2 KKSIWVYHLNTGSCNACDIEILDALTPFHDAERFGVKLVGSPRHADVILMTGPVTLETLP 61
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--------DRIVPVD--IYVPG 158
+ + P PR +I++GSC GGG +H +YS + G +R + VD YVPG
Sbjct: 62 KVLNAIEAAPRPRIIIALGSCGVGGGIWHDTYSTIGGIKGLEKMLKERGIRVDAIYYVPG 121
Query: 159 CPPTAEALIYGILLLQKKIRRV 180
CP EAL+Y I L++ + +
Sbjct: 122 CPIRPEALLYAIALIKGLVAKK 143
>gi|118463973|ref|YP_884232.1| hydrogenase-4, I subunit, putative [Mycobacterium avium 104]
gi|118165260|gb|ABK66157.1| hydrogenase-4, I subunit, putative [Mycobacterium avium 104]
Length = 135
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 46/116 (39%), Positives = 60/116 (51%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C VE+ A P YD ERFG ASPR +D ++V G +T M LR P+P
Sbjct: 20 SCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMVEPLRNTLAATPQP 79
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
R VI+ G CA G + +Y VV IVPVD+ V GCPPT ++ + + K
Sbjct: 80 RVVIACGDCALNRGVFTDAYGVVGAVGEIVPVDVEVAGCPPTPAQIVDALRSVTGK 135
>gi|224373087|ref|YP_002607459.1| hydrogenase-4 component I [Nautilia profundicola AmH]
gi|223589382|gb|ACM93118.1| hydrogenase-4 component I [Nautilia profundicola AmH]
Length = 142
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 5/123 (4%)
Query: 61 GLACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
C VE+ +M PRYD+ER G SP+ +D+++V G +T + L V D++P
Sbjct: 17 SCNGCDVELATTAMIPRYDVERLGCRYTGSPKHADILLVTGPITARSKPYLLEVLDELPN 76
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK---- 175
P V+++G+C G + SY++ DR V VD+ VPGCPP +A+I G+ +
Sbjct: 77 PFVVVAVGTCPTSCGIFRDSYAIEGPLDRYVKVDVNVPGCPPRPQAIIDGVAKALEIWKQ 136
Query: 176 KIR 178
KIR
Sbjct: 137 KIR 139
>gi|304314558|ref|YP_003849705.1| energy-converting hydrogenase A, subunit N [Methanothermobacter
marburgensis str. Marburg]
gi|302588017|gb|ADL58392.1| energy-converting hydrogenase A, subunit N [Methanothermobacter
marburgensis str. Marburg]
Length = 148
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 43 VDQLVTWARTGSLMW-MTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+D L + R S+ + C C +E++ PRYDLE++G +PR++DV++V
Sbjct: 2 LDALKSILRKTSIHVCLVNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVT 61
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPG 158
G +T + L+R+Y + PEP+ V+++G+C G + SV +PVD VPG
Sbjct: 62 GAVTEQWREKLQRIYSKAPEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDAEVPG 121
Query: 159 CPPTAEALIYGIL 171
CPP ++ IL
Sbjct: 122 CPPRPSEILEAIL 134
>gi|239905427|ref|YP_002952166.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1]
gi|239795291|dbj|BAH74280.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1]
Length = 258
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/114 (35%), Positives = 59/114 (51%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + + +DL RFG ASPR +D + V G +T M A + +P+P
Sbjct: 136 GCNACEADTNVLTTIVFDLGRFGIDFVASPRHADGVAVTGPVTRNMLEATLGTFAAVPDP 195
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
R I++G+CA GG + S G +PVD+Y+PGCPP ++ G+L L
Sbjct: 196 RVGIAIGTCAISGGLFAGSPETTGGATPHLPVDLYIPGCPPHPLTILDGLLRLL 249
>gi|218884334|ref|YP_002428716.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfurococcus
kamchatkensis 1221n]
gi|218765950|gb|ACL11349.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfurococcus
kamchatkensis 1221n]
Length = 156
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 13/142 (9%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S+ C +E++ A P +D ERFG SPR +DV+++ G +T +
Sbjct: 6 KKSIWVFHLNTGSCNACDIEILDALTPFHDAERFGVKLVGSPRHADVILLTGPITIETLP 65
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--------DRIVPVD--IYVPG 158
+ + P PR ++++GSC GGG +H +YS + G ++ + VD YVPG
Sbjct: 66 KVINAIEAAPRPRIIVALGSCGVGGGIWHDTYSTIGGVRSLKKILDEKGIQVDGIYYVPG 125
Query: 159 CPPTAEALIYGILLLQKKIRRV 180
CP EAL+Y I L++ + +
Sbjct: 126 CPIRPEALLYAIALIKGLVSKK 147
>gi|283853523|ref|ZP_06370764.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp.
FW1012B]
gi|283571104|gb|EFC19123.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp.
FW1012B]
Length = 253
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 1/127 (0%)
Query: 49 WARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+AR+ L ++ G C ++ + +DL RFG ASPR +D + V G +T M
Sbjct: 122 FARSLKLRQVSAGGCNACEADLNVLTTVVFDLGRFGIDFVASPRHADGVAVTGPVTVNML 181
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
+A R +D +P+PR I++G+CA GG + S G +PVD+++PGCPP ++
Sbjct: 182 AATRATFDAVPDPRVAIAVGACAISGGVFAGSPETTGGATPHLPVDLFIPGCPPHPLTIL 241
Query: 168 YGILLLQ 174
G+L L
Sbjct: 242 DGLLSLL 248
>gi|197119557|ref|YP_002139984.1| Ech-hydrogenase-like complex small subunit [Geobacter bemidjiensis
Bem]
gi|197088917|gb|ACH40188.1| Ech-hydrogenase-related complex, small subunit [Geobacter
bemidjiensis Bem]
Length = 252
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 57/106 (53%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + S +DL RFG ASPR +D + V G +T M AL Y+ +P P
Sbjct: 135 GCNACEADTNVLSTIGWDLGRFGIQFVASPRHADGLWVTGPVTEHMREALLLTYEAIPAP 194
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
+ V++ G+CA GG + S G + ++PVD+Y+PGCPP +
Sbjct: 195 KLVVACGACAISGGPFRGSPEAHDGVEGMLPVDLYIPGCPPHPVTI 240
>gi|78708331|gb|ABB47306.1| NAD, putative [Oryza sativa Japonica Group]
Length = 141
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
MA +L R+Y+QMPEP+YVI+MG+C GG + SYS VR D+++PVD+Y+PGCPP E
Sbjct: 1 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRRVDKLIPVDVYLPGCPPKPE 60
Query: 165 ALIYGILLLQKKIRRV 180
A+I + L+KKI R
Sbjct: 61 AVIDALTKLRKKISRE 76
>gi|90425976|ref|YP_534346.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris BisB18]
gi|90107990|gb|ABD90027.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris BisB18]
Length = 144
Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 73/130 (56%), Gaps = 4/130 (3%)
Query: 50 ARTGSLMWMTFG---LACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
A S C VE+ + PRYD+ER G SP+ +D++++ G LT +
Sbjct: 9 AAKKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCQYCGSPKHADIVLITGPLTAR 68
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
+ + RV+D++P+P+ +++G C GG + SY++ DR +PVD+ VPGCPP +A
Sbjct: 69 VKDRVLRVFDEIPDPKVTVAIGICPISGGVFRESYAIEGPIDRYLPVDVNVPGCPPRPQA 128
Query: 166 LIYGILLLQK 175
+I GI + +
Sbjct: 129 IIEGIAMAIE 138
>gi|296136161|ref|YP_003643403.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12]
gi|295796283|gb|ADG31073.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12]
Length = 273
Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 40/103 (38%), Positives = 58/103 (56%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E+ P Y+L R G SPR +D+++V G +T M L R Y+ MP+P
Sbjct: 145 SCNGCESELQALLNPFYNLHRLGVFFTPSPRFADLLLVTGPVTAAMREPLLRTYEAMPQP 204
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
R+V++ G+CA GG Y+ G D I+PVD+++PGCPP
Sbjct: 205 RWVMAAGTCATGGSTNGGGYACHEGLDGILPVDVWLPGCPPNP 247
>gi|212224722|ref|YP_002307958.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
[Thermococcus onnurineus NA1]
gi|212009679|gb|ACJ17061.1| Hydrogenase 4, component I or formate hydrogen lyase, subunit 7
[Thermococcus onnurineus NA1]
Length = 273
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 31/162 (19%)
Query: 53 GSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
S+ C +E++ P YD+ERFG SPR + ++V+G LT +
Sbjct: 8 RSIWVFHLNTGSCNGCDIEIIDVLTPFYDVERFGIKLVGSPRHAHALLVSGPLTRQAYYG 67
Query: 110 LRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVVR---------------GCDRIV--- 150
+ M PEPR ++++G+C GG ++ Y V R G ++
Sbjct: 68 AKETIKAMPPEPRVIVAIGTCTCSGGIFYNGYPVYRRPESGREGSEYPRRGGIAELIADL 127
Query: 151 --------PVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
PV IY+PGCPP E +IYGI L + + + +
Sbjct: 128 RDEGEKVGPV-IYIPGCPPRPEEIIYGIAQLVGLVEKKLSYQ 168
>gi|296166652|ref|ZP_06849078.1| NADH-ubiquinone oxidoreductase [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897987|gb|EFG77567.1| NADH-ubiquinone oxidoreductase [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 159
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 45/116 (38%), Positives = 62/116 (53%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C VE+ A P YD ERFG ASPR +D ++V G +T+ MA LR + P P
Sbjct: 44 SCNGCEVEIAGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRTTIEATPRP 103
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
R VI+ G CA G + +Y V +VPVD+ +PGCPPT ++ + + K
Sbjct: 104 RRVIACGDCAIDRGVFGDAYGVAGAVGEVVPVDVEIPGCPPTPAQIVAALRSVTGK 159
>gi|261856376|ref|YP_003263659.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus
neapolitanus c2]
gi|261836845|gb|ACX96612.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus
neapolitanus c2]
Length = 274
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 6/177 (3%)
Query: 4 TTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQ-LVTWARTGSLMWMTFG- 61
T + + AD SR++ T L + L + R SL
Sbjct: 88 TCPSGAFSPSNDWAFAVRDRADLSRLARPATPDKKLEEKWQKSLAGFGR--SLHIRHVDA 145
Query: 62 --LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
C E+ P Y+L R G SPR +D+++V G +T M L R ++ MPE
Sbjct: 146 GSCNGCESEISALLNPFYNLHRLGVFFTPSPRFADLLLVTGPVTEVMREPLLRTFEAMPE 205
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
PR+V+++G+CA GGG Y+ +G D I+PVDI++PGCPP A+I +L+L +
Sbjct: 206 PRWVMALGTCATGGGTNGGGYACHQGLDGILPVDIWLPGCPPNPAAIIEALLVLLDR 262
>gi|150400803|ref|YP_001324569.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
aeolicus Nankai-3]
gi|150013506|gb|ABR55957.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
aeolicus Nankai-3]
Length = 153
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C +E++ PRYD+E++G +PR++D++++ G +T L +Y++ PEP
Sbjct: 20 GCNGCDIELVSTLAPRYDIEQYGVYVHNNPREADILVITGPVTLPWKDKLVEIYEKTPEP 79
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
+ V+++G+CA GG + + D+ +PVD + GCPP +I +L
Sbjct: 80 KIVVAVGACALSGGIFKEG-HIYGPVDKFIPVDAKIVGCPPRPSEIIEAVLK 130
>gi|288560655|ref|YP_003424141.1| energy-converting hydrogenase A subunit N EhaN [Methanobrevibacter
ruminantium M1]
gi|288543365|gb|ADC47249.1| energy-converting hydrogenase A subunit N EhaN [Methanobrevibacter
ruminantium M1]
Length = 153
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 4/134 (2%)
Query: 43 VDQLVTWARTGSLMW-MTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ +L R S+ + C C VE++ PRYDLE++G +PR++DV++V
Sbjct: 2 LKKLKDIVRKSSIHVCIVNCGGCNGCDVELVALLSPRYDLEQYGIYVHNNPREADVLLVT 61
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPG 158
G +T + LRR+Y + PEP+ V+++G+C G + V+ +PVD +PG
Sbjct: 62 GAVTEQWRDNLRRIYAKAPEPKIVVAVGNCPQSGDVFAQEGGRVLAPVSDFIPVDAAIPG 121
Query: 159 CPPTAEALIYGILL 172
CPP ++ +L
Sbjct: 122 CPPRPSEILEAVLT 135
>gi|253699704|ref|YP_003020893.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21]
gi|251774554|gb|ACT17135.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21]
Length = 252
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 38/106 (35%), Positives = 57/106 (53%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + S +D+ RFG ASPR +D + V G +T M AL Y+ +P P
Sbjct: 135 GCNACEADTNVLSTIGWDIGRFGIQFVASPRHADGLWVTGPVTEHMREALLMTYEAIPAP 194
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
+ V++ G+CA GG + S G + ++PVD+Y+PGCPP +
Sbjct: 195 KLVVACGACAISGGPFRGSPEAHDGVEGMLPVDLYIPGCPPHPVTI 240
>gi|77554378|gb|ABA97174.1| NAD, putative [Oryza sativa Japonica Group]
Length = 141
Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats.
Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
MA +L R+Y+QMPEP+YVI+MG+C GG + SYS VRG D+++PVD+Y+P CPP E
Sbjct: 1 MAPSLVRLYEQMPEPKYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPSCPPKPE 60
Query: 165 ALIYGILLLQKKIRRV 180
A+I + L+KKI R
Sbjct: 61 AVIDALTKLRKKISRE 76
>gi|212704287|ref|ZP_03312415.1| hypothetical protein DESPIG_02342 [Desulfovibrio piger ATCC 29098]
gi|212672249|gb|EEB32732.1| hypothetical protein DESPIG_02342 [Desulfovibrio piger ATCC 29098]
Length = 149
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
Query: 42 SVDQLVTWARTGSLMWMTFG---LACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMI 97
S+D ++ S C VE+ + PRYD+ER G SPR +D+++
Sbjct: 2 SLDNMLKKLSVRSPWLFRINAGSCNGCDVELATTACIPRYDVERLGCRYCGSPRHADIVL 61
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+ G LT ++ + V++++PEP+ +++G C GG + YS+ R +PVD+ VP
Sbjct: 62 ITGPLTTRVRDRVLAVWNEIPEPKITVAVGICPISGGVFREGYSIEGPISRYIPVDVNVP 121
Query: 158 GCPPTAEALIYGILLLQKK 176
GCPP +A++ G++L +K
Sbjct: 122 GCPPRPQAILEGVVLARKM 140
>gi|251772759|gb|EES53321.1| putative hydrogenase-3 subunit (HycG) [Leptospirillum
ferrodiazotrophum]
Length = 163
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 40/112 (35%), Positives = 61/112 (54%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P L GF+ ASPR +D+++V G ++ M AL + MP P
Sbjct: 43 SCNGCELELWALENPVTSLSSLGFSFVASPRHADILLVTGPVSCHMKEALETTHQAMPAP 102
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
+ V+++G CA GG + SY+ G I+P D+ V GCPP EA++ G+L
Sbjct: 103 KRVLAVGDCAISGGVFRGSYATHDGLSSILPPDVTVHGCPPPPEAIVEGVLR 154
>gi|226327309|ref|ZP_03802827.1| hypothetical protein PROPEN_01176 [Proteus penneri ATCC 35198]
gi|225204527|gb|EEG86881.1| hypothetical protein PROPEN_01176 [Proteus penneri ATCC 35198]
Length = 172
Score = 127 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Query: 46 LVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
L R+ + + G C +E+ A P +D ERFG ASPR +D+++ G +T
Sbjct: 30 LKDIQRSAYVYRVDCGGCNGCEIEIFSAITPVFDAERFGIKVVASPRHADILLFTGAVTR 89
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+M R Y+ P+P+ IS G+C GGG +H Y V G + IVP+D+++PGCPP
Sbjct: 90 QMRVPALRAYESAPDPKICISYGACGCGGGIFHDLYCVWGGSESIVPIDVWIPGCPP 146
>gi|319957574|ref|YP_004168837.1| NADH ubiquinone oxidoreductase 20 kda subunit [Nitratifractor
salsuginis DSM 16511]
gi|319419978|gb|ADV47088.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nitratifractor
salsuginis DSM 16511]
Length = 170
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 65/119 (54%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E S P YDLER G ASPR +D+M+++G LT M + ++Q+PEP
Sbjct: 52 SCNACEAECNALSNPYYDLERLGIHFVASPRHADLMLLSGVLTFNMLPHVLDAWEQIPEP 111
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
++ I++G C + ++++V +PV ++PGCPP+ + +I G+L + +
Sbjct: 112 KWCITLGDCPAMQAPFEHTFAVTAPASEHLPVAHHIPGCPPSPDRIIEGLLEFLENLES 170
>gi|224372780|ref|YP_002607152.1| hydrogenase subunit [Nautilia profundicola AmH]
gi|223589533|gb|ACM93269.1| hydrogenase subunit [Nautilia profundicola AmH]
Length = 166
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E S P YDLER G ASPR +DVM ++G +T M Y+QMP P
Sbjct: 52 SCNACEAECNALSNPYYDLERLGIHFVASPRHADVMFLSGVMTMNMYHHAIDCYNQMPSP 111
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
++VI++G C G + +Y+ ++G D + +D ++PGCPP+ + +I G+L K
Sbjct: 112 KWVIAIGECVKDMGVFEKTYA-IKGND--LKIDYFIPGCPPSPKDIIKGLLKFLK 163
>gi|119188401|ref|XP_001244807.1| hypothetical protein CIMG_04248 [Coccidioides immitis RS]
Length = 84
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 63/79 (79%), Positives = 70/79 (88%)
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
MA ALR+VYDQMP+PR+VISMGSCANGGGYYHYSYSV RGCDRIVPVDIYVPGCPPT+EA
Sbjct: 1 MAPALRQVYDQMPDPRWVISMGSCANGGGYYHYSYSVTRGCDRIVPVDIYVPGCPPTSEA 60
Query: 166 LIYGILLLQKKIRRVGNVK 184
L+YGI LQKK+R +
Sbjct: 61 LMYGIFQLQKKMRHTQITR 79
>gi|212704381|ref|ZP_03312509.1| hypothetical protein DESPIG_02436 [Desulfovibrio piger ATCC 29098]
gi|212672102|gb|EEB32585.1| hypothetical protein DESPIG_02436 [Desulfovibrio piger ATCC 29098]
Length = 265
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 61/114 (53%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + YDL +FG ASPR +D ++V G ++ M A+ + +PEP
Sbjct: 146 GCNACEADTNVLGTLVYDLGKFGINFVASPRHADGILVTGPVSRNMREAVLATWAAVPEP 205
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
R I++GSCA GG + S G + V ++VPGCPP+ +++ G+L L+
Sbjct: 206 RIAIAVGSCAISGGLFADSDECCGGLPPLCDVQLFVPGCPPSPWSILDGLLRLK 259
>gi|317485983|ref|ZP_07944838.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6]
gi|316922756|gb|EFV43987.1| NADH ubiquinone oxidoreductase [Bilophila wadsworthia 3_1_6]
Length = 144
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/125 (33%), Positives = 70/125 (56%), Gaps = 4/125 (3%)
Query: 52 TGSLMWMTFG---LACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
T S C VE+ + RYD+ER G SPR +D++++ G LT ++
Sbjct: 9 TRSPWLFRINAGSCNGCDVELATTACISRYDVERLGCKYCGSPRHADIVLITGPLTARVK 68
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
+ RV++++PEP+ +++G C GG + YS+ DR +P+D+ VPGCPP +A++
Sbjct: 69 DKVLRVWNEIPEPKVTVAVGICPISGGVFREGYSIEGPVDRYLPIDVNVPGCPPRPQAIM 128
Query: 168 YGILL 172
G+L
Sbjct: 129 EGVLE 133
>gi|240169554|ref|ZP_04748213.1| oxidoreductase [Mycobacterium kansasii ATCC 12478]
Length = 159
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 63/116 (54%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C VE+ A P YD ERFG ASPR +D ++V G +T MA LR P P
Sbjct: 44 SCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMAQPLRNTLAATPAP 103
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
R VI+ G CA G + +Y VV ++PVD+ +PGCPP+ + ++ + + ++
Sbjct: 104 RLVIACGDCALNRGVFGDAYGVVGSVGEVIPVDVEIPGCPPSPDQVVMALRSVTRR 159
>gi|297620123|ref|YP_003708228.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
A3]
gi|297379100|gb|ADI37255.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
A3]
Length = 153
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 80/145 (55%), Gaps = 11/145 (7%)
Query: 46 LVTWARTGSL-MWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ +AR S+ + + C C +E++ A PRYD+E++G +PR++DV++V G +
Sbjct: 2 IKDFARKRSINVCIVNTGGCNGCDIEVVSALAPRYDIEQYGIYVHNNPREADVLVVTGPV 61
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
L+ ++D+ PEP+ V+++G+CA G + V D+I+PV+ +PGCPP
Sbjct: 62 VLPWKKRLKEIFDKTPEPKVVVAVGACALSCGIFKEG-HVYGPVDKIIPVNAKLPGCPPR 120
Query: 163 AEALIYGI-------LLLQKKIRRV 180
+I + L +++K+ +
Sbjct: 121 PSEIIEAVVSIAPEALAMKEKMLKE 145
>gi|224099657|ref|XP_002334455.1| predicted protein [Populus trichocarpa]
gi|222872368|gb|EEF09499.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/97 (43%), Positives = 65/97 (67%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
+ T+ + L W+R SL + +G +CC +E R+D +R+G PR+SPRQ+D++
Sbjct: 1 SVISTTSNDLSNWSRLSSLWPLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLI 60
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
+ AGT+T KMA +L R+Y+QMPE +YVI+MG+C G
Sbjct: 61 LTAGTVTMKMAPSLVRLYEQMPEQKYVIAMGACTITG 97
>gi|78221590|ref|YP_383337.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
metallireducens GS-15]
gi|78192845|gb|ABB30612.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
metallireducens GS-15]
Length = 262
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 66/119 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C + S +DL RFG ASPR +D + + G +T M AL + ++ +PEP
Sbjct: 144 GCNACEADTNVLSTVGFDLGRFGIQFVASPRHADGIFITGPVTENMHLALLKTWEAIPEP 203
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+ I+ G+CA GG + S V G D ++P+D+Y+PGCPP ++ G+L + ++
Sbjct: 204 KIAIAAGACAINGGPFIDSPDVHNGADGLIPIDLYIPGCPPHPLTILDGLLRILGRLEE 262
>gi|326471804|gb|EGD95813.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Trichophyton
tonsurans CBS 112818]
Length = 204
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 66/131 (50%), Positives = 85/131 (64%), Gaps = 4/131 (3%)
Query: 4 TTVNQKIISGQSSCSL---EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
TTV ++ + L E+++ E T ++T DQ+ WAR GSL +TF
Sbjct: 44 TTVGRQTNETSPTAMLSRPERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTF 103
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACC VEMM SMPRYDL+R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P
Sbjct: 104 GLACCGVEMMAVSMPRYDLDRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDP 163
Query: 121 RYVISMG-SCA 130
++V S G CA
Sbjct: 164 KWVTSCGRVCA 174
>gi|326484679|gb|EGE08689.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Trichophyton equinum
CBS 127.97]
Length = 204
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 66/131 (50%), Positives = 85/131 (64%), Gaps = 4/131 (3%)
Query: 4 TTVNQKIISGQSSCSL---EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
TTV ++ + L E+++ E T ++T DQ+ WAR GSL +TF
Sbjct: 44 TTVGRQTNETSPTAMLARPERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTF 103
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
GLACC VEMM SMPRYDL+R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P
Sbjct: 104 GLACCGVEMMAVSMPRYDLDRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDP 163
Query: 121 RYVISMG-SCA 130
++V S G CA
Sbjct: 164 KWVTSCGRVCA 174
>gi|120602015|ref|YP_966415.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio
vulgaris DP4]
gi|120562244|gb|ABM27988.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Desulfovibrio
vulgaris DP4]
Length = 144
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 53 GSLMWMTFG---LACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S C VE+ + PRYD+ER G SPR +D++++ G LT ++
Sbjct: 10 RSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKD 69
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
+ RV+D++P P+ +++G C GG + Y + DR +P+DI VPGCPP +A+I
Sbjct: 70 KVLRVWDEIPAPKITVAVGICPVSGGVFRDGYPIEGPLDRYIPIDINVPGCPPRPQAIIE 129
Query: 169 GILLLQK 175
G++ +
Sbjct: 130 GVVKARD 136
>gi|289192361|ref|YP_003458302.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
sp. FS406-22]
gi|288938811|gb|ADC69566.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
sp. FS406-22]
Length = 148
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 76/143 (53%), Gaps = 11/143 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
L AR + M + C A ++ P YD E++ +PR++D+++V G
Sbjct: 2 LKKIARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGC 61
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
+T +A +LR++Y+++PEP+ V+++G+CA GG Y S V + I+PVD+
Sbjct: 62 VTKVVAESLRKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDV 121
Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
VPGC P E +I GI K+
Sbjct: 122 KVPGCAPRPEDIIAGIAKAISKV 144
>gi|46580693|ref|YP_011501.1| hydrogenase subunit CooL [Desulfovibrio vulgaris str.
Hildenborough]
gi|46450112|gb|AAS96761.1| hydrogenase, CooL subunit, putative [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234412|gb|ADP87266.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
vulgaris RCH1]
Length = 144
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 4/127 (3%)
Query: 53 GSLMWMTFG---LACCAVEMMQASM-PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
S C VE+ + PRYD+ER G SPR +D++++ G LT ++
Sbjct: 10 RSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCKYCGSPRHADIVLITGPLTARVKD 69
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
+ RV+D++P P+ +++G C GG + Y + DR +P+DI VPGCPP +A+I
Sbjct: 70 KVLRVWDEIPAPKITVAVGICPVSGGVFRDGYPIEGPLDRYIPIDINVPGCPPRPQAIIE 129
Query: 169 GILLLQK 175
G++ +
Sbjct: 130 GVVKARD 136
>gi|119718689|ref|YP_925654.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Nocardioides sp.
JS614]
gi|119539350|gb|ABL83967.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Nocardioides sp.
JS614]
Length = 162
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 42/112 (37%), Positives = 59/112 (52%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ A P YD ER+G ASPR +DV++V G +T+ M LRR + P P
Sbjct: 47 SCNGCEIEVGGAFGPVYDAERYGARLVASPRHADVVLVTGVVTHNMLEPLRRTVEATPRP 106
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
R V+++G CA G + Y V V VD+ VPGCPP A++ +
Sbjct: 107 RLVLAVGDCARNCGAFKGGYGVAGAVHDAVDVDLEVPGCPPEPAAIVDALRR 158
>gi|15669553|ref|NP_248366.1| formate hydrogenlyase subunit 7 [Methanocaldococcus jannaschii DSM
2661]
gi|41018429|sp|Q58758|Y1363_METJA RecName: Full=Uncharacterized protein MJ1363
gi|1592007|gb|AAB99371.1| formate hydrogenlyase, subunit 7 [Methanocaldococcus jannaschii DSM
2661]
Length = 151
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 11/143 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
+ AR + M + C A ++ P YD E++ +PR++D+++V G
Sbjct: 5 IKKIARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGC 64
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
+T +A +LR++Y+++PEP+ V+++G+CA GG Y S V + I+PVD+
Sbjct: 65 VTKVVAESLRKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDV 124
Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
VPGC P E +I GI+ K+
Sbjct: 125 KVPGCAPRPEDIIAGIVKALPKV 147
>gi|159905433|ref|YP_001549095.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
maripaludis C6]
gi|159886926|gb|ABX01863.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
maripaludis C6]
Length = 147
Score = 123 bits (310), Expect = 8e-27, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 11/143 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
L +R ++ M + C ++ P YD E++ +PR++DV++V G
Sbjct: 2 LKELSRKKNIHIMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
+T ++++L+++YD++PEP+ VI+ G+CA GG Y+ S V + I+PVD+
Sbjct: 62 VTKAVSASLKKIYDEIPEPKAVIAAGACALMGGVYNNIGGDLGTSTFVDGPVENIIPVDM 121
Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
VPGCPP E +I GI+ KI
Sbjct: 122 KVPGCPPRPEDIITGIVKALPKI 144
>gi|296532565|ref|ZP_06895272.1| NADH-quinone oxidoreductase subunit B [Roseomonas cervicalis ATCC
49957]
gi|296267104|gb|EFH13022.1| NADH-quinone oxidoreductase subunit B [Roseomonas cervicalis ATCC
49957]
Length = 167
Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats.
Identities = 44/115 (38%), Positives = 69/115 (60%), Gaps = 1/115 (0%)
Query: 50 ARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
R+ +++ + G CA+E+ +DLERFG ASPR +DV++V+G +T M
Sbjct: 6 GRSLAILPVQAGGCQGCALEIAALRGVVHDLERFGLRFVASPRHADVLLVSGPMTRTMTE 65
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
A +R + M EP +V+++G CA GGG + +Y+V G +PVD+ +PGCPP
Sbjct: 66 AAQRAHACMAEPGWVVAVGDCALGGGVFAGAYAVEEGVGAALPVDLVIPGCPPGP 120
>gi|326483737|gb|EGE07747.1| NADH dehydrogenase beta subunit [Trichophyton equinum CBS 127.97]
Length = 147
Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats.
Identities = 62/112 (55%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
E+++ E T ++T DQ+ WAR GSL +TFGLACC VEMM SMPRYDL
Sbjct: 6 ERLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPRYDL 65
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG-SCA 130
+R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P++V S G CA
Sbjct: 66 DRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVTSCGRVCA 117
>gi|148642373|ref|YP_001272886.1| [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone
oxidoreductase (complex I), subunit PSST/NdhK/NuoB
[Methanobrevibacter smithii ATCC 35061]
gi|222444424|ref|ZP_03606939.1| hypothetical protein METSMIALI_00035 [Methanobrevibacter smithii
DSM 2375]
gi|261351026|ref|ZP_05976443.1| carbon monoxide-induced hydrogenase, CooL subunit
[Methanobrevibacter smithii DSM 2374]
gi|148551390|gb|ABQ86518.1| [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone
oxidoreductase (complex I), subunit PSST/NdhK/NuoB
[Methanobrevibacter smithii ATCC 35061]
gi|222433989|gb|EEE41154.1| hypothetical protein METSMIALI_00035 [Methanobrevibacter smithii
DSM 2375]
gi|288860366|gb|EFC92664.1| carbon monoxide-induced hydrogenase, CooL subunit
[Methanobrevibacter smithii DSM 2374]
Length = 149
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 43 VDQLVTWARTGSLMW-MTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
++ + R S+ + C C VE++ + PRYDLE++G +PR++DV+++
Sbjct: 2 LNAIKDVVRKSSIHVCIVNCGGCNGCDVELVALTSPRYDLEQYGIYVHNNPREADVLLLT 61
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPG 158
G +T + L+RVYD+ PEP+ V+++G+C G + V +PVD +PG
Sbjct: 62 GAVTEQWVDNLKRVYDKAPEPKIVVAVGNCPQSGDVFNQEGGKVYAPASDFIPVDAEIPG 121
Query: 159 CPPTAEALIYGIL 171
CPP ++ IL
Sbjct: 122 CPPRPSEILEAIL 134
>gi|182414283|ref|YP_001819349.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
PB90-1]
gi|177841497|gb|ACB75749.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
PB90-1]
Length = 285
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 49 WARTGSLMWMTFGLACCA-VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ R+ L ++ G + ++ +DL RFG ASPR +D ++V G ++ M
Sbjct: 150 FGRSLRLRQVSAGGSGAEEADLNVLGTIGWDLGRFGIQFVASPRHADGLVVTGPVSKGME 209
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
ALR+ ++ MP P+ VI++G+ A GG + V G D IVPVD+Y+PG PP +
Sbjct: 210 LALRKTWEAMPAPKIVIAVGAEAISGGVFAGHPQVRNGVDAIVPVDLYIPGWPPHPLTI 268
>gi|258541876|ref|YP_003187309.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256632954|dbj|BAH98929.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256636011|dbj|BAI01980.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
pasteurianus IFO 3283-03]
gi|256639066|dbj|BAI05028.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
pasteurianus IFO 3283-07]
gi|256642120|dbj|BAI08075.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
pasteurianus IFO 3283-22]
gi|256645175|dbj|BAI11123.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
pasteurianus IFO 3283-26]
gi|256648230|dbj|BAI14171.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
pasteurianus IFO 3283-32]
gi|256651283|dbj|BAI17217.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654274|dbj|BAI20201.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Acetobacter
pasteurianus IFO 3283-12]
Length = 165
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 6/127 (4%)
Query: 56 MWMTF------GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
+ G C +E+ YD+E GF SPR +DV+++ G LT MA
Sbjct: 26 WPLLLFHVDTGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAPV 85
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
L + MP P+ +I++GSCA GG + +Y+V+ G +R V +D+ +PGCPP + ++ G
Sbjct: 86 LEAAWQAMPTPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLNG 145
Query: 170 ILLLQKK 176
+ L K
Sbjct: 146 LCSLFGK 152
>gi|327304110|ref|XP_003236747.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton rubrum CBS
118892]
gi|326462089|gb|EGD87542.1| NADH-ubiquinone oxidoreductase subunit B [Trichophyton rubrum CBS
118892]
Length = 182
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 58/105 (55%), Positives = 75/105 (71%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
++++ E T ++T DQ+ WAR GSL +TFGLACC VEMM SMPRYDL
Sbjct: 63 KRLEVPLPSQGEEPTPLRHILTKFDQVANWARQGSLWPLTFGLACCGVEMMAVSMPRYDL 122
Query: 80 ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
+R G RASPRQ+DV+IV+GT+TNKM ALR +YDQMP+P++VI
Sbjct: 123 DRMGIIYRASPRQADVLIVSGTVTNKMGPALRLLYDQMPDPKWVI 167
>gi|134046813|ref|YP_001098298.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus
maripaludis C5]
gi|132664438|gb|ABO36084.1| membrane-bound hydrogenase subunit ehbM [Methanococcus maripaludis
C5]
Length = 147
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 79/143 (55%), Gaps = 11/143 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
L +R ++ M + C ++ P YD E++ +PR++DV++V G
Sbjct: 2 LKELSRKKNIHIMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
+T ++++L+++YD++PEP+ VI+ G+CA GG Y+ S + + I+PVD+
Sbjct: 62 VTKAVSASLKKIYDEIPEPKAVIAAGACALMGGVYNNIGGDLGTSTFIDGPVENIIPVDM 121
Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
VPGCPP E +I GI+ KI
Sbjct: 122 KVPGCPPRPEDIISGIVKALPKI 144
>gi|329114352|ref|ZP_08243114.1| Formate hydrogenlyase subunit 7 [Acetobacter pomorum DM001]
gi|326696428|gb|EGE48107.1| Formate hydrogenlyase subunit 7 [Acetobacter pomorum DM001]
Length = 165
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 6/127 (4%)
Query: 56 MWMTF------GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
+ G C +E+ YD+E GF SPR +DV+++ G LT MA
Sbjct: 26 WPLLLFHVDTGGCGGCGMELQALRYAPYDMEGAGFGFVTSPRNADVLLITGALTRAMAPV 85
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
L + MP P+ +I++GSCA GG + +Y+V+ G +R V +D+ +PGCPP + ++ G
Sbjct: 86 LEAAWQAMPTPKGLIAVGSCALDGGMFPENYTVLGGLERRVSIDLKIPGCPPAPQDVLNG 145
Query: 170 ILLLQKK 176
+ L K
Sbjct: 146 LCSLFGK 152
>gi|162453072|ref|YP_001615439.1| NAD-dependent dehydrogenase subunit [Sorangium cellulosum 'So ce
56']
gi|161163654|emb|CAN94959.1| NAD-dependent dehydrogenase subunit [Sorangium cellulosum 'So ce
56']
Length = 250
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 3/165 (1%)
Query: 11 ISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEM 69
+ + + R E + + +L + R+ + ++ G C +E+
Sbjct: 85 FTPEPRMGGNEPSDLTVREGEEEIVRVRASAAFSRL--FGRSLKMRQVSAGGCNACELEL 142
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
+ +D++RFG ASPR +D +++ G LT M A++ +D MP+PR+++++G+C
Sbjct: 143 NAVTNVNFDVQRFGIEWVASPRHADALVLTGPLTRNMKEAVQLAWDAMPDPRFIVAVGAC 202
Query: 130 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
A GG Y + V RG V +YVPGCPP + +L L
Sbjct: 203 AISGGLYDGAAGVDRGFLERVGPSLYVPGCPPHPLTFVNAVLDLL 247
>gi|150399680|ref|YP_001323447.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
vannielii SB]
gi|150012383|gb|ABR54835.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
vannielii SB]
Length = 147
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 11/143 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
L +R ++ M + C ++ P YD E++ +PR++D+++V G
Sbjct: 2 LKELSRKKNIHIMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADILVVTGC 61
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
+T + +L+++Y+++P P+ V+S+G+CA GG Y+ S V ++I+PVD+
Sbjct: 62 VTKSVTKSLKKIYEEIPNPKAVVSVGACALMGGVYNNIGADLGTSTFVDGPVEKIIPVDV 121
Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
VPGCPP E +I GI+ KI
Sbjct: 122 KVPGCPPRPEDVITGIVKALPKI 144
>gi|332295482|ref|YP_004437405.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
narugense DSM 14796]
gi|332178585|gb|AEE14274.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
narugense DSM 14796]
Length = 140
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 46 LVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTL 102
+ R+ S C +E++ RYD+ER G SP+ +D+ +V G +
Sbjct: 2 IFKIGRSKSPWIFHLNTGSCNGCDIEIVALFASRYDVERLGCKLVGSPKHADICLVTGPV 61
Query: 103 TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
T + L ++YD +P P+ ++ +G+C+ G + YS+V +++PV YV GC
Sbjct: 62 TARSKEPLLKIYDMLPNPKVIVCVGACSISSGVFTDGYSIVGPAHKLIPVTAYVGGCSAH 121
Query: 163 AEALIYGILLLQK 175
+ + G+ +
Sbjct: 122 PKNIFLGLKKAIE 134
>gi|261403244|ref|YP_003247468.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
vulcanius M7]
gi|261370237|gb|ACX72986.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
vulcanius M7]
Length = 148
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 77/143 (53%), Gaps = 11/143 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
L AR + M + C A ++ P YD E++ +PR++D++IV G
Sbjct: 2 LKKIARKKCIHAMLVYTGGCNACDIEVVNAVFSPYYDAEQYNVFLTFNPREADILIVTGC 61
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
+T +A +LR++Y+++PEP+ VI++G+CA GG Y S + + I+PVD+
Sbjct: 62 VTKVVAESLRQIYEKIPEPKAVIAVGACALMGGVYKNIGGDLGTSEFIAGPVENIIPVDV 121
Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
VPGC P E +I GI+ K+
Sbjct: 122 KVPGCAPRPEDIISGIVKAIPKV 144
>gi|148260403|ref|YP_001234530.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
cryptum JF-5]
gi|146402084|gb|ABQ30611.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
cryptum JF-5]
Length = 167
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/105 (39%), Positives = 62/105 (59%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E++ YDLERFG ASPR +DV++V G +T M++A R Y+ MP P
Sbjct: 53 SCNGCELEIIALGNVLYDLERFGLKLVASPRHADVLLVTGPMTRNMSAATRLAYEAMPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
++V+++G C GG + S + G ++PV + +PGCPPT A
Sbjct: 113 KFVVAVGDCGRDGGVFAASPHCLGGTASVLPVTLTIPGCPPTPAA 157
>gi|45359185|ref|NP_988742.1| energy conserving hydrogenase B small subunit [Methanococcus
maripaludis S2]
gi|45048060|emb|CAF31178.1| energy conserving hydrogenase B small subunit [Methanococcus
maripaludis S2]
Length = 147
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 79/143 (55%), Gaps = 11/143 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
L +R ++ M + C ++ P YD E++ +PR++DV++V G
Sbjct: 2 LKELSRKKNIHVMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
+T ++++L+++YD++PEP+ V++ G+CA GG Y+ S + + I+PVD+
Sbjct: 62 VTKAVSASLKKIYDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDV 121
Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
VPGCPP E +I GI+ KI
Sbjct: 122 KVPGCPPRPEDVITGIVKALPKI 144
>gi|162149080|ref|YP_001603541.1| NADH-quinone oxidoreductase subunit B [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787657|emb|CAP57253.1| putative NADH-quinone oxidoreductase chain B [Gluconacetobacter
diazotrophicus PAl 5]
Length = 166
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 68/116 (58%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G CA+E+ Y L G A A+PR ++V++V G LT MA L + MPEP
Sbjct: 34 GCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRAMAPVLEAAWHAMPEP 93
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
R ++++G+CA GG + +Y+V+ G + +D+ VPGCPP+ A++ G+ + ++
Sbjct: 94 RALVAVGACAIDGGPFPENYAVLGGLEGRATLDVTVPGCPPSPAAILAGLARVLER 149
>gi|256810104|ref|YP_003127473.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
fervens AG86]
gi|256793304|gb|ACV23973.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
fervens AG86]
Length = 147
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 76/139 (54%), Gaps = 11/139 (7%)
Query: 50 ARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
AR + M + C A ++ P YD E++ +PR++D+++V G +T
Sbjct: 6 ARKKCIHVMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKT 65
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPG 158
+A +L+++Y+++PEP+ V+++G+CA GG Y S V + I+PVD+ VPG
Sbjct: 66 VAESLKKIYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPG 125
Query: 159 CPPTAEALIYGILLLQKKI 177
C P E +I GI+ K+
Sbjct: 126 CAPRPEDIITGIIRALPKV 144
>gi|150402793|ref|YP_001330087.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
maripaludis C7]
gi|150033823|gb|ABR65936.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
maripaludis C7]
Length = 147
Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 78/143 (54%), Gaps = 11/143 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
L +R ++ M + C ++ P YD E++ +PR++DV++V G
Sbjct: 2 LKELSRKKNIHVMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS-------VVRGCDRIVPVDI 154
+T ++++L+++YD++PEP+ V++ G+CA GG Y + + + I+PVD+
Sbjct: 62 VTKAVSASLKKIYDEIPEPKAVVAAGACALMGGVYKNIGADLGTSSFIDGPVENIIPVDV 121
Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
VPGCPP E +I GI+ KI
Sbjct: 122 KVPGCPPRPEDVITGIVKALPKI 144
>gi|2665481|gb|AAB88386.1| formate hydrogenlyase subunit 7 [Methanococcus maripaludis]
Length = 147
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 79/143 (55%), Gaps = 11/143 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
L +R ++ M + C ++ P YD E++ +PR++DV++V G
Sbjct: 2 LKELSRKKNIHVMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGC 61
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
+T ++++L+++YD++PEP+ V++ G+CA GG Y+ S + + I+PVDI
Sbjct: 62 VTKAVSASLKKIYDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDI 121
Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
VPGCPP E +I GI+ KI
Sbjct: 122 KVPGCPPRPEDVITGIVKALPKI 144
>gi|326403595|ref|YP_004283677.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
AIU301]
gi|325050457|dbj|BAJ80795.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
AIU301]
Length = 167
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 40/105 (38%), Positives = 61/105 (58%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E++ YDLERFG ASPR +DV++ G +T M++A R Y+ MP P
Sbjct: 53 SCNGCELEIIALGNVLYDLERFGLKLVASPRHADVLLATGPMTRNMSAATRLAYEAMPAP 112
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
++V+++G C GG + S + G ++PV + +PGCPPT A
Sbjct: 113 KFVVAVGDCGRDGGVFAASPHCLGGTASVLPVTLTIPGCPPTPAA 157
>gi|197116467|ref|YP_002136894.1| iron-sulfur cluster-binding domain-containing hydrogenase subunit
[Geobacter bemidjiensis Bem]
gi|197085827|gb|ACH37098.1| hydrogenase subunit, iron-sulfur cluster-binding domain-containing
protein [Geobacter bemidjiensis Bem]
Length = 332
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Query: 61 GLACCAVEMMQASMPR-YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
C VE+ + +D+E+ G P ++D++++ G LT + + R+Y + PE
Sbjct: 22 SCNGCDVELAVTAAVDEFDVEQLGCRYTEEPHEADILLITGPLTVRARNEALRLYAEAPE 81
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ +++G C GG + SY+V R +PVD+ VPGCPP +AL+ GI +
Sbjct: 82 TKVTVAVGVCPVSGGVFRDSYAVDGPVQRYLPVDLNVPGCPPRPQALLAGIAQARD 137
>gi|307721952|ref|YP_003893092.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurimonas
autotrophica DSM 16294]
gi|306980045|gb|ADN10080.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurimonas
autotrophica DSM 16294]
Length = 168
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 65/117 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E S P YDLER G ASPR +DVM+++G +T M + Y+Q+P+P
Sbjct: 52 SCNACEAECNALSNPYYDLERLGIYFVASPRHADVMLLSGLMTFNMTPHVLEAYEQIPKP 111
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
++VI++G C + ++++ ++ + + ++ GCPP+ ++ G+L KKI
Sbjct: 112 KWVITLGDCPVMAAPFEKTFAIKAPANKHLKITHHITGCPPSPREIMQGLLEFLKKI 168
>gi|209545176|ref|YP_002277405.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532853|gb|ACI52790.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter
diazotrophicus PAl 5]
Length = 166
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 41/116 (35%), Positives = 68/116 (58%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G CA+E+ Y L G A A+PR ++V++V G LT MA L + MPEP
Sbjct: 34 GCEGCAMEVAALDGAAYGLPATGIAFVATPRLAEVLLVTGPLTRAMAPVLEAAWHAMPEP 93
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
R ++++G+CA GG + +Y+V+ G + +D+ VPGCPP+ A++ G+ + ++
Sbjct: 94 RALVAVGACAIDGGPFPENYAVLGGLEGRATLDMTVPGCPPSPAAILAGLARVLER 149
>gi|296109474|ref|YP_003616423.1| hypothetical protein Metin_0794 [Methanocaldococcus infernus ME]
gi|295434288|gb|ADG13459.1| hypothetical protein Metin_0794 [Methanocaldococcus infernus ME]
Length = 154
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 11/138 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
+ +R + M + C ++ P YD E++ +PR++D++IV+G
Sbjct: 9 MKKISRKKCIHVMLVYTGGCNGCDIEAVNAVFSPYYDAEQYNVFLTFNPRETDILIVSGC 68
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
+T + +LR++Y+++PEP+ V+++GSCA GG Y S V + I+PVD+
Sbjct: 69 VTKFVKESLRKIYEKIPEPKAVVAIGSCALTGGVYKNIGGDLGTSDFVAGPVENIIPVDV 128
Query: 155 YVPGCPPTAEALIYGILL 172
VPGC P E +I GI+
Sbjct: 129 KVPGCAPRPEDIISGIVK 146
>gi|221041900|dbj|BAH12627.1| unnamed protein product [Homo sapiens]
Length = 148
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/109 (52%), Positives = 70/109 (64%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V+Q + S + + + + ++V +D LV WAR SL MTFGLAC
Sbjct: 29 GVHQSVAIDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLAC 88
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
CAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 137
>gi|240102115|ref|YP_002958423.1| formate hydrogenlyase II subunit H (Mhy2H) [Thermococcus
gammatolerans EJ3]
gi|239909668|gb|ACS32559.1| formate hydrogenlyase II subunit H (Mhy2H) [Thermococcus
gammatolerans EJ3]
Length = 283
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 67/160 (41%), Gaps = 31/160 (19%)
Query: 51 RTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R SL C +E+ P YD ER G ASPR + M G LT +
Sbjct: 2 RLRSLYVFHLDTGACNGCEIELFDILTPYYDAERLGVRLAASPRHAHAMAATGPLTRQAY 61
Query: 108 SALRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVVR---------------GCDRIV- 150
A + M P+PR ++++G+CA GG ++ Y + R G +V
Sbjct: 62 YAAKEAIKAMPPKPRIIVAIGTCACSGGIFYNGYPIYRRPESGREGQEYPRRGGIFELVQ 121
Query: 151 ----------PVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
PV +Y+PGCPP E ++YG+ L + +
Sbjct: 122 DLRDEGEYVGPV-VYIPGCPPRPEEILYGVALALGLVEKQ 160
>gi|195953675|ref|YP_002121965.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp.
Y04AAS1]
gi|195933287|gb|ACG57987.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp.
Y04AAS1]
Length = 165
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E+ S YD+ERFG ASP+ DV+ + G +T M L P P
Sbjct: 49 SCNACEYELTALSNVFYDIERFGIKFVASPKHVDVLTITGPITRNMYKPLLDAIQNTPNP 108
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRI-VPVDIYVPGCPPTAEALIYGILL 172
+ +I++G C+ GG + +Y +V G I + I + GCPP +I GIL
Sbjct: 109 KVIIAIGDCSIDGGLFKGAYGIVGGLKDINIEPHILIRGCPPHPRDIISGILK 161
>gi|150401781|ref|YP_001325547.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
aeolicus Nankai-3]
gi|150014484|gb|ABR56935.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
aeolicus Nankai-3]
Length = 146
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 11/139 (7%)
Query: 50 ARTGSLMWMT-FGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
AR ++ M + C ++ P YD E++ +PR++D+++V+G +T
Sbjct: 6 ARKKNIHIMVAYTGGCNGCDIDIVNCVLSPFYDAEQYNVFLTWNPREADILLVSGCVTKV 65
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPG 158
M L+ +Y+ +PEP+ V+++G CA GG Y S + I+PVDI VPG
Sbjct: 66 MTEPLKEIYEAIPEPKAVVAVGCCALMGGVYANIGGDLGTSDFIDGPVKNIIPVDINVPG 125
Query: 159 CPPTAEALIYGILLLQKKI 177
C P E +I GI+ KI
Sbjct: 126 CSPRPEDIIQGIVQALPKI 144
>gi|296116642|ref|ZP_06835252.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter
hansenii ATCC 23769]
gi|295976854|gb|EFG83622.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gluconacetobacter
hansenii ATCC 23769]
Length = 148
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/112 (33%), Positives = 62/112 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G A CA+E+ +P D G SPR +D+++VAG +T M L + + MP P
Sbjct: 21 GCAGCAMELAALDVPADDAGCKGICFVRSPRHADILLVAGPVTRAMVPVLEQAWQAMPGP 80
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
R ++++G CA GG + +Y+V+ G V +D+ +PGCPP+ + + I
Sbjct: 81 RALMAIGDCAIDGGMFGENYAVLGGLRGRVHLDLSLPGCPPSPDMIQSAITR 132
>gi|325959025|ref|YP_004290491.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
AL-21]
gi|325330457|gb|ADZ09519.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
AL-21]
Length = 149
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 4/133 (3%)
Query: 43 VDQLVTWARTGSLMW-MTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
++ L R S+ + C C +E++ PRYDLE++G +PR++DV+++
Sbjct: 2 LNGLKDIIRKSSIHVCLVNTGGCNGCDIEVVALLSPRYDLEQYGIYVHNNPREADVLLIT 61
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPG 158
G L + L+++Y + PEP+ V+++G+C G + SV +PVD V G
Sbjct: 62 GALAEQWKDKLQKIYAKTPEPKVVVAIGNCPLTGDVFNQEGSSVNAPVSDYIPVDAEVSG 121
Query: 159 CPPTAEALIYGIL 171
CPP ++ IL
Sbjct: 122 CPPRPTEILAAIL 134
>gi|303244684|ref|ZP_07331016.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
gi|302484992|gb|EFL47924.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
Length = 148
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 11/139 (7%)
Query: 50 ARTGSLMWMT-FGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
AR + M + C ++ P YD E++ +PR++D+++V+G +T
Sbjct: 6 ARKKCIHIMVAYTGGCNGCDIEVVNCVLSPFYDAEQYNVLLTWNPREADILVVSGCVTKV 65
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDIYVPG 158
M L+++Y+ +PEP+ V+++G CA GG Y S + + I+PVD+ VPG
Sbjct: 66 MTEPLKKIYEAIPEPKAVVAVGCCALMGGVYGNIGGDLGTSDWIDGPVENIIPVDVKVPG 125
Query: 159 CPPTAEALIYGILLLQKKI 177
CPP E +I GI+ K+
Sbjct: 126 CPPRPEDVIQGIVQALPKV 144
>gi|297619767|ref|YP_003707872.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
A3]
gi|297378744|gb|ADI36899.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
A3]
Length = 147
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 11/143 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
L +R + M + C ++ P YD E++ +PR++D+++V G
Sbjct: 2 LKEISRKKCIHVMLVYTGGCNGCDIEVVNCVLSPYYDAEQYNVFLTWNPREADILVVTGC 61
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------SYSVVRGCDRIVPVDI 154
+T + ++L+++Y++MPEP+ V++ G+CA GG Y S + I+PVD+
Sbjct: 62 VTKTITASLKKIYEEMPEPKAVVAAGACALMGGVYGNIGADLGTSDFIDGPVKNIIPVDV 121
Query: 155 YVPGCPPTAEALIYGILLLQKKI 177
VPGCPP E +I GI+ K+
Sbjct: 122 NVPGCPPRPEDVITGIVKAIPKL 144
>gi|89902050|ref|YP_524521.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
ferrireducens T118]
gi|89346787|gb|ABD70990.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
ferrireducens T118]
Length = 254
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 48 TWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
+ R+ L ++ G + C +E+ S +DL R+G ASPR +D ++++G +T M
Sbjct: 123 RFGRSLKLRSVSAGGCSGCEMEINALSNVNFDLGRYGIDIVASPRHADALVLSGPITRNM 182
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEA 165
A AL+ +D +PEP+ VI++G+CA GG + S ++ R D P +YVPGCP
Sbjct: 183 AQALQICWDAIPEPKLVIAVGACAISGGVFADSDALDRQFLDNFKPA-LYVPGCPAHPLT 241
Query: 166 LIYGILLLQ 174
I GI+ L
Sbjct: 242 FISGIMDLL 250
>gi|124515569|gb|EAY57079.1| putative hydrogenase-3 (HycG) [Leptospirillum rubarum]
gi|206601799|gb|EDZ38282.1| Putative NADH ubiquinone oxidoreductase, 20 kDa subunit
[Leptospirillum sp. Group II '5-way CG']
Length = 169
Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 59/115 (51%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ + Y ER G ASPR +D+++V G ++ +M L ++ M P
Sbjct: 45 SCNACELELHAMNGSYYAPERDGIRFVASPRHADLLLVTGPVSCQMEQPLLDTHEAMASP 104
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ V+++G CA GG + S +V G D + P VPGCPP+ ++ + L +
Sbjct: 105 KTVLAVGDCACQGGVFRGSPAVRNGVDGLFPEARKVPGCPPSPSDILRALRGLSR 159
>gi|227830172|ref|YP_002831952.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus L.S.2.15]
gi|227456620|gb|ACP35307.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus L.S.2.15]
Length = 201
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 49 WARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ R+ L + C +E+ S P YD+ RF +PR +D ++V G +T KM
Sbjct: 81 FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165
L++ Y+ MPEP+ VI +G+CA GG VP++ + +PGCPP
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190
Query: 166 LIYGILLLQKK 176
++ ++ ++ K
Sbjct: 191 ILEALMKVKGK 201
>gi|255565794|ref|XP_002523886.1| NADH-ubiquinone oxidoreductase I subunit j, putative [Ricinus
communis]
gi|223536816|gb|EEF38455.1| NADH-ubiquinone oxidoreductase I subunit j, putative [Ricinus
communis]
Length = 188
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
MA +L R+Y+Q+PEP+YVI+MG+C GG + SYS +RG D+++PVD Y+ GCPP E
Sbjct: 1 MAPSLVRLYEQIPEPKYVIAMGACTITGGMFSTDSYSTIRGVDKLIPVDAYLSGCPPKPE 60
Query: 165 ALIYGILLLQKKIRRV 180
A+I I L+KK+ R
Sbjct: 61 AVIDAITKLRKKLSRE 76
>gi|15897890|ref|NP_342495.1| formate hydrogenlyase subunit 7 (hycG) [Sulfolobus solfataricus P2]
gi|227827480|ref|YP_002829260.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus M.14.25]
gi|229578987|ref|YP_002837385.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus Y.G.57.14]
gi|229582260|ref|YP_002840659.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus Y.N.15.51]
gi|229584694|ref|YP_002843196.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus M.16.27]
gi|284173589|ref|ZP_06387558.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
solfataricus 98/2]
gi|13814203|gb|AAK41285.1| Formate hydrogenlyase subunit 7 (hycG) [Sulfolobus solfataricus P2]
gi|227459276|gb|ACP37962.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus M.14.25]
gi|228009701|gb|ACP45463.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus Y.G.57.14]
gi|228012976|gb|ACP48737.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus Y.N.15.51]
gi|228019744|gb|ACP55151.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus M.16.27]
gi|261602599|gb|ACX92202.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
solfataricus 98/2]
Length = 201
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 13/131 (9%)
Query: 49 WARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ R+ L + C +E+ S P YD+ RF +PR +D ++V G +T KM
Sbjct: 81 FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165
L++ Y+ MPEP+ VI +G+CA GG VP++ + +PGCPP
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190
Query: 166 LIYGILLLQKK 176
++ ++ ++ K
Sbjct: 191 ILEALMKVKGK 201
>gi|255021729|ref|ZP_05293769.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
caldus ATCC 51756]
gi|254968869|gb|EET26391.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
caldus ATCC 51756]
Length = 264
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 55/103 (53%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E+ P Y+L R G SPR +D+++V G +T M L ++ MPEP
Sbjct: 136 SCNGCESEIGALDNPFYNLHRLGIFFTPSPRFADLLMVTGPVTAPMHGPLLATWEAMPEP 195
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
R V++ G+CA G Y+ G + ++PVD+++PGCPP
Sbjct: 196 RMVLATGTCAVSGAPMDGGYAGGSGLNALLPVDVWLPGCPPNP 238
>gi|146304195|ref|YP_001191511.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera
sedula DSM 5348]
gi|145702445|gb|ABP95587.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera
sedula DSM 5348]
Length = 203
Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats.
Identities = 41/127 (32%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 47 VTWARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
VT+ R+ L + C +E+ S P+YD+ RFG +P+ +D +++ G L +
Sbjct: 78 VTFKRSFYLYPLDAGSCGGCNLELRLISSPQYDMTRFGIFFTNTPKHADALLIMGNLGKR 137
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
M +RR YD +P P+ VI +G+CA GG V G + D+ VPGCPPT +
Sbjct: 138 MEEVIRRAYDVIPSPKLVILLGTCAISGG--------VTGIPPDIRGDVIVPGCPPTPAS 189
Query: 166 LIYGILL 172
++ ++
Sbjct: 190 ILDALIK 196
>gi|224035581|gb|ACN36866.1| unknown [Zea mays]
Length = 73
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
MPEPR+VISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL+YG+L LQKK
Sbjct: 1 MPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKK 60
Query: 177 IRRVG 181
I R
Sbjct: 61 INRRK 65
>gi|323477271|gb|ADX82509.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus HVE10/4]
Length = 201
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 49 WARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ R+ L + C +E+ S P YD+ RF +PR +D ++V G +T KM
Sbjct: 81 FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165
L++ Y+ MPEP+ VI +G+CA GG VP++ + +PGCPP
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190
Query: 166 LIYGILLLQ 174
++ ++ ++
Sbjct: 191 ILEALMKVK 199
>gi|15679250|ref|NP_276367.1| formate hydrogenlyase, subunit 7 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622351|gb|AAB85728.1| formate hydrogenlyase, subunit 7 [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 148
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
L +++R ++ M + C ++ P+YD E++ +PR++DV+IV G
Sbjct: 3 LKSFSRARAVHAMLVYTGGCNGCDIEIVNAVFSPKYDAEQYKIFLTWNPREADVLIVTGP 62
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS------VVRGCDRIVPVDIY 155
+T + L+ +Y+ +PEP+ VI+ G+CA GG Y + + D+++PVD
Sbjct: 63 VTKQNEEPLKAIYNAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAK 122
Query: 156 VPGCPPTAEALIYGILLLQKKI 177
VPGC E ++ G + K+
Sbjct: 123 VPGCAVRPEDVLAGAVAALPKL 144
>gi|323474538|gb|ADX85144.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus REY15A]
Length = 201
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 49 WARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ R+ L + C +E+ S P YD+ RF +PR +D ++V G +T KM
Sbjct: 81 FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165
L++ Y+ MPEP+ VI +G+CA GG VP++ + +PGCPP
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190
Query: 166 LIYGILLLQ 174
++ ++ ++
Sbjct: 191 ILEALMKVK 199
>gi|325958030|ref|YP_004289496.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
AL-21]
gi|325329462|gb|ADZ08524.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
AL-21]
Length = 148
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 10/136 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
L +++R ++ M + C ++ P+YD E++ +PR++DV++V G
Sbjct: 3 LKSYSRARAVHVMLVYTGGCNGCDIEIVNCVLSPKYDAEQYKVFLTWNPREADVLVVTGP 62
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS------VVRGCDRIVPVDIY 155
+T LR +YD +PEP+ VI+ G+CA GG Y + ++ D I+PVD
Sbjct: 63 VTRHNEKPLREIYDAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEIMGPVDNIIPVDAK 122
Query: 156 VPGCPPTAEALIYGIL 171
VPGC E ++ G++
Sbjct: 123 VPGCAVRPEDVLSGVV 138
>gi|149193854|ref|ZP_01870952.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter
mediatlanticus TB-2]
gi|149135807|gb|EDM24285.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter
mediatlanticus TB-2]
Length = 140
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 61 GLACCAVEMMQ-ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
C VE+ R+DL++ G + +D+ ++ G +T + L+ V +
Sbjct: 16 SCNGCDVEIAASVMSSRFDLQKLGCEYIETSEDADIFMITGPVTARSLPFLKEVIKNHKK 75
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
P VIS+G+C+ G + SY ++ D V VD+ V GCPP +A++ G+ ++R
Sbjct: 76 PYVVISLGTCSVTCGIFRDSYPILGPVDSYVNVDVNVAGCPPRPQAILEGVKTAIDILKR 135
Query: 180 VGN 182
N
Sbjct: 136 KNN 138
>gi|238619636|ref|YP_002914462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus M.16.4]
gi|238380706|gb|ACR41794.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfolobus
islandicus M.16.4]
Length = 201
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 49 WARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ R+ L + C +E+ S P YD+ RF +PR +D ++V G +T KM
Sbjct: 81 FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165
L++ Y+ M EP+ VI +G+CA GG VP++ + +PGCPP
Sbjct: 141 EVLKKAYEAMQEPKVVILLGACAISGGIIGEG----------VPLEAVVEIPGCPPNPFT 190
Query: 166 LIYGILLLQKK 176
++ ++ ++ K
Sbjct: 191 ILEALMKVKGK 201
>gi|284997591|ref|YP_003419358.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Sulfolobus
islandicus L.D.8.5]
gi|284445486|gb|ADB86988.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Sulfolobus
islandicus L.D.8.5]
Length = 201
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 49 WARTGSLMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ R+ L + C +E+ S P YD+ RF +PR +D ++V G +T KM
Sbjct: 81 FKRSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMK 140
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--IYVPGCPPTAEA 165
L++ Y+ MPEP+ VI +G+CA GG VP++ + + GCPP
Sbjct: 141 EVLKKAYEAMPEPKVVILLGACAISGGIIGEG----------VPLEAVVEISGCPPNPFT 190
Query: 166 LIYGILLLQKK 176
++ ++ ++ K
Sbjct: 191 ILEALMKVKGK 201
>gi|304315372|ref|YP_003850519.1| energy-converting hydrogenase B, subunit M [Methanothermobacter
marburgensis str. Marburg]
gi|5734564|emb|CAB52790.1| hydrogenase small subunit [Methanothermobacter thermautotrophicus]
gi|302588831|gb|ADL59206.1| energy-converting hydrogenase B, subunit M [Methanothermobacter
marburgensis str. Marburg]
Length = 148
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
L +++R ++ M + C ++ P+YD E++ +PR++DV+IV G
Sbjct: 3 LKSFSRARAVHAMLVYTGGCNGCDIEIVNAVLSPKYDAEQYKIFLTWNPREADVLIVTGP 62
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS------VVRGCDRIVPVDIY 155
+T + L+ +Y+ +PEP+ VI+ G+CA GG Y + + D+++PVD
Sbjct: 63 VTKQNEGPLKEIYNAIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAK 122
Query: 156 VPGCPPTAEALIYGILLLQKKI 177
VPGC E ++ G + K+
Sbjct: 123 VPGCAVRPEDVLAGAVAALPKL 144
>gi|84490226|ref|YP_448458.1| EhbM [Methanosphaera stadtmanae DSM 3091]
gi|84373545|gb|ABC57815.1| EhbM [Methanosphaera stadtmanae DSM 3091]
Length = 150
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 50 ARTGSLM-WMTFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
AR ++ + + C ++ P++D+E++ +PR++DV++V+G +T
Sbjct: 7 ARKKAIHLMLVYTGGCNGCDIEIVNTVLSPKFDIEQYNVYLTWNPREADVLVVSGPVTYW 66
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS------VVRGCDRIVPVDIYVPGC 159
L ++Y+ +P+P+ V+++G+CA GG Y + + D ++PVD +PGC
Sbjct: 67 TKEPLLKIYEAIPKPKLVVAVGACALTGGVYKNIHGEIPSEEIEGPVDNVIPVDAKIPGC 126
Query: 160 PPTAEALIYGIL 171
E ++ G++
Sbjct: 127 AVRPEDVVAGVV 138
>gi|58038760|ref|YP_190724.1| hypothetical protein GOX0285 [Gluconobacter oxydans 621H]
gi|58001174|gb|AAW60068.1| Hypothetical protein GOX0285 [Gluconobacter oxydans 621H]
Length = 161
Score = 113 bits (284), Expect = 9e-24, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 60/113 (53%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C +E+ + + LE+ GF + P +D +++ G +T A + RV+ MP
Sbjct: 46 GCEGCFMEIESLNGSAFALEQAGFVCVSDPADADWLLLTGAVTRVCAEMVDRVWRAMPPG 105
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
R +I++G+CA GG + Y+ + G + + PV + GCPP+ + ++ + L
Sbjct: 106 RSLIAVGACAVDGGPFPAGYATLGGLEALTPVRRSIAGCPPSPDDILRALQEL 158
>gi|330834667|ref|YP_004409395.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera
cuprina Ar-4]
gi|329566806|gb|AEB94911.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Metallosphaera
cuprina Ar-4]
Length = 203
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/124 (34%), Positives = 68/124 (54%), Gaps = 9/124 (7%)
Query: 49 WARTGSLMWM-TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ R+ + + T C +E S P+YD+ RFG +P+ +D +IV G L+ KM+
Sbjct: 81 FKRSFFVYPIDTGSCGGCNLEFRLISAPQYDMTRFGIFFVNTPKHADALIVMGNLSEKMS 140
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
LR+ YD MPEP+ VI +G+CA GG V G + ++ VPGCPPT +++
Sbjct: 141 KVLRKAYDVMPEPKLVILIGTCAISGG--------VTGIPPDIKGNVIVPGCPPTPSSIL 192
Query: 168 YGIL 171
++
Sbjct: 193 DALI 196
>gi|331694628|ref|YP_004330867.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326949317|gb|AEA23014.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pseudonocardia
dioxanivorans CB1190]
Length = 161
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/112 (38%), Positives = 63/112 (56%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ A P YD ER+G ASPR +D ++V G +T M LRR Y+ + EP
Sbjct: 46 SCNGCELEIGAAFGPVYDAERYGARLVASPRHADALVVTGAVTRNMVEPLRRTYEAVGEP 105
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
+ V+++G CA G + +Y VV +VPVD+ V GCPP E ++ + L
Sbjct: 106 KVVVAVGDCARNCGVFAEAYGVVGAVADVVPVDLEVVGCPPRPETIVAALRL 157
>gi|34536232|dbj|BAC87587.1| unnamed protein product [Homo sapiens]
Length = 155
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 54/98 (55%), Positives = 66/98 (67%)
Query: 16 SCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMP 75
+ + + + + ++V +D LV WAR SL MTFGLACCAVEMM + P
Sbjct: 47 ASTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAP 106
Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
RYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+V
Sbjct: 107 RYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKV 144
>gi|148259651|ref|YP_001233778.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
cryptum JF-5]
gi|146401332|gb|ABQ29859.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
cryptum JF-5]
Length = 164
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ R + G A R +D+++V G T +A A+R+ M P
Sbjct: 35 SCGGCEIEIAACRRLRGGMAAHGIAMVEDLRAADILLVTGVATRNLAEAVRKSLAGMAPP 94
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R+V++ G CA GG + +V+ G ++PVD+ + GCPP ++ G++ L + R
Sbjct: 95 RFVVAAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQILAGLVALVEANARE 154
Query: 181 GN 182
Sbjct: 155 PR 156
>gi|126179131|ref|YP_001047096.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoculleus
marisnigri JR1]
gi|125861925|gb|ABN57114.1| membrane-bound hydrogenase subunit ehaN [Methanoculleus marisnigri
JR1]
Length = 151
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 70/133 (52%), Gaps = 4/133 (3%)
Query: 43 VDQLVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ ++ R+ S+ C +E++ PRYD+E++G +PR++DV++V
Sbjct: 4 LQKIKNTVRSRSIHVSYVDVGSCNGCDIEVLACLAPRYDIEQYGIYVHNNPREADVLLVI 63
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPG 158
G++T + LR ++D++PEP+ +++G+C G Y ++ +P+ VPG
Sbjct: 64 GSVTPQWVDKLRDIWDKIPEPKVAVAIGNCPISGCVYARRGTLTSPPVEKYIPIAAQVPG 123
Query: 159 CPPTAEALIYGIL 171
CPP ++ IL
Sbjct: 124 CPPRPTEILNAIL 136
>gi|331664272|ref|ZP_08365178.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli TA143]
gi|331058203|gb|EGI30184.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli TA143]
Length = 171
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
G +T M S R + P+P+ IS G+C N GG +H Y V G D+IVPVD+Y+PG
Sbjct: 1 TGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPG 60
Query: 159 CPPTAEALIYGILL----LQKKIRRVG 181
CPPT A +YG + L++KI G
Sbjct: 61 CPPTPAATLYGFAMALGLLEQKIHARG 87
>gi|15839463|ref|NP_334500.1| NADH-ubiquinone oxidoreductase, 20 Kd subunit [Mycobacterium
tuberculosis CDC1551]
gi|31791260|ref|NP_853753.1| oxidoreductase [Mycobacterium bovis AF2122/97]
gi|121635995|ref|YP_976218.1| putative oxidoreductase [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148659844|ref|YP_001281367.1| putative oxidoreductase [Mycobacterium tuberculosis H37Ra]
gi|148821274|ref|YP_001286028.1| oxidoreductase [Mycobacterium tuberculosis F11]
gi|167970613|ref|ZP_02552890.1| hypothetical oxidoreductase [Mycobacterium tuberculosis H37Ra]
gi|215406072|ref|ZP_03418253.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
gi|215425279|ref|ZP_03423198.1| oxidoreductase [Mycobacterium tuberculosis T92]
gi|215432997|ref|ZP_03430916.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
gi|215448360|ref|ZP_03435112.1| oxidoreductase [Mycobacterium tuberculosis T85]
gi|218755809|ref|ZP_03534605.1| oxidoreductase [Mycobacterium tuberculosis GM 1503]
gi|219555867|ref|ZP_03534943.1| oxidoreductase [Mycobacterium tuberculosis T17]
gi|224988468|ref|YP_002643155.1| putative oxidoreductase [Mycobacterium bovis BCG str. Tokyo 172]
gi|253797000|ref|YP_003030001.1| oxidoreductase [Mycobacterium tuberculosis KZN 1435]
gi|254233481|ref|ZP_04926807.1| hypothetical protein TBCG_00083 [Mycobacterium tuberculosis C]
gi|254366540|ref|ZP_04982584.1| hypothetical oxidoreductase [Mycobacterium tuberculosis str.
Haarlem]
gi|254549015|ref|ZP_05139462.1| oxidoreductase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|260184939|ref|ZP_05762413.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A]
gi|260199078|ref|ZP_05766569.1| oxidoreductase [Mycobacterium tuberculosis T46]
gi|260203226|ref|ZP_05770717.1| oxidoreductase [Mycobacterium tuberculosis K85]
gi|289441451|ref|ZP_06431195.1| oxidoreductase [Mycobacterium tuberculosis T46]
gi|289445612|ref|ZP_06435356.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A]
gi|289552333|ref|ZP_06441543.1| oxidoreductase [Mycobacterium tuberculosis KZN 605]
gi|289567972|ref|ZP_06448199.1| oxidoreductase [Mycobacterium tuberculosis T17]
gi|289572662|ref|ZP_06452889.1| oxidoreductase [Mycobacterium tuberculosis K85]
gi|289747849|ref|ZP_06507227.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
gi|289748549|ref|ZP_06507927.1| oxidoreductase [Mycobacterium tuberculosis T92]
gi|289756143|ref|ZP_06515521.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
gi|289760181|ref|ZP_06519559.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis T85]
gi|289764198|ref|ZP_06523576.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis GM 1503]
gi|294995700|ref|ZP_06801391.1| oxidoreductase [Mycobacterium tuberculosis 210]
gi|297632555|ref|ZP_06950335.1| oxidoreductase [Mycobacterium tuberculosis KZN 4207]
gi|297729528|ref|ZP_06958646.1| oxidoreductase [Mycobacterium tuberculosis KZN R506]
gi|306778376|ref|ZP_07416713.1| oxidoreductase [Mycobacterium tuberculosis SUMu001]
gi|306778908|ref|ZP_07417245.1| oxidoreductase [Mycobacterium tuberculosis SUMu002]
gi|306782697|ref|ZP_07421019.1| oxidoreductase [Mycobacterium tuberculosis SUMu003]
gi|306787063|ref|ZP_07425385.1| oxidoreductase [Mycobacterium tuberculosis SUMu004]
gi|306791621|ref|ZP_07429923.1| oxidoreductase [Mycobacterium tuberculosis SUMu005]
gi|306795684|ref|ZP_07433986.1| oxidoreductase [Mycobacterium tuberculosis SUMu006]
gi|306801659|ref|ZP_07438327.1| oxidoreductase [Mycobacterium tuberculosis SUMu008]
gi|306970266|ref|ZP_07482927.1| oxidoreductase [Mycobacterium tuberculosis SUMu009]
gi|306974499|ref|ZP_07487160.1| oxidoreductase [Mycobacterium tuberculosis SUMu010]
gi|307082207|ref|ZP_07491377.1| oxidoreductase [Mycobacterium tuberculosis SUMu011]
gi|307082548|ref|ZP_07491661.1| oxidoreductase [Mycobacterium tuberculosis SUMu012]
gi|313656856|ref|ZP_07813736.1| oxidoreductase [Mycobacterium tuberculosis KZN V2475]
gi|13879137|gb|AAK44314.1| NADH-ubiquinone oxidoreductase, 20 Kd subunit [Mycobacterium
tuberculosis CDC1551]
gi|31616845|emb|CAD92947.1| PROBABLE OXIDOREDUCTASE [Mycobacterium bovis AF2122/97]
gi|121491642|emb|CAL70100.1| Probable oxidoreductase [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|124603274|gb|EAY61549.1| hypothetical protein TBCG_00083 [Mycobacterium tuberculosis C]
gi|134152052|gb|EBA44097.1| hypothetical oxidoreductase [Mycobacterium tuberculosis str.
Haarlem]
gi|148503996|gb|ABQ71805.1| putative oxidoreductase [Mycobacterium tuberculosis H37Ra]
gi|148719801|gb|ABR04426.1| hypothetical oxidoreductase [Mycobacterium tuberculosis F11]
gi|224771581|dbj|BAH24387.1| putative oxidoreductase [Mycobacterium bovis BCG str. Tokyo 172]
gi|253318503|gb|ACT23106.1| oxidoreductase [Mycobacterium tuberculosis KZN 1435]
gi|289414370|gb|EFD11610.1| oxidoreductase [Mycobacterium tuberculosis T46]
gi|289418570|gb|EFD15771.1| oxidoreductase [Mycobacterium tuberculosis CPHL_A]
gi|289436965|gb|EFD19458.1| oxidoreductase [Mycobacterium tuberculosis KZN 605]
gi|289537093|gb|EFD41671.1| oxidoreductase [Mycobacterium tuberculosis K85]
gi|289541725|gb|EFD45374.1| oxidoreductase [Mycobacterium tuberculosis T17]
gi|289688377|gb|EFD55865.1| oxidoreductase [Mycobacterium tuberculosis 02_1987]
gi|289689136|gb|EFD56565.1| oxidoreductase [Mycobacterium tuberculosis T92]
gi|289696730|gb|EFD64159.1| oxidoreductase [Mycobacterium tuberculosis EAS054]
gi|289711704|gb|EFD75720.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis GM 1503]
gi|289715745|gb|EFD79757.1| NADH-ubiquinone oxidoreductase [Mycobacterium tuberculosis T85]
gi|308213367|gb|EFO72766.1| oxidoreductase [Mycobacterium tuberculosis SUMu001]
gi|308328111|gb|EFP16962.1| oxidoreductase [Mycobacterium tuberculosis SUMu002]
gi|308332461|gb|EFP21312.1| oxidoreductase [Mycobacterium tuberculosis SUMu003]
gi|308336250|gb|EFP25101.1| oxidoreductase [Mycobacterium tuberculosis SUMu004]
gi|308339839|gb|EFP28690.1| oxidoreductase [Mycobacterium tuberculosis SUMu005]
gi|308343833|gb|EFP32684.1| oxidoreductase [Mycobacterium tuberculosis SUMu006]
gi|308351559|gb|EFP40410.1| oxidoreductase [Mycobacterium tuberculosis SUMu008]
gi|308352244|gb|EFP41095.1| oxidoreductase [Mycobacterium tuberculosis SUMu009]
gi|308356201|gb|EFP45052.1| oxidoreductase [Mycobacterium tuberculosis SUMu010]
gi|308360154|gb|EFP49005.1| oxidoreductase [Mycobacterium tuberculosis SUMu011]
gi|308367717|gb|EFP56568.1| oxidoreductase [Mycobacterium tuberculosis SUMu012]
gi|323717424|gb|EGB26629.1| oxidoreductase [Mycobacterium tuberculosis CDC1551A]
gi|326905842|gb|EGE52775.1| oxidoreductase [Mycobacterium tuberculosis W-148]
gi|328456789|gb|AEB02212.1| oxidoreductase [Mycobacterium tuberculosis KZN 4207]
Length = 159
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 46/116 (39%), Positives = 64/116 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C VE+ A P YD ERFG ASPR +D ++V G +T+ MA LR+ + P P
Sbjct: 44 SCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRP 103
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
R VI+ G CA G + +Y VV +VPVD+ + GCPPT A++ + + K
Sbjct: 104 RVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159
>gi|124485396|ref|YP_001030012.1| hypothetical protein Mlab_0571 [Methanocorpusculum labreanum Z]
gi|124362937|gb|ABN06745.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanocorpusculum
labreanum Z]
Length = 159
Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 70/133 (52%), Gaps = 4/133 (3%)
Query: 43 VDQLVTWARTGSLMW-MTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ Q R S+ +C C +E++ P+YD+E++G +PR++DV++V
Sbjct: 4 LQQFKNAVRQRSIHVCYVNTGSCNGCDIEILACLAPKYDIEQYGIYVHNNPREADVILVT 63
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-SYSVVRGCDRIVPVDIYVPG 158
G ++ + L ++D++PEP+ V+++G+C G ++ + + +PV VPG
Sbjct: 64 GGMSPQWLDKLPDLWDRVPEPKAVVTIGNCPISGCVFNRPGKLIDPPVSKYIPVTAAVPG 123
Query: 159 CPPTAEALIYGIL 171
CPP +I IL
Sbjct: 124 CPPRPSEIISAIL 136
>gi|15607224|ref|NP_214596.1| oxidoreductase [Mycobacterium tuberculosis H37Rv]
gi|2808739|emb|CAA16263.1| PROBABLE OXIDOREDUCTASE [Mycobacterium tuberculosis H37Rv]
Length = 159
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 45/116 (38%), Positives = 64/116 (55%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C VE+ A P YD ERFG ASP+ +D ++V G +T+ MA LR+ + P P
Sbjct: 44 SCNGCEVEISGAFGPVYDAERFGARLVASPQHADALLVTGVVTHNMAGPLRKTLEATPRP 103
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
R VI+ G CA G + +Y VV +VPVD+ + GCPPT A++ + + K
Sbjct: 104 RVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159
>gi|326403379|ref|YP_004283460.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
AIU301]
gi|325050240|dbj|BAJ80578.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
AIU301]
Length = 164
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ R + G A R +D+++V G T +A A+R+ M P
Sbjct: 35 SCGGCEIEIAACRRLRGGMAAQGIAMVEDLRAADILLVTGVATRNLAEAVRKSLAGMAPP 94
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
R+V++ G CA GG + +V+ G ++PVD+ + GCPP ++ G++ L + R
Sbjct: 95 RFVVAAGDCALDGGVFKGVPAVLGGVQAVIPVDLLIAGCPPAPRQILAGLVALVEANARE 154
Query: 181 GN 182
Sbjct: 155 PR 156
>gi|215413939|ref|ZP_03422601.1| oxidoreductase [Mycobacterium tuberculosis 94_M4241A]
gi|298527474|ref|ZP_07014883.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|298497268|gb|EFI32562.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
Length = 159
Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 45/116 (38%), Positives = 63/116 (54%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C VE+ A P YD RFG ASPR +D ++V G +T+ MA LR+ + P P
Sbjct: 44 SCNGCEVEISGAFGPVYDAGRFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRP 103
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
R VI+ G CA G + +Y VV +VPVD+ + GCPPT A++ + + K
Sbjct: 104 RVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIMAALRSVTGK 159
>gi|257077039|ref|ZP_05571400.1| Ni,Fe-hydrogenase III small subunit [Ferroplasma acidarmanus fer1]
Length = 199
Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 55 LMWMTF-GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
L + C VE P+YD RF +PR +D ++V G T+ M + L+
Sbjct: 84 LYPIDSGTCGACNVEFTTLFSPQYDTNRFKIFMSNTPRHADALVVMGVYTDGMEAVLKEA 143
Query: 114 YDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
YD MP P+ VI +G+CA GG R D+ DI V GCPPT ++I I+
Sbjct: 144 YDAMPSPKIVIGIGACALSGGIIGS-----RAMDKY---DIEVAGCPPTPASIINAIIKA 195
Query: 174 QKK 176
+ K
Sbjct: 196 RGK 198
>gi|13542288|ref|NP_111976.1| Ni,Fe-hydrogenase III small subunit [Thermoplasma volcanium GSS1]
gi|14325721|dbj|BAB60624.1| formate hydrogenlyase subunit 2 [Thermoplasma volcanium GSS1]
Length = 222
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 19/153 (12%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
F + + R+ + + G C +E + P+YD R G +PR +D +
Sbjct: 76 FTIKKTEDTFR--RSFHVFPIDSGACGACNMEFLSIFSPQYDANRLGIFMVNTPRYADAL 133
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD--- 153
IV G +T M AL R Y+ MPEP+ VI+MG+CA GG + P+D
Sbjct: 134 IVMGVMTPGMKEALDRAYEAMPEPKLVIAMGACAVTGGIMGEN-----------PLDREK 182
Query: 154 --IYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
+ + GCPP+ LI + K R+ +
Sbjct: 183 YNVEIAGCPPSPYTLIAALNAAMKDKRKADYFE 215
>gi|294340395|emb|CAZ88776.1| Putative NADH ubiquinone oxidoreductase, 20 kDa subunit [Thiomonas
sp. 3As]
Length = 273
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/103 (39%), Positives = 59/103 (57%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E+ P Y+L R G SPR +D+++V G +T M L R Y+ MP+P
Sbjct: 145 SCNGCESELQALLNPFYNLHRLGVFFTPSPRFADLLLVTGPVTAAMREPLLRTYEAMPQP 204
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
R+V++ G+CA GGG Y+ G D I+PVD+++PGCPP
Sbjct: 205 RWVMAAGTCATGGGTNGGGYACHEGLDGILPVDVWLPGCPPNP 247
>gi|288561258|ref|YP_003424744.1| energy-converting hydrogenase B subunit M EhbM [Methanobrevibacter
ruminantium M1]
gi|288543968|gb|ADC47852.1| energy-converting hydrogenase B subunit M EhbM [Methanobrevibacter
ruminantium M1]
Length = 148
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 70/136 (51%), Gaps = 10/136 (7%)
Query: 46 LVTWARTGSLMWM-TFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
L T +R+ ++ M + C ++ P++D+E++G +PR++D+++V G
Sbjct: 3 LKTLSRSKAIHIMLVYTGGCNGCDIEIVNAVLSPKFDMEQYGVFLTWNPREADILVVTGP 62
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS------VVRGCDRIVPVDIY 155
+T L +Y+ +P P+ V++ GSCA GG Y + + + ++PVD
Sbjct: 63 VTYDNRKPLEDIYNAIPNPKLVVAAGSCALMGGVYKNCHGDIPSEEIEGPVENVIPVDAK 122
Query: 156 VPGCPPTAEALIYGIL 171
VPGC + ++ G++
Sbjct: 123 VPGCAVRPQDVLAGVV 138
>gi|88603352|ref|YP_503530.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanospirillum
hungatei JF-1]
gi|88188814|gb|ABD41811.1| membrane-bound hydrogenase subunit ehaN [Methanospirillum hungatei
JF-1]
Length = 150
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 4/136 (2%)
Query: 40 VTSVDQLVTWARTGSLMWMTFG---LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM 96
+T++ L R S+ C +E++ PRYDLE++G +PR++DV+
Sbjct: 1 MTTLQSLKNAVRQRSIHVCYVDTGSCNGCDIEVLACLSPRYDLEQYGIYVHNNPREADVL 60
Query: 97 IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-YSVVRGCDRIVPVDIY 155
++ G +T + LR V+D++PEP+ +S+G+C G + +P+
Sbjct: 61 LIIGGVTPQWEDKLRMVWDKIPEPKVAVSIGNCPISGCVFSRPQTLTRAPAKSYIPIAAE 120
Query: 156 VPGCPPTAEALIYGIL 171
VPGCPP +I IL
Sbjct: 121 VPGCPPRPTEIIQAIL 136
>gi|254166691|ref|ZP_04873545.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
[Aciduliprofundum boonei T469]
gi|289596449|ref|YP_003483145.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aciduliprofundum
boonei T469]
gi|197624301|gb|EDY36862.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
[Aciduliprofundum boonei T469]
gi|289534236|gb|ADD08583.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aciduliprofundum
boonei T469]
Length = 179
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 12/113 (10%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
+ C E+ P+YD+ R GF PR +D+++V G T KM L+ Y+QMP+P
Sbjct: 73 SCSSCNREISLLGAPQYDMNRLGFFFTPVPRHADILLVIGEPTEKMIPVLKEAYEQMPKP 132
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
+ V++ G+CAN ++I+ VD V GCPP A++ +L+L
Sbjct: 133 KIVVTAGACAN------------EKIEKIIKVDARVSGCPPQPIAILKALLML 173
>gi|148643124|ref|YP_001273637.1| energy-converting hydrogenase B, subunit M, EhbM
[Methanobrevibacter smithii ATCC 35061]
gi|222445361|ref|ZP_03607876.1| hypothetical protein METSMIALI_00989 [Methanobrevibacter smithii
DSM 2375]
gi|261350078|ref|ZP_05975495.1| putative hydrogenase, group 4, EchC subunit [Methanobrevibacter
smithii DSM 2374]
gi|148552141|gb|ABQ87269.1| energy-converting hydrogenase B, subunit M, EhbM
[Methanobrevibacter smithii ATCC 35061]
gi|222434926|gb|EEE42091.1| hypothetical protein METSMIALI_00989 [Methanobrevibacter smithii
DSM 2375]
gi|288860864|gb|EFC93162.1| putative hydrogenase, group 4, EchC subunit [Methanobrevibacter
smithii DSM 2374]
Length = 148
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 10/142 (7%)
Query: 46 LVTWARTGSLM-WMTFGLACCAVEM---MQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
+ +++R ++ + + C ++ PR+D E++ +PR++DV++V G
Sbjct: 3 IKSFSRARAIHLMLVYTGGCNGCDIEIVNSVLSPRFDAEQYKVFLTWNPREADVLVVTGP 62
Query: 102 LTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS------VVRGCDRIVPVDIY 155
+T L +Y +PEP+ V++ GSCA GG Y + + + I+PVD
Sbjct: 63 VTKLNRKPLEEIYKAIPEPKLVVAAGSCALMGGVYKNIHGDIPSEEIEGPVENIIPVDAK 122
Query: 156 VPGCPPTAEALIYGILLLQKKI 177
VPGC + ++ G++ + K+
Sbjct: 123 VPGCAVRPQDVLSGVVSILPKL 144
>gi|254167339|ref|ZP_04874191.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
[Aciduliprofundum boonei T469]
gi|197623602|gb|EDY36165.1| NADH ubiquinone oxidoreductase, 20 Kd subunit family
[Aciduliprofundum boonei T469]
Length = 179
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 12/113 (10%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
+ C E+ + P+YDL R GF PR +D+++V G T KM L+ Y+QMPEP
Sbjct: 73 SCSSCNREISLLNSPQYDLHRLGFFFTPVPRHADILLVIGEPTEKMIPVLKEAYEQMPEP 132
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
+ V++ G+CAN ++I+ VD V GCPP A++ +L+L
Sbjct: 133 KIVMTAGACAN------------EKIEKIIKVDARVSGCPPQPIAILKALLML 173
>gi|237757076|ref|ZP_04585519.1| NADH-quinone oxidoreductase, chain 6 [Sulfurihydrogenibium
yellowstonense SS-5]
gi|237690765|gb|EEP59930.1| NADH-quinone oxidoreductase, chain 6 [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 97
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/68 (60%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
A LR +Y+QMP+P++VISMG CA+GGG + +YS ++G DRI+PVD+Y+PGCPPT +AL
Sbjct: 3 APMLRLIYEQMPDPKWVISMGGCASGGGPFP-TYSTLQGVDRIIPVDVYIPGCPPTPQAL 61
Query: 167 IYGILLLQ 174
++GIL LQ
Sbjct: 62 LWGILELQ 69
>gi|115948823|ref|XP_001196585.1| PREDICTED: similar to mitochondrial complex I subunit NDUFS7,
partial [Strongylocentrotus purpuratus]
Length = 82
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 61/76 (80%), Positives = 66/76 (86%)
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 7 SSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRK 66
Query: 113 VYDQMPEPRYVISMGS 128
VYDQMPEPR+VISMGS
Sbjct: 67 VYDQMPEPRWVISMGS 82
>gi|73658458|emb|CAI99039.1| NADH dehydrogenase 32 kD subunit [Arabidopsis thaliana]
gi|73658460|emb|CAI99042.1| NADH dehydrogenase 32 kD subunit [Arabidopsis thaliana]
Length = 114
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 121 RYVISMGSCANGGGYY-HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRR 179
+YVI+MG+C GG + SYS VRG D+++PVD+Y+PGCPP EA+I I L+KKI R
Sbjct: 1 KYVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAR 60
Query: 180 V 180
Sbjct: 61 E 61
>gi|268679821|ref|YP_003304252.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum
deleyianum DSM 6946]
gi|268617852|gb|ACZ12217.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sulfurospirillum
deleyianum DSM 6946]
Length = 138
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 61 GLACCAVEMMQ-ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
C VE++ +P++ + G P +++++V G +T + L+ Q+P
Sbjct: 14 SCNGCDVEILASVLLPKFGFDALGCVYTNDPTLANILLVTGAITARSTPYLQAALKQLPS 73
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
+ V+++G C GG + SY++ D V VD+ + GCPP+ + + G+
Sbjct: 74 KKIVVALGICPISGGVFRDSYAITGPLDTFVDVDVNISGCPPSPKEIAQGLAQ 126
>gi|218513798|ref|ZP_03510638.1| NADH-ubiquinone oxidoreductase protein, chain B [Rhizobium etli
8C-3]
Length = 77
Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 39/67 (58%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
MPEPR+VI+MG+CA GG Y+ +Y+VV+G + VPVD++VPGCPP EAL++G LLLQ+K
Sbjct: 1 MPEPRWVIAMGTCAISGGVYN-TYAVVQGSETFVPVDVHVPGCPPRPEALMHGFLLLQEK 59
Query: 177 IRRVGNV 183
I+R +
Sbjct: 60 IKRSRAL 66
>gi|115691401|ref|XP_794478.2| PREDICTED: similar to mitochondrial complex I subunit NDUFS7,
partial [Strongylocentrotus purpuratus]
Length = 81
Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats.
Identities = 60/75 (80%), Positives = 65/75 (86%)
Query: 53 GSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
SL MTFGLACCAVEMM + PRYD++RFG RASPRQSDVMIVAGTLTNKMA ALR+
Sbjct: 7 SSLWPMTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRK 66
Query: 113 VYDQMPEPRYVISMG 127
VYDQMPEPR+VISMG
Sbjct: 67 VYDQMPEPRWVISMG 81
>gi|307353348|ref|YP_003894399.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
petrolearius DSM 11571]
gi|307156581|gb|ADN35961.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
petrolearius DSM 11571]
Length = 160
Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 71/133 (53%), Gaps = 4/133 (3%)
Query: 43 VDQLVTWARTGSLMW-MTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ +L R+ S+ +C C +E++ PRYDLE++G +PR++DV+++
Sbjct: 4 IQKLKNKVRSKSIHVSYVNVGSCNGCDIEILACLSPRYDLEQYGIYVHNNPREADVLLIT 63
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS-VVRGCDRIVPVDIYVPG 158
G L + L +++++PEP+ I++G+C G ++ S V + +P+ +PG
Sbjct: 64 GALCEQWDDKLVSLWEKIPEPKAAITIGNCPVSGCVFNRRGSYVNPPVSKHIPIAASIPG 123
Query: 159 CPPTAEALIYGIL 171
CPP ++ IL
Sbjct: 124 CPPRPSEIVSTIL 136
>gi|269128891|ref|YP_003302261.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora
curvata DSM 43183]
gi|268313849|gb|ACZ00224.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora
curvata DSM 43183]
Length = 158
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/113 (38%), Positives = 64/113 (56%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +E+ P +D ER+G ASPR +D ++V G +T M +ALRR Y+ +PEP
Sbjct: 43 SCNGCELEIASVFGPVHDAERYGARLVASPRHADALLVTGPVTRNMETALRRTYEAVPEP 102
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
+ VI++G CA G + +Y V +VPVD+ VPGCPP E + + L
Sbjct: 103 KVVIALGDCARNCGVFAGAYGVAGAVGDVVPVDVEVPGCPPRPEDITKALRGL 155
>gi|291515582|emb|CBK64792.1| Ni,Fe-hydrogenase III small subunit [Alistipes shahii WAL 8301]
Length = 254
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 2/115 (1%)
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
+E+ +DL RFG ASPR +D ++V+G +T MA AL YD + EP+ +++
Sbjct: 141 MELGATGNVNFDLGRFGIGFTASPRHADGVVVSGPVTVNMAEALEICYDAVAEPKILVAC 200
Query: 127 GSCANGGGYYHYSYSVVRG-CDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
GS A GG + S +V R D P D+++PG P I G++ L + R
Sbjct: 201 GSEACSGGLFADSRAVDRTFFDTHTP-DLWLPGAPTHPMTYIDGMMNLLGRKTRQ 254
>gi|313157372|gb|EFR56795.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Alistipes sp. HGB5]
Length = 254
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 58/114 (50%)
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
+E+ +DL R+G ASPR +D ++V+G +T MA ALR D + P+ ++
Sbjct: 141 MELNATGNVNFDLGRYGIGFTASPRHADGVVVSGPITVNMAEALRICCDAVANPKILVVC 200
Query: 127 GSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
GS A GG + S +V R D+++PG P I GIL L K +R
Sbjct: 201 GSEACSGGLFAGSRAVDRTFFDTHAADLWLPGAPTHPMTFIDGILNLLGKKKRE 254
>gi|183981668|ref|YP_001849959.1| oxidoreductase [Mycobacterium marinum M]
gi|183174994|gb|ACC40104.1| oxidoreductase [Mycobacterium marinum M]
Length = 159
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/111 (40%), Positives = 61/111 (54%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C VE+ A P YD ERFG ASPR +D ++V G +T MA L+ P+P
Sbjct: 44 SCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTRNMAQPLKNTLAATPQP 103
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
R VI+ G CA G + +Y VV +VPVD+ VPGCPPT + ++ +
Sbjct: 104 RVVIACGDCALNRGVFADAYGVVGAVSEVVPVDVEVPGCPPTPDQVVAALR 154
>gi|48477897|ref|YP_023603.1| formate hydrogenlyase subunit 7 [Picrophilus torridus DSM 9790]
gi|48430545|gb|AAT43410.1| formate hydrogenlyase subunit 7 [Picrophilus torridus DSM 9790]
Length = 202
Score = 99.7 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 8/114 (7%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C E+ S+P YDL R+ +PR +D +I++G M + MP+P
Sbjct: 96 TCGACNSELFSISIPEYDLTRYHIFFTNTPRHADAIILSGIYNESMKDVIDNALGAMPKP 155
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
Y+I +G+CA GG + + + +PGCPP ++ G+ L
Sbjct: 156 GYLILLGACALSGGIIGSGHE--------IKAVLEIPGCPPNPYTILKGLRRLM 201
>gi|118617491|ref|YP_905823.1| oxidoreductase [Mycobacterium ulcerans Agy99]
gi|118569601|gb|ABL04352.1| oxidoreductase [Mycobacterium ulcerans Agy99]
Length = 159
Score = 99.7 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 60/111 (54%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C VE+ A P YD ER G ASPR +D ++V G +T MA L+ P+P
Sbjct: 44 SCNGCEVEISGAFGPVYDAERVGARLVASPRHADALLVTGVVTRNMAQPLKNTLAATPQP 103
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
R VI+ G CA G + +Y VV +VPVD+ VPGCPPT + ++ +
Sbjct: 104 RVVIACGDCALNRGVFADAYGVVGAVSEVVPVDVEVPGCPPTPDQVVAALR 154
>gi|221104717|ref|XP_002169223.1| PREDICTED: similar to CG9172 CG9172-PA, partial [Hydra
magnipapillata]
Length = 70
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 58/70 (82%), Positives = 63/70 (90%)
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
MTFGLACCAVEMM + PRYD++RFG RASPRQ+DVMIVAGTLTNKMA ALRRVYDQM
Sbjct: 1 MTFGLACCAVEMMHFAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRRVYDQM 60
Query: 118 PEPRYVISMG 127
PEPR+VISMG
Sbjct: 61 PEPRWVISMG 70
>gi|289804981|ref|ZP_06535610.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 89
Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 48/90 (53%), Positives = 64/90 (71%), Gaps = 3/90 (3%)
Query: 66 AVEMMQASMPRYDLERFGFAP-RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
VEM+ + +D+ RFG RASPRQ+D+M+VAGT KMA ++R+YDQM EP++VI
Sbjct: 1 YVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVI 60
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
SMG+CAN GG Y YSVV+G +PVD+
Sbjct: 61 SMGACANSGGMY-DIYSVVQGLIS-LPVDV 88
>gi|37718833|gb|AAR01704.1| putative NADH ubiquinone oxidoreductase [Oryza sativa Japonica
Group]
Length = 97
Score = 96.2 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/67 (62%), Positives = 47/67 (70%)
Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
+ WAR GS+ MTFGLAC AVEMM A RYD +RFG SPRQSD MI+ GTLTNKM
Sbjct: 1 MNWARRGSIWPMTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKM 60
Query: 107 ASALRRV 113
ALR+
Sbjct: 61 VPALRKA 67
>gi|114329051|ref|YP_746208.1| formate hydrogenlyase subunit 7 [Granulibacter bethesdensis
CGDNIH1]
gi|114317225|gb|ABI63285.1| formate hydrogenlyase subunit 7 [Granulibacter bethesdensis
CGDNIH1]
Length = 174
Score = 93.9 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
L + G + C +E+ L R G SP +D++++ G + + SA+ + +
Sbjct: 49 LHVESGGGSACLLELEALRAAPGLLARHGLRFVTSPLHADILLITGDGCHNLTSAIHQAW 108
Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
+ MP PR+ I++G A G G SY+ + +P D+ +PG PP A+ ++ G+ L
Sbjct: 109 EAMPGPRWAIAVGDGAAGDGLLRGSYASTGNMEE-IPFDLVIPGSPPAADTILSGLRAL 166
>gi|90186408|gb|ABD91507.1| putative NADH dehydrogenase (ubiquinone) chain PSST precursor
[Oryza sativa Indica Group]
Length = 93
Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 45/64 (70%), Positives = 49/64 (76%)
Query: 47 VTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
+ WAR GS+ MTFGLACCAVEMM A YDL+RFG R SPRQSD MI+AGTLTNKM
Sbjct: 1 MNWARRGSIWPMTFGLACCAVEMMHAGASCYDLDRFGVIFRPSPRQSDCMIIAGTLTNKM 60
Query: 107 ASAL 110
A AL
Sbjct: 61 APAL 64
>gi|183221787|ref|YP_001839783.1| hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189911861|ref|YP_001963416.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776537|gb|ABZ94838.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Ames)']
gi|167780209|gb|ABZ98507.1| Hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 273
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
E+ + +D ER G ASP+ +D ++ +G ++ +M L+ +D + EPR +I+ G
Sbjct: 155 ELNASFNSVFDSEREGIRCVASPKHADTIVFSGPISEQMEGPLQTAWDVLSEPRALIACG 214
Query: 128 SCANGGGYYHYSYSVVRGCDRIVP--VDIYVPGCPPTAEALIYGILLLQKK 176
+ A GG + +P D+Y+ G PP + ++ G LL +
Sbjct: 215 TEAVSGGLFPKGK---------IPKEPDLYISGDPPRPDVILQGFRLLIGR 256
>gi|314924059|gb|EFS87890.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL001PA1]
gi|314965030|gb|EFT09129.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL082PA2]
gi|314983106|gb|EFT27198.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL110PA3]
gi|315090649|gb|EFT62625.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL110PA4]
gi|315093837|gb|EFT65813.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL060PA1]
gi|315104055|gb|EFT76031.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL050PA2]
gi|327326472|gb|EGE68261.1| NADH dehydrogenase subunit [Propionibacterium acnes HL103PA1]
Length = 132
Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
+ + W GS+ + LACC VE A + P +P V+ V+GT+T
Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVRE--EIPDGAPI---VVFVSGTVTT 56
Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
+A +R ++ P V++ G+CA GG Y S VV G D V D ++PGCPP
Sbjct: 57 GLAPVVRDTVGELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116
Query: 162 TAEAL 166
E L
Sbjct: 117 GPETL 121
>gi|117927935|ref|YP_872486.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidothermus
cellulolyticus 11B]
gi|117648398|gb|ABK52500.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidothermus
cellulolyticus 11B]
Length = 269
Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
E++ P YD+ R G ASPR +DV++V G + MA+ L R P P VI+
Sbjct: 140 WEVLALLNPVYDIHRLGIFFTASPRHADVLLVTGVGSRGMAAPLARTLQAAPRPLVVIAA 199
Query: 127 GSCANGGGYYHYSYSVVRGCDRIV------------------PVDIYVPGCPPTA 163
G+ A GG H +Y+ G ++ VDI+VPG PPT
Sbjct: 200 GTDAISGGLVHPTYATSGGIGDLIAATPDSAGATGAADGDPVRVDIWVPGSPPTP 254
>gi|295673893|ref|XP_002797492.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides
brasiliensis Pb01]
gi|226280142|gb|EEH35708.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Paracoccidioides
brasiliensis Pb01]
Length = 159
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/69 (57%), Positives = 50/69 (72%)
Query: 42 SVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGT 101
S+D++V WAR GSL ++FGLACC +EMM SMPRYD +R G RASPRQSDV+IVA
Sbjct: 41 SIDKVVNWAREGSLWPLSFGLACCNMEMMAVSMPRYDQDRLGTIFRASPRQSDVIIVADA 100
Query: 102 LTNKMASAL 110
+T + L
Sbjct: 101 VTKQDGPRL 109
>gi|282855245|ref|ZP_06264577.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
acnes J139]
gi|282581833|gb|EFB87218.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
acnes J139]
Length = 132
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
+ + W GS+ + LACC VE A + P +P V+ V+GT+T
Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVRE--EIPDGAPI---VVFVSGTVTT 56
Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
+A +R ++ P V++ G+CA GG Y S VV G D V D ++PGCPP
Sbjct: 57 GLAPVVRDTVGELKRNHPVDVMAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116
Query: 162 TAEAL 166
E L
Sbjct: 117 GPETL 121
>gi|327333152|gb|EGE74879.1| NADH dehydrogenase subunit [Propionibacterium acnes HL097PA1]
Length = 132
Score = 91.6 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
+ + W GS+ + LACC VE A + P +P V++V+GT+T
Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVSANAPVRE--EIPDGAPI---VVLVSGTVTT 56
Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
+A + ++ P V++ G+CA GG Y S VV G D V D ++PGCPP
Sbjct: 57 GLAPVVSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116
Query: 162 TAEAL 166
E L
Sbjct: 117 GPETL 121
>gi|50843355|ref|YP_056582.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202]
gi|289424815|ref|ZP_06426597.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
acnes SK187]
gi|289427723|ref|ZP_06429435.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
acnes J165]
gi|295131426|ref|YP_003582089.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
acnes SK137]
gi|50840957|gb|AAT83624.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202]
gi|289154778|gb|EFD03461.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
acnes SK187]
gi|289159214|gb|EFD07406.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
acnes J165]
gi|291376669|gb|ADE00524.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
acnes SK137]
gi|313763090|gb|EFS34454.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL013PA1]
gi|313773016|gb|EFS38982.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL074PA1]
gi|313794097|gb|EFS42119.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL110PA1]
gi|313802411|gb|EFS43636.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL110PA2]
gi|313807856|gb|EFS46340.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL087PA2]
gi|313812031|gb|EFS49745.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL083PA1]
gi|313812142|gb|EFS49856.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL025PA1]
gi|313816888|gb|EFS54602.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL059PA1]
gi|313819192|gb|EFS56906.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL046PA2]
gi|313819769|gb|EFS57483.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL036PA1]
gi|313823886|gb|EFS61600.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL036PA2]
gi|313827247|gb|EFS64961.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL063PA1]
gi|313828423|gb|EFS66137.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL063PA2]
gi|313831120|gb|EFS68834.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL007PA1]
gi|313833477|gb|EFS71191.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL056PA1]
gi|313838111|gb|EFS75825.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL086PA1]
gi|314914551|gb|EFS78382.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL005PA4]
gi|314919205|gb|EFS83036.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL050PA1]
gi|314920639|gb|EFS84470.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL050PA3]
gi|314925722|gb|EFS89553.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL036PA3]
gi|314931451|gb|EFS95282.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL067PA1]
gi|314957011|gb|EFT01117.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL027PA1]
gi|314957825|gb|EFT01928.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL002PA1]
gi|314960666|gb|EFT04767.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL002PA2]
gi|314963378|gb|EFT07478.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL082PA1]
gi|314969727|gb|EFT13825.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL037PA1]
gi|314974302|gb|EFT18398.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL053PA1]
gi|314976926|gb|EFT21021.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL045PA1]
gi|314979886|gb|EFT23980.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL072PA2]
gi|314985816|gb|EFT29908.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL005PA1]
gi|314988401|gb|EFT32492.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL005PA2]
gi|314988825|gb|EFT32916.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL005PA3]
gi|315077114|gb|EFT49189.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL053PA2]
gi|315084887|gb|EFT56863.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL027PA2]
gi|315087244|gb|EFT59220.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL002PA3]
gi|315088977|gb|EFT60953.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL072PA1]
gi|315096825|gb|EFT68801.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL038PA1]
gi|315100090|gb|EFT72066.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL059PA2]
gi|315100586|gb|EFT72562.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL046PA1]
gi|315106026|gb|EFT78002.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL030PA1]
gi|315109357|gb|EFT81333.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL030PA2]
gi|327325634|gb|EGE67432.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA2]
gi|327328228|gb|EGE69995.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA3]
gi|327445304|gb|EGE91958.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL043PA1]
gi|327446944|gb|EGE93598.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL043PA2]
gi|327449059|gb|EGE95713.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL013PA2]
gi|327451405|gb|EGE98059.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL092PA1]
gi|327452595|gb|EGE99249.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL087PA3]
gi|327457638|gb|EGF04293.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL083PA2]
gi|328751922|gb|EGF65538.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL087PA1]
gi|328756933|gb|EGF70549.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL020PA1]
gi|328759054|gb|EGF72670.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL025PA2]
gi|328762245|gb|EGF75737.1| NADH dehydrogenase subunit [Propionibacterium acnes HL099PA1]
gi|332676294|gb|AEE73110.1| NADH dehydrogenase subunit [Propionibacterium acnes 266]
Length = 132
Score = 90.8 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
+ + W GS+ + LACC VE A + + P +P V++V+GT+T
Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVLANAPVRE--EIPDGAPI---VVLVSGTVTT 56
Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
+A + ++ P V++ G+CA GG Y S VV G D V D ++PGCPP
Sbjct: 57 GLAPVVSDTVHELKRNHPVDVVAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116
Query: 162 TAEAL 166
E L
Sbjct: 117 GPETL 121
>gi|302421904|ref|XP_003008782.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Verticillium
albo-atrum VaMs.102]
gi|261351928|gb|EEY14356.1| NADH-ubiquinone oxidoreductase 20 kDa subunit [Verticillium
albo-atrum VaMs.102]
Length = 67
Score = 90.4 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/79 (56%), Positives = 53/79 (67%), Gaps = 17/79 (21%)
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEA 165
MA ALR+VYDQMPEPR Y+VVRGCDRIVPVD+YVPGCPPT+EA
Sbjct: 1 MAPALRQVYDQMPEPR-----------------CYAVVRGCDRIVPVDVYVPGCPPTSEA 43
Query: 166 LIYGILLLQKKIRRVGNVK 184
L+YGI LQ+K+R +
Sbjct: 44 LMYGIFQLQRKMRNTKITR 62
>gi|164513234|emb|CAP11710.1| NADH dehydrogenase subunit K [Acorus calamus]
gi|164513236|emb|CAP11711.1| NADH dehydrogenase subunit K [Acorus gramineus]
Length = 72
Score = 88.1 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 54/72 (75%)
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
+ +G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+Q
Sbjct: 1 PLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQ 60
Query: 117 MPEPRYVISMGS 128
MPEP+YVI+MG+
Sbjct: 61 MPEPKYVIAMGA 72
>gi|330993943|ref|ZP_08317873.1| Formate hydrogenlyase subunit 7 [Gluconacetobacter sp. SXCC-1]
gi|329758889|gb|EGG75403.1| Formate hydrogenlyase subunit 7 [Gluconacetobacter sp. SXCC-1]
Length = 166
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G C +E+ S D ++PRQ+ ++++ G+L+ +MA + + MP
Sbjct: 44 GCTGCGLELRAVSRAL-DAGNAAIRFVSTPRQAGLLLLTGSLSVEMAPVVELAWQAMPGS 102
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
R + +G CA GG + SY+V+ G + +PGCPP ++ ++
Sbjct: 103 RLLAVVGDCAVDGGVFTPSYAVLGGVGGRAQASLSLPGCPPAPAMILEALIR 154
>gi|241753592|ref|XP_002401137.1| NADH-plastoquinone oxidoreductase, putative [Ixodes scapularis]
gi|215508356|gb|EEC17810.1| NADH-plastoquinone oxidoreductase, putative [Ixodes scapularis]
Length = 162
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/48 (91%), Positives = 47/48 (97%)
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPG 158
R+VYDQM EPR+VISMGSCANGGGYYHYSYSVVRGCDRI+PVDIYVPG
Sbjct: 78 RKVYDQMLEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPG 125
>gi|213863448|ref|ZP_03386703.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
Length = 72
Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%)
Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY 135
+D ERFG SPR +D+++ G +T M S R + P+P+ IS G+C N GG
Sbjct: 1 MFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQSAPDPKICISYGACGNSGGI 60
Query: 136 YHYSYSVVRGCD 147
+H Y V G D
Sbjct: 61 FHDLYCVWGGTD 72
>gi|148828675|gb|ABR13960.1| NDH-K [Thuja plicata]
Length = 103
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 20 EKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDL 79
++ S + + T + T+++ L WAR SL + +G +CC +E R+D
Sbjct: 22 PAINPIESSLLHQATPNSVISTTLNDLSNWARLSSLWPLLYGTSCCFIEFASLIGSRFDF 81
Query: 80 ERFGFAPRASPRQSDVMIVAGT 101
+R+G PR+SPRQ+D++I T
Sbjct: 82 DRYGLVPRSSPRQADLLITPPT 103
>gi|116326949|ref|YP_796669.1| metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116332385|ref|YP_802103.1| metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
gi|116119693|gb|ABJ77736.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii
serovar Hardjo-bovis L550]
gi|116126074|gb|ABJ77345.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira borgpetersenii
serovar Hardjo-bovis JB197]
Length = 273
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
E+ + +D E ASP+ +D ++ +G + M L ++ MP P+ +++ G
Sbjct: 152 EINASFNALFDSEASKIRVVASPKHADALVYSGPVGPNMEEPLNTAWETMPSPKALVACG 211
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
S A GG + D+++ G PP + +I L
Sbjct: 212 SEAVSGGLFKLGKLPKEP-------DLFIGGDPPRPDVIISAFRYLM 251
>gi|24216977|ref|NP_714458.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans
serovar Lai str. 56601]
gi|24198376|gb|AAN51476.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans
serovar Lai str. 56601]
Length = 273
Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
E+ + +D E ASP+ +D ++ +G + M L ++ MP P+ +++ G
Sbjct: 152 EINASFNALFDSEASKIRVVASPKHADALVYSGPVGPNMEGPLDTAWETMPSPKALVACG 211
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
S A GG + + D+++ G PP + ++ L
Sbjct: 212 SEAVSGGLFKLGKLPKQP-------DLFIGGDPPRPDVIVSAFRYLM 251
>gi|313836232|gb|EFS73946.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL037PA2]
gi|314927669|gb|EFS91500.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL044PA1]
gi|314971332|gb|EFT15430.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL037PA3]
gi|328906272|gb|EGG26047.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Propionibacterium
sp. P08]
Length = 132
Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
+ + W GS+ + LACC VE A + + V+ V+GT+T
Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESEVAVPATAAVRE-----EIPDGAAIVVFVSGTVTT 56
Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
+ASA+R D++ P V++ G+CA GG Y S V G D + D ++PGCPP
Sbjct: 57 GLASAVRVTVDELKRNHPVDVVAFGACACAGGPYWDSAGVAAGLPDAGLDADHWIPGCPP 116
Query: 162 TAEAL 166
+AL
Sbjct: 117 GPDAL 121
>gi|164513246|emb|CAP11716.1| NADH dehydrogenase subunit K [Betula insignis]
gi|164513248|emb|CAP11717.1| NADH dehydrogenase subunit K [Betula pendula]
Length = 67
Score = 83.5 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/67 (52%), Positives = 51/67 (76%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP
Sbjct: 1 GTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEP 60
Query: 121 RYVISMG 127
+YVI+MG
Sbjct: 61 KYVIAMG 67
>gi|45659241|ref|YP_003327.1| hydrogenase subunit [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|45602487|gb|AAS71964.1| hydrogenase subunit [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
Length = 273
Score = 83.1 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
E+ + +D E ASP+ +D ++ +G + M L ++ MP P+ +++ G
Sbjct: 152 EINASFNALFDSEASKIRVVASPKHADALVYSGPVGPNMEGPLDTAWETMPSPKALVACG 211
Query: 128 SCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
S A GG + + D+++ G PP + ++ L
Sbjct: 212 SEAVSGGLFKLGKLPKQP-------DLFIGGDPPRPDVIVSAFRYLM 251
>gi|213026204|ref|ZP_03340651.1| hydrogenase activity [Salmonella enterica subsp. enterica serovar
Typhi str. 404ty]
Length = 58
Score = 81.6 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/53 (52%), Positives = 36/53 (67%)
Query: 120 PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
P+ IS G+C N GG +H Y V G D+IVPVD+Y+PGCPPT A +YG +
Sbjct: 5 PKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAM 57
>gi|300951811|ref|ZP_07165624.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1]
gi|300448958|gb|EFK12578.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 116-1]
Length = 116
Score = 81.6 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGG 134
R Y+ P+ + +S G+C GGG
Sbjct: 92 ALRAYESAPDHKICVSYGACGVGGG 116
>gi|89671|pir||PX0053 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) 20K chain - bovine
(fragments)
Length = 96
Score = 80.4 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 45/52 (86%), Positives = 47/52 (90%), Gaps = 4/52 (7%)
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPP 161
L +VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVR IVPVDIYVPGCPP
Sbjct: 36 LIKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVR----IVPVDIYVPGCPP 83
>gi|300820847|ref|ZP_07100997.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7]
gi|331669229|ref|ZP_08370077.1| hydrogenase-4 component I [Escherichia coli TA271]
gi|331678474|ref|ZP_08379149.1| hydrogenase-4 component I [Escherichia coli H591]
gi|300526600|gb|EFK47669.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 119-7]
gi|331064423|gb|EGI36334.1| hydrogenase-4 component I [Escherichia coli TA271]
gi|331074934|gb|EGI46254.1| hydrogenase-4 component I [Escherichia coli H591]
Length = 173
Score = 80.4 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
R Y+ P+ + +S G+C GGG+ S +
Sbjct: 92 ALRAYESAPDHKICVSYGACGAGGGFSTISTA 123
>gi|323177391|gb|EFZ62979.1| hydrogenase-4 component I [Escherichia coli 1180]
Length = 170
Score = 80.4 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 29 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMP 88
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
R Y+ P+ + +S G+C GGG+ S +
Sbjct: 89 ALRAYESAPDHKICVSYGACGAGGGFSTISTA 120
>gi|256017364|ref|ZP_05431229.1| hydrogenase 4, Fe-S subunit [Shigella sp. D9]
gi|323156092|gb|EFZ42251.1| hydrogenase-4 component I [Escherichia coli EPECa14]
gi|323944709|gb|EGB40776.1| NADH ubiquinone oxidoreductase [Escherichia coli H120]
Length = 173
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
R Y+ P+ + +S G+C GGG+ S +
Sbjct: 92 ALRAYESAPDHKICVSYGACGAGGGFSTISTA 123
>gi|307312517|ref|ZP_07592150.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W]
gi|306907440|gb|EFN37944.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Escherichia coli W]
gi|323184454|gb|EFZ69829.1| hydrogenase-4 component I [Escherichia coli 1357]
Length = 173
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVISSPRHADILLFTGAVTRAMRMP 91
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
R Y+ P+ + +S G+C GGG+ S +
Sbjct: 92 ALRAYESAPDHKICVSYGACGAGGGFSTISTA 123
>gi|218661622|ref|ZP_03517552.1| NADH dehydrogenase subunit B [Rhizobium etli IE4771]
Length = 74
Score = 78.5 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 38/68 (55%), Positives = 47/68 (69%)
Query: 3 LTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGL 62
+ + II + + DA F I++E+ KGFLVTS D+L+ WARTGSLMWMTFGL
Sbjct: 7 VAQQPKGIIDPSTGKPIGSNDAFFGEINNELADKGFLVTSTDELINWARTGSLMWMTFGL 66
Query: 63 ACCAVEMM 70
ACCAVEMM
Sbjct: 67 ACCAVEMM 74
>gi|164513262|emb|CAP11724.1| NADH dehydrogenase subunit K [Paeonia kavachensis]
gi|164513264|emb|CAP11725.1| NADH dehydrogenase [Paeonia tenuifolia]
gi|164513266|emb|CAP11726.1| NADH dehydrogenase [Sophora microphylla]
gi|164513268|emb|CAP11727.1| NADH dehydrogenase [Sophora toromiro]
Length = 63
Score = 78.1 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 45/63 (71%)
Query: 57 WMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQ 116
+ +G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+Q
Sbjct: 1 PLLYGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQ 60
Query: 117 MPE 119
MPE
Sbjct: 61 MPE 63
>gi|308375059|ref|ZP_07667937.1| oxidoreductase [Mycobacterium tuberculosis SUMu007]
gi|308347618|gb|EFP36469.1| oxidoreductase [Mycobacterium tuberculosis SUMu007]
Length = 143
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/75 (42%), Positives = 41/75 (54%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C VE+ A P YD ERFG ASPR +D ++V G +T+ MA LR+ + P P
Sbjct: 32 SCNGCEVEISGAFGPVYDAERFGARLVASPRHADALLVTGVVTHNMAGPLRKTLEATPRP 91
Query: 121 RYVISMGSCANGGGY 135
R VI+ G CA G
Sbjct: 92 RVVIACGDCALNRGC 106
>gi|224538212|ref|ZP_03678751.1| hypothetical protein BACCELL_03103 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520144|gb|EEF89249.1| hypothetical protein BACCELL_03103 [Bacteroides cellulosilyticus
DSM 14838]
Length = 91
Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLE 80
+ ++ E+ G + +D + W R+ SL +TF +CC +E M RYD+
Sbjct: 20 NETLEKLVRELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMALGAARYDMA 79
Query: 81 RFGFAP-RASPR 91
RFGF RASPR
Sbjct: 80 RFGFEVARASPR 91
>gi|164513250|emb|CAP11718.1| NADH dehydrogenase subunit K [Coffea mauritiana]
gi|164513252|emb|CAP11719.1| NADH dehydrogenase subunit K [Coffea myrtifolia]
Length = 61
Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 47/61 (77%)
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
+E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M
Sbjct: 1 MEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 60
Query: 127 G 127
G
Sbjct: 61 G 61
>gi|164513258|emb|CAP11722.1| NADH dehydrogenase subunit K [Hieracium leyianum]
gi|164513260|emb|CAP11723.1| NADH dehydrogenase subunit K [Hieracium pellucidum]
Length = 61
Score = 76.2 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 44/60 (73%)
Query: 60 FGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPE 119
+G +CC +E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPE
Sbjct: 2 YGTSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPE 61
>gi|303245121|ref|ZP_07331437.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
gi|302484504|gb|EFL47452.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
Length = 160
Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 9/98 (9%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---- 139
R P D+ +V G + +++ + + + + V+++G+CA GG YS
Sbjct: 56 LIERKIPDNIDIALVEGAVCLDDEHSIKDILETRKKAKIVVALGACAATGGVLRYSRGGQ 115
Query: 140 -----YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
++ ++ VD+ +PGCPP+ E ++ I+L
Sbjct: 116 MSKPAHASYVAVGDVIKVDLAIPGCPPSPETIVKVIIL 153
>gi|108708858|gb|ABF96653.1| NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor, putative [Oryza sativa Japonica Group]
Length = 86
Score = 73.9 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 37/56 (66%), Positives = 40/56 (71%)
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
MTFGLAC AVEMM A RYD +RFG SPRQSD MI+ GTLTNKM ALR+
Sbjct: 1 MTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKMVPALRKA 56
>gi|164513238|emb|CAP11712.1| NADH dehydrogenase subunit K [Aglaia korthalsii]
gi|164513240|emb|CAP11713.1| NADH dehydrogenase subunit K [Aglaia odoratissima]
Length = 60
Score = 73.9 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
+E R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+M
Sbjct: 1 IEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAM 60
>gi|261403395|ref|YP_003247619.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus
vulcanius M7]
gi|261370388|gb|ACX73137.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus
vulcanius M7]
Length = 227
Score = 72.3 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
+ D+ +V G++ +L + + + V+++G+CA GG YS +S
Sbjct: 49 ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYSKGNQLSKPVHSS 108
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGI 170
++ VD+ +PGCPP+ EA++ I
Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIVDVI 136
>gi|297619116|ref|YP_003707221.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus voltae A3]
gi|297378093|gb|ADI36248.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus voltae A3]
Length = 242
Score = 72.0 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--------- 134
R P D+ +V G++ A+ + + V+++G+CA GG
Sbjct: 56 LIERKIPENIDIALVEGSVCLDDHHAMDDILTTRKNSKIVVALGACAASGGVTRFARGGQ 115
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
S++ ++ VD+ +PGCPP+ E+++ I +
Sbjct: 116 MSQPSHASFAPIGDVIKVDLALPGCPPSPESIVNLITAALE 156
>gi|222625140|gb|EEE59272.1| hypothetical protein OsJ_11297 [Oryza sativa Japonica Group]
Length = 89
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 38/64 (59%), Positives = 41/64 (64%)
Query: 58 MTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
MTFGLAC AVEMM A RYD +RFG SPRQSD MI+ GTLTNKM ALR+
Sbjct: 1 MTFGLACFAVEMMHAGASRYDFDRFGVIFHPSPRQSDCMIITGTLTNKMVPALRKSVHLP 60
Query: 118 PEPR 121
P
Sbjct: 61 PLGC 64
>gi|164513242|emb|CAP11714.1| NADH dehydrogenase subunit K [Begonia conchifolia]
gi|164513244|emb|CAP11715.1| NADH dehydrogenase subunit K [Begonia plagioneura]
Length = 56
Score = 71.6 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 31/56 (55%), Positives = 45/56 (80%)
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
R+D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QMPEP+YVI+MG
Sbjct: 1 LIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVIAMG 56
>gi|73667997|ref|YP_304012.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina
barkeri str. Fusaro]
gi|72395159|gb|AAZ69432.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina
barkeri str. Fusaro]
Length = 293
Score = 70.8 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
+ DV +V G++ + ++ + + + + V+++GSCA G +S +
Sbjct: 87 EMDVALVEGSVCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHNQPQHES 146
Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
++ VD+Y+PGCPP+ E +
Sbjct: 147 YLPIGDLIDVDVYIPGCPPSPELI 170
>gi|164513254|emb|CAP11720.1| NADH dehydrogenase subunit K [Dioscorea bulbifera]
gi|164513256|emb|CAP11721.1| NADH dehydrogenase subunit K [Dioscorea schimperiana]
Length = 52
Score = 70.4 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 44/52 (84%)
Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
D +R+G PR+SPRQ+D+++ AGT+T KMA +L R+Y+QM EP+YVI+MG+C
Sbjct: 1 DFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMAEPKYVIAMGAC 52
>gi|134045688|ref|YP_001097174.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
maripaludis C5]
gi|132663313|gb|ABO34959.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanococcus
maripaludis C5]
Length = 242
Score = 70.4 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY----- 138
R P D+ +V G++ ++ + + V+++G+CA GG +
Sbjct: 56 LIERKIPEDIDIALVEGSVCLDDHHSVEDILTTRKNSKIVVALGACAASGGVTRFGRGNQ 115
Query: 139 ----SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
S++ ++ VD+ +PGCPP+ E+++ I+
Sbjct: 116 MPQPSHASFVPIGDVIKVDLALPGCPPSPESIVNLIMAALN 156
>gi|85682156|sp|P80491|FRHG_METBF RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName:
Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
subunit gamma; Short=FRH
gi|2463281|emb|CAA74092.1| F420-reducing hydrogenase isoenzyme II gamma subunit
[Methanosarcina barkeri]
Length = 259
Score = 70.0 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
+ DV +V G++ + ++ + + + + V+++GSCA G +S +
Sbjct: 53 EMDVALVEGSVCLQDHESVEDIKETRKKSKIVVALGSCACYGNITRFSRGGQHNQPQHES 112
Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
++ VD+Y+PGCPP+ E +
Sbjct: 113 YLPIGDLIDVDVYIPGCPPSPELI 136
>gi|1396038|dbj|BAA07792.1| ndhK [Anthoceros formosae]
Length = 80
Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 9 KIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVE 68
K ++ +S + ++ S + E T ++T+ + WAR SL + +G +CC +E
Sbjct: 6 KYLNFESDLAESVTNSMDSSLPDETTSDSTILTTFNDFSNWARLSSLWPLLYGTSCCFIE 65
Query: 69 MMQASMPRYDLERFG 83
R+D +R+G
Sbjct: 66 FASLIGSRFDFDRYG 80
>gi|256811180|ref|YP_003128549.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus
fervens AG86]
gi|256794380|gb|ACV25049.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus
fervens AG86]
Length = 227
Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
+ D+ +V G++ +L + + + V+++G+CA GG Y +S
Sbjct: 49 ECDIALVEGSVCLDDHHSLEVAEEVRKKAKIVVALGACAATGGVTRYCKGNQMSKPVHSS 108
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGI 170
++ VD+ +PGCPP+ EA++ I
Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIVSVI 136
>gi|332278363|ref|ZP_08390776.1| LOW QUALITY PROTEIN: hydrogenase 4 Fe-S subunit [Shigella sp. D9]
gi|332100715|gb|EGJ04061.1| LOW QUALITY PROTEIN: hydrogenase 4 Fe-S subunit [Shigella sp. D9]
Length = 149
Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKI 177
+H YSV G D IVP+D+++PGCPPT A I+G LLQ+KI
Sbjct: 14 IFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 60
>gi|15668201|ref|NP_246994.1| coenzyme F420-reducing hydrogenase subunit gamma
[Methanocaldococcus jannaschii DSM 2661]
gi|2494431|sp|Q60340|FRHG_METJA RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName:
Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
subunit gamma; Short=FRH
gi|1590833|gb|AAB98010.1| coenzyme F420-reducing hydrogenase, gamma subunit
[Methanocaldococcus jannaschii DSM 2661]
Length = 230
Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
+ D+ +V G++ +L + + + V+++G+CA GG Y +S
Sbjct: 52 ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYCKGNQLSKPVHSS 111
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167
++ VD+ +PGCPP+ EA++
Sbjct: 112 FSPLTEVIKVDLAIPGCPPSPEAIV 136
>gi|300951809|ref|ZP_07165623.1| conserved domain protein [Escherichia coli MS 116-1]
gi|300448972|gb|EFK12592.1| conserved domain protein [Escherichia coli MS 116-1]
Length = 136
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKI 177
+H YSV G D IVP+D+++PGCPPT A I+G LLQ+KI
Sbjct: 1 IFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 47
>gi|289192424|ref|YP_003458365.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus sp.
FS406-22]
gi|288938874|gb|ADC69629.1| coenzyme F420 hydrogenase, subunit gamma [Methanocaldococcus sp.
FS406-22]
Length = 227
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
+ D+ +V G++ +L + + + V+++G+CA GG Y +S
Sbjct: 49 ECDIALVEGSVCLDDHHSLEVAQEVRKKAKIVVALGACAATGGVTRYCKGNQLSKPVHSS 108
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALI 167
++ VD+ +PGCPP+ EA++
Sbjct: 109 FSPLTEVIKVDLAIPGCPPSPEAIV 133
>gi|303254845|ref|ZP_07340933.1| formate hydrogenlyase, subunit G [Streptococcus pneumoniae BS455]
gi|302598192|gb|EFL65250.1| formate hydrogenlyase, subunit G [Streptococcus pneumoniae BS455]
Length = 106
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 21 KVDADFSRISSEIT-HKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYD 78
++ + IS+ + + L R+ + + G C +E+ P +D
Sbjct: 4 QIPMPVNGISTPFSVDENIAKMKQTLLKNIQRSAYVYRVDCGGCNGCEIEIFSTITPTFD 63
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR 121
ERFG ASPR +D+++ G +T M + R Y P+P+
Sbjct: 64 AERFGIKVVASPRHADILLFTGAVTRAMRTPAMRAYQAAPDPK 106
>gi|323159342|gb|EFZ45327.1| hydrogenase-4 component I [Escherichia coli E128010]
Length = 142
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKI 177
+H YSV G D IVP+D+++PGCPPT A I+G LLQ+KI
Sbjct: 7 IFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 53
>gi|300820846|ref|ZP_07100996.1| conserved domain protein [Escherichia coli MS 119-7]
gi|300526599|gb|EFK47668.1| conserved domain protein [Escherichia coli MS 119-7]
Length = 142
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIL----LLQKKI 177
+H YSV G D IVP+D+++PGCPPT A I+G LLQ+KI
Sbjct: 7 IFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 53
>gi|315079804|gb|EFT51780.1| NADH ubiquinone oxidoreductase, subunit [Propionibacterium acnes
HL078PA1]
Length = 132
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 45 QLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN 104
+ + W GS+ + LACC VE A + + P +P V++V+GT+T
Sbjct: 2 KFIDWFADGSVYVVDLALACCGVESGAAVLANAPVRE--EIPDGAPI---VVLVSGTVTT 56
Query: 105 KMASALRRVYDQMP--EPRYVISMGSCANGGGYYHYSYSVVRGC-DRIVPVDIYVPGCPP 161
+A + ++ P V + G+CA GG Y S VV G D V D ++PGCPP
Sbjct: 57 GLAPVVSDTVHELKRNHPVDVAAFGACACAGGPYWDSAGVVAGLPDAGVDADHWIPGCPP 116
Query: 162 TAEAL 166
E L
Sbjct: 117 GPETL 121
>gi|20089854|ref|NP_615929.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina
acetivorans C2A]
gi|19914803|gb|AAM04409.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina
acetivorans C2A]
Length = 262
Score = 68.1 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
+ DV +V G++ + ++ + + + R V+++GSCA G + +
Sbjct: 62 EMDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCATYGNITRFCRGGQHNQPQHES 121
Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
++ VD+Y+PGCPP+ E +
Sbjct: 122 FLPIGDLIDVDVYIPGCPPSPELI 145
>gi|156742696|ref|YP_001432825.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
castenholzii DSM 13941]
gi|156234024|gb|ABU58807.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
castenholzii DSM 13941]
Length = 125
Score = 68.1 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
C +EM+ A D A SP ++DV+++ G LT+ +AL + ++
Sbjct: 15 SCGGCDLEMIAAISETAD-----IAWATSPHEADVLLITGPLTHSAKTALVALMQELAHQ 69
Query: 121 RYVISMGSCANGGGYYHYSYSV-VRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
++++G CA G + V G V VD GCPP +I I
Sbjct: 70 PPLLAIGRCAIDGHPFGRGGLTSVAGLTMQVSVD----GCPPEHARIIESIR 117
>gi|73669778|ref|YP_305793.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina
barkeri str. Fusaro]
gi|72396940|gb|AAZ71213.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina
barkeri str. Fusaro]
Length = 274
Score = 67.7 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
+ DV +V G++ + ++ + + + R V+++GSCA+ G + +
Sbjct: 68 EMDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCASYGNITRFCRGGQHNHPQHES 127
Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
++ VD+Y+PGCPP+ E +
Sbjct: 128 YLPIGDLIDVDVYIPGCPPSPELI 151
>gi|21229145|ref|NP_635067.1| coenzyme F420 hydrogenase subunit gamma [Methanosarcina mazei Go1]
gi|20907707|gb|AAM32739.1| Coenzyme F420 hydrogenase, gamma subunit [Methanosarcina mazei Go1]
Length = 287
Score = 67.3 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
+ DV +V G++ + ++ + + + + V+++GSCA G +S +
Sbjct: 87 EMDVALVEGSVCIQDHESVEEIRETREKAKIVVALGSCACYGNITRFSRGGQHNQPQHES 146
Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
++ VD+Y+PGCPP+ E +
Sbjct: 147 FLPIGDLIDVDVYIPGCPPSPELI 170
>gi|2463276|emb|CAA74096.1| F420-reducing hydrogenase isoenzyme I gamma subunit [Methanosarcina
barkeri]
Length = 259
Score = 67.3 bits (163), Expect = 9e-10, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
+ DV +V G++ + ++ + + + R V+++GSCA+ G + +
Sbjct: 53 EMDVALVEGSVCIQDRESVEDIKETRKKSRIVVALGSCASYGNITRFCRGGQHNHPQHES 112
Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
++ VD+Y+PGCPP+ E +
Sbjct: 113 YLPIGDLIDVDVYIPGCPPSPELI 136
>gi|29565659|ref|NP_817241.1| NADH dehydrogenase subunit K [Pinus koraiensis]
gi|29469758|gb|AAO74086.1| ORF82a [Pinus koraiensis]
Length = 82
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 129 CANGGGYYH-------YSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
C+ G Y+ SYS V D+++PVD+Y P CP E +I I L+++
Sbjct: 21 CSCPGSMYYHIEMFGTDSYSTVHEVDKLIPVDVYSPDCPTEPEVIIDAITKLRER 75
>gi|149377240|ref|ZP_01894987.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893]
gi|149358428|gb|EDM46903.1| NADH dehydrogenase subunit B [Marinobacter algicola DG893]
Length = 81
Score = 67.0 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 18 SLEKVDADFSRISSEITHKGFLVTSVDQL----VTWARTGSLMWMTFGLACCAVEMMQAS 73
+ + + + ++ + + + V W R SL FGL+CC VEM A
Sbjct: 13 PIRQQEPSEDPVKRQL-ERNVFTGKLSDVLNSAVNWGRKNSLWPYNFGLSCCYVEMTTAF 71
Query: 74 MPRYDLERFG 83
+D+ RFG
Sbjct: 72 TAPHDIARFG 81
>gi|84490092|ref|YP_448324.1| FrhG [Methanosphaera stadtmanae DSM 3091]
gi|84373411|gb|ABC57681.1| FrhG [Methanosphaera stadtmanae DSM 3091]
Length = 256
Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--YYHYSYSVVR 144
+ D++++ G++ + +L+ + + + + ++++GSCA GG Y +
Sbjct: 71 VWEMPEMDLVLIEGSVCLEDKHSLKELKEARSKSKLLVALGSCAATGGFTVYAKGGQQAQ 130
Query: 145 G-------CDRIVPVDIYVPGCPPTAEALIYGILL 172
IV VD+ VPGCPP+ + +I ILL
Sbjct: 131 PQHSSFLALQNIVKVDLAVPGCPPSPD-IIKKILL 164
>gi|296109198|ref|YP_003616147.1| hypothetical protein Metin_0513 [Methanocaldococcus infernus ME]
gi|295434012|gb|ADG13183.1| hypothetical protein Metin_0513 [Methanocaldococcus infernus ME]
Length = 226
Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSY---------S 141
++ DV +V G++ + AL + + + V+++G+CA GG Y S
Sbjct: 48 KECDVALVEGSVCLEDHHALEVAKEVREKAKIVVALGACAAFGGLTRYCKGNQLPKPVNS 107
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEAL---IYGIL 171
++ VD +PGCPP+ EA+ I +L
Sbjct: 108 SFSPLTEVIKVDYSIPGCPPSPEAIYSFIKALL 140
>gi|45358381|ref|NP_987938.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
maripaludis S2]
gi|44921139|emb|CAF30374.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
maripaludis S2]
Length = 242
Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--------- 134
R P D+ +V G++ ++ + + V+++G+CA GG
Sbjct: 56 LIERKIPENIDIALVEGSVCLDDHHSVEDILTTRKNSKIVVALGACAASGGVTRFGRGGQ 115
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
S+S ++ VD+ +PGCPP+ E+++ I+
Sbjct: 116 MSQPSHSSFVPIGDVIKVDLALPGCPPSTESIVNLIMAALN 156
>gi|150398834|ref|YP_001322601.1| coenzyme F420 hydrogenase [Methanococcus vannielii SB]
gi|150011537|gb|ABR53989.1| Coenzyme F420 hydrogenase [Methanococcus vannielii SB]
Length = 242
Score = 65.8 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--------- 134
R P D+ +V G++ +L + + V+++G+CA GG
Sbjct: 56 LIERKIPENIDIALVEGSVCLDDHHSLDDILTTRKNSKIVVALGACAASGGVTRFARGGQ 115
Query: 135 YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
S+S ++ VD+ +PGCPP+ E+++ I+
Sbjct: 116 MSQPSHSAFVPIGDVIKVDLALPGCPPSTESIVNLIMAALN 156
>gi|213028132|ref|ZP_03342579.1| formate hydrogenlyase, subunit G [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 102
Score = 64.6 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKNIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRVYD 115
+D+++ G +T M S R +
Sbjct: 78 HADILLFTGAVTRAMRSPALRAWQ 101
>gi|15679300|ref|NP_276417.1| coenzyme F420-reducing hydrogenase, gamma subunit
[Methanothermobacter thermautotrophicus str. Delta H]
gi|2622405|gb|AAB85778.1| coenzyme F420-reducing hydrogenase, gamma subunit
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 275
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-------- 139
+ D+ +V G++ + +L + + + + V + GSCA G + YS
Sbjct: 91 WEMPEMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQP 150
Query: 140 -YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ ++ VD+ +PGCPP+ E + ++ L
Sbjct: 151 SHESFVPIADLIDVDLAIPGCPPSPEIIAKAVVALLN 187
>gi|3334464|sp|P19498|FRHG_METTH RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName:
Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
subunit gamma; Short=FRH
Length = 236
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-------- 139
+ D+ +V G++ + +L + + + + V + GSCA G + YS
Sbjct: 52 WEMPEMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQP 111
Query: 140 -YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ ++ VD+ +PGCPP+ E + ++ L
Sbjct: 112 SHESFVPIADLIDVDLAIPGCPPSPEIIAKAVVALLN 148
>gi|333001061|gb|EGK20631.1| formate hydrogenlyase subunit 7 [Shigella flexneri K-272]
Length = 128
Score = 64.3 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
G D+IVPVD+Y+PGCPPT A +YG + L++KI G
Sbjct: 2 WGGTDKIVPVDVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 44
>gi|45358947|ref|NP_988504.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
maripaludis S2]
gi|45047813|emb|CAF30940.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
maripaludis S2]
Length = 228
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 19/132 (14%)
Query: 63 ACCAVEMMQASMPRYDLERFGFA----------PRASPRQSDVMIVAGTLTNKMASALRR 112
+CC + A L+ G R P D++++ G++ A+
Sbjct: 11 SCCGCLVSLADTYEQLLDVLGAIDLVYSQTLADVREIPDDVDIVLLEGSVCLSDHHAMEV 70
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVRGCDRIVPVDIYVPGCPPTA 163
+ + + ++++G+CA G +S + +V D+ +PGCPP+
Sbjct: 71 ALESRKKGKILVALGACAASGNITRFSKGNQPSKPVHDSFAPLTEVVKCDLAIPGCPPSP 130
Query: 164 EALIYGILLLQK 175
E+++ +L
Sbjct: 131 ESIVAVVLAALN 142
>gi|149717|gb|AAA72189.1| F420 hydrogenase gamma-subuint (frhG) [Methanothermobacter
thermautotrophicus]
Length = 236
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-------- 139
+ D+ +V G++ + +L + + + + V + GSCA G + YS
Sbjct: 52 WEMPEMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAQTGCFTRYSRGGQQAQP 111
Query: 140 -YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ ++ VD+ +PGCPP+ E + ++ L
Sbjct: 112 SHESFVPIADLIDVDLAIPGCPPSPEIIAKAVVALLN 148
>gi|303243618|ref|ZP_07329960.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
gi|302486179|gb|EFL49101.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
Length = 145
Score = 63.5 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
++D++++ G++ A+ + + + ++++G+CA GG +S +
Sbjct: 49 EADIVLLEGSVCLDDHHAMEVAQEARKKGKILVALGACAATGGVTRFSRGGQMSKPVHGS 108
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+V D+ +PGCPP+ E ++ +L
Sbjct: 109 FSPLTEVVKCDLAIPGCPPSPEIIVNVVLAALN 141
>gi|297725319|ref|NP_001175023.1| Os07g0116900 [Oryza sativa Japonica Group]
gi|255677459|dbj|BAH93751.1| Os07g0116900 [Oryza sativa Japonica Group]
Length = 114
Score = 63.1 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 34/53 (64%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
LA CAVEMM A YD +RF R SPRQSD MI+ GTLTNKM AL +
Sbjct: 57 DLAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPALGKT 109
>gi|150401467|ref|YP_001325233.1| coenzyme F420 hydrogenase [Methanococcus aeolicus Nankai-3]
gi|150014170|gb|ABR56621.1| Coenzyme F420 hydrogenase [Methanococcus aeolicus Nankai-3]
Length = 227
Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
++D+++V G++ A+ D + + ++++G+CA GG + +S
Sbjct: 49 EADIILVEGSVCLDDHHAMEIAQDVGKKAKILVALGACAATGGITRFCRGGQMSKPIHSS 108
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
+V D+ +PGCPP+ E +I G++
Sbjct: 109 FSPITEVVKCDLAIPGCPPSPE-IIVGLIT 137
>gi|150399445|ref|YP_001323212.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
vannielii SB]
gi|150012148|gb|ABR54600.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
vannielii SB]
Length = 228
Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 19/132 (14%)
Query: 63 ACCAVEMMQASMPRYDLERFGFA----------PRASPRQSDVMIVAGTLTNKMASALRR 112
+CC + A L+ G + P D++++ G++ AL
Sbjct: 11 SCCGCLVSLADTYEKLLDVLGAIELVYSQTLADVKEVPDNVDIILLEGSVCLSDHHALEV 70
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVRGCDRIVPVDIYVPGCPPTA 163
+ + + ++++G+CA G + + +V D+ +PGCPP+
Sbjct: 71 ALESRKKAKILVALGACAASGNITRFCKGNQMSKPIHDSFAPLTEVVKCDLAIPGCPPSP 130
Query: 164 EALIYGILLLQK 175
EA++ I K
Sbjct: 131 EAIVAVIEAALK 142
>gi|297619514|ref|YP_003707619.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus voltae A3]
gi|297378491|gb|ADI36646.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus voltae A3]
Length = 228
Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 49/132 (37%), Gaps = 19/132 (14%)
Query: 63 ACCAVEMMQASMPRYDLERFGFA----------PRASPRQSDVMIVAGTLTNKMASALRR 112
+CC + L+ G R P D++++ G++ AL
Sbjct: 11 SCCGCLVSLTDTYEKLLDVLGAIDLVYSQTLADVREVPDDVDIILLEGSVCINDHHALET 70
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVRGCDRIVPVDIYVPGCPPTA 163
+ + ++++G+CA G +S + +V D+ +PGCPP+
Sbjct: 71 ALACRKKAKILVALGACAASGNITRFSRGGQMSKPVHDAFAPLTEVVKCDLAIPGCPPSP 130
Query: 164 EALIYGILLLQK 175
E ++ I +
Sbjct: 131 EIIVAVITAALE 142
>gi|240102125|ref|YP_002958433.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus
gammatolerans EJ3]
gi|239909678|gb|ACS32569.1| Coenzyme F420 hydrogenase subunit gamma (frhG) [Thermococcus
gammatolerans EJ3]
Length = 229
Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS- 139
R G + DV ++ G L + + + R V++ GSCA+ GG ++
Sbjct: 43 RDGSCQYG---EYDVALITGGACMNEPRILEELKEIREKARVVVAFGSCASLGGILRFAR 99
Query: 140 --------YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
+ + + ++PVD +PGCPPT + L
Sbjct: 100 GGQEPRPDHRNFQPINSVIPVDYSIPGCPPTPQML 134
>gi|44707|emb|CAA43502.1| F420-reducing hydrogenase subunit [Methanococcus voltae PS]
Length = 228
Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 19/132 (14%)
Query: 63 ACCAVEMMQASMPRYDLERFGFA----------PRASPRQSDVMIVAGTLTNKMASALRR 112
+CC + L+ G R P D++++ G++ AL
Sbjct: 11 SCCGCLVSLTDTYEKLLDVLGAIDLVYSQTLADVREVPDDVDIILLEGSVCLSDHHALET 70
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVRGCDRIVPVDIYVPGCPPTA 163
+ + ++++G+CA G +S + +V D+ +PGCPP+
Sbjct: 71 ALACREKAKILVALGACAASGNITRFSRGGQMSKPVHDAFAPLTEVVKCDLAIPGCPPSP 130
Query: 164 EALIYGILLLQK 175
E+++ I +
Sbjct: 131 ESIVAVITAALE 142
>gi|125557036|gb|EAZ02572.1| hypothetical protein OsI_24684 [Oryza sativa Indica Group]
gi|125598924|gb|EAZ38500.1| hypothetical protein OsJ_22886 [Oryza sativa Japonica Group]
Length = 135
Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/50 (62%), Positives = 33/50 (66%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASAL 110
LA CAVEMM A YD +RF R SPRQSD MI+ GTLTNKM AL
Sbjct: 57 DLAYCAVEMMHAGASCYDFDRFRVIFRPSPRQSDCMIIVGTLTNKMGPAL 106
>gi|282165081|ref|YP_003357466.1| coenzyme F420 hydrogenase subunit gamma [Methanocella paludicola
SANAE]
gi|282157395|dbj|BAI62483.1| coenzyme F420 hydrogenase subunit gamma [Methanocella paludicola
SANAE]
Length = 232
Score = 62.3 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVV 143
D+ IV G + + ++ + + + V++ G C+ G ++S +
Sbjct: 54 VDIAIVEGGVCLQDEESVHLIKETREKAGLVVAYGGCSATGNVLNFSRGGQWNQPQHESF 113
Query: 144 RGCDRIVPVDIYVPGCPPTAEAL 166
+R++ VD Y+PGCPP E +
Sbjct: 114 VPINRLIKVDAYIPGCPPAPEVI 136
>gi|312137254|ref|YP_004004591.1| coenzyme f420-reducing hydrogenase, gamma subunit [Methanothermus
fervidus DSM 2088]
gi|311224973|gb|ADP77829.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanothermus
fervidus DSM 2088]
Length = 254
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY-------- 138
+ D+ +V G++ + ++ + + + + ++GSCA GG+ Y
Sbjct: 69 VWEMPEMDLALVEGSVCIQDEHSVEELMEAREKADLLCALGSCAMTGGFTRYARGGQQAQ 128
Query: 139 -SYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
S+ +V VD+ +PGCPP+ E +
Sbjct: 129 PSHESFLPISELVKVDLAIPGCPPSPEII 157
>gi|150402553|ref|YP_001329847.1| coenzyme F420 hydrogenase [Methanococcus maripaludis C7]
gi|159905672|ref|YP_001549334.1| coenzyme F420 hydrogenase subunit gamma [Methanococcus maripaludis
C6]
gi|150033583|gb|ABR65696.1| Coenzyme F420 hydrogenase [Methanococcus maripaludis C7]
gi|159887165|gb|ABX02102.1| coenzyme F420 hydrogenase, subunit gamma [Methanococcus maripaludis
C6]
Length = 228
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 19/132 (14%)
Query: 63 ACCAVEMMQASMPRYDLERFGFA----------PRASPRQSDVMIVAGTLTNKMASALRR 112
+CC + A L+ G R P D++++ G++ A+
Sbjct: 11 SCCGCLVSLADTYEKLLDVLGAIDLVYSQTLADVREVPDDVDIILLEGSVCLSDHHAMEV 70
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVRGCDRIVPVDIYVPGCPPTA 163
D + + ++++G+CA G +S + +V D+ +PGCPP+
Sbjct: 71 ALDSRKKAKILVALGACAATGNVTRFSKGNQPSKPVHDAFAPLTEVVKCDLAIPGCPPSP 130
Query: 164 EALIYGILLLQK 175
E+++ +L
Sbjct: 131 ESIVAVVLAALN 142
>gi|134045239|ref|YP_001096725.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanococcus
maripaludis C5]
gi|132662864|gb|ABO34510.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanococcus
maripaludis C5]
Length = 228
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 19/132 (14%)
Query: 63 ACCAVEMMQASMPRYDLERFGFA----------PRASPRQSDVMIVAGTLTNKMASALRR 112
+CC + A L+ G R P D++++ G++ A+
Sbjct: 11 SCCGCLVSLADTYEKLLDVLGAIDLVYSQTLADVREVPDDVDIILLEGSVCLSDHHAMEV 70
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVRGCDRIVPVDIYVPGCPPTA 163
D + + ++++G+CA G +S + +V D+ +PGCPP+
Sbjct: 71 ALDSRKKAKILVALGACAATGNVTRFSKGNQPSKPVHDAFAPLTEVVKCDLAIPGCPPSP 130
Query: 164 EALIYGILLLQK 175
E+++ +L
Sbjct: 131 ESIVAVVLAALN 142
>gi|147919453|ref|YP_686807.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured
methanogenic archaeon RC-I]
gi|110622203|emb|CAJ37481.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured
methanogenic archaeon RC-I]
Length = 233
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRG------ 145
D+ IV G++ + ++ + + + V+++G CA G + +
Sbjct: 55 DISIVEGSVCLQDEHSVHLIKEAREKSGLVVALGGCAATGCVCNFCRGGQANQPQHESFV 114
Query: 146 -CDRIVPVDIYVPGCPPTAEAL 166
+++V VD Y+PGCPP E +
Sbjct: 115 PINKLVKVDAYIPGCPPAPEVI 136
>gi|289192300|ref|YP_003458241.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
sp. FS406-22]
gi|288938750|gb|ADC69505.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
sp. FS406-22]
Length = 285
Score = 61.2 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 34/118 (28%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YH 137
P DV +V G + N+ L +++ + + VI+ G+CA GG +
Sbjct: 49 PEGIDVFLVEGGIRNEHDEHL--IHEIREKSKIVIAWGTCAAYGGIPGLGNLYTKEELLN 106
Query: 138 YSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
Y YS V+ +V VD +PGCPPT E + I+ L K
Sbjct: 107 YVYSTDSTDNKGEIPSEDIPPLEDYVKPISAVVKVDYVIPGCPPTPEMIADAIVALLK 164
>gi|148656787|ref|YP_001276992.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp.
RS-1]
gi|148568897|gb|ABQ91042.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp.
RS-1]
Length = 127
Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDR 148
+P ++DV+++ G LT A + ++ +I++G CA G + G
Sbjct: 34 TPHEADVLLLTGPLTTDTKKAFMALLQELDHRAPIIAVGRCAIDGHPFGR-----GGV-A 87
Query: 149 IVP---VDIYVPGCPPTAEALIYGILLL 173
++P V + + GCPPT ++ I +
Sbjct: 88 VIPNLTVHLSLDGCPPTPTQIVEAIRTI 115
>gi|325957978|ref|YP_004289444.1| coenzyme F420 hydrogenase subunit gamma [Methanobacterium sp.
AL-21]
gi|325329410|gb|ADZ08472.1| coenzyme F420 hydrogenase, subunit gamma [Methanobacterium sp.
AL-21]
Length = 261
Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------- 139
+ D+++V G++ + +++ + + + V++ GSCA G + YS
Sbjct: 76 VWEMPEMDLVLVEGSVCLQDEHSVKELKEAREKAGLVVAFGSCAATGCFTRYSRGGQQAR 135
Query: 140 --YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
+ +V VD +PGCPP+ E +
Sbjct: 136 PDHESFVPIADLVKVDCAIPGCPPSPEII 164
>gi|219850771|ref|YP_002465203.1| coenzyme F420 hydrogenase, subunit gamma [Methanosphaerula
palustris E1-9c]
gi|219545030|gb|ACL15480.1| coenzyme F420 hydrogenase, subunit gamma [Methanosphaerula
palustris E1-9c]
Length = 253
Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
+ DV +V G++ + +A+ + + + V+++G CA G +S +
Sbjct: 53 EMDVALVEGSVCLQDKTAVEEIKETRERAKIVVALGGCACYGNITRFSRGGQQNQPQHES 112
Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
++ VD+Y+PGC PT + +
Sbjct: 113 YLPIGDLIDVDVYIPGCAPTPQMI 136
>gi|224368286|ref|YP_002602449.1| MvhG [Desulfobacterium autotrophicum HRM2]
gi|223691002|gb|ACN14285.1| MvhG [Desulfobacterium autotrophicum HRM2]
Length = 313
Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 34/129 (26%)
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--- 135
L + G ++ V +V+G + + L + + VI++G+CA GG
Sbjct: 48 LGQLGDKQHIDIPKATVGLVSGGI--RNEEHLEVAMEMRKKCDIVIALGTCATHGGIPAL 105
Query: 136 ---------YHYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEAL 166
+ Y+ D + VDIY+PGCPP + +
Sbjct: 106 INSVTNEELFDRYYATESTDSGAQVPTKGISPLLDRCYALDEHIKVDIYLPGCPPHPDQI 165
Query: 167 IYGILLLQK 175
IL L
Sbjct: 166 ATAILALLN 174
>gi|304315421|ref|YP_003850568.1| F420-reducing hydrogenase, subunit gamma [Methanothermobacter
marburgensis str. Marburg]
gi|302588880|gb|ADL59255.1| F420-reducing hydrogenase, subunit gamma [Methanothermobacter
marburgensis str. Marburg]
Length = 275
Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 9/97 (9%)
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-------- 139
+ D+ +V G++ + +L + + + + V + GSCA G + YS
Sbjct: 91 WEMPEMDLALVEGSVCLQDEHSLHELKELREKAKLVCAFGSCAATGCFTRYSRGGQQAQP 150
Query: 140 -YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ ++ VD+ +PGCPP+ E + ++ L
Sbjct: 151 SHESFVPIADLIDVDLALPGCPPSPEIIAKTVVALLN 187
>gi|154150020|ref|YP_001403638.1| coenzyme F420 hydrogenase [Candidatus Methanoregula boonei 6A8]
gi|153998572|gb|ABS54995.1| Coenzyme F420 hydrogenase [Methanoregula boonei 6A8]
Length = 252
Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 37/87 (42%), Gaps = 9/87 (10%)
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--------- 139
++ DV V G++ A+ + + + V+++G CA G +
Sbjct: 50 HIQKVDVSFVEGSVCINDKLAVEEIKETREKSAVVVALGGCACYGNITRFCRGGQQNQPA 109
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
+ ++ VD+++PGC PT + +
Sbjct: 110 HEAFLPIGDLIKVDVFIPGCAPTPQMI 136
>gi|207094125|ref|ZP_03241912.1| NADH dehydrogenase subunit B [Helicobacter pylori HPKX_438_AG0C1]
Length = 35
Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
Y+ V+G DR+VPVDIY+PGC P +E L Y +++LQ
Sbjct: 1 YATVQGADRVVPVDIYLPGCAPRSETLQYALMVLQ 35
>gi|333001062|gb|EGK20632.1| ech hydrogenase subunit C [Shigella flexneri K-272]
gi|333015433|gb|EGK34772.1| ech hydrogenase subunit C [Shigella flexneri K-227]
Length = 99
Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTLTNKMASALRRV 113
+D+++ G +T M S R
Sbjct: 78 HADILLFTGAVTRAMRSPALRA 99
>gi|19698436|gb|AAL93146.1| NADH-ubiquinone oxidoreductase [Lupinus luteus]
Length = 94
Score = 58.1 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
F+++ VD L+ WAR GS+ MTFGLACCAVEMM
Sbjct: 61 EFVISKVDDLMNWARRGSIWPMTFGLACCAVEMM 94
>gi|256810209|ref|YP_003127578.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
fervens AG86]
gi|256793409|gb|ACV24078.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
fervens AG86]
Length = 288
Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 46/122 (37%), Gaps = 34/122 (27%)
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------- 134
P+ P DV +V G + N+ L +++ + + VI+ GSCA GG
Sbjct: 48 PKEIPEGIDVFLVEGGIRNEHDEHL--IHEIREKSKIVIAWGSCAAFGGIPGLANLYTKE 105
Query: 135 -YYHYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
+ YS V+ V VD +PGCPPT E + I+ L
Sbjct: 106 EILNTVYSTDSTENKGEIPSEEVPPLEEYVKPISDFVKVDYVIPGCPPTPEMIASAIVAL 165
Query: 174 QK 175
Sbjct: 166 LN 167
>gi|261403598|ref|YP_003247822.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
vulcanius M7]
gi|261370591|gb|ACX73340.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
vulcanius M7]
Length = 288
Score = 57.7 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 34/122 (27%)
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------- 135
P+ P DV +V G + N+ L +++ + + VI+ G+CA GG
Sbjct: 48 PKEIPEGIDVFLVEGGIRNEHDEHL--IHEIREKSKIVIAWGTCAAYGGIPGLGNLYKKE 105
Query: 136 --YHYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
+Y YS V+ + VD +PGCPPT + + I+ L
Sbjct: 106 ELLNYVYSTDSTENKGEIPSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIADAIIAL 165
Query: 174 QK 175
Sbjct: 166 LN 167
>gi|19698434|gb|AAL93145.1| NADH-ubiquinone oxidoreductase [Lupinus luteus]
Length = 92
Score = 57.7 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/34 (64%), Positives = 27/34 (79%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMM 70
F+++ VD L+ WAR GS+ MTFGLACCAVEMM
Sbjct: 59 EFVISKVDDLMNWARRGSIWPMTFGLACCAVEMM 92
>gi|294645801|ref|ZP_06723484.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
gi|292638814|gb|EFF57149.1| conserved domain protein [Bacteroides ovatus SD CC 2a]
Length = 71
Score = 57.7 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 23 DADFSRISSEITHKG--FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQA 72
+ ++ E+ G + +D + W R+ SL +TF +CC +E M
Sbjct: 20 NESLEKLVKELNAGGANVALGVLDDFINWGRSNSLWPLTFATSCCGIEFMAL 71
>gi|15669379|ref|NP_248186.1| methylviologen-reducing hydrogenase subunit VhuG
[Methanocaldococcus jannaschii DSM 2661]
gi|41018412|sp|Q58591|VHUG_METJA RecName: Full=F420-non-reducing hydrogenase vhu subunit G
gi|1591819|gb|AAB99193.1| methylviologen-reducing hydrogenase, gamma chain (vhuG)
[Methanocaldococcus jannaschii DSM 2661]
Length = 288
Score = 57.7 bits (138), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 34/122 (27%)
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------- 135
P+ P DV +V G + N+ L +++ + + VI+ G+CA GG
Sbjct: 48 PKEIPEGIDVFLVEGGIRNEHDEHL--IHEIREKSKIVIAWGTCAAYGGIPGLGNLYKKE 105
Query: 136 --YHYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
+Y YS V+ + VD +PGCPPT + + I+ L
Sbjct: 106 ELLNYVYSTDSTENKGEIPSEEIPPLEEYVKPIKDFIKVDYTIPGCPPTPKMIADAIIAL 165
Query: 174 QK 175
Sbjct: 166 LN 167
>gi|327399463|ref|YP_004340332.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hippea maritima DSM
10411]
gi|327182092|gb|AEA34273.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hippea maritima DSM
10411]
Length = 153
Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 14/113 (12%)
Query: 19 LEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC---CAVEMMQASMP 75
++++ F++ EI + SL +A +E+ P
Sbjct: 10 IQRITEKFNKTKEEIKSISPIFKK-----------SLHIFPIDVANDNRLNLEIAALQTP 58
Query: 76 RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
+Y++ RFG SPR +D+++V G + KM L+ +QMP+P ++ +
Sbjct: 59 QYNIHRFGIFFCDSPRHADLLLVLGKCSIKMIEPLKETVNQMPQPFGILVIED 111
>gi|298530301|ref|ZP_07017703.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509675|gb|EFI33579.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfonatronospira
thiodismutans ASO3-1]
Length = 312
Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 34/129 (26%)
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--- 135
+ G S ++ V IV+G + N+ + + + + + +I++G+CA GG
Sbjct: 50 FGQTGEEEHLSIPEAVVGIVSGGVRNEEHKEV--LLEMRKKCQILIALGTCATDGGIPAM 107
Query: 136 -------------YHYSYSV----------------VRGCDRIVPVDIYVPGCPPTAEAL 166
Y S + D +V VD+Y+PGCPP + +
Sbjct: 108 INMYSDEELKKFTYKDSPTTDPADYPTEHIPPLLDQCYALDELVKVDLYLPGCPPHPDWI 167
Query: 167 IYGILLLQK 175
+L L +
Sbjct: 168 AGAVLALLE 176
>gi|156741352|ref|YP_001431481.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
castenholzii DSM 13941]
gi|156232680|gb|ABU57463.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
castenholzii DSM 13941]
Length = 181
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 49/141 (34%), Gaps = 44/141 (31%)
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
A + P D++ + P DV +V G + N+ L R R +I+
Sbjct: 32 AQHIDLVYSPLADVKEY-------PDHVDVALVEGAVANEDHLHLIR--QVRERTRILIA 82
Query: 126 MGSCANGG---------------------------GYYHYSYSVV-------RGCDRIVP 151
G CA G G ++ +V + ++VP
Sbjct: 83 FGDCAVTGNVTALRNPLGAPEALLHTIYIERAEIAGCLPHAPGIVPQLLDKVQPVHKVVP 142
Query: 152 VDIYVPGCPPTAEALIYGILL 172
VD+Y+PGCPP I +L
Sbjct: 143 VDVYLPGCPP-PAPRIRALLE 162
>gi|116750141|ref|YP_846828.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116699205|gb|ABK18393.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 184
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 35/119 (29%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
P DV +V G N + ++ + VI+ G CA G
Sbjct: 54 PEGVDVTLVEGACCND--ENVHLAHEVRERSKIVIAFGDCAVTGNVPSMRNRLDRDQMIN 111
Query: 136 --YHYSY------SVVR-----------GCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
Y SV+ +++PVDI++PGCPP E + I+ L K
Sbjct: 112 SVYFEGPGKPPPTSVLGHFLPTLIPKVLPLHQVIPVDIFLPGCPPDPERIWAAIVALLK 170
>gi|158340824|ref|YP_001521992.1| Ni-Fe hydrogenase small subunit [Acaryochloris marina MBIC11017]
gi|158311065|gb|ABW32678.1| Ni-Fe hydrogenase small subunit [Acaryochloris marina MBIC11017]
Length = 181
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 52/143 (36%), Gaps = 58/143 (40%)
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN----KMASALRRVYDQMPEPRYVISMG 127
P D +++ P++ DV +V G + N +M +R +Y+I+ G
Sbjct: 38 VYSPFMDAKQY-------PQEVDVALVEGAIANTDHWEMIHQVRDC------TQYLIAFG 84
Query: 128 SCANGG-------------GYYHYSYSV---------------------VRGCDRIVPVD 153
CA G G SY V+ +VPVD
Sbjct: 85 DCAVTGNVTALRNLLGTAEGVLERSYINLADLVPQIPAEEAIVPPLLDWVKPVHTVVPVD 144
Query: 154 IYVPGCPPTA-------EALIYG 169
+Y+PGCPP+ EAL+ G
Sbjct: 145 LYLPGCPPSPSRIKFVLEALLQG 167
>gi|1706905|sp|Q00393|FRHG_METVO RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName:
Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
subunit gamma; Short=FRH
gi|809730|emb|CAA43498.1| F420-reducing hydrogenase subunit [Methanococcus voltae PS]
Length = 243
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/102 (18%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP-EPRYVISMGSCANGGG-------- 134
R P D+ +V G++ ++ + + ++++G+CA GG
Sbjct: 56 LIERDIPGGIDIALVEGSVCLDDHHSMDDILTTRKNSKKSLVALGACAASGGVTRFRRVG 115
Query: 135 -YYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
S++ ++ VD+ +PGCPP+ E+++ + +
Sbjct: 116 QMSQPSHASFVPIGDVIKVDLALPGCPPSTESIVKLLTAALE 157
>gi|212224711|ref|YP_002307947.1| Coenzyme F420 hydrogenase gamma subunit [Thermococcus onnurineus
NA1]
gi|212009668|gb|ACJ17050.1| Coenzyme F420 hydrogenase gamma subunit [Thermococcus onnurineus
NA1]
Length = 225
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
+ DV I+ G L + + + V++ GSCA G + +
Sbjct: 48 EYDVAIITGGACMNEPRILEELKEIREKAHTVVAFGSCATFSGILRFCRGGQEPRPDHRN 107
Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
+ + ++ VD +PGCPPT + L
Sbjct: 108 FQPINSVIKVDYSIPGCPPTPQML 131
>gi|189425848|ref|YP_001953025.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
SZ]
gi|189422107|gb|ACD96505.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
SZ]
Length = 179
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 40/119 (33%), Gaps = 35/119 (29%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YH 137
P DV ++ G + N L + + +IS G CA G
Sbjct: 49 PEGVDVALIEGAVANF--ENLELLQQIRNRSKLLISFGDCAITGNVTSLRNFFSVDDLLT 106
Query: 138 YSYSVVRG-------CDRIVP--------------VDIYVPGCPPTAEALIYGILLLQK 175
Y G D+++P VD Y+PGCPP E ++ + L K
Sbjct: 107 AVYHAGPGSAPRSDEADQVLPELLPRVLPLHQVVEVDAYIPGCPPDPERILAALTALLK 165
>gi|307352753|ref|YP_003893804.1| coenzyme F420 hydrogenase subunit gamma [Methanoplanus petrolearius
DSM 11571]
gi|307155986|gb|ADN35366.1| coenzyme F420 hydrogenase, subunit gamma [Methanoplanus
petrolearius DSM 11571]
Length = 314
Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSV 142
+ DV +V G++ + ++R + + + + V+++G CA G + +
Sbjct: 110 EMDVALVEGSVCLQDECSVREIKETREKAKVVVALGGCAAYGNITRFCRGGQWNQPQHES 169
Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
++ VD+Y+P CPP AEA+
Sbjct: 170 FVPIGDLIDVDVYLPSCPPGAEAI 193
>gi|217966523|ref|YP_002352029.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dictyoglomus
turgidum DSM 6724]
gi|217335622|gb|ACK41415.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dictyoglomus
turgidum DSM 6724]
Length = 180
Score = 55.0 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 47/164 (28%)
Query: 54 SLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASP--------RQSDVMIVAGTL-TN 104
S+ G + C + + +L G A+P ++D+ I+ G + T+
Sbjct: 8 SIWCE--GCSGCHMSFLDMDERLVELINKGLEINATPITDLKIPDEETDIGIIEGAVATD 65
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YHYSYSVVRG--- 145
++ + ++ ++++G CA GG Y + S V G
Sbjct: 66 HHEEEVKMMRERCK---IIVALGDCAVFGGIPTMRNYFSKEELLERGYITTESTVDGKIP 122
Query: 146 --------------CDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ ++ VD+Y+PGCPP+A+A+ Y + + +
Sbjct: 123 TSKEIGKHLPKTKAVNEVIKVDLYIPGCPPSADAIYYVLKEVLE 166
>gi|300903499|ref|ZP_07121424.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1]
gi|301302841|ref|ZP_07208969.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1]
gi|300404531|gb|EFJ88069.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 84-1]
gi|300841776|gb|EFK69536.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 124-1]
gi|315256505|gb|EFU36473.1| NADH ubiquinone oxidoreductase, subunit [Escherichia coli MS 85-1]
Length = 133
Score = 55.0 bits (131), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 51 RTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
R+ + + G C +E+ A P +D ERFG +SPR +D+++ G +T M
Sbjct: 32 RSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMR 89
>gi|218782785|ref|YP_002434103.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfatibacillum
alkenivorans AK-01]
gi|218764169|gb|ACL06635.1| F420-non-reducing hydrogenase, iron-sulfur subunit, MvhG
[Desulfatibacillum alkenivorans AK-01]
Length = 312
Score = 54.6 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 35/141 (24%)
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
V + +Y + G Q+DV I++G + N+ + +V + ++I++
Sbjct: 37 VHIPALMDSKY-FGQLGDGKHLDIPQADVGIISGGIRNEEHLEVAKVMRERC--GFIIAL 93
Query: 127 GSCANGGGY------------YHYSYSV--------------------VRGCDRIVPVDI 154
G+CA GG + Y D+ + VD+
Sbjct: 94 GTCATHGGIPSLANSYTPEQIFERYYHTETTDPADFVPNQGLPALLESCDAVDQHIKVDL 153
Query: 155 YVPGCPPTAEALIYGILLLQK 175
VPGCPP + + ++ L K
Sbjct: 154 LVPGCPPHPDHIFSALVALVK 174
>gi|288561318|ref|YP_003424804.1| coenzyme F420 hydrogenase gamma subunit FrhG [Methanobrevibacter
ruminantium M1]
gi|288544028|gb|ADC47912.1| coenzyme F420 hydrogenase gamma subunit FrhG [Methanobrevibacter
ruminantium M1]
Length = 319
Score = 54.6 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRG 145
+ D+ +V G++ + +++ + + + V + GSCA G + Y + +
Sbjct: 135 WEMPEMDLALVEGSVCLQDEHSVKELMEVREKAGLVCAFGSCAMTGCFTRYARGGQLAQP 194
Query: 146 -------CDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+V VD +PGCP + E + ++ L
Sbjct: 195 KHESFVPISDLVKVDCAIPGCPASPEIIAKVVVALIN 231
>gi|291080839|ref|ZP_06536433.2| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 39
Score = 54.2 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 40 VTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYD 78
+ + +V W R S+ FGL+CC VEM+ + +D
Sbjct: 1 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHD 39
>gi|300087832|ref|YP_003758354.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527565|gb|ADJ26033.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 305
Score = 54.2 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 42/133 (31%)
Query: 79 LERFGFAPRASPRQSDVMIVAGTL----TNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
+ G +DV I+ G++ ++A +RR + + +IS+GSCAN GG
Sbjct: 47 FGQTGEKSEMEIPDADVGIITGSIRSQENKELAEEMRR------KCKIIISLGSCANFGG 100
Query: 135 Y----------------YHYSYSVVRG----------------CDRIVPVDIYVPGCPPT 162
Y + S G + ++ VDI +PGCPPT
Sbjct: 101 IPALGNMYPNSEIFDTAYRKTASTEAGDDPNEALPALTDRVYSVNEVIKVDISIPGCPPT 160
Query: 163 AEALIYGILLLQK 175
E + ++ L +
Sbjct: 161 PEWIANALVALLE 173
>gi|317052152|ref|YP_004113268.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurispirillum
indicum S5]
gi|316947236|gb|ADU66712.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurispirillum
indicum S5]
Length = 261
Score = 54.2 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 45/142 (31%), Gaps = 42/142 (29%)
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
A + P D + F P+ D+ I G +TN L + ++S
Sbjct: 114 AQHVEVVYSPLADTKEF-------PKGVDITIAEGAITN--VENLELLEQVRQHTTTLVS 164
Query: 126 MGSCANGGG----------------YYHYSYSV-----------------VRGCDRIVPV 152
+G CA G YH V ++V V
Sbjct: 165 LGDCAITGNVTSLRNFFPVSDLLNAVYHAGPGTAPHGSEAVKELPALLPKVLPIHQVVKV 224
Query: 153 DIYVPGCPPTAEALIYGILLLQ 174
D ++PGCPP +A+ + L
Sbjct: 225 DGFIPGCPPEPQAIWQAMEALL 246
>gi|332295900|ref|YP_004437823.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
narugense DSM 14796]
gi|332179003|gb|AEE14692.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
narugense DSM 14796]
Length = 155
Score = 54.2 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
E+ P+Y+L R G +PR++D++IV G T KM + +QMPEP V+
Sbjct: 52 FEIFALLSPKYNLHRLGIFFTQTPREADLLIVLGRPTEKMVPLMLEAINQMPEPFGVLLT 111
Query: 127 GS 128
+
Sbjct: 112 EN 113
>gi|197120246|ref|YP_002140673.1| methyl viologen-reducing hydrogenase, small subunit [Geobacter
bemidjiensis Bem]
gi|197089606|gb|ACH40877.1| methyl viologen-reducing hydrogenase, small subunit [Geobacter
bemidjiensis Bem]
Length = 315
Score = 53.9 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 42/115 (36%), Gaps = 36/115 (31%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPR-YVISMGSCANGGGYYHYS----------- 139
+ V +V+G + N+ R +QM + VI+ GSCA GG
Sbjct: 51 HATVGLVSGAIRNEHD---RHAAEQMRKSCDIVIAWGSCAVFGGPAGAGNVHTPDEIAAA 107
Query: 140 -Y--------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
Y SVV D ++ VD Y+PGCPP + + L
Sbjct: 108 VYLENKTTIPAPPPKREVSPLESVVSPLDTVIDVDFYLPGCPPHPVFIFEALTAL 162
>gi|116751372|ref|YP_848059.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116700436|gb|ABK19624.1| F420-non-reducing hydrogenase subunit G [Syntrophobacter
fumaroxidans MPOB]
Length = 309
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 34/116 (29%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYS-------- 141
++ V IV+G + N+ + R+ Q + + ++++G+CA GG SYS
Sbjct: 61 EAAVGIVSGGVRNEEHLEIIRLMRQ--KCQIIVALGTCATHGGIPALSNSYSNQETLERY 118
Query: 142 ----------------------VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
D V VD+Y+PGCPP + + ++ L +
Sbjct: 119 YGTESTDRPEEFPNQGVPTLLDACSALDEQVKVDVYLPGCPPHPDHVFAALVALVE 174
>gi|244280|gb|AAB21279.1| NADH:ubiquinone oxidoreductase (complex I) iron-sulfur protein
fraction 20 kda polypeptide peptides T-4/T-7 [cattle,
heart, Peptide Mitochondrial Partial, 33 aa]
Length = 33
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/33 (93%), Positives = 33/33 (100%)
Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
+VYDQMPEPRYV+SMGSCANGGGYYHYSYSVVR
Sbjct: 1 KVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVR 33
>gi|148657643|ref|YP_001277848.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp.
RS-1]
gi|148569753|gb|ABQ91898.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Roseiflexus sp.
RS-1]
Length = 181
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 39/117 (33%), Gaps = 37/117 (31%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG---------------- 133
P + DV +V G + N+ L R R VI+ G CA G
Sbjct: 49 PDRVDVALVEGAVANEDNLHLIR--QVRERTRLVIAFGDCAVTGNVTALRNVLGDPETLL 106
Query: 134 ------------------GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
G V ++VPVD+Y+PGCPP I +L
Sbjct: 107 HTIYVERADTAGQMPLAPGIVPRLLDRVYPVHKVVPVDVYLPGCPP-PAQRIRALLE 162
>gi|253702558|ref|YP_003023747.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21]
gi|251777408|gb|ACT19989.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21]
Length = 315
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 41/115 (35%), Gaps = 36/115 (31%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPR-YVISMGSCANGGGYYHYS----------- 139
+ V +V+G + N+ R QM E VI+ GSCA GG
Sbjct: 51 HATVGLVSGAIRNEHD---RHAALQMRESCDIVIAWGSCAVFGGPAGAGNIHTPEEIAAA 107
Query: 140 -Y--------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
Y SVV D ++ VD Y+PGCPP + + L
Sbjct: 108 VYLENKTTIPAPPPNREVSPLESVVSPLDTVIDVDFYLPGCPPHPAFIFEALTAL 162
>gi|125539136|gb|EAY85531.1| hypothetical protein OsI_06904 [Oryza sativa Indica Group]
Length = 65
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPR 76
F+++ VD L+ WAR G + MTF L AVEMM R
Sbjct: 26 EFVISKVDDLMNWARRGLMWPMTFRLTYYAVEMMHKGASR 65
>gi|332702530|ref|ZP_08422618.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
africanus str. Walvis Bay]
gi|332552679|gb|EGJ49723.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
africanus str. Walvis Bay]
Length = 312
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 45/119 (37%), Gaps = 38/119 (31%)
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136
+ V IV+G + K + L ++ +I++G+CA GG Y
Sbjct: 61 AVVGIVSGGV--KNSEHLEVLHKMRESCDILIALGTCATDGGLPALANMYTNDEIREFSY 118
Query: 137 HYSYSVV-RGC-------------------DRIVPVDIYVPGCPPTAEALIYGILLLQK 175
H S + V +G D V VDI +PGCPP E + +L L
Sbjct: 119 HDSPTTVDKGVRPNPDKFHIPHMLEHCTALDEHVKVDIKIPGCPPHPEWIAGAVLALLD 177
>gi|320160377|ref|YP_004173601.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1]
gi|319994230|dbj|BAJ63001.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1]
Length = 180
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 36/119 (30%)
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136
DV I+ G + N + + + ++++G CA GG Y
Sbjct: 53 VDVGILEGGINNTANEEV--AHKMRKRCKILVALGDCAVFGGVPAMRNFFKLDEVLKRAY 110
Query: 137 HYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLL-QKKI 177
+ S VR +VPVD++VPGCPP + + Y + L Q +I
Sbjct: 111 IETESTDEEGKIPDDPELAKMTKVRAVHEVVPVDVFVPGCPPDPDVIFYVLSELAQGRI 169
>gi|298506751|gb|ADI85474.1| bidirectional NAD-reducing hydrogenase, small subunit [Geobacter
sulfurreducens KN400]
Length = 181
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 44/129 (34%), Gaps = 39/129 (30%)
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
P D + F P DV +V G +TN+ A+ + Q VIS G CA
Sbjct: 43 VYGPFVDAKEF-------PAGVDVALVEGAVTNRANLAMAGIIRQRSRT--VISFGDCAI 93
Query: 132 GGGYYHYS-----------------------YSVVR-------GCDRIVPVDIYVPGCPP 161
G Y+ V +++PVD Y+PGCPP
Sbjct: 94 TGNVTAMRNLLTVAETLDPFRCDGEASPAFDYAAVPQLLPRALPLHQVIPVDGYIPGCPP 153
Query: 162 TAEALIYGI 170
+ + I
Sbjct: 154 GPDRIRAAI 162
>gi|320353845|ref|YP_004195184.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus
propionicus DSM 2032]
gi|320122347|gb|ADW17893.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus
propionicus DSM 2032]
Length = 308
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 49/160 (30%)
Query: 63 ACCAVEMMQASMPRYDL---ERFGFAPRA--------------SPRQSDVMIVAGTLTNK 105
ACC E+ + L ER ++++ +V+G + ++
Sbjct: 12 ACCGCEIALLNSGESLLRLLERVEIVHFPLLMDHKYHSRGETFDLPEAEIGVVSGGVADR 71
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYSYSVVRG-------- 145
A+ + +I +G+CA GG Y G
Sbjct: 72 AQLAMLKTMRARCHT--LIGLGTCATHGGIPALRNQWSVETTLDTVYGQSAGEQGLVPAA 129
Query: 146 ----------CDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
D V +D+ +PGCPP E ++ I+ L
Sbjct: 130 LAAPLDRVYSVDEQVRLDLCLPGCPPRPETIVEAIVALID 169
>gi|303243538|ref|ZP_07329880.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
gi|302486099|gb|EFL49021.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
Length = 289
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 34/118 (28%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YH 137
P DV +V G + N+ L + + + V++ GSCA GG +
Sbjct: 51 PEGIDVFLVEGGIRNEHDKHLVEEIRE--KSKIVVAWGSCAAFGGIPGLGNLYTKEEFLN 108
Query: 138 YSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
YS V+ ++V VD+ +PGCPP E I+ L +
Sbjct: 109 TIYSTASTDNPGEIPSEDIPPLEEEVKPISKVVKVDLVLPGCPPRPEHNAEAIVALLE 166
>gi|148643182|ref|YP_001273695.1| coenzyme F420-reducing hydrogenase, gamma subunit, FrhG
[Methanobrevibacter smithii ATCC 35061]
gi|222445413|ref|ZP_03607928.1| hypothetical protein METSMIALI_01049 [Methanobrevibacter smithii
DSM 2375]
gi|261350025|ref|ZP_05975442.1| coenzyme F420 hydrogenase, subunit gamma [Methanobrevibacter
smithii DSM 2374]
gi|148552199|gb|ABQ87327.1| coenzyme F420-reducing hydrogenase, gamma subunit, FrhG
[Methanobrevibacter smithii ATCC 35061]
gi|222434978|gb|EEE42143.1| hypothetical protein METSMIALI_01049 [Methanobrevibacter smithii
DSM 2375]
gi|288860811|gb|EFC93109.1| coenzyme F420 hydrogenase, subunit gamma [Methanobrevibacter
smithii DSM 2374]
Length = 276
Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS-------- 139
+ D+ ++ G++ + ++ + + + + + GSCA G + Y+
Sbjct: 92 WEMPEMDLCLIEGSVCLQDEHSVHELLEAREKSALICAFGSCALNGCFTTYARGGQQAQP 151
Query: 140 -YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
+ +V VD+ +PGCP E + ++ L
Sbjct: 152 KHESFLPISSLVKVDVALPGCPVAPEMIAKTVVAL 186
>gi|88603575|ref|YP_503753.1| coenzyme F420 hydrogenase [Methanospirillum hungatei JF-1]
gi|88189037|gb|ABD42034.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanospirillum
hungatei JF-1]
Length = 262
Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
DV +V G++ + ++ + + + V+++G CA G + +
Sbjct: 55 DVALVEGSVCLQDELSVEEIKETREKAAVVVALGGCAAYGNITRFCRGGQWNQPQHEGFV 114
Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
++ VD+Y+PGC P + +
Sbjct: 115 PIGDVIDVDVYIPGCAPCPQQI 136
>gi|39997813|ref|NP_953764.1| NAD-reducing hydrogenase subunit delta [Geobacter sulfurreducens
PCA]
gi|39984705|gb|AAR36091.1| NAD-reducing hydrogenase, delta subunit [Geobacter sulfurreducens
PCA]
Length = 195
Score = 52.3 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 32/111 (28%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------- 139
P DV +V G +TN+ A+ + Q VIS G CA G
Sbjct: 68 PAGVDVALVEGAVTNRANLAMAGIIRQRSRT--VISFGDCAITGNVTAMRNLLTVAETLD 125
Query: 140 -------------YSVVR-------GCDRIVPVDIYVPGCPPTAEALIYGI 170
Y+ V +++PVD Y+PGCPP + + I
Sbjct: 126 PFRCDGEASPAFDYAAVPQLLPRALPLHQVIPVDGYIPGCPPGPDRIRAAI 176
>gi|15668907|ref|NP_247711.1| coenzyme F420-reducing hydrogenase subunit gamma
[Methanocaldococcus jannaschii DSM 2661]
gi|2496112|sp|Q58136|Y726_METJA RecName: Full=Uncharacterized protein MJ0726
gi|1591442|gb|AAB98722.1| coenzyme F420-reducing hydrogenase, gamma subunit
[Methanocaldococcus jannaschii DSM 2661]
Length = 216
Score = 52.3 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG----- 145
++ D+++V G + ++++ + + +I++GSCA GG+ + G
Sbjct: 23 KEKDIVLVGGAVNLDDEEEVKKIMEIRKNSKVLIAVGSCAVSGGFQRMLIGLENGFPQRF 82
Query: 146 --CDRIVPVDIYVPGCPPTAEA---LIYGILLLQKKI 177
+V VD + GCPP E ++ ++ K+I
Sbjct: 83 VRIGDVVKVDYAIIGCPPDEEEVERIVKAVIEKDKEI 119
>gi|116624101|ref|YP_826257.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
Solibacter usitatus Ellin6076]
gi|116227263|gb|ABJ85972.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
Solibacter usitatus Ellin6076]
Length = 176
Score = 52.3 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 35/118 (29%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------YHYSYSVV 143
P DV +V G ++ LRR+ + ++S+G CA G + S +V+
Sbjct: 51 PENVDVTLVEGAIS--SEEDLRRIRLVRSRTKILVSLGDCAVNGNVPAMRNQFGAS-AVL 107
Query: 144 --------------------------RGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
R +VPVD++VPGCPP+A+ + + L +
Sbjct: 108 KRAYLENGTLDAQIPRQVIPTLLPLTRPVHELVPVDLFVPGCPPSADLIFSVLSELLE 165
>gi|206900904|ref|YP_002251593.1| NAD-reducing hydrogenase HoxS delta subunit [Dictyoglomus
thermophilum H-6-12]
gi|206740007|gb|ACI19065.1| NAD-reducing hydrogenase HoxS delta subunit [Dictyoglomus
thermophilum H-6-12]
Length = 180
Score = 52.3 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 37/117 (31%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135
+D+ I+ G + T+ ++ + ++ ++++G CA GG
Sbjct: 53 TDIGIIEGAVATDHHEEEVKMMRERCK---IIVALGDCAVFGGIPTMRNYIPREELLERG 109
Query: 136 YHYSYSVVRG-----------------CDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
Y + S V G + ++ VD+YVPGCPP+A+A+ Y + + +
Sbjct: 110 YITTESTVDGKIPTSPEIGKHLPKTKAVNEVIKVDLYVPGCPPSADAIYYVLKEVLE 166
>gi|167627041|ref|YP_001677541.1| hypothetical protein Fphi_0818 [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597042|gb|ABZ87040.1| conserved hypothetical protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 268
Score = 52.3 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 31/120 (25%)
Query: 92 QSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY--------- 140
D+ + G++ T+ L+++ + + +YVI++G+CA GG +Y
Sbjct: 61 DVDIAFIEGSVNTHHDIPRLQKIRE---KAKYVIAIGACAVAGGIQALRNYTNAAELLEW 117
Query: 141 -----------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
S + V VD + GCP T E ++ I L + V
Sbjct: 118 QKAVYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTEQILKAIRQLLFGVEPEKVV 177
>gi|241667628|ref|ZP_04755206.1| hypothetical protein FphipA2_02580 [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876173|ref|ZP_05248883.1| predicted protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254842194|gb|EET20608.1| predicted protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
Length = 268
Score = 52.3 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 31/120 (25%)
Query: 92 QSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYH-YSY--------- 140
D+ + G++ T+ L+++ + + +YVI++G+CA GG +Y
Sbjct: 61 DVDIAFIEGSVNTHHDIPRLQKIRE---KAKYVIAIGACAVAGGIQALRNYTNAAELLEW 117
Query: 141 -----------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
S + V VD + GCP T E ++ I L + V
Sbjct: 118 QKAVYPQDTDVIIKEDLSTAKAIKEYVNVDFEISGCPITTEQILKAIRQLLFGVEPEKVV 177
>gi|256827280|ref|YP_003151239.1| hydrogenase (NiFe) small subunit HydA [Cryptobacterium curtum DSM
15641]
gi|256583423|gb|ACU94557.1| hydrogenase (NiFe) small subunit HydA [Cryptobacterium curtum DSM
15641]
Length = 439
Score = 51.5 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRI-------VPVDIYVP 157
+ + P V+++GSCA GG+ + + G ++ VPV + +P
Sbjct: 146 KPGTEHLLEAAPSANAVVALGSCAVNGGWMGANPNSAGAVGVEKFLKESGINVPV-VNIP 204
Query: 158 GCPPTAEALIYGIL 171
GCP E L+ ++
Sbjct: 205 GCPANPEWLVAVLV 218
>gi|150398830|ref|YP_001322597.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
vannielii SB]
gi|150011533|gb|ABR53985.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
vannielii SB]
Length = 300
Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 41/126 (32%), Gaps = 36/126 (28%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
+ P DV ++ G + + L + + + VI+ G+CA GG
Sbjct: 42 MDVKEIPENIDVALIEGGI--RNEENLHTAKEMRKKAKIVIAFGTCAVYGGVPGMGNLHS 99
Query: 136 ----YHYSY----------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
+Y S V ++ VD +PGCPP E +
Sbjct: 100 NDALLEKAYKTTVTTKNEEGIIPSEEVPKLTSRVMPLSEVIDVDYILPGCPPKPELIANV 159
Query: 170 ILLLQK 175
+ L +
Sbjct: 160 LTSLLE 165
>gi|20093619|ref|NP_613466.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
kandleri AV19]
gi|19886485|gb|AAM01396.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
kandleri AV19]
Length = 305
Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 37/126 (29%)
Query: 84 FAPRASPRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY------- 135
+ P +V ++ G++ + + + V+++G+CA GG
Sbjct: 45 VDQKEIPEHVNVAVIEGSIRNEEDLEVAEELREAA---DIVVAVGTCACYGGVHGLANLY 101
Query: 136 ---------YHYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169
+ + + VR ++ VD +PGCPP E++
Sbjct: 102 QLDDILEWVFKETPTTDDEGETPEEVVPELFGYVRPLPEVIDVDYMLPGCPPKPESIAEV 161
Query: 170 ILLLQK 175
I + +
Sbjct: 162 ITAILE 167
>gi|189424611|ref|YP_001951788.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
SZ]
gi|189420870|gb|ACD95268.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
SZ]
Length = 316
Score = 51.2 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 32/95 (33%)
Query: 113 VYDQMPEPRYVISMGSCANGGGY----------------YHYSYSV-------------- 142
+ +I+ GSCA GG Y + +
Sbjct: 72 AIEMRKSCDLIIAWGSCAVFGGPAGAGNVHTREEIADAVYLQNKTTSTSTLPNREISPLE 131
Query: 143 --VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
V D+++ VD+Y+ GCPP + ++ L +
Sbjct: 132 VSVTPIDKVIDVDLYLAGCPPHPTYIFDALVSLLE 166
>gi|327401445|ref|YP_004342284.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus
veneficus SNP6]
gi|327316953|gb|AEA47569.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus
veneficus SNP6]
Length = 327
Score = 51.2 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 43/101 (42%)
Query: 118 PEPRYVISMGSCANGGG----------------YYHYSYSVVRG---------------- 145
+ + V + G+CA GG Y S +VV
Sbjct: 81 KKSKLVFAFGACACFGGIPGLANCCSSDEIFDYVYRDSPTVVNPDDVRPTPGCEACNVRL 140
Query: 146 -----------CDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
D ++ VD Y+PGCPP+ ++ L +
Sbjct: 141 DVPEFLDECKALDEVIDVDYYIPGCPPSVNIIVDAFTALLE 181
>gi|124484842|ref|YP_001029458.1| coenzyme F420-reducing hydrogenase, gamma subunit
[Methanocorpusculum labreanum Z]
gi|124362383|gb|ABN06191.1| coenzyme F420-reducing hydrogenase, gamma subunit
[Methanocorpusculum labreanum Z]
Length = 303
Score = 51.2 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------YSVVR 144
DV +V G++ ++ + + V+++G CA G + +
Sbjct: 104 DVALVEGSVCINDECSMEEILETRENAAIVVALGGCACYGNTTRFCRGGQQNQPQHEGFL 163
Query: 145 GCDRIVPVDIYVPGCPPTAEAL 166
++ VD+Y+P C PT + +
Sbjct: 164 PIGDLIKVDVYIPACAPTPQQI 185
>gi|51244426|ref|YP_064310.1| Ni/Fe-hydrogenase, small subunit [Desulfotalea psychrophila LSv54]
gi|50875463|emb|CAG35303.1| probable Ni/Fe-hydrogenase, small subunit [Desulfotalea
psychrophila LSv54]
Length = 364
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 9/71 (12%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRI------VPVDIYVPGCP 160
AL + + P+ +I++G+CA GG S + G + + VP+ + +PGCP
Sbjct: 135 ALEILGEVAPKATAIIAIGTCATSGGIQAASPNPTGAVGVEDLPELTGNVPI-VNIPGCP 193
Query: 161 PTAEALIYGIL 171
P L+ IL
Sbjct: 194 PNPVNLLGTIL 204
>gi|78188225|ref|YP_378563.1| hydrogenase/sulfur reductase, delta subunit [Chlorobium
chlorochromatii CaD3]
gi|78170424|gb|ABB27520.1| hydrogenase/sulfur reductase, delta subunit [Chlorobium
chlorochromatii CaD3]
Length = 247
Score = 50.8 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 30/130 (23%)
Query: 59 TFGLACCAVEMMQASMPRY---------DLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
+F CC +Q + D+ F D+ ++ G++T +
Sbjct: 11 SFDFTCCEGCQLQLANSEASLADFLALLDIRNFREISSERYDDYDIALIEGSVTRQDE-- 68
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGY-YHYSYSV------------------VRGCDRIV 150
+ R+ + + V++ GSCA GG +Y VR ++
Sbjct: 69 VERLLAIREQAKVVVAFGSCACFGGVNSLKNYHTISDCVHTVYGNMAVETLPVRKISDVI 128
Query: 151 PVDIYVPGCP 160
VD +PGCP
Sbjct: 129 AVDFSIPGCP 138
>gi|331664273|ref|ZP_08365179.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli TA143]
gi|331058204|gb|EGI30185.1| formate hydrogenlyase subunit 7 (FHL subunit 7)
(Hydrogenase-3component G) [Escherichia coli TA143]
Length = 88
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 33 ITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLERFGFAPRASPR 91
+ L R+ + + G C +E+ P +D ERFG SPR
Sbjct: 18 TVDESIASMKASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPR 77
Query: 92 QSDVMIVAGTL 102
+D+++ G +
Sbjct: 78 HADILLFTGAV 88
>gi|300088029|ref|YP_003758551.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527762|gb|ADJ26230.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 249
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 23/106 (21%)
Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--- 134
D+ F + D+ + G++T + A R+ + ++++G+CA GG
Sbjct: 36 DIVNFREVRTDRSDEYDIAFIEGSITRESEIA--RLKEIRERAAVLVALGACACTGGINC 93
Query: 135 -------------YYHYS---YSVV--RGCDRIVPVDIYVPGCPPT 162
Y Y + R D +V VD Y+ GCPPT
Sbjct: 94 MKNAYETEELLKGVYGDCAAYYDTIPTRPADAVVKVDAYIRGCPPT 139
>gi|296109068|ref|YP_003616017.1| hypothetical protein Metin_0383 [Methanocaldococcus infernus ME]
gi|295433882|gb|ADG13053.1| hypothetical protein Metin_0383 [Methanocaldococcus infernus ME]
Length = 285
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 46/128 (35%), Gaps = 42/128 (32%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YH 137
P DV +V G + NK L + + + + V++ G+CA GG
Sbjct: 48 PDGIDVFLVEGGIRNKHDEHLIKEIRE--KSKIVVAFGTCAAYGGIPGLANLYDKEELLK 105
Query: 138 YSYS--------------------VVRGCDRIVPVDIYVPGCPPTAEAL---IYGIL--- 171
Y+ V+R V VD +PGCPP + + + IL
Sbjct: 106 EVYNTDSTDNKGEMPKEEIPELTDVLRPISDYVKVDYVIPGCPPCPDEIAKALEAILKGE 165
Query: 172 --LLQKKI 177
L KKI
Sbjct: 166 APKLSKKI 173
>gi|212702286|ref|ZP_03310414.1| hypothetical protein DESPIG_00297 [Desulfovibrio piger ATCC 29098]
gi|212674279|gb|EEB34762.1| hypothetical protein DESPIG_00297 [Desulfovibrio piger ATCC 29098]
Length = 316
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV--VRGCDRIV-------PVDIY 155
MA ++++ P+ V+++G+CA GG SV G ++ PV +
Sbjct: 134 TMADLVKKL---APDAAAVLALGTCAAYGGIPAAKGSVTEAMGTGALLKQAGIKTPV-VN 189
Query: 156 VPGCPPTAEALIYGILLLQKKIRRVG 181
+PGCPP + ++ I L +KI+ G
Sbjct: 190 IPGCPPQPDWIVGTIALALQKIKEKG 215
>gi|254431413|ref|ZP_05045116.1| F420-non reducing hydrogenase, subunit gamma [Cyanobium sp. PCC
7001]
gi|197625866|gb|EDY38425.1| F420-non reducing hydrogenase, subunit gamma [Cyanobium sp. PCC
7001]
Length = 193
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 39/125 (31%), Gaps = 41/125 (32%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
P DV +V G + A L R V+S G CA G
Sbjct: 56 PENVDVCLVEGAV--ANADNLELALQLRQRSRLVVSFGDCAVTGNVPALRNLWSEVDGGS 113
Query: 136 ----YHYSY---------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
Y VR ++ VD+Y+PGCPP+AE + I
Sbjct: 114 RQSVLDRGYLELADTGAQHPHAPGIVPELLERVRPLHEVIAVDLYLPGCPPSAERIRAAI 173
Query: 171 LLLQK 175
L K
Sbjct: 174 EPLLK 178
>gi|78224510|ref|YP_386257.1| F420-non-reducing hydrogenase subunit G [Geobacter metallireducens
GS-15]
gi|78195765|gb|ABB33532.1| F420-non-reducing hydrogenase subunit G [Geobacter metallireducens
GS-15]
Length = 316
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 36/116 (31%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------Y 135
+ + +V+G + T A + +I+ GSCA GG
Sbjct: 52 AKLGLVSGAIRTEHDRHA---AIEMRKSCDLIIAWGSCAVYGGIAGAGNVHSRQEIIDAV 108
Query: 136 YHYSYSV----------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
Y + + V D ++ VD+Y+PGC P + +L L +
Sbjct: 109 YIGNKTTATHAPPTKEVSALEPSVSPLDSVIDVDLYLPGCAPHPAFVFDALLALLE 164
>gi|152990706|ref|YP_001356428.1| Ni-Fe hydrogenase, small subunit HupS [Nitratiruptor sp. SB155-2]
gi|151422567|dbj|BAF70071.1| Ni-Fe hydrogenase, small subunit HupS [Nitratiruptor sp. SB155-2]
Length = 286
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 15/94 (15%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYD----QMPEPRYVISMGSCANGGGYYHYSYSVVRGC- 146
D+++V G L +Y+ + + ++++GSCA GG + + G
Sbjct: 55 DCDILVVEGGLKQGWKKGKHDLYEIFTDLAKKAKKIVAVGSCAVYGGVFKEFDPTITGVL 114
Query: 147 ----------DRIVPVDIYVPGCPPTAEALIYGI 170
++ + +PGCP E + +GI
Sbjct: 115 FDKNQKNRLYEQFFDKTVNIPGCPAHPEWIAFGI 148
>gi|39997513|ref|NP_953464.1| nickel-dependent hydrogenase small subunit [Geobacter
sulfurreducens PCA]
gi|39984404|gb|AAR35791.1| nickel-dependent hydrogenase, small subunit, putative [Geobacter
sulfurreducens PCA]
gi|298506455|gb|ADI85178.1| methyl viologen-reducing hydrogenase, small subunit [Geobacter
sulfurreducens KN400]
Length = 316
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 42/132 (31%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------------ 139
+ V +V+G + T A + +I+ GSCA GG
Sbjct: 52 AKVGLVSGAIRTEHDRHA---AMEMRKSCDLIIAWGSCAVYGGIAGAGNVHSCQEIMDTV 108
Query: 140 YS--------------------VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK---- 175
Y+ V D ++ VD+Y+PGC P + +L L +
Sbjct: 109 YTGNKTTATTTPPTREVSALEPSVSPLDSVIDVDLYLPGCAPHPAFVFDALLALLEGRSP 168
Query: 176 KIRRVGNV--KC 185
+I V +C
Sbjct: 169 RIANRETVCARC 180
>gi|219849352|ref|YP_002463785.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus
aggregans DSM 9485]
gi|219543611|gb|ACL25349.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus
aggregans DSM 9485]
Length = 177
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 46/141 (32%)
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
P D++RF P DV ++ G + N L + + ++S G CA
Sbjct: 38 VYSPIADVKRF-------PSHVDVTLIEGAIANN--EHLELAHIARRNSKIIVSFGDCAV 88
Query: 132 GG----------------------------------GYYHYSYSVVRGCDRIVPVDIYVP 157
G G V +++PVD Y+
Sbjct: 89 SGNVTALRNPLGSPEQLLQQVYIEHSDPRGKIPHEPGIVPVLLDKVMPVHQVIPVDYYLS 148
Query: 158 GCPPTA---EALIYGILLLQK 175
GCPP+A AL+ +L +K
Sbjct: 149 GCPPSAPRIRALLEALLTGRK 169
>gi|297569388|ref|YP_003690732.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurivibrio
alkaliphilus AHT2]
gi|296925303|gb|ADH86113.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurivibrio
alkaliphilus AHT2]
Length = 178
Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 34/118 (28%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
P + D+ ++ G ++ A R+ R V+++G CA G
Sbjct: 50 PDRVDLALLEGAVSTPEDEAKARLVRA--HSRLVVALGDCACQGNVPALRNRLDNEQLLD 107
Query: 136 -----YHYSYSVVRG-------------CDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ R++ VD+++PGCPP A++ + +
Sbjct: 108 LVYRQQADGPAAAPPDRNVPPLLTHSLPLHRVIAVDLFLPGCPPPPAAIVRALTAVLD 165
>gi|126180116|ref|YP_001048081.1| coenzyme F420 hydrogenase [Methanoculleus marisnigri JR1]
gi|125862910|gb|ABN58099.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanoculleus
marisnigri JR1]
Length = 263
Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS---------V 142
+ DV +V G+ ++ + + + + +++ G CA G +
Sbjct: 63 EMDVCLVEGSCCLNDKISVEELKEARAKSKVLVAYGGCAAYGNITRFCRGGQWNQPAQEA 122
Query: 143 VRGCDRIVPVDIYVPGCPPTAEAL 166
+V VD+Y+P CPP + +
Sbjct: 123 FVPISEVVDVDLYIPSCPPCPQQV 146
>gi|46580326|ref|YP_011134.1| periplasmic [NiFeSe] hydrogenase small subunit [Desulfovibrio
vulgaris str. Hildenborough]
gi|120602295|ref|YP_966695.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris DP4]
gi|284449405|pdb|2WPN|A Chain A, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase
From D. Vulgaris Hildenborough
gi|46449743|gb|AAS96393.1| periplasmic [NiFeSe] hydrogenase, small subunit [Desulfovibrio
vulgaris str. Hildenborough]
gi|120562524|gb|ABM28268.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris DP4]
gi|311233694|gb|ADP86548.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris RCH1]
Length = 317
Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA-GTLTNKMASALRRVYDQMPEPRYVI 124
A+E M+ ++ + F + P ++D G + S + + + P V+
Sbjct: 91 AIEHMRKVAEKFKGKFFLVIEGSVPVEADGKYCIIGEANHHEISMVDALKEFGPNAAAVL 150
Query: 125 SMGSCANGGGY--YHYSYSVVRGCDRIV-------PVDIYVPGCPPTAEALIYGILLLQK 175
++G+CA GG S + + + PV + +PGCPP + ++ ++L
Sbjct: 151 AVGTCAAYGGIPAAEGSETGATAVSKFLGDNGIKTPV-VNIPGCPPHPDWIVGTVVLALD 209
Query: 176 KIRRVG 181
I++ G
Sbjct: 210 AIKKNG 215
>gi|150401637|ref|YP_001325403.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
aeolicus Nankai-3]
gi|150014340|gb|ABR56791.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
aeolicus Nankai-3]
Length = 288
Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 35/118 (29%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------- 139
P DV ++ G N+ L + + + V++ G+CA GG
Sbjct: 51 PEGIDVFLIEGGAKNEHDKHLME--EIRAKSKTVVAWGTCAAFGGIPGLGNLYKLEDLKK 108
Query: 140 --YSV---------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
Y+ ++ ++ VDI +PGCPPT + IL L
Sbjct: 109 TVYTTDSTDETAGTIPSENVPELLEELKPVSDVIDVDIELPGCPPTPAMIANAILALL 166
>gi|254173024|ref|ZP_04879698.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Thermococcus
sp. AM4]
gi|214033180|gb|EEB74008.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Thermococcus
sp. AM4]
Length = 241
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 28/144 (19%)
Query: 61 GLACCAVEMMQASMPRYD------LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
CA+ + +D +E F A R R DV +V GT+++ + R
Sbjct: 10 DCGGCALNFLFLYERLFDVLEFYEIEEFHMATRLEGRHFDVGLVTGTVSSHRDLEVLR-- 67
Query: 115 DQMPEPRYVISMGSCANGG---------------GYYHYSYSVVRGCD-----RIVPVDI 154
+ Y+I++G+CA G Y + +R D V VD+
Sbjct: 68 EARNRSDYLIALGTCATHGCLQASVELPLKEKLKAVYGDEGNPMRALDPKPVVEYVTVDL 127
Query: 155 YVPGCPPTAEALIYGILLLQKKIR 178
+PGCP L ++ + K I
Sbjct: 128 AIPGCPYDKNELFQALIDIAKGIE 151
>gi|78222330|ref|YP_384077.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
metallireducens GS-15]
gi|78193585|gb|ABB31352.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY [Geobacter
metallireducens GS-15]
Length = 180
Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 50/135 (37%), Gaps = 40/135 (29%)
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
P D + F PR+ DV +V G +TN+ A+ + + R V+S+G CA
Sbjct: 41 VYGPFMDAKEF-------PRKVDVTLVEGAVTNRANLAMALMLRE--RSRIVVSLGDCAV 91
Query: 132 GGGY---------------YHYS---------YSVVR-------GCDRIVPVDIYVPGCP 160
G + Y+ V +++ VD ++PGCP
Sbjct: 92 TGNVTSLRNQLPVADVLATFLSCGEGSVPAMDYNAVPELLPRALPLHQVIAVDGFLPGCP 151
Query: 161 PTAEALIYGILLLQK 175
P E + I L +
Sbjct: 152 PDPERIWTAIGCLLR 166
>gi|37787354|gb|AAP50522.1| Hox1Y [Thiocapsa roseopersicina]
Length = 180
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 33/115 (28%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
P DV I+ G+++ L + + + ++S+G CA G
Sbjct: 52 PDHVDVGILEGSIS--SEDDLEKAHAFRKHCKILVSLGDCAVNGNVPAMRNHFKLADVVD 109
Query: 136 --YHYSY---------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
Y + +VV+ +V VD++VPGCPP+A+A+ Y + L
Sbjct: 110 RAYRDTVTFQPQTPTQGVPALLAVVKPIHGVVGVDVFVPGCPPSADAIWYVLSEL 164
>gi|289191703|ref|YP_003457644.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
sp. FS406-22]
gi|288938153|gb|ADC68908.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
sp. FS406-22]
Length = 298
Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 36/126 (28%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
+ P + D+ ++ G + NK + + + + VI+ G+CA GG
Sbjct: 41 MDVKEIPDEIDIALIEGGIRNKENEEI--AKEMRNKAKIVIAFGTCATFGGVPGLGNLYS 98
Query: 136 ----YHYSY----------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
Y S V+ I+ VD ++PGCPP E +
Sbjct: 99 KEEILEKVYKTTLSTKNDEGIIPSEEVPPLTSRVKPLSEIIDVDYFIPGCPPNPEMIAKV 158
Query: 170 ILLLQK 175
+ L +
Sbjct: 159 LKALLE 164
>gi|20093976|ref|NP_613823.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
kandleri AV19]
gi|19886938|gb|AAM01753.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
kandleri AV19]
Length = 238
Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--------HYSYS-V 142
+D++ V G + A L ++ + V+S+GSCA GG+ Y
Sbjct: 42 DADILFVEGAVDFADAETLEKLEEAASAVSTVVSLGSCAATGGFERHVIGMRDPDRYHFT 101
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
V + V D + GCPPT + + + L++
Sbjct: 102 VFPAAKFVETDYAINGCPPTTDVIASFLRALEE 134
>gi|45358385|ref|NP_987942.1| coenzyme F420-non-reducing hydrogenase subunit gamma [Methanococcus
maripaludis S2]
gi|44921143|emb|CAF30378.1| coenzyme F420-non-reducing hydrogenase subunit gamma [Methanococcus
maripaludis S2]
Length = 300
Score = 48.8 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 44/123 (35%), Gaps = 37/123 (30%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
+ P DV ++ G + + L + + + VI+ G+CA GG
Sbjct: 42 MDVKEIPDDIDVALIEGGI--RNEENLHIAQEMRKKAKIVIAFGTCAVYGGIPGIGNLYS 99
Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169
Y ++S V+ ++ VD +PGCPP E LI G
Sbjct: 100 NEALLEKAYKTTFSTKNEEGIIPSEDVPELTSRVKPLSDVIDVDYILPGCPPKPE-LIAG 158
Query: 170 ILL 172
+L
Sbjct: 159 VLT 161
>gi|325958127|ref|YP_004289593.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
AL-21]
gi|325329559|gb|ADZ08621.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
AL-21]
Length = 309
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 44/129 (34%)
Query: 84 FAPRASPRQSDVMIVAGTL----TNKMASALRRVYDQMPEPRYVISMGSCANGGGY---- 135
P DV+I+ G + ++A LR+ + ++VI+ G CA GG
Sbjct: 47 VKYDEVPDDLDVLIIEGGIRNDENRELAEMLRK------KAKFVIAYGVCAVYGGIPGLG 100
Query: 136 ------------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEA 165
Y S S VR ++ VD+ +PGCP ++
Sbjct: 101 NLHTADELAQEAYVNSASTYNEEGIIPNEDIPHLESRVRPLSDVIDVDLSIPGCPTRSDV 160
Query: 166 LIYGILLLQ 174
L ++ L
Sbjct: 161 LAEALVALL 169
>gi|134045692|ref|YP_001097178.1| F420-non-reducing hydrogenase subunit G [Methanococcus maripaludis
C5]
gi|132663317|gb|ABO34963.1| F420-non-reducing hydrogenase subunit G [Methanococcus maripaludis
C5]
Length = 300
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 36/126 (28%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
+ P DV ++ G + + L+ + + + VI+ G+CA GG
Sbjct: 42 MDVKEIPDGIDVALIEGGI--RNEENLQTAQEMRKKAKIVIAFGTCAAFGGIPGMGNLYS 99
Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169
Y ++S V+ ++ VD +PGCPP E +
Sbjct: 100 NEALLEKAYKTTFSTKNEEGIIPSEDVPELTSRVKPLSDVIDVDYILPGCPPKPELIAEV 159
Query: 170 ILLLQK 175
+ L K
Sbjct: 160 LTSLLK 165
>gi|20094366|ref|NP_614213.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
kandleri AV19]
gi|19887431|gb|AAM02143.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
kandleri AV19]
Length = 252
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR------- 144
+ DV +V G + L V + ++++G+CA+ G + S +
Sbjct: 68 ECDVAVVEGAVCLNDEHMLEEVEELEEHADTIVALGACASTGNFMRLSRGNQQAAPTHEA 127
Query: 145 --GCDRIVPVDIYVPGCPPTAEAL 166
+ VD VPGCPP EA+
Sbjct: 128 FVPLTEVADVDYAVPGCPPAPEAI 151
>gi|333015434|gb|EGK34773.1| formate hydrogenlyase subunit 7 [Shigella flexneri K-227]
Length = 118
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 4/33 (12%)
Query: 153 DIYVPGCPPTAEALIYGILL----LQKKIRRVG 181
D+Y+PGCPPT A +YG + L++KI G
Sbjct: 2 DVYIPGCPPTPAATLYGFAMALGLLEQKIHARG 34
>gi|116749227|ref|YP_845914.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116698291|gb|ABK17479.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 312
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 34/126 (26%)
Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHY 138
+ G + ++ V I++G++ + L + + + +I++G+CA GG
Sbjct: 50 QLGEGKHINIPEATVGIISGSI--RNHEHLEVAEEMRRKCQIIIALGTCATHGGIPALAN 107
Query: 139 SYS------------------------------VVRGCDRIVPVDIYVPGCPPTAEALIY 168
SY V D + VDIY+PGC P + +
Sbjct: 108 SYRNQEILDRYYHTETTDKVDEYPSEGIPHLLDSVYALDEKIKVDIYLPGCAPHPDQVFA 167
Query: 169 GILLLQ 174
+ L
Sbjct: 168 ALAGLL 173
>gi|150400536|ref|YP_001324302.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
aeolicus Nankai-3]
gi|150013239|gb|ABR55690.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
aeolicus Nankai-3]
Length = 300
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 34/97 (35%)
Query: 113 VYDQMPEPRYVISMGSCANGGGY----------------YHYSYSV-------------- 142
+ + + V++ G+CA GG Y + S
Sbjct: 69 AIEMRKKAKIVVAFGTCAVYGGVPGLGNLHSNEEILDKAYKTTPSTENEKGIIPNEEIPE 128
Query: 143 ----VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
VR ++ VD +PGCPP E + ++ L +
Sbjct: 129 LTSRVRPLPDVIDVDYIIPGCPPEPELIAKILIALVE 165
>gi|297619112|ref|YP_003707217.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
A3]
gi|297378089|gb|ADI36244.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
A3]
Length = 303
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 36/126 (28%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
+ P DV ++ G + + L + + + V++ G+CA GG
Sbjct: 42 MDVKEIPNDIDVALIEGGI--RNEENLHTAKEMRKKAKIVVAFGTCAVYGGIPGMGNLYS 99
Query: 136 ----YHYSY----------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
+Y S V +++ VD +PGCPP E +
Sbjct: 100 NEEILEKAYKTTLTTKNDEGIIPNEEVPPLTSRVVPLSQVIDVDYILPGCPPKPELIASV 159
Query: 170 ILLLQK 175
+ L +
Sbjct: 160 LTALLE 165
>gi|170290731|ref|YP_001737547.1| coenzyme F420-reducing hydrogenase, gamma subunit [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170174811|gb|ACB07864.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 319
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 49/104 (47%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGG----------------YYHYSYSV----- 142
+M LRR + + VI+ GSCA+ GG Y + +V
Sbjct: 74 EEMVKLLRR------KSKLVIAYGSCAHMGGIPALANAYTRESILKYVYEEAPTVTNPEG 127
Query: 143 ----------------------VRGCDRIVPVDIYVPGCPPTAE 164
+ D ++ VD Y+PGCPPT E
Sbjct: 128 KRPKTRVSVDGMDFELPEFLEYLDPLDAVIDVDYYIPGCPPTPE 171
>gi|294102537|ref|YP_003554395.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium
colombiense DSM 12261]
gi|293617517|gb|ADE57671.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Aminobacterium
colombiense DSM 12261]
Length = 179
Score = 47.7 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 45/123 (36%), Gaps = 37/123 (30%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135
+ V ++ G L N+ + + + + +I+ G CA GG
Sbjct: 50 EVTVGVIEGALGNE--EEVHLAKEMRKKCKILIAWGDCAVFGGINCMRNFAKVEDVLKEG 107
Query: 136 YHYSYSVVR------------------GCDRIVPVDIYVPGCPPTAEALIYGILL-LQKK 176
Y + S V D V VD+YVPGCPP A+ + Y LQ +
Sbjct: 108 YINTVSTVNPKGILPGEDIPKLLPHAIPVDYEVKVDVYVPGCPPDADTIYYVFEEILQGR 167
Query: 177 IRR 179
I +
Sbjct: 168 IPK 170
>gi|87303133|ref|ZP_01085931.1| hydrogenase small subunit [Synechococcus sp. WH 5701]
gi|87282300|gb|EAQ74260.1| hydrogenase small subunit [Synechococcus sp. WH 5701]
Length = 188
Score = 47.7 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 39/120 (32%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------Y 136
P DV +V G + N AL ++ R ++S G CA
Sbjct: 56 PEAVDVALVEGGVGNSDNLAL--IHQVRQRTRLLVSFGDCAITANVPGLRNPLAGPAAVL 113
Query: 137 HYSY---------------------SVVRGCDRIVPVDIYVPGCPPTAE---ALIYGILL 172
SY V +VPVD+++PGCPP AE A++ +L
Sbjct: 114 DRSYLELADGSAQWPHAPGLVPDLLERVLPVHELVPVDLFLPGCPPPAERIRAVLDALLR 173
>gi|119510365|ref|ZP_01629500.1| hydrogenase small subunit [Nodularia spumigena CCY9414]
gi|119465002|gb|EAW45904.1| hydrogenase small subunit [Nodularia spumigena CCY9414]
Length = 181
Score = 47.7 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 46/126 (36%), Gaps = 43/126 (34%)
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
P D++ + P+ DV++V G + N+ L+ ++ R ++S G CA
Sbjct: 38 VYSPFADIKEY-------PQGVDVVLVEGAVANEDH--LQMIHQVRERSRILVSFGDCAV 88
Query: 132 GGGY-------------YHYSY---------------------SVVRGCDRIVPVDIYVP 157
G Y V +IVPVDIY+P
Sbjct: 89 TGNVTALRNPLGSAEPVLQRCYIEAADIHGQIPHEPGIVPTLLDRVVPVHKIVPVDIYMP 148
Query: 158 GCPPTA 163
GCPP+A
Sbjct: 149 GCPPSA 154
>gi|121533907|ref|ZP_01665733.1| hydrogenase (NiFe) small subunit HydA [Thermosinus carboxydivorans
Nor1]
gi|121307418|gb|EAX48334.1| hydrogenase (NiFe) small subunit HydA [Thermosinus carboxydivorans
Nor1]
Length = 413
Score = 47.7 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIY-VPGCPPTAEAL 166
L V P+ +Y+I++G CA GG + + +G ++V + +PGCP + +
Sbjct: 135 LAAVRAMAPKAKYIIAVGDCACYGGPSAAYPNPGGAKGVGKVVSQTVINIPGCPAHPDWI 194
Query: 167 --------IYGILLL 173
+YG+ L
Sbjct: 195 TGTLTHLLLYGMPQL 209
>gi|288574749|ref|ZP_06393106.1| Hydrogen dehydrogenase [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288570490|gb|EFC92047.1| Hydrogen dehydrogenase [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 179
Score = 47.3 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 34/88 (38%)
Query: 122 YVISMGSCANGGGY----------------YHYSYSVVR------------------GCD 147
+I+ G CA GG Y + S V D
Sbjct: 78 ILIAWGDCAVMGGINSMRNFMKPEEALEVGYKDTLSTVNPDGVIPGEDLPKLLPMAIPID 137
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLLQK 175
V VD+Y+PGCPP A+ ++Y + +
Sbjct: 138 DEVKVDVYIPGCPPDADTILYVFQEILE 165
>gi|282899672|ref|ZP_06307636.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Cylindrospermopsis
raciborskii CS-505]
gi|281195551|gb|EFA70484.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Cylindrospermopsis
raciborskii CS-505]
Length = 163
Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 43/144 (29%)
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
A ++ P D++ + P DV++V G + N+ L ++ + +IS
Sbjct: 14 ATQVDVVYSPIADIKEY-------PEGVDVVLVEGAIANE--EHLEIIHKIRQRTKTIIS 64
Query: 126 MGSCANGGGY---------------------------YHYSYSVVRG-CDRIVPV----- 152
G CA G +S +V DR+VPV
Sbjct: 65 FGDCAVTGNVTAMRNLTGTANVSLQLAYIEGADVNQKIPHSPGIVPPLIDRVVPVHNIVD 124
Query: 153 -DIYVPGCPPTAEALIYGILLLQK 175
DIY+PGCPP+A + + L +
Sbjct: 125 VDIYLPGCPPSATRIKAALEPLLR 148
>gi|283850497|ref|ZP_06367785.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio sp. FW1012B]
gi|283574068|gb|EFC22040.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio sp. FW1012B]
Length = 314
Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPV-DIYVPGCPPTA 163
P+ + VI +G+CA GG + S +G + + I + GCPP
Sbjct: 142 HPMFETTKKIAPKAKGVICIGACACYGGIQKAKPNPSQAKGVTEGLGIKTINIAGCPPNP 201
Query: 164 EALIYGILLLQKK 176
+ ++ + +K
Sbjct: 202 INFVGAVVHVLEK 214
>gi|182415490|ref|YP_001820556.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
PB90-1]
gi|177842704|gb|ACB76956.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
PB90-1]
Length = 334
Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
VR D++V VD Y+PGCPPT + I L +
Sbjct: 148 HTVRSLDQVVAVDYYIPGCPPTPKITKAAITALLE 182
>gi|224369333|ref|YP_002603497.1| HynB [Desulfobacterium autotrophicum HRM2]
gi|223692050|gb|ACN15333.1| HynB [Desulfobacterium autotrophicum HRM2]
Length = 330
Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 115 DQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVPVD-IYVPGCPPTAEALIYGIL 171
D +P+ I++G+CA GG + +G + V I + GCPP L+ I+
Sbjct: 165 DVIPKAAVTIALGTCAAYGGIPSAAPNPGGYKGVKDAIGVATINISGCPPNPLNLLSTIV 224
Query: 172 LLQKK 176
K
Sbjct: 225 KYLNK 229
>gi|254459031|ref|ZP_05072454.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Campylobacterales
bacterium GD 1]
gi|207084302|gb|EDZ61591.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Campylobacterales
bacterium GD 1]
Length = 287
Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEP----RYVISMGSCANGGGYYHYS-YSVVRGC- 146
D+M++ GT+++ A V D + + + ++++G+CA GG + S Y G
Sbjct: 53 CDIMLIEGTISDDFKRADVLVVDIIKKYAKIVKKIVTVGTCATFGGIFKESDYENATGLH 112
Query: 147 -DRIVPVD---------IYVPGCPPTAEALIYGILLLQKKIR 178
DR P+D I V GCP E L+ + ++K +
Sbjct: 113 FDRNKPIDSFKNLLDKTISVSGCPVHPETLVNTLYAIKKSVD 154
>gi|91780573|ref|YP_555780.1| hydrogen dehydrogenase [Burkholderia xenovorans LB400]
gi|91693233|gb|ABE36430.1| Hydrogen dehydrogenase [Burkholderia xenovorans LB400]
Length = 193
Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 36/109 (33%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG------------YYHYS 139
Q D+ ++ G + N + R + + +++MG+CA GG +
Sbjct: 64 QCDIGLIEGGVCNSENVEVLRAFRAHCKT--LVAMGACAINGGLPAERNRFALADVLNEV 121
Query: 140 Y----------------------SVVRGCDRIVPVDIYVPGCPPTAEAL 166
Y VR +V VD ++PGCPP+A+A
Sbjct: 122 YRDRAGLREGSAIPDDPELPVLLQQVRPIHAVVHVDYFLPGCPPSADAF 170
>gi|307153305|ref|YP_003888689.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
7822]
gi|306983533|gb|ADN15414.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
7822]
Length = 182
Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 44/131 (33%), Gaps = 44/131 (33%)
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
A ++ P DL+ + P DV +V G + N+ L +Y + VIS
Sbjct: 32 AAQVEVVYTPIADLKDY-------PENVDVCLVEGAIANE--DNLELIYQVRKNTKLVIS 82
Query: 126 MGSCANG-----------GG---YYHYSYSV---------------------VRGCDRIV 150
G CA GG Y V ++
Sbjct: 83 FGDCAVTANVPAMRNMLKGGAEPVLKRGYLELADDTRQLPDEPGIVPELLDKVTPVHEVI 142
Query: 151 PVDIYVPGCPP 161
PVD+++PGCPP
Sbjct: 143 PVDLFMPGCPP 153
>gi|295107009|emb|CBL04552.1| hydrogenase (NiFe) small subunit (hydA) [Gordonibacter pamelaeae
7-10-1-b]
Length = 415
Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRI-----VPVDIY-VPG 158
+ + + V+++GSCA GG+ + G + + VD+ +PG
Sbjct: 134 KPGTEHLIEAAEKANAVVALGSCAVNGGWMGAHPNSSGALGVQQFLEKAGIDVDVINIPG 193
Query: 159 CPPTAEALIYGIL 171
CP E L+ ++
Sbjct: 194 CPANPEWLVSVLV 206
>gi|268590652|ref|ZP_06124873.1| hydrogenase-2 small chain [Providencia rettgeri DSM 1131]
gi|291314045|gb|EFE54498.1| hydrogenase-2 small chain [Providencia rettgeri DSM 1131]
Length = 372
Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---IYVPGCPP 161
+ + + VI++GSCA+ GG + G D+++ D I +PGCPP
Sbjct: 135 KPIVEHIREVAEHAAAVIAIGSCASWGGVAAAGDNPTGAVGLDQVIK-DKTVINIPGCPP 193
Query: 162 TAEALIYGILLL 173
+ + L
Sbjct: 194 NPHNFLATVAHL 205
>gi|224372616|ref|YP_002606988.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Nautilia
profundicola AmH]
gi|223588337|gb|ACM92073.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Nautilia
profundicola AmH]
Length = 288
Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 22/91 (24%)
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRY-----VISMGSCANGGGYYHYS------ 139
+Q D++IV G L L +++ + V+++G+CA GG +
Sbjct: 51 KQCDLLIVEGAL-KNNYPRLGYSLNELISKLFFKAKKVLALGTCAVYGGMFGEGLMYNKE 109
Query: 140 ----YSVVRGCDRIVPVDIYVPGCPPTAEAL 166
Y R D+I+ +PGCPP + +
Sbjct: 110 QKGHYYKCR--DKII----NLPGCPPHPDWI 134
>gi|2072169|gb|AAB53703.1| bidirectional hydrogenase small subunit [Prochlorothrix hollandica]
Length = 178
Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 34/154 (22%), Positives = 49/154 (31%), Gaps = 47/154 (30%)
Query: 61 GLACCAVEMMQASMPRYDLER--------FGFAPRASPRQSDVMIVAGTLTNKMASALRR 112
G + C + + DL R G + P DV +V G + N+ L
Sbjct: 13 GCSGCHMSFLDLDEWLIDLAREVEVVYSPVGCDLKDYPEGVDVCLVEGAVANE--ENLEL 70
Query: 113 VYDQMPEPRYVISMGSCANGG----------------------------------GYYHY 138
Y + VIS G CA G
Sbjct: 71 AYRVRQRTKMVISFGDCAVTANVPAMLGDGDAGNAVLKRAYLELGDVTPQLPDEPGIVPP 130
Query: 139 SYSVVRGCDRIVPVDIYVPGCPP---TAEALIYG 169
V +++PVD+Y+PGCPP E L++G
Sbjct: 131 LLDQVLPLHQVIPVDLYLPGCPPPADRIEPLLHG 164
>gi|94265736|ref|ZP_01289473.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
proteobacterium MLMS-1]
gi|93453749|gb|EAT04125.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
proteobacterium MLMS-1]
Length = 176
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 35/128 (27%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG------------GGYYH 137
P D+ ++ G ++N L + + V+++G CA G
Sbjct: 49 PEHVDLTLLEGAVSND--DDLEKAKLVRQRSKLVVALGDCAVGTNVPGMRNTLEREAILQ 106
Query: 138 YSYSVVR-------------------GCDRIVPVDIYVPGCPPTAEALIYGI--LLLQKK 176
Y + +++ VD+++PGCPP A A++ + +L Q++
Sbjct: 107 LIYHKLADHAPGIPTEQIPALLPQSLPLHQVIRVDLFLPGCPPPAAAIVQALNAVLAQQE 166
Query: 177 IRRVGNVK 184
+ + +K
Sbjct: 167 LSELPTLK 174
>gi|291614073|ref|YP_003524230.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans
lithotrophicus ES-1]
gi|291584185|gb|ADE11843.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sideroxydans
lithotrophicus ES-1]
Length = 179
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 35/121 (28%)
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--- 135
+R D+ IV G + N A + +++ + +I++G+CA GG
Sbjct: 38 FDRSPITDIKHCGPCDIGIVEGGVCN--AENVHVLHEFRKNCKILIAIGACAINGGLPAQ 95
Query: 136 ---------YHYSYSVVRGCD---------------------RIVPVDIYVPGCPPTAEA 165
Y G + +V +D ++PGCPP+A+A
Sbjct: 96 RNHLDLASCLTEVYLTEPGLEHGHIPNDPELPLPLDKVHPLHEVVKIDYFIPGCPPSADA 155
Query: 166 L 166
+
Sbjct: 156 I 156
>gi|189501050|ref|YP_001960520.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobium
phaeobacteroides BS1]
gi|189496491|gb|ACE05039.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobium
phaeobacteroides BS1]
Length = 254
Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 30/130 (23%)
Query: 59 TFGLACC---------AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
+F CC + A + D+ F D+ +V G++T +
Sbjct: 15 SFDFTCCEGCQLQLANHESSLPAFLELLDIRNFREISSERHDDYDIALVEGSITRQDE-- 72
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGY------YHYSYSV-------------VRGCDRIV 150
+ R+ + +++ GSCA GG + +V VR +V
Sbjct: 73 VERLETIRKNAKVLVAYGSCACFGGVNSLKNNFPLDQAVREVYGDKSVDTLPVRKISDVV 132
Query: 151 PVDIYVPGCP 160
VD +PGCP
Sbjct: 133 KVDYSIPGCP 142
>gi|159905361|ref|YP_001549023.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
maripaludis C6]
gi|159886854|gb|ABX01791.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
maripaludis C6]
Length = 288
Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 34/116 (29%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------- 134
DV +V G + ++ L +++ + + VI+ GSCA GG
Sbjct: 52 DVDVFLVEGGVRSEHDEHL--IHEIREKSKVVIAWGSCAAFGGIPGLGNLYDTEKLKETV 109
Query: 135 ---YYHYSYSV------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ V V+ +V D +PGCPP I+ L +
Sbjct: 110 YTTVSTDNPGVIPTDGVPELTTTVKPITEVVKADYVIPGCPPKPALTAGAIVALLE 165
>gi|11498969|ref|NP_070202.1| methylviologen-reducing hydrogenase, subunit gamma (vhuG)
[Archaeoglobus fulgidus DSM 4304]
gi|2649199|gb|AAB89871.1| methylviologen-reducing hydrogenase, subunit gamma (vhuG)
[Archaeoglobus fulgidus DSM 4304]
Length = 293
Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 28/76 (36%)
Query: 123 VISMGSCANGGG----------------YYHYSYSVVR------------GCDRIVPVDI 154
+++ G CA+ GG + + S V D +V VD
Sbjct: 79 LVAFGICASCGGIMGLANLHSKEEILEDVFGSAKSSVGDLRIPEMLEFVKPLDSVVEVDC 138
Query: 155 YVPGCPPTAEALIYGI 170
Y+ GCPPT E +
Sbjct: 139 YIGGCPPTPEQIYNAF 154
>gi|320531016|ref|ZP_08032048.1| putative Hydrogenase-2 small chain [Selenomonas artemidis F0399]
gi|320136765|gb|EFW28715.1| putative Hydrogenase-2 small chain [Selenomonas artemidis F0399]
Length = 362
Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 22/142 (15%)
Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPR--YDLERFGFAPRASPRQSDVMIVAGTL---- 102
+ R+G+ + L C A+E E ++ V G +
Sbjct: 69 FIRSGAPLASDLVLNCIALEYSHVLSAGCGAPFEEHLEKTMEKYHGEYILAVEGGVAVGT 128
Query: 103 --------TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV--RGCDRIVPV 152
+ L+RV + V++ G+CA GG + + RG ++
Sbjct: 129 HAYTCMSGGHSFEHTLKRVAEGAKA---VVAYGTCATSGGIQAAAPNPTESRGIRSLIGA 185
Query: 153 DIYV--PGCPPTAEALIYGILL 172
Y+ PGCPP E ++ G+L+
Sbjct: 186 KPYIAVPGCPPIPE-VMTGVLM 206
>gi|18977703|ref|NP_579060.1| H-II delta (hydrogenase subunit delta) [Pyrococcus furiosus DSM
3638]
gi|7406956|gb|AAF61853.1|AF176650_3 sulfhydrogenase II subunit d [Pyrococcus furiosus DSM 3638]
gi|18893437|gb|AAL81455.1| H-II delta (hydrogenase subunit delta) [Pyrococcus furiosus DSM
3638]
Length = 237
Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 45/127 (35%), Gaps = 30/127 (23%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQS-------DVMIVAGTL-TNKMASALRR 112
CA+ ++ DL F S DV +V GT+ T + LR
Sbjct: 10 DCGGCALNLLFLYDKLLDLLEFYEIAEFHMATSKKSREKIDVALVTGTVSTQRDLEVLR- 68
Query: 113 VYDQMPEPRYVISMGSCANGG---GYYHYS---YSVV-------------RGCDRIVPVD 153
D Y+I++G+CA G G S Y V + VPVD
Sbjct: 69 --DARNRSEYLIALGTCATHGSVQGVIENSKEAYRRVYGNGKPPVKLLNPKPVTDYVPVD 126
Query: 154 IYVPGCP 160
+PGCP
Sbjct: 127 FAIPGCP 133
>gi|83310749|ref|YP_421013.1| Ni,Fe-hydrogenase I small subunit [Magnetospirillum magneticum
AMB-1]
gi|82945590|dbj|BAE50454.1| Ni,Fe-hydrogenase I small subunit [Magnetospirillum magneticum
AMB-1]
Length = 376
Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTA 163
AL+ + VI++GSCA+ GG + G I+ PV + +PGCPP
Sbjct: 141 ALQLTKECAEGAAAVIAIGSCASWGGMPSTPPNPTGSTGVPEILAPKPV-VTIPGCPPNP 199
Query: 164 EALIYGIL 171
+ ++
Sbjct: 200 YNFLSTVV 207
>gi|261402833|ref|YP_003247057.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
vulcanius M7]
gi|261369826|gb|ACX72575.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
vulcanius M7]
Length = 299
Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 43/127 (33%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
+ P D+ ++ G + NK + + + + VI+ G+CA GG
Sbjct: 42 MDVKEIPNDIDIALIEGGIRNKENEEI--AKEMRKKAKIVIAFGTCAVFGGVPGLGNLYS 99
Query: 136 ----YHYSY----------------------SVVRGCDRIVPVDIYVPGCPPTAE----- 164
Y S V+ ++ VD ++PGCPP E
Sbjct: 100 KDEILEKVYKSTLSTKNDEGIIPNEEVPPLTSRVKPLSEVIDVDYFIPGCPPDPELTAKV 159
Query: 165 --ALIYG 169
AL+ G
Sbjct: 160 LSALLEG 166
>gi|257053666|ref|YP_003131499.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
utahensis DSM 12940]
gi|256692429|gb|ACV12766.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
utahensis DSM 12940]
Length = 266
Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 40/114 (35%), Gaps = 24/114 (21%)
Query: 82 FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------ 135
F A + ++ V G + RR+ D V+++GSCA GG
Sbjct: 43 FREAMTEHSDEYEIAFVEGGVATAHDE--RRLTDIRDNADVVVALGSCAAFGGINALRNH 100
Query: 136 ----------------YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
SY + R + ++ V+ +PGCP E + + L
Sbjct: 101 QDFETVKERVYGEDADSITSYPIARPIEDVIEVEYEIPGCPIDREEFLGAVTAL 154
>gi|194334727|ref|YP_002016587.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Prosthecochloris
aestuarii DSM 271]
gi|194312545|gb|ACF46940.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Prosthecochloris
aestuarii DSM 271]
Length = 254
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 21/102 (20%)
Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--- 134
D+ F D+ +V G+++ + ++R+ + + +I+ GSCA GG
Sbjct: 43 DIRNFREISSERHDDYDIALVEGSISREDE--VQRLKAIRNQAKVLIAYGSCACFGGINS 100
Query: 135 -------------YYHYSY---SVVRGCDRIVPVDIYVPGCP 160
Y S+ VR +V VD +PGCP
Sbjct: 101 LKNSFTTEQCVRDVYGDSHVDTLPVRRISDVVNVDFSIPGCP 142
>gi|308751414|gb|ADO44897.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobacter
thermophilus TK-6]
Length = 226
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVR--GCDRI 149
D+ V G+++N+ R+ D ++++G+CA GG +++ D
Sbjct: 49 DISFVEGSVSNREDE--ERILDIRRRSGMLVAIGACAISGGVQSAGNFEGIIKSEPIDAF 106
Query: 150 VPVDIYVPGCPPTAEALIYGILL--LQKK 176
V VD +PGCP E ++ L L K
Sbjct: 107 VKVDYQLPGCPINKE-ILENFLKSILHGK 134
>gi|325294937|ref|YP_004281451.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065385|gb|ADY73392.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 261
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 31/147 (21%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPR-------ASPRQSDVMIVAGTLTNKMASALRRV 113
G + C E++ Y L S + D++ V G++T + +V
Sbjct: 11 GCSGCQCEILNCKDALYKLLGKVEFCYFPLAQDNNSFEEFDILFVEGSVTTDLDE--EKV 68
Query: 114 YDQMPEPRYVISMGSCANGGGY----------------------YHYSYSVVRGCDRIVP 151
+ ++++GSCA GG + + S + IV
Sbjct: 69 KKGRKVSKILVAIGSCACYGGVQAQRNDEVTLEEMLKEVYGTTEFPVNVSKPKAVSEIVK 128
Query: 152 VDIYVPGCPPTAEALIYGILLLQKKIR 178
VD +PGCP + +Y + L ++
Sbjct: 129 VDYELPGCPLDKKQFVYAVAFLLNGVK 155
>gi|2746739|gb|AAB94935.1| NiFe hydrogenase delta subunit [Thermococcus litoralis DSM 5473]
Length = 263
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 43/102 (42%), Gaps = 25/102 (24%)
Query: 91 RQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------- 139
R+ D+ + G++ T + ++++ + + + V+++G+CA GG +
Sbjct: 52 REVDIAFIEGSVSTQEEVELVKKIRE---KAKIVVAVGACATQGGVQSWGKDKELSELWK 108
Query: 140 -----------YSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
+ ++ + VD + GCPP + +Y +
Sbjct: 109 TVYGDAHVKFEPKMAEPVEKYIKVDYKLYGCPPEKKDFLYAL 150
>gi|23015033|ref|ZP_00054823.1| COG1740: Ni,Fe-hydrogenase I small subunit [Magnetospirillum
magnetotacticum MS-1]
Length = 375
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV--PVDIYVPGCPPTAE 164
A++ + VI++GSCA+ GG + G I+ PV + +PGCPP
Sbjct: 141 AMQLTKECAEGAAAVIAIGSCASWGGMPSTPPNPTGATGVAEILGKPV-VTIPGCPPNPY 199
Query: 165 ALIYGIL 171
+ ++
Sbjct: 200 NFLSTVV 206
>gi|150402894|ref|YP_001330188.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
maripaludis C7]
gi|150033924|gb|ABR66037.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
maripaludis C7]
Length = 288
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 34/116 (29%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------- 134
DV +V G + ++ L +++ + + VI+ GSCA GG
Sbjct: 52 DVDVFLVEGGVRSEHDEHL--IHEIREKSKVVIAWGSCAAFGGIPGLGNLYTPEQLKETV 109
Query: 135 ---YYHYSYSV------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ V V+ +V D +PGCPP I+ L +
Sbjct: 110 YTTVSTDNPGVIPTDGVPELTTTVKPITEVVKADYVIPGCPPKPALTAGAIVALLE 165
>gi|134046737|ref|YP_001098222.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus
maripaludis C5]
gi|132664362|gb|ABO36008.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanococcus
maripaludis C5]
Length = 288
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 34/116 (29%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------- 134
DV +V G + ++ L +++ + + VI+ GSCA GG
Sbjct: 52 DVDVFLVEGGVRSEHDEHL--IHEIREKSKVVIAWGSCAAFGGIPGLGNLYSPEQIKETV 109
Query: 135 ---YYHYSYSV------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ V V+ +V D +PGCPP I+ L +
Sbjct: 110 YTTVSTDNPGVIPTDGVPELTTTVKPITEVVKADYVIPGCPPKPALTAGAIVALLE 165
>gi|41018393|sp|Q00409|VHUG_METVO RecName: Full=F420-non-reducing hydrogenase vhu subunit G
gi|1747407|emb|CAA43509.1| methylviologen-reducing hydrogenase subunit [Methanococcus voltae
PS]
Length = 287
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 35/117 (29%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYS-------- 141
+ DV ++ G N+ L +++ + + VI+ G+CA GG YS
Sbjct: 52 ECDVFLIEGGARNEHDEHL--IHEIREKSKVVIAWGTCAVYGGIPGLGNLYSAEQLKKTV 109
Query: 142 -----------------------VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
V IV V+ +PGCPP E I+ L +
Sbjct: 110 YGTETTDNVGELPSDEMVPPLTNSVMPVPSIVDVEYVIPGCPPRPEINAGAIVALLE 166
>gi|315230301|ref|YP_004070737.1| sulfhydrogenase II subunit d [Thermococcus barophilus MP]
gi|315183329|gb|ADT83514.1| sulfhydrogenase II subunit d [Thermococcus barophilus MP]
Length = 263
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 25/102 (24%)
Query: 91 RQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS---------- 139
R+ D+ + G++ T + ++++ + + + V+++GSCA GG +
Sbjct: 52 REVDIAFIEGSVSTKEEIELVKKIRE---KAKIVVAVGSCAVHGGVQSWGKEKELEQLWK 108
Query: 140 -----------YSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
+ ++ + VD + GCPP + +Y +
Sbjct: 109 TVYGDGKVKFEPKMAEPVEKFIKVDYKLYGCPPEKKDFLYAL 150
>gi|301107928|ref|XP_002903046.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098164|gb|EEY56216.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 62
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/45 (57%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV 150
MA +R V+D MP+ V+ MGSCA+GGGYYHYSY+ V G +R V
Sbjct: 1 MALGMRSVHDLMPD---VVFMGSCADGGGYYHYSYAEVYGYNRFV 42
>gi|163846762|ref|YP_001634806.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus
aurantiacus J-10-fl]
gi|222524576|ref|YP_002569047.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus sp.
Y-400-fl]
gi|163668051|gb|ABY34417.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus
aurantiacus J-10-fl]
gi|222448455|gb|ACM52721.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroflexus sp.
Y-400-fl]
Length = 177
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 46/141 (32%)
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
P D ++F P D+ ++ G + + L + R +I+ G CA
Sbjct: 38 VYSPIADAKQF-------PPDVDLTLIEGAIASDEHRELAKT--ARRHSRLIIAFGDCAV 88
Query: 132 GG---------------------------GYYHYSYSVVR-------GCDRIVPVDIYVP 157
G G + +V +I+PVD Y+
Sbjct: 89 TGNVTALRNPLGPARTVLQQVYIEHGDPRGVIPHEPGIVPVLLDKVVPVHQIIPVDYYLS 148
Query: 158 GCPPTA---EALIYGILLLQK 175
GCPP+A AL+ ++ ++
Sbjct: 149 GCPPSAPRIRALLEALIEGRE 169
>gi|261402747|ref|YP_003246971.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
vulcanius M7]
gi|261369740|gb|ACX72489.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
vulcanius M7]
Length = 216
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG-------CD 147
+ +V G + + ++ + + +I++GSCA GG+ + G
Sbjct: 27 IALVGGAVNLDDEKEVEKIMEIRENSKILIAVGSCAVSGGFQRMLIGLENGFPQRFVRIG 86
Query: 148 RIVPVDIYVPGCPP 161
+V VD + GCPP
Sbjct: 87 DVVKVDYAIIGCPP 100
>gi|188496128|ref|ZP_03003398.1| hydrogenase-4 component I [Escherichia coli 53638]
gi|188491327|gb|EDU66430.1| hydrogenase-4 component I [Escherichia coli 53638]
Length = 124
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
Query: 152 VDIYVPGCPPTAEALIYGIL----LLQKKI 177
+D+++PGCPPT A I+G LLQ+KI
Sbjct: 6 IDVWIPGCPPTPAATIHGFAVALGLLQQKI 35
>gi|288817816|ref|YP_003432163.1| NADH ubiquinone oxidoreductase 20 kDa subunit/hydrogenase
[Hydrogenobacter thermophilus TK-6]
gi|288787215|dbj|BAI68962.1| NADH ubiquinone oxidoreductase 20 kDa subunit/hydrogenase
[Hydrogenobacter thermophilus TK-6]
Length = 203
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--YSVVR--GCDRI 149
D+ V G+++N+ R+ D ++++G+CA GG +++ D
Sbjct: 26 DISFVEGSVSNREDE--ERILDIRRRSGMLVAIGACAISGGVQSAGNFEGIIKSEPIDAF 83
Query: 150 VPVDIYVPGCPPTAEALIYGILL--LQKK 176
V VD +PGCP E ++ L L K
Sbjct: 84 VKVDYQLPGCPINKE-ILENFLKSILHGK 111
>gi|332159306|ref|YP_004424585.1| cytochrome-c3 hydrogenase delta chain [Pyrococcus sp. NA2]
gi|331034769|gb|AEC52581.1| cytochrome-c3 hydrogenase delta chain [Pyrococcus sp. NA2]
Length = 263
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 24/99 (24%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR------- 144
D+ + G++ T + ++R+ + V+++G+CA GG +S +
Sbjct: 54 VDIAFIEGSVSTEEEVELVKRIRENAK---IVVAVGACAVQGGVQSWSDRSLEELWKKVY 110
Query: 145 -------------GCDRIVPVDIYVPGCPPTAEALIYGI 170
+ + VD + GCPP +Y +
Sbjct: 111 GDAKVKFQPKKAEPVSKYIKVDYNIYGCPPEKRDFLYAL 149
>gi|75910855|ref|YP_325151.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anabaena variabilis
ATCC 29413]
gi|75704580|gb|ABA24256.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY [Anabaena
variabilis ATCC 29413]
Length = 181
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 98 VAGTLTN------KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
V G +T L+R Y Q + I G V IVP
Sbjct: 88 VTGNVTALRNPLGSAEPVLQRCYIQAVDINPQIPQEP-----GIVPPLLDRVTPVHSIVP 142
Query: 152 VDIYVPGCPPTAEALIYGIL-LLQKK 176
VDIY+PGCPP+A + + LLQ K
Sbjct: 143 VDIYLPGCPPSATRIRAALEPLLQGK 168
>gi|257053168|ref|YP_003131001.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
utahensis DSM 12940]
gi|256691931|gb|ACV12268.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halorhabdus
utahensis DSM 12940]
Length = 191
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 43/156 (27%)
Query: 61 GLACCAVEMMQASMPRYDL-------ERFGFAPRASPRQSDVMIVAGTLTNKMASALRRV 113
G + C +E + DL ++DV I G +TN+ +
Sbjct: 24 GCSGCHMEFLNVDHGLVDLVEEVDIVASHMIVDEKGVPEADVGIAEGVVTNEENVEVAEE 83
Query: 114 YDQMPEPRYVISMGSCANGGG----------------------------YYHYSYSV--- 142
+ + V++ G CA G + V
Sbjct: 84 LRENCDT--VVAWGDCAALRGIMSLRNYQDRDEMLEETFMGEADDESEVPFGDDEGVPKL 141
Query: 143 ---VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
R D + VD+YVPGCPP AE + + L +
Sbjct: 142 LEDARPLDEYIDVDVYVPGCPPDAEVMKESLEALAR 177
>gi|218441072|ref|YP_002379401.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
7424]
gi|218173800|gb|ACK72533.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
7424]
Length = 182
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 44/131 (33%)
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
A ++ P DL+ + P DV +V G + N+ L ++ + VIS
Sbjct: 32 APQVEVVYTPIADLKEY-------PENVDVCLVEGAIANE--DNLELIHQVRKNTKLVIS 82
Query: 126 MGSCANGG-------------------GYYHYSYSV----------------VRGCDRIV 150
G CA GY + V ++
Sbjct: 83 FGDCAVTANVPAMRNMLKNGAEPILERGYLELGDNTPQLPHEPGIVPELLDRVSPVHEVI 142
Query: 151 PVDIYVPGCPP 161
PVD+++PGCPP
Sbjct: 143 PVDLFMPGCPP 153
>gi|147920870|ref|YP_685323.1| coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing
hydrogenase), gamma subunit [uncultured methanogenic
archaeon RC-I]
gi|110620719|emb|CAJ35997.1| coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing
hydrogenase), gamma subunit [uncultured methanogenic
archaeon RC-I]
Length = 305
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 46/160 (28%)
Query: 59 TFGLACCAVEM-----MQASMPRYDLERFGFAP----RASPRQSDVMIVAGTLTNKMASA 109
T+ AC E+ +A +P D F + P ++ V IV+G + + +
Sbjct: 9 TWIGACAGCEISVLDTHEALLPILDKIEFVYIPVLMDTKHIPKATVGIVSGCV--RNSDN 66
Query: 110 LRRVYDQMPEPRYVISMGSCANGGG-------------------------------YYHY 138
L + + ++++GSCA GG Y
Sbjct: 67 LHELLEMRKNVDILVALGSCACFGGTPGMANLYTPEQLLEEVYVTTKSTKNEIQRHPYMD 126
Query: 139 SYSVV----RGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
+ + V VD +PGC P + IL L
Sbjct: 127 GLPTLLPDAKPLSDYVKVDAMIPGCGPRPAMIAQAILSLL 166
>gi|193211989|ref|YP_001997942.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobaculum parvum
NCIB 8327]
gi|193085466|gb|ACF10742.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobaculum parvum
NCIB 8327]
Length = 255
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 31/131 (23%)
Query: 59 TFGLACCAVEMMQASM---------PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
+F CC +Q + D+ F D+ +V G++T +
Sbjct: 15 SFDFTCCEGCQLQLANKESTLPEFLALLDIRNFREISSERLDDYDIALVEGSITRQDE-- 72
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYY--------HYSYSVVRG------------CDRI 149
+ R+ + + +++ G+CA GG V G
Sbjct: 73 VERLKAIRAQAKVLVAYGTCACFGGMNAQKNKFDKEECIRTVYGDKEIDTMQESHKISDF 132
Query: 150 VPVDIYVPGCP 160
V VD +PGCP
Sbjct: 133 VKVDYSIPGCP 143
>gi|17228259|ref|NP_484807.1| hydrogenase small subunit [Nostoc sp. PCC 7120]
gi|17130109|dbj|BAB72721.1| hydrogenase small subunit [Nostoc sp. PCC 7120]
Length = 181
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 47/138 (34%), Gaps = 43/138 (31%)
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
P D++ + P DV++V G + N+ ++ + + +IS G CA
Sbjct: 38 VFSPFADIKEY-------PEGVDVVLVEGAIANEEHLTTIKIVRERSQ--ILISFGDCAV 88
Query: 132 GGGY-------------YHYSY---------------------SVVRGCDRIVPVDIYVP 157
G Y V IVPVDIY+P
Sbjct: 89 TGNVTALRNPLGSAESVLQRCYIQAADINPQIPHEPGIVPSLLDRVTPVHSIVPVDIYLP 148
Query: 158 GCPPTAEALIYGILLLQK 175
GCPP+A + + L +
Sbjct: 149 GCPPSATRIRAALEPLLQ 166
>gi|57234567|ref|YP_181356.1| hydrogenase, group 3, VhuG subunit, putative [Dehalococcoides
ethenogenes 195]
gi|57225015|gb|AAW40072.1| hydrogenase, group 3, VhuG subunit, putative [Dehalococcoides
ethenogenes 195]
Length = 312
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 35/132 (26%)
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
M M + G + ++D+ ++ G + N+ L + + + ++++G+C
Sbjct: 38 MPVLMDHKLFGQKGDGTKPEIPEADLGLITGGIRNEENKEL--ALEMRKKCKIIVALGTC 95
Query: 130 ANGGGY----------------YHYSYSV-----------------VRGCDRIVPVDIYV 156
A GG ++ V D ++ VDI++
Sbjct: 96 ACFGGIPALANLSTTEAMLDQIFNKEKGTDPSSPPSDKSLPKLLDRVYAVDEVIKVDIHL 155
Query: 157 PGCPPTAEALIY 168
PGCPPT ++
Sbjct: 156 PGCPPTPAHIVE 167
>gi|327401725|ref|YP_004342564.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus
veneficus SNP6]
gi|327317233|gb|AEA47849.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus
veneficus SNP6]
Length = 317
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 43/109 (39%)
Query: 118 PEPRYVISMGSCANGGGY------------------------------------------ 135
+ +YV++ GSCA GG
Sbjct: 79 KKCKYVVAYGSCACFGGIPGLANLFPKEKVLKRAYVEAESNEEGETIPSPEIKLDDFTLT 138
Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNVK 184
Y V+ D ++ VD++VPGCPP+ I +L + K I ++
Sbjct: 139 LPEFYESVKPLDAVIDVDLFVPGCPPS-IGTIKELLDVLKLIAEGKQLE 186
>gi|257092623|ref|YP_003166264.1| Hydrogen dehydrogenase [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
gi|257045147|gb|ACV34335.1| Hydrogen dehydrogenase [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
Length = 184
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 43/145 (29%)
Query: 63 ACCAVEMMQA--------SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
C M + R D +R D+ ++ G + N + R +
Sbjct: 19 GCFGCHMSCLDIDERLLDLIERVDFDRSPLTDLKECGPCDIGLIEGGICNAENIHVLREF 78
Query: 115 DQMPEPRYVISMGSCANGGG----------------YYHYSYSVVRG------------- 145
+ + +I++G+CA GG Y VV G
Sbjct: 79 RR--NCKVLIAIGACAVNGGLPAQRNHLDLGLCLQEVYLTGTGVVGGQIPNDPELPLPLD 136
Query: 146 ----CDRIVPVDIYVPGCPPTAEAL 166
+V VD ++PGCPP+ +A+
Sbjct: 137 KVHPIHEVVRVDYFIPGCPPSGDAI 161
>gi|114777305|ref|ZP_01452316.1| NAD-reducing hydrogenase, delta subunit [Mariprofundus ferrooxydans
PV-1]
gi|114552450|gb|EAU54933.1| NAD-reducing hydrogenase, delta subunit [Mariprofundus ferrooxydans
PV-1]
Length = 160
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 37/114 (32%), Gaps = 36/114 (31%)
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YHY 138
+I G L+ + +I++G+CA GG Y
Sbjct: 36 GLIEGGLCNADNVHVLKEFRENCK---IIIAVGACAINGGVPAMRNHFTLKECLEEAYLD 92
Query: 139 SYSV-----------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
V V +V VD Y+PGCPP A+A + + L +
Sbjct: 93 GIGVENPMIPNDVELPLLLSKVHPLHEVVHVDYYLPGCPPPADAFMKVLTDLLE 146
>gi|1032479|emb|CAA55876.1| hydrogenase small subunit [Anabaena variabilis ATCC 29413]
Length = 205
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 98 VAGTLTN------KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVP 151
V G +T L+R Y Q + I G V IVP
Sbjct: 112 VTGNVTALRNPLGSAEPVLQRCYIQAVDINPQIPQEP-----GIVPPLLDRVTPVHSIVP 166
Query: 152 VDIYVPGCPPTAEALIYGIL-LLQKK 176
VDIY+PGCPP+A + + LLQ K
Sbjct: 167 VDIYLPGCPPSATRIRAALEPLLQGK 192
>gi|320354169|ref|YP_004195508.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY
[Desulfobulbus propionicus DSM 2032]
gi|320122671|gb|ADW18217.1| NAD(P)-dependent nickel-iron dehydrogenase subunit HoxY
[Desulfobulbus propionicus DSM 2032]
Length = 177
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 35/113 (30%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR----- 144
P D + + G +++K R++ R++I+MG CA G +VV
Sbjct: 49 PEAVDAVCIEGAVSSKEDE--RKLVVARQRSRFLIAMGDCAVTGNV-PAMRNVVGAERIL 105
Query: 145 --------GCDRIVP-------------------VDIYVPGCPPTAEALIYGI 170
+ ++P VD+++PGCPP A+ L +
Sbjct: 106 RSVYIDQDPLNPLIPADNLPVLNSKALPLHCFVQVDLFIPGCPPAADTLFAAL 158
>gi|46310228|gb|AAS87375.1| NiFe-hydrogenase small subunit [Acaryochloris marina]
Length = 133
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 51/127 (40%)
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTN----KMASALRRVYDQMPEPRYVISMG 127
P D +++ P++ DV +V G + N +M +R +Y+I+ G
Sbjct: 20 VYSPFMDAKQY-------PQEVDVALVEGAIANTDHWEMIHQVRDC------TQYLIAFG 66
Query: 128 SCANGG-------------GYYHYSYSV---------------------VRGCDRIVPVD 153
CA G G SY V+ +VPVD
Sbjct: 67 DCAVTGNVTALRNLLGTAEGVLERSYINLADLVPQIPAEEAIVPPLLDWVKPVHTVVPVD 126
Query: 154 IYVPGCP 160
+Y+PGCP
Sbjct: 127 LYLPGCP 133
>gi|282165443|ref|YP_003357828.1| F420-non-reducing hydrogenase subunit G [Methanocella paludicola
SANAE]
gi|282157757|dbj|BAI62845.1| F420-non-reducing hydrogenase subunit G [Methanocella paludicola
SANAE]
Length = 304
Score = 45.4 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 46/160 (28%)
Query: 59 TFGLACCAVEM-----MQASMPRYDLERFGFAP----RASPRQSDVMIVAGTLTNKMASA 109
++ AC E+ +A +P D F + P P ++ V IV+G + + +
Sbjct: 10 SWMGACAGCEISVLDLHEALLPVLDKIEFVYIPVLMDTKHPPKATVGIVSGGV--RNSDN 67
Query: 110 LRRVYDQMPEPRYVISMGSCANGGG-------------------------------YYHY 138
L + + +I++GSCA GG Y
Sbjct: 68 LHELLEIRKNCDILIALGSCACFGGTPGMANLYDLNALLEEVYMTTKSTKNDINRLPYMD 127
Query: 139 SYSVV----RGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
+ R V VD+ +PGC PT + I+ L
Sbjct: 128 GLPTLMPDMRPASDYVKVDVMIPGCGPTPAMIGAAIMSLL 167
>gi|77993215|dbj|BAE46795.1| bidirectional hydrogenase Y subunit [Nostoc sp. PCC 7422]
Length = 181
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 36/106 (33%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------Y 136
P DV++V G + N+ L+R+ + ++S G CA G
Sbjct: 49 PEGVDVVLVEGAVANE--EHLQRIQTVRERSQILVSFGDCAVTGNVTALRNPLGSAEPVL 106
Query: 137 HYSY--SV-------------------VRGCDRIVPVDIYVPGCPP 161
Y +V V +VPVDIY+PGCPP
Sbjct: 107 QRCYIEAVDIHGQIPYEPGIVPTLLDRVIPVHTVVPVDIYLPGCPP 152
>gi|225848576|ref|YP_002728739.1| quinone-reactive Ni/Fe-hydrogenase small chain (membrane-bound
hydrogenase small subunit)
(hydrogen:quinoneoxidoreductase) [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225643249|gb|ACN98299.1| quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound
hydrogenase small subunit)
(Hydrogen:quinoneoxidoreductase) [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 416
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 16/92 (17%)
Query: 95 VMIVAGTLTNKMASA----------LRRVYDQMPEPRYVISMGSCANGGGY---YHYSYS 141
++ V G++ KM A ++RV + + VI++G+CA+ GG Y
Sbjct: 166 LLFVEGSIPVKMEYAFTTGRHPETGVQRVRRLAKDAKAVIAVGACASFGGVPAAYPNPTG 225
Query: 142 VVRGCDRI--VPVDIYVPGCPPTAEALIYGIL 171
V D + VPV + +P CP ++ I+
Sbjct: 226 AVGVMDVVSGVPV-VNIPACPANPVNIVGVIM 256
>gi|320355403|ref|YP_004196742.1| hydrogenase (NiFe) small subunit HydA [Desulfobulbus propionicus
DSM 2032]
gi|320123905|gb|ADW19451.1| hydrogenase (NiFe) small subunit HydA [Desulfobulbus propionicus
DSM 2032]
Length = 364
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 8/72 (11%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRI-----VPVDIYVPGC 159
L + + P VI++GSCA GG + + I +PV + +PGC
Sbjct: 138 KPVLDILNETAPLAAAVIAIGSCAAWGGVPSADPNPTGATPVHTILKPKGIPV-VNIPGC 196
Query: 160 PPTAEALIYGIL 171
PP + ++
Sbjct: 197 PPNPYNFLSTVI 208
>gi|85857970|ref|YP_460172.1| nickel-dependent hydrogenase, small chain [Syntrophus
aciditrophicus SB]
gi|85721061|gb|ABC76004.1| nickel-dependent hydrogenase, small chain [Syntrophus
aciditrophicus SB]
Length = 253
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 34/139 (24%)
Query: 60 FGLACC-AVEMMQASMPRYDLERFGFAPRASPRQS---------DVMIVAGTLTNKMASA 109
F ACC ++ A++ L+ G R+ DV IV G++T++ A
Sbjct: 13 FDFACCEGCQLQVANLGEALLDILGAIDVVEFREVMSEKWDKNYDVAIVEGSITDEHAE- 71
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGY----------------YHYSYSVV-----RGCDR 148
+R+ +I+ GSCA GG Y Y + R +
Sbjct: 72 -QRIRKIRDRSAVLIAYGSCATIGGVNGMKNSFVLDEIRQSVYGKDYQLFDSKKTRPIHQ 130
Query: 149 IVPVDIYVPGCPP-TAEAL 166
+V VD ++ GCP E +
Sbjct: 131 VVKVDYFINGCPVYHPEVI 149
>gi|289811568|ref|ZP_06542197.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 64
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 158 GCPPTAEALIYGILLLQKKIRRVGN 182
GCPP EA + ++LLQ+ I +
Sbjct: 1 GCPPRPEAYMQALMLLQESIGKERR 25
>gi|332159193|ref|YP_004424472.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus sp.
NA2]
gi|331034656|gb|AEC52468.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus sp.
NA2]
Length = 239
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 31/128 (24%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQS-------DVMIVAGTL-TNKMASALRR 112
CA+ ++ +D+ F S DV IV G++ T + ++
Sbjct: 11 SCGGCALNLLFLYEKLFDVLEFYEIVEFHMATSQRSKEKLDVAIVTGSVSTQRDLEVVK- 69
Query: 113 VYDQMPEPRYVISMGSCANGGGY-----------YHYSYSVVRG---------CDRIVPV 152
+ Y+I++G+CA GG Y +RG VPV
Sbjct: 70 --EARNRAEYLIALGTCATHGGVQGGLENSVKENMKKVYGDIRGPTKVLEPRAVIDYVPV 127
Query: 153 DIYVPGCP 160
D +PGCP
Sbjct: 128 DFAIPGCP 135
>gi|14521156|ref|NP_126631.1| hydrogenase (cytochrome-c3 hydrogenase delta chain) [Pyrococcus
abyssi GE5]
gi|5458374|emb|CAB49862.1| Sulfhydrogenase II, delta chain [Pyrococcus abyssi GE5]
Length = 241
Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 30/133 (22%)
Query: 55 LMWMTFGLAC-----CAVEMMQASMPRYDLERFGFAPRASPRQS-DVMIVAGTL-TNKMA 107
+ +T C E + + YD+ F A R+ DV +V G++ T +
Sbjct: 8 VFELTSCGGCALNILFLYERLFDILEFYDIAEFHMATSQRGREKLDVALVTGSVSTQRDL 67
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYS-YSVVRGCDRI----------------- 149
++ D Y+I++G+CA GG SV G +I
Sbjct: 68 EVVK---DARNRAEYLIALGTCATHGGVQGSIEGSVKEGLRKIYGDMKGPSKVLEPRAVV 124
Query: 150 --VPVDIYVPGCP 160
VPVD +PGCP
Sbjct: 125 EHVPVDFAIPGCP 137
>gi|330837974|ref|YP_004412554.1| hydrogenase (NiFe) small subunit HydA [Selenomonas sputigena ATCC
35185]
gi|329745738|gb|AEB99094.1| hydrogenase (NiFe) small subunit HydA [Selenomonas sputigena ATCC
35185]
Length = 368
Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 100 GTLTNKMASALRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVD 153
G + ++ + +I+ G+CA GG + + G V PV
Sbjct: 130 GVYCMSGGHPFINTFQRVAKDAAAIIAYGTCATSGGIQAAAPNPTGSAGVSHYVGNKPV- 188
Query: 154 IYVPGCPPTAE 164
I VPGCPP E
Sbjct: 189 INVPGCPPIPE 199
>gi|289522158|ref|ZP_06439012.1| NAD-reducing hydrogenase, delta subunit [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503994|gb|EFD25158.1| NAD-reducing hydrogenase, delta subunit [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 179
Score = 45.0 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 34/88 (38%)
Query: 121 RYVISMGSCANGGGY----------------YHYSYSVVRG------------------C 146
+Y+++ G CA GG Y + S V
Sbjct: 77 KYLVAWGDCAVFGGINCMRNFIPKDRVLKEGYIDTASTVNPEGIIPNEDIPELLPRALPL 136
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQ 174
D V VD+YVPGCPP A+ + Y L
Sbjct: 137 DYEVKVDVYVPGCPPDADTIYYVFKELL 164
>gi|256828574|ref|YP_003157302.1| hydrogenase (NiFe) small subunit HydA [Desulfomicrobium baculatum
DSM 4028]
gi|256577750|gb|ACU88886.1| hydrogenase (NiFe) small subunit HydA [Desulfomicrobium baculatum
DSM 4028]
Length = 319
Score = 45.0 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSV--VRGCD---RIVPVD-IYVPGCPPTAEALIY 168
+ +P+ I+ G+CA GG S + +G + + + V+ + VPGCPP L+
Sbjct: 150 EIVPKALATIAYGTCATYGGVQAASPNPTEAKGVNDALKHLGVNAVNVPGCPPNPYNLVG 209
Query: 169 GILLLQ 174
I+ L
Sbjct: 210 TIVHLL 215
>gi|45359258|ref|NP_988815.1| F420-non-reducing hydrogenase subunit [Methanococcus maripaludis
S2]
gi|45048133|emb|CAF31251.1| F420-non-reducing hydrogenase subunit [Methanococcus maripaludis
S2]
Length = 288
Score = 45.0 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 34/116 (29%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------------- 134
DV +V G + ++ L +++ + + VI+ GSCA GG
Sbjct: 52 DVDVFLVEGGVRSEHDEHL--IHEIREKSKVVIAWGSCAAFGGIPGLGNMYTPEQLKETV 109
Query: 135 ---YYHYSYSV------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ V VR +V D +PGCPP I+ L +
Sbjct: 110 YTTVSTDNPGVIPTEGVPELTTEVRAISDVVKADYVIPGCPPKPALTAGAIVALLE 165
>gi|71906620|ref|YP_284207.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dechloromonas
aromatica RCB]
gi|71846241|gb|AAZ45737.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Dechloromonas
aromatica RCB]
Length = 182
Score = 45.0 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 35/114 (30%)
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------- 134
+ D+ I+ G L N + R + + +I+MG+CA GG
Sbjct: 48 IKTCSPDCDIGIIEGGLCNAENVHVLR--EFRKNCKILIAMGACAINGGLPAQRNHLPLT 105
Query: 135 -YYHYSYSV---------------------VRGCDRIVPVDIYVPGCPPTAEAL 166
Y V +V VD ++PGCPP+A+A+
Sbjct: 106 TILEEVYHTSPGLANGMIPNDPELPLPLNQVHPIHEVVKVDYFMPGCPPSADAI 159
>gi|282895628|ref|ZP_06303753.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Raphidiopsis
brookii D9]
gi|281199322|gb|EFA74187.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Raphidiopsis
brookii D9]
Length = 181
Score = 45.0 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 50/132 (37%), Gaps = 43/132 (32%)
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
A ++ P D++ + P DV++V G + N+ L ++ + +IS
Sbjct: 32 ATQVDVVYSPIADIKEY-------PEGVDVVLVEGAIANE--EHLELIHKIRQRTKTIIS 82
Query: 126 MGSCANGGGY---------------------------YHYSYSVVRG-CDRIVPV----- 152
G CA G +S +V DR+VPV
Sbjct: 83 FGDCAVTGNVTAMRNLTGTANVSLQLAYIEGADVNQKIPHSPGIVPPLIDRVVPVHNIVD 142
Query: 153 -DIYVPGCPPTA 163
DIY+PGCPP+A
Sbjct: 143 VDIYLPGCPPSA 154
>gi|260887607|ref|ZP_05898870.1| quinone-reactive Ni/Fe-hydrogenase, small subunit [Selenomonas
sputigena ATCC 35185]
gi|260862623|gb|EEX77123.1| quinone-reactive Ni/Fe-hydrogenase, small subunit [Selenomonas
sputigena ATCC 35185]
Length = 362
Score = 45.0 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 7/71 (9%)
Query: 100 GTLTNKMASALRRVYDQM-PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVD 153
G + ++ + +I+ G+CA GG + + G V PV
Sbjct: 124 GVYCMSGGHPFINTFQRVAKDAAAIIAYGTCATSGGIQAAAPNPTGSAGVSHYVGNKPV- 182
Query: 154 IYVPGCPPTAE 164
I VPGCPP E
Sbjct: 183 INVPGCPPIPE 193
>gi|307721230|ref|YP_003892370.1| hydrogenase (NiFe) small subunit HydA [Sulfurimonas autotrophica
DSM 16294]
gi|306979323|gb|ADN09358.1| hydrogenase (NiFe) small subunit HydA [Sulfurimonas autotrophica
DSM 16294]
Length = 807
Score = 45.0 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 95 VMIVAGTLTNKMASALRRVY-----------DQMPEPRYVISMGSCANGGGYYHYSYSVV 143
++IV G + M RV + VI++GSCA GG S +
Sbjct: 603 ILIVEGAVPMAMDGKFLRVGPKGETGIELLQKCANDAALVIAVGSCAFDGGVVAASPNPT 662
Query: 144 R--GCDRIVP-VDIY-VPGCPPTAEALIYGIL 171
G + + D+ +PGCP ++ +L
Sbjct: 663 GAVGVAQALKREDVINIPGCPTNPTNIVGTLL 694
>gi|296134474|ref|YP_003641721.1| hydrogenase (NiFe) small subunit HydA [Thermincola sp. JR]
gi|296033052|gb|ADG83820.1| hydrogenase (NiFe) small subunit HydA [Thermincola potens JR]
Length = 352
Score = 45.0 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 123 VISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTAEALIYGILLL 173
V+++GSCA GG + + G D+I V I +PGCPP + ++ + L
Sbjct: 147 VVALGSCACYGGLLSVKPNPLDNTGLDKIFTQNKV-INIPGCPPHPDWVVGTLAHL 201
>gi|20093707|ref|NP_613554.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
kandleri AV19]
gi|19886595|gb|AAM01484.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Methanopyrus
kandleri AV19]
Length = 304
Score = 44.6 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 36/126 (28%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
+ P DV+++ G + N+ + + + E V+++G+CA GG
Sbjct: 48 MDTKEIPEDVDVVLIEGGIRNEENVEVAEEFRERAE--IVVAVGTCACYGGVPGLANLYS 105
Query: 136 --------YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYG 169
Y + S VR ++ VD +PGCPP + +
Sbjct: 106 NEELLRTVYVETASTENEDGVIPSEDVPELTWRVRPLSDVIDVDYELPGCPPEPDLIADA 165
Query: 170 ILLLQK 175
+ +
Sbjct: 166 VTAILD 171
>gi|46981403|gb|AAT07677.1| bidirectional hydrogenase small subunit [Lyngbya majuscula CCAP
1446/4]
Length = 182
Score = 44.6 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 50/157 (31%), Gaps = 44/157 (28%)
Query: 61 GLACCAVEMMQASMPRYDLERF--------GFAPRASPRQSDVMIVAGTLTNKMASALRR 112
G + C + + DL G + P DV +V G + N+
Sbjct: 13 GCSGCHMSFLDLDEWLIDLAEKVDVVFSPVGSDIKEFPENVDVCLVEGAVANE--ENFEL 70
Query: 113 VYDQMPEPRYVISMGSCANG----------GG---YYHYSY------------------- 140
+ + +IS G CA GG Y
Sbjct: 71 LKKARERSKLLISFGDCAVTANVPAMRNMLGGSEPVLKRCYLELGDVTPQIPKDPGIVPE 130
Query: 141 --SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
VR +V VD+++PGCPP+A+ + I L +
Sbjct: 131 LLDRVRPIHEVVDVDLFLPGCPPSADRIKAAIAPLLE 167
>gi|110597813|ref|ZP_01386096.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Chlorobium
ferrooxidans DSM 13031]
gi|110340538|gb|EAT59021.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Chlorobium
ferrooxidans DSM 13031]
Length = 251
Score = 44.6 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 21/102 (20%)
Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-- 135
D+ F D+ ++ G+++ + R+ + + +++ G+CA GG
Sbjct: 43 DIRNFREISSEQHDDYDIALIEGSISRSDE--VERLLAIRRQAKVLVAFGTCACFGGVNS 100
Query: 136 ----------YHYSYS-------VVRGCDRIVPVDIYVPGCP 160
Y VR +V VD+ +PGCP
Sbjct: 101 LKNRVSGEAAVSEVYGEIKVETLPVRRISEVVKVDLSIPGCP 142
>gi|1419378|emb|CAA56463.1| hydrogenase small beta subunit [Acetomicrobium flavidum]
Length = 179
Score = 44.6 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 31/88 (35%), Gaps = 34/88 (38%)
Query: 121 RYVISMGSCANGGGY----------------YHYSYSVVR------------------GC 146
+Y+++ G CA GG Y + S V
Sbjct: 77 KYLVAWGDCAVFGGINCMRNFIPKDVVLREGYIETASTVNPQGIVPSEDIPELLPRALPI 136
Query: 147 DRIVPVDIYVPGCPPTAEALIYGILLLQ 174
D V VD+YVPGCPP A+ + Y L
Sbjct: 137 DYEVKVDVYVPGCPPDADTIYYVFKELL 164
>gi|317154278|ref|YP_004122326.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio aespoeensis
Aspo-2]
gi|316944529|gb|ADU63580.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio aespoeensis
Aspo-2]
Length = 328
Score = 44.6 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPVD--IYVPGCPPTAE 164
L + + I+ G+CA+ GG + + +G D + P I VPGCPP
Sbjct: 149 MLENTTKVVEKALATITYGTCASYGGVQKAAPNPTACKGVDELFPGKPIINVPGCPPNPY 208
Query: 165 ALIYGIL 171
+L+ I+
Sbjct: 209 SLVGTIV 215
>gi|225175367|ref|ZP_03729362.1| hydrogenase (NiFe) small subunit HydA [Dethiobacter alkaliphilus
AHT 1]
gi|225169119|gb|EEG77918.1| hydrogenase (NiFe) small subunit HydA [Dethiobacter alkaliphilus
AHT 1]
Length = 344
Score = 44.6 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 11/88 (12%)
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD- 153
+ V G + +AL+ V + + R+VI++G+CA+ GG + S + +PV
Sbjct: 94 LYSVVGWRNGEPLTALQAVQELGAKARHVIAVGTCASFGGPFAASPNPTGS----LPVQS 149
Query: 154 ------IYVPGCPPTAEALIYGILLLQK 175
I VPGCP + ++ ++ L +
Sbjct: 150 VLDNRVINVPGCPVNPDWMMGTLVHLIR 177
>gi|189347574|ref|YP_001944103.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobium limicola
DSM 245]
gi|189341721|gb|ACD91124.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chlorobium limicola
DSM 245]
Length = 252
Score = 44.6 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 30/132 (22%)
Query: 57 WMTFGLACC--------AVE-MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ +F CC E + D+ F DV V G+++
Sbjct: 13 FASFEFTCCEGCQLQLTNREASLAEFFSLLDVRTFREISSEKHDDYDVAFVEGSISRSDE 72
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSV-----------------VRGCDR 148
+ R+ + + +++ G+CA GG Y + VR
Sbjct: 73 --IERLLAIRRQAKTLVAFGTCACFGGVNSLKNRYPIEKCIAEVYDGQPVESLPVRKISD 130
Query: 149 IVPVDIYVPGCP 160
IV VD+ +PGCP
Sbjct: 131 IVKVDLSIPGCP 142
>gi|224368282|ref|YP_002602445.1| HysB [Desulfobacterium autotrophicum HRM2]
gi|223690998|gb|ACN14281.1| HysB [Desulfobacterium autotrophicum HRM2]
Length = 337
Score = 44.6 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 123 VISMGSCANGGGY---------YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
V+++G+CA GG +V + D PV + +PGCPP + ++ I L
Sbjct: 180 VLAVGTCAAYGGIPAAKGNLTQATGVQNVFKKFDITTPV-VNIPGCPPHPDWIVGTIAHL 238
Query: 174 QKK 176
K
Sbjct: 239 LTK 241
>gi|242398275|ref|YP_002993699.1| NiFe hydrogenase I, subunit delta [Thermococcus sibiricus MM 739]
gi|242264668|gb|ACS89350.1| NiFe hydrogenase I, subunit delta [Thermococcus sibiricus MM 739]
Length = 267
Score = 44.6 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 25/106 (23%)
Query: 91 RQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY--------YHYSYS 141
++ D+ + G++ T + ++++ + + + VI++GSCA GG ++ +
Sbjct: 57 KEVDIAFIEGSVSTQEEVELVKKIRE---KAKIVIAVGSCAVHGGVQSWDKDKEFNELWK 113
Query: 142 VVRG-------------CDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
V G ++ + VD + GCPP + +Y + L
Sbjct: 114 TVYGDAHVKFEPKMAEPVEKYIKVDYKLYGCPPEKKDFLYALGTLL 159
>gi|13366096|dbj|BAB39386.1| bidirectional hydrogenase small subunit [Anabaena variabilis]
Length = 181
Score = 44.6 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 36/120 (30%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------Y 136
P+ DV++V G + N + ++ + + ++S G CA G
Sbjct: 49 PQGVDVVLVEGAVANNEHLEMIQIVRERSQ--ILVSFGDCAVTGNVTALRNPLGGAETVL 106
Query: 137 HYSY---------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
Y V ++V VD+Y+PGCPP A + + L K
Sbjct: 107 QRCYIEAADIHNSIPHEPGIVPTLLDRVIPVHKVVAVDVYLPGCPPNATQIKAVLESLLK 166
>gi|298492583|ref|YP_003722760.1| NADH ubiquinone oxidoreductase 20 kDa subunit ['Nostoc azollae'
0708]
gi|298234501|gb|ADI65637.1| NADH ubiquinone oxidoreductase 20 kDa subunit ['Nostoc azollae'
0708]
Length = 167
Score = 44.2 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 33/156 (21%), Positives = 51/156 (32%), Gaps = 43/156 (27%)
Query: 61 GLACCAVEMMQASMPRYDLE-RFGFAPRAS------PRQSDVMIVAGTLTNKMASALRRV 113
G + C + + DL +F P D+++V G N+ L +
Sbjct: 13 GCSGCHMSFLDLDKCLIDLAAKFDLVYSPISDIKAYPEGVDIVLVEGASANEEHLELIHI 72
Query: 114 YDQMPEPRYVISMGSCANGG----------------------------------GYYHYS 139
Q + +I+ G CA G G +
Sbjct: 73 IRQGTKT--IIAFGDCAVTGNVTAIRNPFFSANISLRLAYIEGADVNQQIPHAPGIFPPL 130
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
V IVPVDI +PGCPP+A ++ + L K
Sbjct: 131 LDKVVPVHYIVPVDICLPGCPPSALSICAALEPLIK 166
>gi|320160664|ref|YP_004173888.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1]
gi|319994517|dbj|BAJ63288.1| bidirectional hydrogenase Y subunit [Anaerolinea thermophila UNI-1]
Length = 177
Score = 44.2 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 35/118 (29%)
Query: 90 PRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------- 135
P D+ +V G L T + +R++ ++ +++ G CA
Sbjct: 49 PEDVDITLVEGALGTEEDLQKIRKIRERTK---LLVAFGDCAVTANIPSMRNPFGREEVL 105
Query: 136 ---YHYSYSV-----VRGCDRIVP----------VDIYVPGCPPTAEALIYGILLLQK 175
Y S ++ V+ ++P VD+++PGCPP A+ + + L +
Sbjct: 106 KSLYVESDALNPQIPVQSLPELLPHALPLHHYVHVDVFLPGCPPAADTIYQVLSELIE 163
>gi|253699753|ref|YP_003020942.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M21]
gi|251774603|gb|ACT17184.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M21]
Length = 368
Score = 44.2 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTA 163
A+ + + +IS+G+CA+ GG S + G IV P+ I +PGCPP
Sbjct: 134 AMESLQEAAKGAAAIISIGTCASYGGIQSVSPNPTGAVGVRDIVKDKPI-INIPGCPPNP 192
Query: 164 EALIYGIL 171
+ +L
Sbjct: 193 YNFLSTVL 200
>gi|195952434|ref|YP_002120724.1| hydrogenase (NiFe) small subunit HydA [Hydrogenobaculum sp.
Y04AAS1]
gi|195932046|gb|ACG56746.1| hydrogenase (NiFe) small subunit HydA [Hydrogenobaculum sp.
Y04AAS1]
Length = 356
Score = 44.2 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV---PVDIYVPGCPP 161
L + + VI+ GSCA+ G + + D+++ P+ + +PGCPP
Sbjct: 139 KPFLEGLKKAAEGAKVVIAWGSCASWGCVQAAKPNPTTAVPIDKVITDKPI-VKIPGCPP 197
Query: 162 TAE----ALIYGIL 171
E ++Y +L
Sbjct: 198 IPEVMTGTIMYTVL 211
>gi|217978885|ref|YP_002363032.1| Hydrogen dehydrogenase [Methylocella silvestris BL2]
gi|217504261|gb|ACK51670.1| Hydrogen dehydrogenase [Methylocella silvestris BL2]
Length = 190
Score = 44.2 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 36/118 (30%)
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG---------------- 134
R DV V G +N+ ++ + + R ++S+G+CA GG
Sbjct: 60 RPVDVGFVEGGCSNEY--NVKELIEFRKHCRILVSVGACAINGGVPAMRNTVGLRECLEA 117
Query: 135 YYHYSYSVVRG------------CDRIVP------VDIYVPGCPPTAEALIYGILLLQ 174
Y + S+ G DR+ P +D ++PGCPP+ +A+ + L
Sbjct: 118 VYLHGVSLEGGGMIPNDEDLPLLLDRVYPSHEVVKIDYFLPGCPPSGDAIWAALKALL 175
>gi|149194374|ref|ZP_01871471.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter
mediatlanticus TB-2]
gi|149135549|gb|EDM24028.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Caminibacter
mediatlanticus TB-2]
Length = 282
Score = 44.2 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 20/100 (20%)
Query: 91 RQSDVMIVAGTL---TNKMASALRRVYDQMP-EPRYVISMGSCANGGGYYHYSYSVV--- 143
++SD++I+ G L + L ++ +++ ++VI +G+C++ GG + V+
Sbjct: 50 KKSDILIIEGALREGFKRNNKNLIKLIEELIINSKFVICLGTCSSYGGIFGEG--VMFNK 107
Query: 144 --RGC-----DRIVPVDIYVPGCPPTAEALIYGILLLQKK 176
G D+I+ +PGCPP L Y + +++++
Sbjct: 108 KENGIFYDYKDKII----NIPGCPPHPNWLGYVLYMIKEQ 143
>gi|18977265|ref|NP_578622.1| sulfhydrogenase delta subunit [Pyrococcus furiosus DSM 3638]
gi|562776|emb|CAA53036.1| hydrogenase (delta subunit) [Pyrococcus furiosus DSM 3638]
gi|18892934|gb|AAL81017.1| sulfhydrogenase delta subunit [Pyrococcus furiosus DSM 3638]
Length = 261
Score = 44.2 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 24/101 (23%)
Query: 91 RQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR----- 144
+ D+ + G++ T + ++++ + V+++G+CA GG +S +
Sbjct: 50 EKVDIAFIEGSVSTEEEVELVKKIRENAK---IVVAVGACAVQGGVQSWSEKPLEELWKK 106
Query: 145 ---------------GCDRIVPVDIYVPGCPPTAEALIYGI 170
+ + VD + GCPP + +Y +
Sbjct: 107 VYGDAKVKFQPKKAEPVSKYIKVDYNIYGCPPEKKDFLYAL 147
>gi|289432499|ref|YP_003462372.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
GT]
gi|288946219|gb|ADC73916.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dehalococcoides sp.
GT]
Length = 312
Score = 44.2 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 35/108 (32%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG------------YYHYS 139
++D+ I+ G + + + + + ++++G+CA GG
Sbjct: 60 EADLGIITGGI--RNEENRELALEMRKKCKIIVALGTCACFGGIPALANLSTTEEMMEQI 117
Query: 140 YSVVRG---------------------CDRIVPVDIYVPGCPPTAEAL 166
YS +G D ++ VDI++PGCPPT +
Sbjct: 118 YSKEKGTEKSDSPSDKSLPKMLDRVYAVDEMIKVDIHLPGCPPTPAHI 165
>gi|270307974|ref|YP_003330032.1| nickel-dependent hydrogenase, group 3, small subunit
[Dehalococcoides sp. VS]
gi|270153866|gb|ACZ61704.1| nickel-dependent hydrogenase, group 3, small subunit
[Dehalococcoides sp. VS]
Length = 312
Score = 44.2 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 35/132 (26%)
Query: 70 MQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSC 129
M M L + G + ++D+ I+ G + + + + + ++++G+C
Sbjct: 38 MPVLMDHKLLGQKGDGIKYEIPEADLGIITGGI--RNEENRELALEMRKKCKLIVALGTC 95
Query: 130 ANGGG----------------YYHYSYSV-----------------VRGCDRIVPVDIYV 156
A GG + V D I+ VDI++
Sbjct: 96 ACFGGIPALANLSTTEDMLKQVFSKEKGTDPASPPGDKSLPKMLDRVYAVDEIITVDIHL 155
Query: 157 PGCPPTAEALIY 168
PGCPPT ++
Sbjct: 156 PGCPPTPAHIVE 167
>gi|71909584|ref|YP_287171.1| Ni-Fe hydrogenase, small subunit:twin-arginine translocation
pathway signal [Dechloromonas aromatica RCB]
gi|71849205|gb|AAZ48701.1| Ni-Fe hydrogenase, small subunit:Twin-arginine translocation
pathway signal [Dechloromonas aromatica RCB]
Length = 394
Score = 44.2 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 127 GSCANGGGY--YHYSYSVVRGCDRIV--PVDIYVPGCPPTAEALIYGIL 171
GSCA+ GG + + +G D+++ PV + +PGCPP + ++
Sbjct: 166 GSCASWGGMPSTDPNPTGAKGVDKVLGKPV-VTIPGCPPNPYNFLSTVV 213
>gi|218193059|gb|EEC75486.1| hypothetical protein OsI_12075 [Oryza sativa Indica Group]
Length = 396
Score = 44.2 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 37 GFLVTSVDQLVTWARTGSLMWMTFG 61
F+++ VD L+ WAR GS+ MTFG
Sbjct: 294 EFVISKVDDLMNWARRGSIWPMTFG 318
>gi|318041121|ref|ZP_07973077.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Synechococcus sp.
CB0101]
Length = 190
Score = 44.2 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
LRR Y ++ + G + G V +VPV++Y+PGCPP A+ +
Sbjct: 113 PVLRRAYLELADG-----SGQLPHAPGIVPELLERVLPVHELVPVEVYLPGCPPPADRIR 167
Query: 168 YGILLLQK 175
+ L +
Sbjct: 168 AALEPLLR 175
>gi|73748452|ref|YP_307691.1| hydrogenase, group 3, VhuG subunit [Dehalococcoides sp. CBDB1]
gi|147669232|ref|YP_001214050.1| F420-non-reducing hydrogenase subunit G [Dehalococcoides sp. BAV1]
gi|73660168|emb|CAI82775.1| hydrogenase, group 3, VhuG subunit [Dehalococcoides sp. CBDB1]
gi|146270180|gb|ABQ17172.1| F420-non-reducing hydrogenase subunit G [Dehalococcoides sp. BAV1]
Length = 312
Score = 44.2 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 38/117 (32%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG------------YYHYS 139
++D+ I+ G + + + + + ++++G+CA GG
Sbjct: 60 EADLGIITGGI--RNEENRELALEMRKKCKIIVALGTCACFGGIPALANLSTTEEMMEQI 117
Query: 140 YSVVRG---------------------CDRIVPVDIYVPGCPPTA---EALIYGILL 172
YS +G D ++ VDI++PGCPPT L+ +L
Sbjct: 118 YSKEKGTEKSDSPSDKSLPKMLDRVYAVDEMIKVDIHLPGCPPTPTHIAELLGAVLE 174
>gi|257791028|ref|YP_003181634.1| hydrogenase (NiFe) small subunit HydA [Eggerthella lenta DSM 2243]
gi|317488257|ref|ZP_07946824.1| hydrogenase small subunit [Eggerthella sp. 1_3_56FAA]
gi|325830791|ref|ZP_08164175.1| putative hydrogenase-2 small chain [Eggerthella sp. HGA1]
gi|257474925|gb|ACV55245.1| hydrogenase (NiFe) small subunit HydA [Eggerthella lenta DSM 2243]
gi|316912639|gb|EFV34181.1| hydrogenase small subunit [Eggerthella sp. 1_3_56FAA]
gi|325487198|gb|EGC89641.1| putative hydrogenase-2 small chain [Eggerthella sp. HGA1]
Length = 410
Score = 43.8 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 10/70 (14%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV-------PVDIYVP 157
+ + + V+++GSCA GG+ + G + PV + VP
Sbjct: 146 KPGTEHLIEAAEKANAVVALGSCAVNGGWMGAHPNQAGALGVQAFLKKAGINTPV-VNVP 204
Query: 158 GCPPTAEALI 167
GCP E L+
Sbjct: 205 GCPANPEWLV 214
>gi|171058144|ref|YP_001790493.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Leptothrix cholodnii
SP-6]
gi|170775589|gb|ACB33728.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Leptothrix cholodnii
SP-6]
Length = 191
Score = 43.8 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 44/128 (34%)
Query: 73 SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG 132
P D+++ G D+ ++ G L N + + + + ++++G+CA
Sbjct: 51 RSPLTDIKQIG--------HCDLGLIEGGLCNSENVVVLKEFRAHCKT--LVAVGACAIN 100
Query: 133 GG------------YYHYSYSVVRG--CDRIVP--------------------VDIYVPG 158
GG H Y G ++P VD ++PG
Sbjct: 101 GGLPAQRNHLDLAQMLHDVYQSRPGMTVGSVIPNDPELPLPLNKVHPIHEVVHVDYFLPG 160
Query: 159 CPPTAEAL 166
CPP+A+A
Sbjct: 161 CPPSADAF 168
>gi|258406379|ref|YP_003199121.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfohalobium
retbaense DSM 5692]
gi|257798606|gb|ACV69543.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfohalobium
retbaense DSM 5692]
Length = 334
Score = 43.8 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 136 YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
+H S VR ++V VD ++PGCPPT E ++
Sbjct: 147 FHDS---VRALHQVVDVDYFLPGCPPTPERILD 176
>gi|296132285|ref|YP_003639532.1| hydrogenase (NiFe) small subunit HydA [Thermincola sp. JR]
gi|296030863|gb|ADG81631.1| hydrogenase (NiFe) small subunit HydA [Thermincola potens JR]
Length = 362
Score = 43.8 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 115 DQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVPVDIY-VPGCPPTAEALIYGIL 171
+ YV+++G+CA+ GG + + +G ++ + +PGCP + ++ I+
Sbjct: 144 EAATNAAYVVAVGTCASFGGIPAADPNPTQCKGVADVIGGTVVNIPGCPAHPDWIVGTIV 203
>gi|288561163|ref|YP_003424649.1| methyl viologen-reducing hydrogenase gamma subunit MvhG
[Methanobrevibacter ruminantium M1]
gi|288543873|gb|ADC47757.1| methyl viologen-reducing hydrogenase gamma subunit MvhG
[Methanobrevibacter ruminantium M1]
Length = 308
Score = 43.8 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 44/120 (36%)
Query: 94 DVMIVAGTL----TNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YH 137
DV+IV G + ++A LR + VI+ G+CA GG
Sbjct: 56 DVLIVEGGIRNEENRELAEMLRE------KAGLVIAYGTCAAYGGIPGLGNLHTVEELTT 109
Query: 138 YSY----------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
Y S VR + VD+ +PGCPP ++ + IL L
Sbjct: 110 EGYINSCSTVNPEGIIPNEDVPTLESRVRPLGEAIQVDLLIPGCPPKSDVVAEAILTLLN 169
>gi|222445297|ref|ZP_03607812.1| hypothetical protein METSMIALI_00925 [Methanobrevibacter smithii
DSM 2375]
gi|261350142|ref|ZP_05975559.1| f420-non-reducing hydrogenase subunit G [Methanobrevibacter smithii
DSM 2374]
gi|222434862|gb|EEE42027.1| hypothetical protein METSMIALI_00925 [Methanobrevibacter smithii
DSM 2375]
gi|288860928|gb|EFC93226.1| f420-non-reducing hydrogenase subunit G [Methanobrevibacter smithii
DSM 2374]
Length = 308
Score = 43.8 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 36/92 (39%)
Query: 119 EPRYVISMGSCANGGGY----------------YHYSYSVVRGCDRIVP----------- 151
+ + VI+ G+C+ GG Y S S V + I+P
Sbjct: 79 KAKLVIAYGTCSCYGGIPGLGNLWTVDELEQEAYINSCSTVNP-EGIIPNEDVPALESRV 137
Query: 152 --------VDIYVPGCPPTAEALIYGILLLQK 175
VD+ +PGCPP ++ + +L L +
Sbjct: 138 RPLSSAMDVDLIIPGCPPRSDVVAEAVLTLLR 169
>gi|303245125|ref|ZP_07331441.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
gi|302484508|gb|EFL47456.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
okinawensis IH1]
Length = 300
Score = 43.8 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 36/126 (28%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------- 135
+ P + D+ I+ G + NK + + + VI+ G+CA GG
Sbjct: 42 MDVKEIPDKVDIAIIEGGIRNKENEEI--AKEMRKKADIVIAFGTCAAFGGVPGLGNLYS 99
Query: 136 ----YHYSY----------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYG 169
Y S V+ +I+ VD VPGCPP E
Sbjct: 100 NEEILDKVYKTTLTTENEKGSIPNEEVPELTSRVKPLSQIIDVDFVVPGCPPEPEVTAKV 159
Query: 170 ILLLQK 175
+ +L +
Sbjct: 160 LTMLLE 165
>gi|322420606|ref|YP_004199829.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M18]
gi|320126993|gb|ADW14553.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M18]
Length = 369
Score = 43.8 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTA 163
AL + +I +G+CA+ GG S + G I+ P+ I +PGCPP+
Sbjct: 134 ALESLQHAAEGAAAIICIGTCASYGGIQSVSPNPTGAVGVRDIIKDKPI-INIPGCPPSP 192
Query: 164 EALIYGIL 171
+ +L
Sbjct: 193 YNFLSTVL 200
>gi|147919665|ref|YP_686591.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured
methanogenic archaeon RC-I]
gi|110621987|emb|CAJ37265.1| coenzyme F420-reducing hydrogenase, gamma subunit [uncultured
methanogenic archaeon RC-I]
Length = 232
Score = 43.8 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG--------GGYYHYS-YSVV 143
D++ V G + ++ + ++++ G C++ GG +
Sbjct: 52 VDLLFVDGAACLQSKESVESLKKARENTGFLVAWGGCSSTATINNFSRGGQSPQPQHESF 111
Query: 144 RGCDRIVPVDIYVPGCPPTAEA---LIYGILL 172
R+V VD +VPG PP E +I +
Sbjct: 112 PQISRLVKVDAFVPGSPPGPEMAYNVIRAFVE 143
>gi|51246063|ref|YP_065947.1| hydrogenase, small chain [Desulfotalea psychrophila LSv54]
gi|50877100|emb|CAG36940.1| probable hydrogenase, small chain [Desulfotalea psychrophila LSv54]
Length = 207
Score = 43.8 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 34/120 (28%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
P DV V G +++ A ++ + + ++++G CA G
Sbjct: 79 PEGVDVTFVEGAVSSVDDVAKIQLIRRRSK--VLVALGDCAVTGNVPAMRNEFQVEDILN 136
Query: 136 --YHYSYSV---------------VRGCDRIVPVDIYVPGCPPTAEALIYGILL-LQKKI 177
+ + + V V VD+++PGCPP+++A+ + I LQ +I
Sbjct: 137 RAFIETAACQAQIPMDGVPQLNARVVPIHAHVAVDLFLPGCPPSSDAIFFLISELLQGRI 196
>gi|260575857|ref|ZP_05843853.1| hydrogenase (NiFe) small subunit HydA [Rhodobacter sp. SW2]
gi|259022010|gb|EEW25310.1| hydrogenase (NiFe) small subunit HydA [Rhodobacter sp. SW2]
Length = 358
Score = 43.8 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 57/159 (35%), Gaps = 37/159 (23%)
Query: 44 DQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP----------------- 86
D L + R + C+ + ++ P + F
Sbjct: 44 DALASAGRQSVIWLSFQECTGCSEALTRSFNPTIEDMIFNLISLDYQETLMAVSGEAAEE 103
Query: 87 -RASPRQSD----VMIVAGTL---------TNKMASALRRVYDQMPEPRYVISMGSCANG 132
+ RQ++ V++V G++ TN S L + + + VIS+G+CA
Sbjct: 104 AMQAARQANKGKYVLVVDGSVSTAAGGVYSTNAGKSNLETLKEMAADAMAVISVGTCAAF 163
Query: 133 GGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTAEAL 166
GG + + I+ PV I + GCPP EA+
Sbjct: 164 GGIPMAAPNPTGAVPVSDIISDKPV-INISGCPPIPEAI 201
>gi|119944967|ref|YP_942647.1| hydrogen dehydrogenase [Psychromonas ingrahamii 37]
gi|119863571|gb|ABM03048.1| Hydrogen dehydrogenase [Psychromonas ingrahamii 37]
Length = 433
Score = 43.8 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 35/114 (30%)
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------- 135
+ D+ ++ G + N A+ R + + + +I++GSCA GG
Sbjct: 299 IKTCAPDCDLGLIEGAVCNTENIAVLRHFRESCK--IIIAVGSCAINGGVPSLRNNIDVK 356
Query: 136 ------YHYSYSVVR-----------------GCDRIVPVDIYVPGCPPTAEAL 166
Y +V ++ VD ++PGCPP A+A
Sbjct: 357 DCLDEAYLNGIGLVNPKVPIDKELPYLLEKVYPIHEVIKVDYFLPGCPPPADAF 410
>gi|319790092|ref|YP_004151725.1| coenzyme F420 hydrogenase, subunit gamma [Thermovibrio ammonificans
HB-1]
gi|317114594|gb|ADU97084.1| coenzyme F420 hydrogenase, subunit gamma [Thermovibrio ammonificans
HB-1]
Length = 246
Score = 43.8 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 13/97 (13%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDR- 148
DV V G + + + R V + + + ++++G CA+ GG + + +
Sbjct: 63 HLDVAFVEGAVCIEDRNHARLVRELSEKAKLIVAVGGCASFGGVRRFSRGNQFPQPTHQS 122
Query: 149 IVPVD----------IYVPGCPPTAEALIYGILLLQK 175
VP+ +PGCPP L L L +
Sbjct: 123 FVPITEVELLRGKIKYAIPGCPPNPSLLYSFFLALLE 159
>gi|159899902|ref|YP_001546149.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Herpetosiphon
aurantiacus ATCC 23779]
gi|159892941|gb|ABX06021.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Herpetosiphon
aurantiacus ATCC 23779]
Length = 124
Score = 43.8 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVY-DQMPEPRYVISMGSCANGGGYYHYSYSVVR 144
A+P +D+ ++ G + + AL V+ D + + +I++G + G +
Sbjct: 31 WAATPAHADIFVLTGPIPLLLRPALSNVWRDFIADRAPLIALGRASIDGHPFGR-----G 85
Query: 145 GCDRI--VPVDIYVPGCPPTAEALIYGILLLQK 175
G + + V + G PPT A+ GI+
Sbjct: 86 GLAELPEIQVAAKIDGDPPTVAAIQAGIVQALN 118
>gi|14717801|gb|AAB02350.2| mvhG [Methanothermobacter thermautotrophicus]
Length = 308
Score = 43.8 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 37/119 (31%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
P V+I G + ++ + + + ++VIS G+CA GG
Sbjct: 53 PELDVVIIEGGIVNDENREFAEELRE---KAKFVISYGTCAVYGGIPGLRNLWDKDEVIE 109
Query: 136 --YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
Y S + V+ ++ VD VPGCPP ++ ++ L
Sbjct: 110 EAYINSITTPNEEGVIPSEDVPHLEGRVKPLGEVIDVDFEVPGCPPRSDVAAEAVMALL 168
>gi|297619790|ref|YP_003707895.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
A3]
gi|297378767|gb|ADI36922.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus voltae
A3]
Length = 287
Score = 43.5 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 35/117 (29%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVR----- 144
+ DV ++ G + N+ L V++ + + VI+ GSCA GG YS +
Sbjct: 52 ECDVFLIEGGVRNEHDEHL--VHEIREKSKVVIAWGSCAVYGGIPGLGNLYSSEQLKETV 109
Query: 145 ------------GCDRIVP------------VDIY--VPGCPPTAEALIYGILLLQK 175
D IVP VD+ +PGC P I+ L +
Sbjct: 110 YGTVTTDNIGELPSDEIVPPLTDSVMPVPSIVDVEYVIPGCAPKPALNAAAIVALLE 166
>gi|15679146|ref|NP_276263.1| methyl viologen-reducing hydrogenase, gamma subunit
[Methanothermobacter thermautotrophicus str. Delta H]
gi|41017479|sp|Q50782|MVHG_METTH RecName: Full=F420-non-reducing hydrogenase subunit G; AltName:
Full=Methyl viologen-reducing hydrogenase subunit gamma;
Short=MVH subunit G
gi|2622239|gb|AAB85624.1| methyl viologen-reducing hydrogenase, gamma subunit
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 308
Score = 43.5 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 37/119 (31%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
P V+I G + ++ + + + ++VIS G+CA GG
Sbjct: 53 PELDVVIIEGGIVNDENREFAEELRE---KAKFVISYGTCAVYGGIPGLRNLWDKDEVIE 109
Query: 136 --YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
Y S + V+ ++ VD VPGCPP ++ ++ L
Sbjct: 110 EAYINSITTPNEEGVIPSEDVPHLEGRVKPLGEVIDVDFEVPGCPPRSDVAAEAVMALL 168
>gi|288941584|ref|YP_003443824.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium
vinosum DSM 180]
gi|288896956|gb|ADC62792.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium
vinosum DSM 180]
Length = 180
Score = 43.5 bits (101), Expect = 0.013, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 33/115 (28%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YH 137
P + DV I+ G+++++ R++ + ++S+G CA G +
Sbjct: 52 PARVDVGILEGSISSEDDLEKARLFRERCTR--LVSLGDCAVTGNVPAMRNHFKLADVFD 109
Query: 138 YSY-------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
+Y + V+ V VD++VPGCPP+A+A+ Y + L
Sbjct: 110 RAYRENVTLQPQIPTRRVPALLTPVKPVHGEVKVDVFVPGCPPSADAIWYVLSEL 164
>gi|319789465|ref|YP_004151098.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermovibrio
ammonificans HB-1]
gi|317113967|gb|ADU96457.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermovibrio
ammonificans HB-1]
Length = 257
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 24/113 (21%)
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------YHY 138
+ + D+ +V G+++ ++ +V + + + V+++GSCA GG
Sbjct: 45 HTVPELDLALVEGSVSTELDE--EKVKEVRKKSKVVVAVGSCACYGGVQAQRNDEASLKE 102
Query: 139 SYSVV-------------RGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
V R +V VD +PGCP IY + L ++
Sbjct: 103 MLETVYGGEKLFLKVFKPRPVSEVVRVDYELPGCPLDKRQFIYTVASLLNGVK 155
>gi|14521074|ref|NP_126549.1| cytochrome-c3 hydrogenase delta chain [Pyrococcus abyssi GE5]
gi|5458291|emb|CAB49780.1| hydD-1 cytochrome-c3 hydrogenase delta chain [Pyrococcus abyssi
GE5]
Length = 261
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 24/99 (24%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR------- 144
D+ + G++ T + ++++ + V+++G+CA GG ++ +
Sbjct: 52 VDIAFIEGSVSTEEEVELVKKIRENAK---IVVAVGACAVQGGVQSWTDKSLEELWKTVY 108
Query: 145 -------------GCDRIVPVDIYVPGCPPTAEALIYGI 170
+ + VD + GCPP +Y +
Sbjct: 109 GDAKVKFQPKKAEPVSKYIKVDYNIYGCPPEKRDFLYAL 147
>gi|307824842|ref|ZP_07655065.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter
tundripaludum SV96]
gi|307734200|gb|EFO05054.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylobacter
tundripaludum SV96]
Length = 179
Score = 43.1 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 35/130 (26%)
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--- 135
+R D+ ++ G + N + R + + ++++G+CA GG
Sbjct: 38 FDRSPITDIEHCTNCDIGLIEGGVCNSENVHVLREFRN--NCKILVAVGACAINGGLPAM 95
Query: 136 -------------YHYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEA 165
Y V V IV +D Y+PGCPP+A+
Sbjct: 96 RNHIPLEECLNEAYLDGIGVENPQIPSDIELPLLLNQVHPIHEIVKIDYYLPGCPPSADV 155
Query: 166 LIYGILLLQK 175
+ L +
Sbjct: 156 FWKFLTDLIE 165
>gi|189423223|ref|YP_001950400.1| hydrogenase (NiFe) small subunit HydA [Geobacter lovleyi SZ]
gi|189419482|gb|ACD93880.1| hydrogenase (NiFe) small subunit HydA [Geobacter lovleyi SZ]
Length = 376
Score = 43.1 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTA 163
AL + +IS+G+CA+ GG + G I+ P+ I +PGCPP+
Sbjct: 136 ALESLRKAAEGAAAIISVGTCASYGGIQAAPPNPTGAVGVRDIIKDKPI-INIPGCPPSP 194
Query: 164 EALIYGIL 171
L+ +L
Sbjct: 195 YNLLSTVL 202
>gi|14591103|ref|NP_143178.1| cytochrome-c3 hydrogenase delta chain [Pyrococcus horikoshii OT3]
gi|3257712|dbj|BAA30395.1| 266aa long hypothetical cytochrome-c3 hydrogenase delta chain
[Pyrococcus horikoshii OT3]
Length = 266
Score = 43.1 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 16/99 (16%), Positives = 39/99 (39%), Gaps = 24/99 (24%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR------- 144
D+ + G++ T + ++++ + + V+++G+CA GG ++ +
Sbjct: 57 VDIAFIEGSVSTEEEVELVKKIREN---SKIVVAVGACAVQGGVQSWTDKSLEELWRTVY 113
Query: 145 -------------GCDRIVPVDIYVPGCPPTAEALIYGI 170
+ + VD + GCPP +Y +
Sbjct: 114 GDAKVKFKPKKAEPVSKYIKVDYNIYGCPPEKRDFLYAL 152
>gi|78357177|ref|YP_388626.1| hydrogenase (NiFe) small subunit (hydA) [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78219582|gb|ABB38931.1| hydrogenase (NiFe) small subunit (hydA) [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 294
Score = 43.1 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 16/79 (20%)
Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD------------IYVPGCPPT 162
D + V+++G+CA GG + V V + +PGCPP
Sbjct: 118 DIAAKSAAVLAVGTCAAYGGI----PAAEGNLTEAVSVQQFFEQEGIKTPVVNIPGCPPH 173
Query: 163 AEALIYGILLLQKKIRRVG 181
+ ++ +++ I++ G
Sbjct: 174 PDWIVGTVVVALDAIKKHG 192
>gi|194337504|ref|YP_002019298.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pelodictyon
phaeoclathratiforme BU-1]
gi|194309981|gb|ACF44681.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Pelodictyon
phaeoclathratiforme BU-1]
Length = 258
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 30/130 (23%)
Query: 59 TFGLACCAVEMMQASM---------PRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASA 109
+F CC +Q + D+ F D+ ++ G+++ +
Sbjct: 19 SFDFTCCEGCQLQLANRESTLADFLNLLDIRNFRELSSEQHDDYDIALIEGSISRQDE-- 76
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYY---------HYSYSVVRG----------CDRIV 150
+ R+ + + +++ G+CA GG +V G +V
Sbjct: 77 VERLLKIRQQAKILVAFGTCACFGGINSLKNRFPAREMIDAVYPGMPIETLPVRKISDVV 136
Query: 151 PVDIYVPGCP 160
VD+ +PGCP
Sbjct: 137 KVDLSIPGCP 146
>gi|206890611|ref|YP_002249643.1| F420-non-reducing hydrogenase vhu subunit G [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742549|gb|ACI21606.1| F420-non-reducing hydrogenase vhu subunit G [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 248
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 37/145 (25%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQS---------DVMIVAGTLTNKMASALR 111
C +++ P D+ R+ DV + G++T++ A+
Sbjct: 13 CCEGCQLQVANIGEPLLDV--LDIVQVVEFREVMSEKWDGEFDVAFIEGSITDE--HAVE 68
Query: 112 RVYDQMPEPRYVISMGSCANGGGY----------------YHYSYS-----VVRGCDRIV 150
RV + ++++GSCA GG Y SY + ++V
Sbjct: 69 RVKKIRERSKILVALGSCATIGGVNGMKNSFPLEEVGKYVYGESYKFFPTLQTKAVHQVV 128
Query: 151 PVDIYVPGCP---PTAEALIYGILL 172
PVD ++ GCP P +++ IL
Sbjct: 129 PVDYFINGCPIYQPEFISVLKCILQ 153
>gi|15606279|ref|NP_213658.1| hydrogenase small subunit [Aquifex aeolicus VF5]
gi|2983467|gb|AAC07047.1| hydrogenase small subunit [Aquifex aeolicus VF5]
Length = 349
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
Query: 84 FAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
SP +D + LR + +VI++GSCA+ GG S +
Sbjct: 115 LVVEGSPTPADGGVYCTVGGKSSVDILRETAE---HAAFVIAVGSCASWGGIPKASPNPT 171
Query: 144 R--GCDRIV---PVDIYVPGCPP 161
IV PV + VPGCPP
Sbjct: 172 GAVPVYEIVKDKPV-VNVPGCPP 193
>gi|119357953|ref|YP_912597.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Chlorobium
phaeobacteroides DSM 266]
gi|119355302|gb|ABL66173.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Chlorobium
phaeobacteroides DSM 266]
Length = 254
Score = 43.1 bits (100), Expect = 0.019, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 44/132 (33%), Gaps = 30/132 (22%)
Query: 57 WMTFGLACC---------AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMA 107
+ +F CC + A D+ F D+ V G+++
Sbjct: 13 FASFEFTCCEGCQLQLANHESSLAAFFDLLDVRAFREISSEKHDDYDIAFVEGSISRNDE 72
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGY------YHYSYSV-------------VRGCDR 148
+ R+ + + +++ G+CA GG + + VR
Sbjct: 73 --IERLLTIRRQAKTLVAFGTCACFGGVNSLKNRFPIEECIAEVYDSQPIESLPVRKISD 130
Query: 149 IVPVDIYVPGCP 160
V VD+ +PGCP
Sbjct: 131 FVKVDLSIPGCP 142
>gi|254172034|ref|ZP_04878710.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus sp. AM4]
gi|214033930|gb|EEB74756.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus sp. AM4]
Length = 264
Score = 42.7 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 25/100 (25%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135
D+ + G++ T + ++++ + V+++GSCA GG
Sbjct: 54 VDIAFIEGSVSTEEEVELVKKIRENAK---IVVAVGSCAVQGGVQSWEKDKPLEELWKTV 110
Query: 136 YHYS-----YSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
Y + + + VD + GCPP + +Y +
Sbjct: 111 YGDGKVKFQPKMAEPVSKYIKVDYNIYGCPPEKKDFLYAL 150
>gi|116750954|ref|YP_847641.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116700018|gb|ABK19206.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 324
Score = 42.7 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 41/126 (32%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------- 135
G ++D+ IV+G + + L + R ++++G+CA GG
Sbjct: 52 GEENFIGIPEADIGIVSGGI--RNEEQLEVALKVRAQCRILVALGTCATHGGIPALMNRY 109
Query: 136 -----YHYSYSV------VRGCDRIVP--------------VDIYVPGCPPTAE------ 164
+ Y + +VP VD+Y+ GCPP +
Sbjct: 110 SDEDLFRRYYRTSETTEAAAPPNEVVPRFLDRTYALDEKARVDVYMAGCPPHPDYLGAMF 169
Query: 165 -ALIYG 169
L+ G
Sbjct: 170 RTLLDG 175
>gi|212223683|ref|YP_002306919.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus onnurineus
NA1]
gi|212008640|gb|ACJ16022.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus onnurineus
NA1]
Length = 265
Score = 42.7 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 25/100 (25%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135
D+ + G++ T + ++++ + V+++G+CA GG
Sbjct: 53 VDIAFIEGSVSTEEEVELVKKIRENAK---IVVAVGACATQGGVQSWEKDKSLEELWKAV 109
Query: 136 YHYS-----YSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
Y + + + VD + GCPP + IY I
Sbjct: 110 YGDGKVKFEPKMAEPLENYIKVDYRIYGCPPEKKDFIYAI 149
>gi|212223198|ref|YP_002306434.1| Sulfhydrogenase II, delta chain [Thermococcus onnurineus NA1]
gi|212008155|gb|ACJ15537.1| Sulfhydrogenase II, delta chain [Thermococcus onnurineus NA1]
Length = 246
Score = 42.7 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 46/127 (36%), Gaps = 29/127 (22%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASP-------RQSDVMIVAGTLTNKMASALRRV 113
CA+ ++ +DL F DV +V GT++++ AL +
Sbjct: 14 DCGGCALNILFLYEKLFDLLEFYEITEFHMATSLSEGSHYDVALVTGTVSSQRDLALLK- 72
Query: 114 YDQMPEPRYVISMGSCANGGGY---------------YHYSYSVVRGCD-----RIVPVD 153
+ Y+I++G+CA G Y + +R D V VD
Sbjct: 73 -EARNHSDYLIALGTCATHGSVQASVEGSIREKLKRVYGDEGNPMRALDSKPVVEYVAVD 131
Query: 154 IYVPGCP 160
+PGCP
Sbjct: 132 FALPGCP 138
>gi|307246251|ref|ZP_07528332.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|307255235|ref|ZP_07537050.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|307259669|ref|ZP_07541393.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|306852860|gb|EFM85084.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
1 str. 4074]
gi|306861784|gb|EFM93763.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
9 str. CVJ13261]
gi|306866314|gb|EFM98178.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
Length = 361
Score = 42.7 bits (99), Expect = 0.022, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162
L + + + +I++GSCA GG + + I+P I +PGCPP
Sbjct: 117 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 176
Query: 163 AEALIYGI 170
+ I
Sbjct: 177 PHNFLATI 184
>gi|116749652|ref|YP_846339.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
gi|116698716|gb|ABK17904.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Syntrophobacter
fumaroxidans MPOB]
Length = 300
Score = 42.7 bits (99), Expect = 0.023, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 32/113 (28%)
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------- 135
S ++DV IV+G + + A+ + + + +I+ GSCA GG
Sbjct: 59 SIPRADVGIVSGGIRTEHGLAVAKAVRESCD--ILIANGSCACMGGIPSLANLVPPDVLK 116
Query: 136 ----------------YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL 172
+ V + +VPVDI++PGCPP L L
Sbjct: 117 QGVPNLEHGVEDGDFELPPLTARVAAINEVVPVDIFLPGCPP-PTHLFAAALQ 168
>gi|62632272|gb|AAX89151.1| HoxY [Allochromatium vinosum]
Length = 180
Score = 42.7 bits (99), Expect = 0.023, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 33/115 (28%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YH 137
P + DV I+ G+++++ R++ + ++S+G CA G +
Sbjct: 52 PARVDVGILEGSISSEDDLEKARLFRERCTR--LVSLGDCAVTGNVPAMRNHFKLADVFD 109
Query: 138 YSY-------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
+Y + V+ V VD++VPGCPP+A+A+ + + L
Sbjct: 110 RAYRENVTLQPQIPTRRVPALLTPVKPVHGEVKVDVFVPGCPPSADAIWHVLSEL 164
>gi|308048807|ref|YP_003912373.1| hydrogenase (NiFe) small subunit HydA [Ferrimonas balearica DSM
9799]
gi|307630997|gb|ADN75299.1| hydrogenase (NiFe) small subunit HydA [Ferrimonas balearica DSM
9799]
Length = 382
Score = 42.7 bits (99), Expect = 0.023, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 15/124 (12%)
Query: 52 TGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALR 111
GS L+ E Q +Y L G P A+ + G + L
Sbjct: 117 AGSGWQAEARLS----EAKQQYAGQYLLAVEGAIPTANGGH---FLTIGP---HGHTGLD 166
Query: 112 RVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV--PVDIYVPGCPPTAEALI 167
V++ ++++G+CA+ GG + + G D+++ PV + + GCPP+ + ++
Sbjct: 167 MVHETAENAAAIVAVGTCASFGGVQAAAPNPTGAKGVDKVIHQPV-VNLAGCPPSEKNIV 225
Query: 168 YGIL 171
++
Sbjct: 226 GTLM 229
>gi|193214064|ref|YP_001995263.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroherpeton
thalassium ATCC 35110]
gi|193087541|gb|ACF12816.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Chloroherpeton
thalassium ATCC 35110]
Length = 254
Score = 42.7 bits (99), Expect = 0.023, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 21/88 (23%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135
DV ++ G+++ A + R+ + ++++GSCA GG
Sbjct: 57 DYDVALIEGSISR--ADEVERLKKIRENAKILVALGSCACFGGVNSLKNRFPIEEVVTEV 114
Query: 136 YHYSY---SVVRGCDRIVPVDIYVPGCP 160
Y VR +V VD+ +PGCP
Sbjct: 115 YGDMPKETEPVRRVSDVVKVDLCIPGCP 142
>gi|197119510|ref|YP_002139937.1| [NiFe]-hydrogenase small subunit [Geobacter bemidjiensis Bem]
gi|197088870|gb|ACH40141.1| periplasmically oriented, membrane-bound [NiFe]-hydrogenase small
subunit [Geobacter bemidjiensis Bem]
Length = 368
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTA 163
A+ + + +IS+G+CA+ GG + + G IV P+ I +PGCPP
Sbjct: 134 AMESLQEAAKGAAAIISIGTCASYGGIQSVAPNPTGAVGVRDIVKDKPI-INIPGCPPNP 192
Query: 164 EALIYGIL 171
+ +L
Sbjct: 193 YNFLSTVL 200
>gi|323139688|ref|ZP_08074729.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp.
ATCC 49242]
gi|322395067|gb|EFX97627.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylocystis sp.
ATCC 49242]
Length = 265
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 42/136 (30%), Gaps = 29/136 (21%)
Query: 52 TGSLMWMTFGLAC------CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
++ C C E++ + A D+ +V G++T
Sbjct: 9 RLAVWKFASCDGCQLSLLDCEDEILAVADAVEIAYFPEATRAAISGHYDISLVEGSITTP 68
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGY---------------------YHYSYSVVR 144
R+Y+ +I++G+CA GG Y + +
Sbjct: 69 HD--AERIYEVRRRSSKLITIGACATSGGIQALRNFADVKEYVSIVYARPDYIDTLAAST 126
Query: 145 GCDRIVPVDIYVPGCP 160
VPVD + GCP
Sbjct: 127 PISDHVPVDFELRGCP 142
>gi|190150651|ref|YP_001969176.1| hydrogenase-2 small chain precursor [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307263999|ref|ZP_07545600.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|189915782|gb|ACE62034.1| hydrogenase-2 small chain precursor [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306870688|gb|EFN02431.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
13 str. N273]
Length = 380
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162
L + + + +I++GSCA GG + + I+P I +PGCPP
Sbjct: 136 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 195
Query: 163 A 163
Sbjct: 196 P 196
>gi|325958397|ref|YP_004289863.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
AL-21]
gi|325329829|gb|ADZ08891.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanobacterium sp.
AL-21]
Length = 303
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 41/112 (36%), Gaps = 36/112 (32%)
Query: 84 FAPRASPRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY------- 135
+ P D+ IV+G++ + L + + + + VI+ G+CA GG
Sbjct: 42 MDVKEIPENIDIAIVSGSVRNEENKERLEEIRE---KAKIVIAYGTCACYGGITCMADLY 98
Query: 136 ---------YHYSYSVVRG------CDRIVPV----------DIYVPGCPPT 162
+ + S +++P+ D Y+PGCPP
Sbjct: 99 SPEDVSNRSFKDNPSTESAPEPSEVVPKLLPIVHPAGDLALIDYYLPGCPPK 150
>gi|307261817|ref|ZP_07543482.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|306868481|gb|EFN00293.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
Length = 380
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162
L + + + +I++GSCA GG + + I+P I +PGCPP
Sbjct: 136 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 195
Query: 163 A 163
Sbjct: 196 P 196
>gi|282165163|ref|YP_003357548.1| F420-non-reducing hydrogenase subunit G [Methanocella paludicola
SANAE]
gi|282157477|dbj|BAI62565.1| F420-non-reducing hydrogenase subunit G [Methanocella paludicola
SANAE]
Length = 306
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 33/100 (33%)
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YHYSYSV------ 142
+ + RV + + VI+ G+CA GG Y S S
Sbjct: 61 RNKENMERVKKLRQKAKTVIAYGTCACFGGVSGLSIIHSRDEILSSVYTDSVSTTSKTIP 120
Query: 143 --------VRG--CDRIVPVDIYVPGCPPTAEALIYGILL 172
RG ++ VD Y+ GCPP E + ILL
Sbjct: 121 KDDIPELLYRGYAVGDVIKVDYYITGCPPK-ETFLRKILL 159
>gi|165976756|ref|YP_001652349.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|303250583|ref|ZP_07336780.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|303253087|ref|ZP_07339237.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|307248364|ref|ZP_07530387.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|307250590|ref|ZP_07532532.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|307252971|ref|ZP_07534859.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|307257397|ref|ZP_07539167.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|165876857|gb|ABY69905.1| Ni, Fe-hydrogenase I small subunit [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|302648072|gb|EFL78278.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|302650571|gb|EFL80730.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306855102|gb|EFM87282.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
2 str. S1536]
gi|306857406|gb|EFM89520.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
4 str. M62]
gi|306859609|gb|EFM91634.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
6 str. Femo]
gi|306864247|gb|EFM96160.1| Hydrogenase-2 small chain [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
Length = 380
Score = 42.7 bits (99), Expect = 0.024, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162
L + + + +I++GSCA GG + + I+P I +PGCPP
Sbjct: 136 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 195
Query: 163 A 163
Sbjct: 196 P 196
>gi|332295190|ref|YP_004437113.1| hydrogenase (NiFe) small subunit HydA [Thermodesulfobium narugense
DSM 14796]
gi|332178293|gb|AEE13982.1| hydrogenase (NiFe) small subunit HydA [Thermodesulfobium narugense
DSM 14796]
Length = 356
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 71 QASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM---ASALRRVYDQMPEPRYVISMG 127
P Y L G P A P AGT+++ + + + VI++G
Sbjct: 103 AMKTPGYVLVVEGSIPTADPLFCT----AGTMSDTNPARRPVVETLKEAYKNAAVVIALG 158
Query: 128 SCANGGGYYHYSYSVVRGCDRIV---PVDIYVPGCPPTAEALI 167
SCA+ GG + S RG IV V I +P CP + L+
Sbjct: 159 SCASWGGVVQATPSKGRGVSDIVGKEKV-INLPMCPCNPDHLV 200
>gi|126208795|ref|YP_001054020.1| hydrogenase 2 small subunit [Actinobacillus pleuropneumoniae L20]
gi|126097587|gb|ABN74415.1| hydrogenase-2 small chain precursor [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 380
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162
L + + + +I++GSCA GG + + I+P I +PGCPP
Sbjct: 136 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 195
Query: 163 A 163
Sbjct: 196 P 196
>gi|239906199|ref|YP_002952938.1| NiFe hydrogenase small subunit [Desulfovibrio magneticus RS-1]
gi|239796063|dbj|BAH75052.1| NiFe hydrogenase small subunit [Desulfovibrio magneticus RS-1]
Length = 314
Score = 42.3 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVD-------IYVPGC 159
L P+ + VI +G+CA GG + + + V I + GC
Sbjct: 142 HPMLATTKKLAPKAKGVICIGTCAAYGGIQKAKPNPSQS----ISVTEATGLATINIAGC 197
Query: 160 PPTAEALIYGILLLQKK 176
PP I ++ + +K
Sbjct: 198 PPNPINFIGAVVHVLEK 214
>gi|53728952|ref|ZP_00134401.2| COG1740: Ni,Fe-hydrogenase I small subunit [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 361
Score = 42.3 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYVPGCPPT 162
L + + + +I++GSCA GG + + I+P I +PGCPP
Sbjct: 117 KPVLEHIKEAAKDAMAIIAIGSCAAWGGVPSSGNNPTGASSLSDILPGMPIINIPGCPPN 176
Query: 163 A 163
Sbjct: 177 P 177
>gi|316931882|ref|YP_004106864.1| hydrogenase (NiFe) small subunit HydA [Rhodopseudomonas palustris
DX-1]
gi|315599596|gb|ADU42131.1| hydrogenase (NiFe) small subunit HydA [Rhodopseudomonas palustris
DX-1]
Length = 370
Score = 42.3 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV---PVDIYVPGCPP 161
+ ++ + + VI+ GSCA+ G + + D+++ PV I VPGCPP
Sbjct: 139 RPFVEKLKEMAEDSLAVIAWGSCASWGCVQAAKPNPTNATPIDKVIRNKPV-IKVPGCPP 197
Query: 162 TAE 164
AE
Sbjct: 198 IAE 200
>gi|288817413|ref|YP_003431760.1| Ni,Fe-hydrogenase small subunit [Hydrogenobacter thermophilus TK-6]
gi|152061268|dbj|BAF73686.1| Ni,Fe-hydrogenase small subunit [Hydrogenobacter thermophilus]
gi|288786812|dbj|BAI68559.1| Ni,Fe-hydrogenase small subunit [Hydrogenobacter thermophilus TK-6]
gi|308751020|gb|ADO44503.1| hydrogenase (NiFe) small subunit HydA [Hydrogenobacter thermophilus
TK-6]
Length = 345
Score = 42.3 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 33/137 (24%)
Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS-------DVMIVAGT 101
+ R+ S++ L ++E + M GF + R++ ++IV G+
Sbjct: 66 FIRSTSILPSDVLLDYISLEYHETLMSPS-----GFYAEEAKREAIEKYKGKYILIVEGS 120
Query: 102 LTNKMASA---------LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
++ + + + + VI++GSCA+ GG H + PV
Sbjct: 121 VSPRNKGVYCTVSGKSNVELLKEAAQNAGLVIAVGSCASWGGIPHAEPNPTGAV----PV 176
Query: 153 D--------IYVPGCPP 161
+ +PGCPP
Sbjct: 177 SQILGDRQVVNIPGCPP 193
>gi|289192915|ref|YP_003458856.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
sp. FS406-22]
gi|288939365|gb|ADC70120.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanocaldococcus
sp. FS406-22]
Length = 208
Score = 42.3 bits (98), Expect = 0.030, Method: Composition-based stats.
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG-------CD 147
+++V G + + ++ + + +I++GSCA GG+ + G
Sbjct: 27 IVLVGGAVNLDDEEEVNKIKEIRKNAKILIAVGSCAVSGGFQRMLIGLENGFPQRFVRVG 86
Query: 148 RIVPVDIYVPGCPP 161
+V VD + GC P
Sbjct: 87 DVVKVDYAIIGCQP 100
>gi|149194376|ref|ZP_01871473.1| NI/FE-HYDROGENASE SMALL SUBUNIT [Caminibacter mediatlanticus TB-2]
gi|149135551|gb|EDM24030.1| NI/FE-HYDROGENASE SMALL SUBUNIT [Caminibacter mediatlanticus TB-2]
Length = 377
Score = 42.3 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 96 MIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV--P 151
+ G L+R + +I++G+C+ GG + + G +++ P
Sbjct: 152 YLTFGPHAETGLEKLKRTAEAA---GAIIAVGTCSAFGGIQAAAPNPTGAVGIHKVLNKP 208
Query: 152 VDIYVPGCPPTAEALIYGIL 171
V I VPGCPP+A+ ++ IL
Sbjct: 209 V-INVPGCPPSAKNIVGTIL 227
>gi|298241647|ref|ZP_06965454.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ktedonobacter
racemifer DSM 44963]
gi|297554701|gb|EFH88565.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ktedonobacter
racemifer DSM 44963]
Length = 342
Score = 42.3 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRI-------- 149
+TN+ + P+ V++ G+CA GG + + G
Sbjct: 105 DPVTNQPIPTATWIDRLAPKAWAVVAAGTCATYGGIHAMQGNPTGAMGLADYLGKNWRSW 164
Query: 150 --VPVDIYVPGCPPTAEALIYGILLLQ 174
+P+ + VPGCP + + +L L
Sbjct: 165 AGIPI-VNVPGCPVQPDNFMETLLYLL 190
>gi|319790095|ref|YP_004151728.1| hydrogenase (NiFe) small subunit HydA [Thermovibrio ammonificans
HB-1]
gi|317114597|gb|ADU97087.1| hydrogenase (NiFe) small subunit HydA [Thermovibrio ammonificans
HB-1]
Length = 360
Score = 42.3 bits (98), Expect = 0.031, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTA 163
A+ V + + +I++G+C++ GG + + G I+ P+ + VPGCPP
Sbjct: 136 AVEIVKEAAEKALAIITIGTCSSFGGIQAANPNPTGAVGVSEIIKDKPI-VKVPGCPPNP 194
Query: 164 EALIYGIL 171
+ +L
Sbjct: 195 HNFLATVL 202
>gi|282165604|ref|YP_003357989.1| F420-non-reducing hydrogenase small subunit [Methanocella
paludicola SANAE]
gi|282157918|dbj|BAI63006.1| F420-non-reducing hydrogenase small subunit [Methanocella
paludicola SANAE]
Length = 375
Score = 42.3 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 16/85 (18%)
Query: 99 AGTLTNKMASALRRVY-DQMPEPRYVISMGSCANGGGYY------------HYSYSVVRG 145
+G A ++++ + P +++ G+CA+ GG S ++G
Sbjct: 138 SGRYCMSGAMPFKQLFTEAAPGASCIVAAGTCASYGGVSRLFRAADAAGVAFGGTSRLKG 197
Query: 146 CDRIVPVD---IYVPGCPPTAEALI 167
VD I VPGCP E L+
Sbjct: 198 AMSRYGVDNKVINVPGCPTHPEWLL 222
>gi|304437853|ref|ZP_07397801.1| quinone-reactive Ni/Fe-hydrogenase [Selenomonas sp. oral taxon 149
str. 67H29BP]
gi|304369153|gb|EFM22830.1| quinone-reactive Ni/Fe-hydrogenase [Selenomonas sp. oral taxon 149
str. 67H29BP]
Length = 379
Score = 41.9 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 123 VISMGSCANGGGYYHYSYSVV--RGCDRIVPVDIYV--PGCPPTAE 164
VI+ G+CA GG + + RG ++ Y+ PGCPP E
Sbjct: 171 VIAYGTCATAGGIQAAAPNPTESRGIRSLIGAKPYIAVPGCPPIPE 216
>gi|238926671|ref|ZP_04658431.1| hydrogenase (acceptor) [Selenomonas flueggei ATCC 43531]
gi|238885617|gb|EEQ49255.1| hydrogenase (acceptor) [Selenomonas flueggei ATCC 43531]
Length = 379
Score = 41.9 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 123 VISMGSCANGGGYYHYSYSVV--RGCDRIVPVDIYV--PGCPPTAE 164
VI+ G+CA GG + + RG ++ Y+ PGCPP E
Sbjct: 171 VIAYGTCATAGGIQAAAPNPTESRGIRSLIGAKPYIAVPGCPPIPE 216
>gi|83312494|ref|YP_422758.1| NAD-reducing hydrogenase moiety large subunit [Magnetospirillum
magneticum AMB-1]
gi|82947335|dbj|BAE52199.1| NAD-reducing hydrogenase hydrogenase moiety small subunit
[Magnetospirillum magneticum AMB-1]
Length = 183
Score = 41.9 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 33/112 (29%)
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------- 134
+ D+ I+ G + N A + +++ + +I+MG+CA GG
Sbjct: 51 IKHCSPDCDLGIIEGGVCN--AENVHVLHEFRKNCKILIAMGACAINGGLPAQRNSLDIR 108
Query: 135 -YYHYSYSV-------------------VRGCDRIVPVDIYVPGCPPTAEAL 166
Y+ V +V +D ++PGCPP+ +A+
Sbjct: 109 DILAAVYAQPGRGVHIPNDPEIPLLLNEVHPLHEVVKIDYFLPGCPPSGDAI 160
>gi|46202099|ref|ZP_00053778.2| COG1941: Coenzyme F420-reducing hydrogenase, gamma subunit
[Magnetospirillum magnetotacticum MS-1]
Length = 183
Score = 41.9 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 33/112 (29%)
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG----------- 134
+ D+ I+ G + N A + +++ + +I+MG+CA GG
Sbjct: 51 IKHCSPDCDLGIIEGGVCN--AENVHVLHEFRKNCKILIAMGACAINGGLPAQRNSLDIR 108
Query: 135 -YYHYSYSV-------------------VRGCDRIVPVDIYVPGCPPTAEAL 166
Y+ V +V +D ++PGCPP+ +A+
Sbjct: 109 DILAAVYAQPGRGVHIPNDPEIPLLLNEVHPLHEVVKIDYFLPGCPPSGDAI 160
>gi|289549181|ref|YP_003474169.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus
DSM 14484]
gi|289182798|gb|ADC90042.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermocrinis albus
DSM 14484]
Length = 284
Score = 41.9 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 21/100 (21%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD---- 147
+ D++IV G + + R + + R+V+++G+CA G + S V G
Sbjct: 57 EIDLLIVEGAVMEED----RSLLELANRARWVMAVGNCAVYGNIPAINNSHVSGLSFRFT 112
Query: 148 ------------RIVPVDIYVPGCPPTAEALIYGILLLQK 175
+PV I + GCP E + +L+L +
Sbjct: 113 EKGGPLKDFVSKGGLPV-INISGCPAHPEWICGTMLMLAE 151
>gi|120405068|ref|YP_954897.1| hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1]
gi|119957886|gb|ABM14891.1| Hydrogen dehydrogenase [Mycobacterium vanbaalenii PYR-1]
Length = 205
Score = 41.9 bits (97), Expect = 0.038, Method: Composition-based stats.
Identities = 38/190 (20%), Positives = 60/190 (31%), Gaps = 58/190 (30%)
Query: 29 ISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER------- 81
++ I T +D V AR G L L C ++ D++
Sbjct: 1 MTDGICSHEMSSTPMDPTVNAAREGKLRVAMISLCGC----WGCTLSFLDMDERILPLLT 56
Query: 82 --------FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
R + R + I G LR D +IS+G+CA G
Sbjct: 57 KVTIHRSSLTDIKRITERCAIGFIEGGVANEDNIETLRHFRDNC---DLLISVGACAVWG 113
Query: 134 GY----------------YHYSYSVVRGCDRIVP--------------------VDIYVP 157
G Y +S + V G + ++P +D ++P
Sbjct: 114 GVPAMRNVFELKDCLAEAYLHSPTAVPGAEPVIPSHPDIPRLTTKVYPCHEVVKMDYFIP 173
Query: 158 GCPPTAEALI 167
GCPP A+A+
Sbjct: 174 GCPPDADAIF 183
>gi|296169065|ref|ZP_06850725.1| coenzyme F420-reducing hydrogenase, gamma subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295896256|gb|EFG75917.1| coenzyme F420-reducing hydrogenase, gamma subunit [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 253
Score = 41.9 bits (97), Expect = 0.039, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 25/111 (22%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135
DV +V G++T + RR+++ + + ++++G+CA GG
Sbjct: 54 DVSLVEGSITTRHDE--RRIHEIRQQSKVLVTIGACATAGGVQALRNFADVTEFASIVYA 111
Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
Y + + V VD +PGCP L+ + L I R +
Sbjct: 112 KPEYIDTLATSTPASAHVEVDYQLPGCPIDRGQLLDTLAALL--IGRKPRL 160
>gi|148643060|ref|YP_001273573.1| methyl viologen-reducing hydrogenase, gamma subunit, MvhG
[Methanobrevibacter smithii ATCC 35061]
gi|148552077|gb|ABQ87205.1| methyl viologen-reducing hydrogenase, gamma subunit, MvhG
[Methanobrevibacter smithii ATCC 35061]
Length = 308
Score = 41.9 bits (97), Expect = 0.041, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 36/92 (39%)
Query: 119 EPRYVISMGSCANGGGY----------------YHYSYSVVRGCDRIVP----------- 151
+ + VI+ G+C+ GG Y S S V + I+P
Sbjct: 79 KAKLVIAYGTCSCYGGIPGLGNLWTVDELEQEAYINSCSTVNP-EGIIPNEDVPALESRV 137
Query: 152 --------VDIYVPGCPPTAEALIYGILLLQK 175
+D+ +PGCPP ++ + +L L +
Sbjct: 138 RPLSSAMDIDLIIPGCPPRSDVVAEAVLTLLR 169
>gi|217970650|ref|YP_002355884.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thauera sp. MZ1T]
gi|217507977|gb|ACK54988.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thauera sp. MZ1T]
Length = 193
Score = 41.9 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 36/121 (29%)
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-------------- 134
D+ ++ G + N + R + + +I++G+CA GG
Sbjct: 61 HCGPCDIGLIEGGVCNAENVHVLREFRA--NCKVLIALGACAVNGGLPAQRNHLELADLL 118
Query: 135 --YYHYSY------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
Y + + V +V +D ++PGCPP+ +A+ + L
Sbjct: 119 QEVYRTGHGLAEGSRIPDDPELPLPLNQVHPVHEVVRIDYFLPGCPPSGDAIWAFLTQLI 178
Query: 175 K 175
+
Sbjct: 179 E 179
>gi|89893542|ref|YP_517029.1| Hup-type Ni,Fe-hydrogenase small subunit [Desulfitobacterium
hafniense Y51]
gi|89332990|dbj|BAE82585.1| Hup-type Ni,Fe-hydrogenase small subunit [Desulfitobacterium
hafniense Y51]
Length = 374
Score = 41.9 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDR 148
R AG ++ + L V + +YV+++G CA GG + + G
Sbjct: 115 RDGGHYNYAGLENGQLITGLDLVRRLGLKAKYVVAVGHCATYGGPVAGYPNPTQSTGVQN 174
Query: 149 IVP---VDIYVPGCPPTAEALIYGILLL 173
I+P V I V GCP + ++ +L L
Sbjct: 175 ILPERRV-INVSGCPAHPDWIMGTLLHL 201
>gi|39934037|ref|NP_946313.1| hydrogenase small chain [Rhodopseudomonas palustris CGA009]
gi|192289564|ref|YP_001990169.1| hydrogenase (NiFe) small subunit HydA [Rhodopseudomonas palustris
TIE-1]
gi|39647885|emb|CAE26405.1| hydrogenase small chain [Rhodopseudomonas palustris CGA009]
gi|192283313|gb|ACE99693.1| hydrogenase (NiFe) small subunit HydA [Rhodopseudomonas palustris
TIE-1]
Length = 370
Score = 41.9 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV---PVDIYVPGCPP 161
+ ++ + + VI+ GSCA+ G + + D+++ PV I VPGCPP
Sbjct: 139 RPFVEKLKEMAEDSMAVIAWGSCASWGCVQAAKPNPTNATPIDKVIRNKPV-IKVPGCPP 197
Query: 162 TAE 164
AE
Sbjct: 198 IAE 200
>gi|219666870|ref|YP_002457305.1| hydrogenase (NiFe) small subunit HydA [Desulfitobacterium hafniense
DCB-2]
gi|219537130|gb|ACL18869.1| hydrogenase (NiFe) small subunit HydA [Desulfitobacterium hafniense
DCB-2]
Length = 375
Score = 41.9 bits (97), Expect = 0.043, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDR 148
R AG ++ + L V + +YV+++G CA GG + + G
Sbjct: 115 RDGGHYNYAGLENGQLITGLDLVRRLGLKAKYVVAVGHCATYGGPVAGYPNPTQSTGVQN 174
Query: 149 IVP---VDIYVPGCPPTAEALIYGILLL 173
I+P V I V GCP + ++ +L L
Sbjct: 175 ILPERRV-INVSGCPAHPDWIMGTLLHL 201
>gi|312136952|ref|YP_004004289.1| f420-non-reducing hydrogenase subunit g [Methanothermus fervidus
DSM 2088]
gi|311224671|gb|ADP77527.1| F420-non-reducing hydrogenase subunit G [Methanothermus fervidus
DSM 2088]
Length = 309
Score = 41.9 bits (97), Expect = 0.044, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 38/90 (42%)
Query: 119 EPRYVISMGSCANGGGY----------------YHYSYSV------------------VR 144
+ +++ G+CA GG Y S S V+
Sbjct: 80 KSDILVAYGTCAVYGGIPGLRNLWRKEKVIEEAYINSPSTPNPDEVIPSEEVPHLEERVK 139
Query: 145 GCDRIVPVDIYVPGCPPT----AEALIYGI 170
+V VD+ +PGCPP AE L+ +
Sbjct: 140 PISEVVDVDLEIPGCPPKSDFAAEVLMKAL 169
>gi|269215939|ref|ZP_06159793.1| hydrogenase-2 small chain [Slackia exigua ATCC 700122]
gi|269130198|gb|EEZ61276.1| hydrogenase-2 small chain [Slackia exigua ATCC 700122]
Length = 409
Score = 41.9 bits (97), Expect = 0.045, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 24/130 (18%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIV-AGTLTNKMASALRRVYDQ--- 116
++C E + A Y +E A R + + ++V G + RV ++
Sbjct: 94 MISCNYNETLSA-AAGYSMEE---ARRQTMEAGNFVLVYEGAVLRGFDDWALRVAEEKGT 149
Query: 117 ------MPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV-------PVDIYVPGCPP 161
+ VI++GSCA GG+ + + G +++ PV I +PGCP
Sbjct: 150 DILAETAEKANAVIAIGSCAVNGGWMAADPNPAGAMGVQQLLEERGIETPV-INIPGCPG 208
Query: 162 TAEALIYGIL 171
E L+ ++
Sbjct: 209 NPEWLVACLV 218
>gi|53803148|ref|YP_115126.1| NAD-reducing hydrogenase subunit delta [Methylococcus capsulatus
str. Bath]
gi|53756909|gb|AAU91200.1| NAD-reducing hydrogenase, delta subunit [Methylococcus capsulatus
str. Bath]
Length = 180
Score = 41.5 bits (96), Expect = 0.046, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 35/107 (32%)
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------Y 136
D+ +V G + N A + + + R ++++G+CA GG Y
Sbjct: 53 VDLGLVEGGVCN--AENVHTLREFRRHCRILVAVGACAINGGLPTLRNPIALEECLQEAY 110
Query: 137 HYSYSV-----------------VRGCDRIVPVDIYVPGCPPTAEAL 166
V V +V VD +PGCPP+A+ +
Sbjct: 111 RDGIGVENPQIPDDVELPLLLDKVHPIHEVVRVDYSLPGCPPSADVI 157
>gi|161503400|ref|YP_001570512.1| hypothetical protein SARI_01474 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864747|gb|ABX21370.1| hypothetical protein SARI_01474 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 330
Score = 41.5 bits (96), Expect = 0.049, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPT 162
L ++ + + +I+ G+CA+ G + + +++ PV I VPGCPP
Sbjct: 102 PFLEKLKRVSADAKAIIAWGACASWGCVQAARPNPTKATPVHKLITDKPV-IKVPGCPPI 160
Query: 163 AEALIYGILL 172
E ++ ++
Sbjct: 161 PE-VMSAVIT 169
>gi|308050850|ref|YP_003914416.1| hydrogenase (NiFe) small subunit HydA [Ferrimonas balearica DSM
9799]
gi|307633040|gb|ADN77342.1| hydrogenase (NiFe) small subunit HydA [Ferrimonas balearica DSM
9799]
Length = 381
Score = 41.5 bits (96), Expect = 0.050, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
+ A +Y L G P A+ + G + + +++ +IS+G
Sbjct: 129 HALHAYKGQYLLAVEGAIPTANGGHFLTVGCKG------HTGMEIIHETAANAAAIISVG 182
Query: 128 SCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPTAEALIYGIL 171
+CA GG + + R D+++ PV + + GCPP+ + ++ ++
Sbjct: 183 TCAAFGGVQAAAPNPTEARPVDKVIHQPV-VNLGGCPPSEKNIVGTLM 229
>gi|304315263|ref|YP_003850410.1| F420-non-reducing hydrogenase, subunit G [Methanothermobacter
marburgensis str. Marburg]
gi|313104137|sp|P60239|MVHG_METTM RecName: Full=F420-non-reducing hydrogenase subunit G; AltName:
Full=Methyl viologen-reducing hydrogenase subunit gamma;
Short=MVH subunit G
gi|302588722|gb|ADL59097.1| F420-non-reducing hydrogenase, subunit G [Methanothermobacter
marburgensis str. Marburg]
Length = 308
Score = 41.5 bits (96), Expect = 0.050, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 37/120 (30%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
P V+I G + ++ + + + ++VIS G+CA GG
Sbjct: 53 PELDVVVIEGGIVNDENREFAEELRE---KAKFVISYGTCAVYGGIPGLRNLWDKDEVIE 109
Query: 136 --YHYSYSV------------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
Y S + V+ ++ VD VPGCPP ++ ++ L K
Sbjct: 110 EAYINSITTPNEEGVIPSEDVPHLEGRVKPLGEVIDVDFEVPGCPPRSDVAAEVVMALLK 169
>gi|303249237|ref|ZP_07335472.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio fructosovorans
JJ]
gi|205831249|sp|P18187|PHNS_DESFR RecName: Full=Periplasmic [NiFe] hydrogenase small subunit;
AltName: Full=NiFe hydrogenlyase small chain; Flags:
Precursor
gi|186883005|gb|AAA23371.2| HynA precursor [Desulfovibrio fructosovorans JJ]
gi|302489348|gb|EFL49301.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio fructosovorans
JJ]
Length = 314
Score = 41.5 bits (96), Expect = 0.050, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPV-DIYVPGCPPTA 163
+ + + +I +G+C+ GG + S +G + V I +PGCPP
Sbjct: 142 HPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNP 201
Query: 164 EALIYGILLLQKK 176
+ ++ + K
Sbjct: 202 INFVGAVVHVLTK 214
>gi|296134472|ref|YP_003641719.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermincola sp. JR]
gi|296033050|gb|ADG83818.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermincola potens
JR]
Length = 244
Score = 41.5 bits (96), Expect = 0.052, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 123 VISMGSCANGGGY--YHYSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQK 175
V+++G+CA GG + + +G +++ I +PGCPP +E +I ++ + +
Sbjct: 149 VLALGTCAAFGGVPAIEPNPTGCQGVSKVLAGQTVINIPGCPPHSEWVIGTLVHVLR 205
>gi|94971263|ref|YP_593311.1| hydrogenase (NiFe) small subunit (hydA) [Candidatus Koribacter
versatilis Ellin345]
gi|94553313|gb|ABF43237.1| hydrogenase (NiFe) small subunit (hydA) [Candidatus Koribacter
versatilis Ellin345]
Length = 401
Score = 41.5 bits (96), Expect = 0.052, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
A++ + + + VI+MGSCA+ GG + G D ++ P+ + +PGCPP
Sbjct: 149 KPAIQVIKETAAKAAAVIAMGSCASWGGVPSADPNPTGAIGVDSVISGKPI-VNLPGCPP 207
Query: 162 TAEALIYGILL 172
L+ +L
Sbjct: 208 NPYNLLATVLE 218
>gi|15004844|ref|NP_149304.1| periplasmic hydrogenase small subunit, dehydrogenase [Clostridium
acetobutylicum ATCC 824]
gi|13021923|gb|AAK11582.1|AF323616_1 HupS [Clostridium acetobutylicum ATCC 824]
gi|14994456|gb|AAK76886.1|AE001438_139 Periplasmic hydrogenase small subunit, dehydrogenase [Clostridium
acetobutylicum ATCC 824]
Length = 291
Score = 41.5 bits (96), Expect = 0.053, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIY-VPGCPPTAEA 165
AL V + +YV+++G+CA+ GG + S+ + ++ ++ +PGCP +
Sbjct: 126 ALEAVKMAGEKAKYVLAVGTCASSGGISAAKPNPSLSKSISEVINHEVINLPGCPCHPDW 185
Query: 166 LIYGILLL 173
++ + L
Sbjct: 186 VVGTLAHL 193
>gi|332703274|ref|ZP_08423362.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
africanus str. Walvis Bay]
gi|332553423|gb|EGJ50467.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
africanus str. Walvis Bay]
Length = 248
Score = 41.5 bits (96), Expect = 0.054, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 29/101 (28%)
Query: 84 FAPRASPRQSDVMIVAGTLTNK-MASALRRVYDQMPEPRYVISMGSCANGGGY------- 135
DV V G++T LRR+ Y++++G+CA GG
Sbjct: 44 VMTGGDIEPCDVAFVEGSVTRPEDTERLRRI---RVNSAYLVALGACAAIGGVNCLKNFM 100
Query: 136 ----------------YHYSYSVVRGCDRIVPVDIYVPGCP 160
+ + R +V VD +PGCP
Sbjct: 101 EEDVYRERVYGSQGRWFATGPA--RPLRSVVAVDAEIPGCP 139
>gi|66361156|pdb|1YQW|A Chain A, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
gi|66361158|pdb|1YQW|B Chain B, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
gi|66361160|pdb|1YQW|C Chain C, Structure Of The Oxidized Unready Form Of Ni-Fe
Hydrogenase
gi|195927485|pdb|3CUR|A Chain A, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
gi|195927487|pdb|3CUR|B Chain B, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
gi|195927489|pdb|3CUR|C Chain C, Structure Of A Double Methionine Mutant Of Ni-Fe
Hydrogenase
gi|195927491|pdb|3CUS|A Chain A, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
gi|195927493|pdb|3CUS|B Chain B, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
gi|195927495|pdb|3CUS|C Chain C, Structure Of A Double IlePHE MUTANT OF NI-Fe Hydrogenase
Refined At 2.2 Angstrom Resolution
gi|254574955|pdb|3H3X|A Chain A, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
gi|254574957|pdb|3H3X|B Chain B, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
gi|254574959|pdb|3H3X|C Chain C, Structure Of The V74m Large Subunit Mutant Of Ni-Fe
Hydrogenase In An Oxidized State
Length = 264
Score = 41.5 bits (96), Expect = 0.055, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPV-DIYVPGCPPTA 163
+ + + +I +G+C+ GG + S +G + V I +PGCPP
Sbjct: 92 HPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNP 151
Query: 164 EALIYGILLLQKK 176
+ ++ + K
Sbjct: 152 INFVGAVVHVLTK 164
>gi|325511288|gb|ADZ22923.1| Periplasmic hydrogenase small subunit, dehydrogenase [Clostridium
acetobutylicum EA 2018]
Length = 291
Score = 41.5 bits (96), Expect = 0.056, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIY-VPGCPPTAEA 165
AL V + +YV+++G+CA+ GG + S+ + ++ ++ +PGCP +
Sbjct: 126 ALEAVKMAGEKAKYVLAVGTCASSGGISAAKPNPSLSKSISEVINHEVINLPGCPCHPDW 185
Query: 166 LIYGIL 171
++ GIL
Sbjct: 186 VV-GIL 190
>gi|66361172|pdb|1YRQ|A Chain A, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
gi|66361174|pdb|1YRQ|B Chain B, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
gi|66361176|pdb|1YRQ|C Chain C, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
gi|66361178|pdb|1YRQ|D Chain D, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
gi|66361180|pdb|1YRQ|F Chain F, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
gi|66361182|pdb|1YRQ|G Chain G, Structure Of The Ready Oxidized Form Of [nife]-Hydrogenase
Length = 264
Score = 41.5 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPV-DIYVPGCPPTA 163
+ + + +I +G+C+ GG + S +G + V I +PGCPP
Sbjct: 92 HPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNP 151
Query: 164 EALIYGILLLQKK 176
+ ++ + K
Sbjct: 152 INFVGAVVHVLTK 164
>gi|147920962|ref|YP_685229.1| coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing
hydrogenase), gamma subunit [uncultured methanogenic
archaeon RC-I]
gi|110620625|emb|CAJ35903.1| coenzyme F420-non-reducing hydrogenase (methyl viologen-reducing
hydrogenase), gamma subunit [uncultured methanogenic
archaeon RC-I]
Length = 306
Score = 41.1 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 37/114 (32%), Gaps = 44/114 (38%)
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------------YSVVRG------- 145
+ + RV + VI+ G+CA GG S Y+ +G
Sbjct: 61 RNKENMERVKKLRQRAKTVIAFGTCACYGGVSGLSILHSRDEILNGVYTNRQGTTTNVIP 120
Query: 146 -------------CDRIVPVDIYVPGCPPT---------AEALIYG-ILLLQKK 176
++ VD Y+ GCPP LI G I LQKK
Sbjct: 121 NQDIPDLLYRGYAVGDVIKVDYYITGCPPKEFFLRQILLP--LIEGRIPDLQKK 172
>gi|94266316|ref|ZP_01290018.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
proteobacterium MLMS-1]
gi|93453070|gb|EAT03549.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
proteobacterium MLMS-1]
Length = 74
Score = 41.1 bits (95), Expect = 0.062, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 145 GCDRIVPVDIYVPGCPPTAEALIYGI--LLLQKKIRRVGNVK 184
+++ VD+++PGCPP A A++ + +L Q+++ + +K
Sbjct: 31 PLHQVIRVDLFLPGCPPPAAAIVQALNAVLAQQELSELPTLK 72
>gi|224372618|ref|YP_002606990.1| quinone-reactive Ni/Fe-hydrogenase small chain [Nautilia
profundicola AmH]
gi|223589273|gb|ACM93009.1| quinone-reactive Ni/Fe-hydrogenase small chain [Nautilia
profundicola AmH]
Length = 377
Score = 41.1 bits (95), Expect = 0.063, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV--PVDIYV 156
T+ + L + + VIS+G+C++ GG + + G +++ PV I V
Sbjct: 154 TMGPHAETGLELLTRAANDAAAVISVGTCSSFGGIQAAAPNPTGAKGVYQVINKPV-INV 212
Query: 157 PGCPPTAEALIYGIL 171
PGCPP+A+ ++ IL
Sbjct: 213 PGCPPSAKNIVGTIL 227
>gi|218780118|ref|YP_002431436.1| hydrogenase (NiFe) small subunit HydA [Desulfatibacillum
alkenivorans AK-01]
gi|218761502|gb|ACL03968.1| Periplasmic (NiFe) hydrogenase, small subunit [Desulfatibacillum
alkenivorans AK-01]
Length = 318
Score = 41.1 bits (95), Expect = 0.064, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 115 DQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPV-DIYVPGCPPTAEALIYGIL 171
+ I MGSCA GG + +G + + I +PGCPP LI I+
Sbjct: 152 EVTKHAMATICMGSCATYGGPQAAKPNPGGYKGVSAALGIKTINIPGCPPNPINLIGTIV 211
Query: 172 --LLQKKI 177
LL K+
Sbjct: 212 NYLLMGKL 219
>gi|51244864|ref|YP_064748.1| methyl viologen-reducing hydrogenase, gamma chain [Desulfotalea
psychrophila LSv54]
gi|50875901|emb|CAG35741.1| related to methyl viologen-reducing hydrogenase, gamma chain
[Desulfotalea psychrophila LSv54]
Length = 313
Score = 41.1 bits (95), Expect = 0.064, Method: Composition-based stats.
Identities = 26/130 (20%), Positives = 46/130 (35%), Gaps = 36/130 (27%)
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPR-YVISMGSCANGGGY-- 135
+ G ++ + IV+G + N+ V ++M + +I++G+CA GG
Sbjct: 49 FGQTGEGLTLEIPEATIGIVSGGVANEEH---IEVLEEMRKKCTILIALGTCATHGGIPA 105
Query: 136 ----------YHYSYSV--------------------VRGCDRIVPVDIYVPGCPPTAEA 165
+ Y V CD V +D+ +PGCPP
Sbjct: 106 LMNGQDRAQSWKEIYQTKTTDPGGEVPNVEVPAPLDRVYACDEKVKIDLQLPGCPPNPAH 165
Query: 166 LIYGILLLQK 175
+ I L +
Sbjct: 166 IAEVIFSLLE 175
>gi|147776273|emb|CAN76475.1| hypothetical protein VITISV_013601 [Vitis vinifera]
Length = 241
Score = 41.1 bits (95), Expect = 0.065, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 21/170 (12%)
Query: 2 GLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTW------ARTGSL 55
G++ + J +D + + F++ ++D W R S
Sbjct: 16 GMSADKILDVRYPEKVEJWGIDINGKISPKSYSGHEFILVAIDYFTKWVKTASYTRLISF 75
Query: 56 MWMTFGLA---CCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLT--------N 104
+F + C + + L+R+G S A T
Sbjct: 76 RVASFIRSHIIYCHG-IPHELISDTLLQRYGIQHHRSSTYKPQTNKAVKATNKNIKRILR 134
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDI 154
+M + +++P +V C + G YS+V G + ++PV+I
Sbjct: 135 RMVETFQDCLEKLPFALWVYQTSFCTSIG---VIPYSLVYGMEAVLPVEI 181
>gi|302878801|ref|YP_003847365.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella
capsiferriformans ES-2]
gi|302581590|gb|ADL55601.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Gallionella
capsiferriformans ES-2]
Length = 182
Score = 41.1 bits (95), Expect = 0.066, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 35/111 (31%)
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG-------------- 134
+ D+ I+ G L N + R + +I++G+CA GG
Sbjct: 51 TCGPCDIGIIEGGLCNAENVHVLREFRANCTT--LIALGACAINGGLPAQRNHLALSTIL 108
Query: 135 --YYHYSYSVVRG-----------------CDRIVPVDIYVPGCPPTAEAL 166
YH + +V G +V +D ++PGCPP+ +A+
Sbjct: 109 EEVYHAQHGLVDGFIPNDPELPLPLNQVHPIHEVVKIDYFIPGCPPSGDAI 159
>gi|148264000|ref|YP_001230706.1| hydrogenase (NiFe) small subunit HydA [Geobacter uraniireducens
Rf4]
gi|146397500|gb|ABQ26133.1| hydrogenase (NiFe) small subunit HydA [Geobacter uraniireducens
Rf4]
Length = 378
Score = 41.1 bits (95), Expect = 0.068, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 127 GSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTAEALIYGIL 171
G+CA+ GG + G IV P+ I +PGCPP+ L+ ++
Sbjct: 159 GTCASYGGIQSVGPNPTGAVGVRDIVKDKPI-INIPGCPPSPYNLLSTVM 207
>gi|260881351|ref|ZP_05893405.1| hydrogenase-2 small chain [Mitsuokella multacida DSM 20544]
gi|260849167|gb|EEX69174.1| hydrogenase-2 small chain [Mitsuokella multacida DSM 20544]
Length = 359
Score = 41.1 bits (95), Expect = 0.069, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 47/140 (33%), Gaps = 18/140 (12%)
Query: 49 WARTGSLMWMTFGLACCAVEMMQA--SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
+ R+GS L+ A+E + E + ++ V G K
Sbjct: 63 FIRSGSPYASDVILSQVALEYDHLLSAASGEPFEAHLEETIQKYKGQYILAVEGAACTKD 122
Query: 107 ---------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRI---VPV 152
+ VI+ G+CA GG + + G PV
Sbjct: 123 NGVYCMSGGHPFTHTLQRAAENAAAVIAYGTCAVSGGIQAANPNPTGSSGITNFTGKTPV 182
Query: 153 DIYVPGCPPTAEALIYGILL 172
+ VPGCPP E ++ G+++
Sbjct: 183 -VNVPGCPPIPE-VMTGVIM 200
>gi|292669350|ref|ZP_06602776.1| quinone-reactive Ni/Fe-hydrogenase [Selenomonas noxia ATCC 43541]
gi|292648985|gb|EFF66957.1| quinone-reactive Ni/Fe-hydrogenase [Selenomonas noxia ATCC 43541]
Length = 362
Score = 41.1 bits (95), Expect = 0.071, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 123 VISMGSCANGGGYYHYSYSVV--RGCDRIVPVDIYV--PGCPPTAE 164
VI+ G+CA GG + + +G + Y+ PGCPP E
Sbjct: 154 VIAYGTCATAGGIQAAAPNPTESKGIRSYIGAKPYIAVPGCPPIPE 199
>gi|269102784|ref|ZP_06155481.1| quinone-reactive Ni/Fe-hydrogenase small chain precursor
[Photobacterium damselae subsp. damselae CIP 102761]
gi|268162682|gb|EEZ41178.1| quinone-reactive Ni/Fe-hydrogenase small chain precursor
[Photobacterium damselae subsp. damselae CIP 102761]
Length = 378
Score = 41.1 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV--PVDIYV 156
T+ NK + + + + ++ +G+C++ GG S + G +V PV I V
Sbjct: 156 TIGNKAETGVDLIKRVTKDAAAIMCVGTCSSFGGVQAASPNPTGAKGVGAVVDLPV-INV 214
Query: 157 PGCPPTAEAL 166
GCPP +
Sbjct: 215 AGCPPNPANI 224
>gi|315229834|ref|YP_004070270.1| sulfhydrogenase II subunit d [Thermococcus barophilus MP]
gi|315182862|gb|ADT83047.1| sulfhydrogenase II subunit d [Thermococcus barophilus MP]
Length = 245
Score = 41.1 bits (95), Expect = 0.075, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 29/127 (22%)
Query: 61 GLACCA------VEMMQASMPRYDLERFGFAPRASPR-QSDVMIVAGTLTNKMASALRRV 113
CA E + + YD++ F A DV IV GT++ + + R
Sbjct: 11 DCGGCALNILFLYEKLFDLLEFYDIKEFHMASSFKEHDHLDVAIVTGTVSCQRDLEVLR- 69
Query: 114 YDQMPEPRYVISMGSCANGGGY---------------YHYSYSVVRGCD-----RIVPVD 153
Y+I++G+CA G Y + ++ D V VD
Sbjct: 70 -HARNYSNYLIALGTCATHGSVQGAVEGKLRDKLEKVYGTRANTMKALDPKPVVEYVAVD 128
Query: 154 IYVPGCP 160
+PGCP
Sbjct: 129 FALPGCP 135
>gi|325294652|ref|YP_004281166.1| hydrogenase (NiFe) small subunit HydA [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065100|gb|ADY73107.1| hydrogenase (NiFe) small subunit HydA [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 358
Score = 41.1 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTA 163
A+ + + +I++G+C+ GG + G I+ P+ I VPGCPP
Sbjct: 136 AVESLKKAAEKAVAIIAIGTCSAYGGIQAAKPNPTGAVGVQDIIKDKPI-INVPGCPPNP 194
Query: 164 EALIYGIL 171
+ IL
Sbjct: 195 HNFLSTIL 202
>gi|212704477|ref|ZP_03312605.1| hypothetical protein DESPIG_02533 [Desulfovibrio piger ATCC 29098]
gi|212672044|gb|EEB32527.1| hypothetical protein DESPIG_02533 [Desulfovibrio piger ATCC 29098]
Length = 317
Score = 41.1 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDR---IVPVDIY---VPGCP 160
L +P+ + V++MG+CA GG + G + + +D+ +PGCP
Sbjct: 143 MLDLCKRVLPKAKAVVTMGTCAAYGGVQAAKPNPTGSVGVNDCFAKLGMDVKAINIPGCP 202
Query: 161 PTAEALIYGILL-LQKK 176
P L+ ++ LQ K
Sbjct: 203 PNPLNLVGTLVAFLQNK 219
>gi|119489271|ref|ZP_01622078.1| hydrogenase small subunit [Lyngbya sp. PCC 8106]
gi|119454745|gb|EAW35890.1| hydrogenase small subunit [Lyngbya sp. PCC 8106]
Length = 182
Score = 41.1 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 38/127 (29%)
Query: 83 GFAPRASPRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANG--------- 132
G + P DV +V G + + L++ + +++IS G CA
Sbjct: 43 GSDIKEFPENVDVCLVEGAVANEENWELLKKARE---RSKFLISFGDCAVTANVPAMRNM 99
Query: 133 -GG---YYHYSY---------------------SVVRGCDRIVPVDIYVPGCPPTAEALI 167
GG Y V +V VD+++PGCPP+A+ +
Sbjct: 100 LGGSEPVLKRCYLELGDVTPQIPKDPGIVPELLDRVCPIHEVVDVDLFLPGCPPSADRIK 159
Query: 168 YGILLLQ 174
I L
Sbjct: 160 AAIAPLL 166
>gi|149194554|ref|ZP_01871650.1| NI/FE-HYDROGENASE SMALL SUBUNIT [Caminibacter mediatlanticus TB-2]
gi|149135298|gb|EDM23778.1| NI/FE-HYDROGENASE SMALL SUBUNIT [Caminibacter mediatlanticus TB-2]
Length = 369
Score = 41.1 bits (95), Expect = 0.078, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 15/82 (18%)
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV-----VRGCDRI-VPVD 153
G L R+ + + +I++G+CA+ GG + + V G D I VP+
Sbjct: 150 GPSGETYKDHLLRL---ASKAKAIIAVGNCASFGGVVAANPNPTGATGVMGVDGINVPI- 205
Query: 154 IYVPGCPPTAEA-----LIYGI 170
I +P CP E ++Y +
Sbjct: 206 INLPACPVNPETMIGVLIMYAL 227
>gi|320352158|ref|YP_004193497.1| F420-non-reducing hydrogenase subunit G [Desulfobulbus propionicus
DSM 2032]
gi|320120660|gb|ADW16206.1| F420-non-reducing hydrogenase subunit G [Desulfobulbus propionicus
DSM 2032]
Length = 330
Score = 40.8 bits (94), Expect = 0.078, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 46/114 (40%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YH 137
D+ V G + + L V + + +++ G+CA GG Y
Sbjct: 62 DLAFVDGMI--RNTENLHTVQVLRAKSKVLVAFGACATLGGIAALGDLHTKEELFRQAYK 119
Query: 138 YSYSVVRG----------------------------CDRIVPVDIYVPGCPPTA 163
S+S D++V VD YV GCPP
Sbjct: 120 DSFSTDNPEGVYPEPEYLLDGKYNLTIPAILDTCSTIDQVVAVDYYVGGCPPHP 173
>gi|313683179|ref|YP_004060917.1| hydrogenase (nife) small subunit hyda [Sulfuricurvum kujiense DSM
16994]
gi|313156039|gb|ADR34717.1| hydrogenase (NiFe) small subunit HydA [Sulfuricurvum kujiense DSM
16994]
Length = 808
Score = 40.8 bits (94), Expect = 0.082, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 15/93 (16%)
Query: 95 VMIVAGTLTNKMASALRRVY-----------DQMPEPRYVISMGSCANGGGYYHYSYSVV 143
V+IV G + M R+ VI++GSCA GG + +
Sbjct: 604 VLIVEGAVPLGMNGKFLRIGPKGETGVDLLRRVAKNAAAVIAVGSCAYDGGVVAAAPNPT 663
Query: 144 R--GCDRIV-PVDIY-VPGCPPTAEALIYGILL 172
G + DI +PGCP ++ +L
Sbjct: 664 GAVGVAEALGRTDIINLPGCPTNPINIVGTLLQ 696
>gi|328953385|ref|YP_004370719.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobacca
acetoxidans DSM 11109]
gi|328453709|gb|AEB09538.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobacca
acetoxidans DSM 11109]
Length = 256
Score = 40.8 bits (94), Expect = 0.083, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 23/107 (21%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
P D+ +V G++T R+ + V+++G+CA GG
Sbjct: 50 PGPYDLSLVEGSITTP--EDAHRIKQVRRRSKLVVTIGACATAGGIQALRNFTDVKDYIA 107
Query: 136 -------YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
Y + + VD +PGCP L+ I L +
Sbjct: 108 AVYARPEYIKTLEQSTPIAEHIKVDYQLPGCPINKNQLLELIQALLQ 154
>gi|284162647|ref|YP_003401270.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus
profundus DSM 5631]
gi|294862475|sp|P84627|VHCG_ARCPA RecName: Full=F420-non-reducing hydrogenase iron-sulfur subunit G
gi|284012644|gb|ADB58597.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Archaeoglobus
profundus DSM 5631]
Length = 321
Score = 40.8 bits (94), Expect = 0.085, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 40/115 (34%), Gaps = 45/115 (39%)
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--------------- 135
+ D+ +++G + NK L +V Q + + +++ G CA GG
Sbjct: 57 QSIDLGLISGMVRNKENEHLVKVMRQ--KCKIIVAFGICAALGGIPGMANMHKNEELFEN 114
Query: 136 -YHYSYSV---------------------------VRGCDRIVPVDIYVPGCPPT 162
Y S S V+ D ++ VD YV GCPP
Sbjct: 115 AYIKSPSTDNPNNVIPQPVSKEGEFELTLPEFLDRVKPIDEVIEVDYYVGGCPPH 169
>gi|126656038|ref|ZP_01727422.1| hydrogenase small subunit [Cyanothece sp. CCY0110]
gi|126622318|gb|EAZ93024.1| hydrogenase small subunit [Cyanothece sp. CCY0110]
Length = 181
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 36/120 (30%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------Y 136
P DV +V G + L + + + + ++S G CA
Sbjct: 49 PDNVDVCLVEGAI--ANKENLELIKEIRAKTKLIVSFGDCAVTANVPAMRNMLGPAETVL 106
Query: 137 HYSY---------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
SY V ++ VD+++PGCPP A+ + I L +
Sbjct: 107 KRSYLELGDVTPQLPQEPGIVPELLDRVSPVHEVINVDLFLPGCPPDADRIRAAIEPLLE 166
>gi|150399745|ref|YP_001323512.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
vannielii SB]
gi|150012448|gb|ABR54900.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanococcus
vannielii SB]
Length = 287
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 38/116 (32%), Gaps = 34/116 (29%)
Query: 92 QSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135
+ DV + G N+ L +++ + + VI+ G+CA GG
Sbjct: 52 EVDVFCIEGGARNEHDEHL--MHEIREKSKVVIAWGTCAVYGGIPGLANLYKTEEINTTP 109
Query: 136 ----YHYSYSV------------VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ V V+ ++ D +PGCPP I+ L
Sbjct: 110 YYTKTTDNPGVIPENGIPKLLDTVKPVTDVIKADYILPGCPPKPALNAAAIVALLN 165
>gi|27382055|ref|NP_773584.1| HupU protein [Bradyrhizobium japonicum USDA 110]
gi|530183|gb|AAA62627.1| hupU [Bradyrhizobium japonicum USDA 110]
gi|27355225|dbj|BAC52209.1| HupU protein [Bradyrhizobium japonicum USDA 110]
Length = 338
Score = 40.8 bits (94), Expect = 0.092, Method: Composition-based stats.
Identities = 37/182 (20%), Positives = 60/182 (32%), Gaps = 56/182 (30%)
Query: 50 ARTGSLMWMTFGLACCAVEMMQASMPRY--DLERFGFAPRASPR---------------- 91
T L C + ++++ + +L +FG P
Sbjct: 6 GTTNVLWLQGASCGGCTMSILESGASGWFDELRQFGINLLWHPSVSEETGEEAVEVLQSV 65
Query: 92 -----QSDVMIVAGTLTN-------------KMASALRRVYDQMPEPRYVISMGSCANGG 133
Q D++++ G++ S R + D P YVI++GSCA G
Sbjct: 66 LDGKVQLDLLLLEGSVARGPNDSGRFNMLAGTNRSVYRWMLDLAPLADYVIAVGSCAAYG 125
Query: 134 GY----YHYSYSV---VRGCDRI------------VPVDIYVPGCPPTAEALIYGILLLQ 174
G + + +V G D +PV I V GC P ++ IL L
Sbjct: 126 GVPAAGSNPTDAVGLQFEGSDSGGALGAGFRSRLGLPV-INVAGCAPHPGWMMETILALT 184
Query: 175 KK 176
K
Sbjct: 185 SK 186
>gi|317050636|ref|YP_004111752.1| hydrogenase (NiFe) small subunit HydA [Desulfurispirillum indicum
S5]
gi|316945720|gb|ADU65196.1| hydrogenase (NiFe) small subunit HydA [Desulfurispirillum indicum
S5]
Length = 314
Score = 40.8 bits (94), Expect = 0.094, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 16/89 (17%)
Query: 96 MIVAGTLTNKMASALRRVYDQ--MPEPRYVISMGSCANGGGYYHYS-----------YSV 142
+ V+ T + + + +P+ I+ G+CA+ GG YS
Sbjct: 118 IPVSMPHTCMVGHRTMDSWMERILPKATACIAAGTCASFGGITKMPGMDTGCMGLLQYSS 177
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGIL 171
+G + I +PGCP E L+Y +L
Sbjct: 178 FKGYTTPL---ITLPGCPMKPEHLLYALL 203
>gi|254425734|ref|ZP_05039451.1| NADH ubiquinone oxidoreductase, 20 Kd subunit superfamily
[Synechococcus sp. PCC 7335]
gi|196188157|gb|EDX83122.1| NADH ubiquinone oxidoreductase, 20 Kd subunit superfamily
[Synechococcus sp. PCC 7335]
Length = 191
Score = 40.8 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 46/121 (38%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
P DV++V G + N+ L ++ +Y++S G CA G
Sbjct: 49 PEGVDVVLVEGAIANQDH--LETIHRVRDRTQYLVSFGDCAVTGNVTAMRNTLGNPIDGP 106
Query: 136 -----------YHYSY-------------------SVVRGCDRIVPVDIYVPGCPPTAEA 165
+ +Y V ++VPVD Y+PGCPP AE
Sbjct: 107 IGNPSGNAEAVLNRAYLETATQPQHPGGDLVPALLDRVLPVHQVVPVDCYLPGCPPDAER 166
Query: 166 L 166
+
Sbjct: 167 I 167
>gi|154243755|ref|YP_001409328.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter
autotrophicus Py2]
gi|154246208|ref|YP_001417166.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter
autotrophicus Py2]
gi|154160293|gb|ABS67509.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter
autotrophicus Py2]
gi|154162877|gb|ABS70092.1| Ni Fe-hydrogenase III large subunit-like protein [Xanthobacter
autotrophicus Py2]
Length = 110
Score = 40.8 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 27/60 (45%)
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
A DL R G PRQ++V++V L M A Y QMP PR V+ +G
Sbjct: 41 ALAAGLDLSRAGLTEADGPRQANVLLVMLPLPAPMLKAATVAYAQMPRPRTVLVLGEGVI 100
>gi|94263615|ref|ZP_01287425.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
proteobacterium MLMS-1]
gi|93456035|gb|EAT06186.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
proteobacterium MLMS-1]
Length = 366
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
Y V+ +V VD ++PGCPP + + L
Sbjct: 148 YDRVQTLADVVAVDFFIPGCPPEPPRIWQAVESLLN 183
>gi|94266349|ref|ZP_01290050.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
proteobacterium MLMS-1]
gi|93453063|gb|EAT03545.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
proteobacterium MLMS-1]
Length = 362
Score = 40.8 bits (94), Expect = 0.096, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
Y V+ +V VD ++PGCPP + + L
Sbjct: 148 YDRVQTLADVVAVDFFIPGCPPEPPRIWQAVESLLN 183
>gi|34534808|dbj|BAC87117.1| unnamed protein product [Homo sapiens]
Length = 294
Score = 40.8 bits (94), Expect = 0.097, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGS 54
V+Q + + S + + + + ++V +D LV WAR S
Sbjct: 29 GVHQSVATDGPSSTQPALPKARAVAPKPSSRGEYVVAKLDDLVNWARRVS 78
>gi|322378996|ref|ZP_08053399.1| Hydrogenase, small subunit [Helicobacter suis HS1]
gi|322380414|ref|ZP_08054618.1| hydrogenase, small subunit [Helicobacter suis HS5]
gi|321147153|gb|EFX41849.1| hydrogenase, small subunit [Helicobacter suis HS5]
gi|321148488|gb|EFX42985.1| Hydrogenase, small subunit [Helicobacter suis HS1]
Length = 389
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRG 145
P+ ++ + G A RR + ++++G+C++ GG + + S +
Sbjct: 146 GIPQGTEYFLTVGAEGRTGAEECRR---AAKYAKAILAIGTCSSFGGVQAAYPNPSNAQP 202
Query: 146 CDRIV--PVDIYVPGCPPTAEALIYGILLLQ 174
+I+ P+ I VPGCPP+ + ++ +L L
Sbjct: 203 LSKIIDKPI-INVPGCPPSEKNIVGCVLYLL 232
>gi|225850246|ref|YP_002730480.1| putative [NiFe] hydrogenase, delta subunit [Persephonella marina
EX-H1]
gi|225645381|gb|ACO03567.1| putative [NiFe] hydrogenase, delta subunit [Persephonella marina
EX-H1]
Length = 249
Score = 40.8 bits (94), Expect = 0.098, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 25/99 (25%)
Query: 94 DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY--------YHYSYSVV- 143
D+ + G++ T + ++++ D YV+++G+C++ GG Y V
Sbjct: 51 DISFIEGSVSTPEQEEKVKKIRDV---SEYVVTIGACSSSGGIQSVRNFSDYKDIVCSVY 107
Query: 144 ------------RGCDRIVPVDIYVPGCPPTAEALIYGI 170
R + VD + GCP EAL+ I
Sbjct: 108 PKPEMIKSLERSRPVSDYIDVDFEIRGCPINKEALLEVI 146
>gi|225848708|ref|YP_002728871.1| [NiFe] hydrogenase, subunit delta [Sulfurihydrogenibium azorense
Az-Fu1]
gi|225644624|gb|ACN99674.1| putative [NiFe] hydrogenase, delta subunit [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 249
Score = 40.8 bits (94), Expect = 0.100, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 29/127 (22%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVM------IVAGTLTNKMASALRRVY 114
C + + S +LE F + + V G+++ + R+
Sbjct: 10 SCDGCQLSFINLSGELAELENFSIDYFLEGQSVNNYEYFDFSFVEGSVS--TTEEIERIK 67
Query: 115 DQMPEPRYVISMGSCANGGGYYHYS-----------YSVVR----------GCDRIVPVD 153
D + ++ +G+CA GG Y+ V ++V VD
Sbjct: 68 DIRERSKVLVGIGACAVSGGVQSIRNFRNIDDIKTVYNTVDITKNVLENALPISQVVKVD 127
Query: 154 IYVPGCP 160
+ GCP
Sbjct: 128 FEIRGCP 134
>gi|197124674|ref|YP_002136625.1| methyl-viologen-reducing hydrogenase subunit delta
[Anaeromyxobacter sp. K]
gi|196174523|gb|ACG75496.1| methyl-viologen-reducing hydrogenase delta subunit
[Anaeromyxobacter sp. K]
Length = 486
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
+VPVD +PGCPP+ + + L
Sbjct: 312 LADVVPVDYTIPGCPPSPAVVQAALDALL 340
>gi|94270483|ref|ZP_01291756.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
proteobacterium MLMS-1]
gi|93450778|gb|EAT01830.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [delta
proteobacterium MLMS-1]
Length = 366
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 140 YSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
Y V+ +V VD ++PGCPP + + L
Sbjct: 148 YDRVQTLADVVAVDFFIPGCPPEPPRIWQAVESLLN 183
>gi|270307564|ref|YP_003329622.1| Ni/Fe hydrogenase, small subunit [Dehalococcoides sp. VS]
gi|270153456|gb|ACZ61294.1| Ni/Fe hydrogenase, small subunit [Dehalococcoides sp. VS]
Length = 354
Score = 40.8 bits (94), Expect = 0.10, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG--CDRIV-------PVDIYVPGC 159
L V + P+ V++ G+C+ GG + + I+ PV + +PGC
Sbjct: 140 MLEHVLNLAPKALAVVAAGTCSAFGGITASAPNPTGAKAVSEILKEHNITTPV-VNLPGC 198
Query: 160 PPTAEALI 167
PP + ++
Sbjct: 199 PPHPDWVV 206
>gi|90425256|ref|YP_533626.1| hydrogenase (NiFe) small subunit (hydA) [Rhodopseudomonas palustris
BisB18]
gi|90107270|gb|ABD89307.1| hydrogenase (NiFe) small subunit (hydA) [Rhodopseudomonas palustris
BisB18]
Length = 374
Score = 40.4 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + VI+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 139 RPFVEKLKEMAEDSMAVIAWGACASWGCVQAAKPNPTQATPIDKVIRNKPI-IKVPGCPP 197
Query: 162 TAE 164
AE
Sbjct: 198 IAE 200
>gi|115523252|ref|YP_780163.1| hydrogenase (NiFe) small subunit HydA [Rhodopseudomonas palustris
BisA53]
gi|115517199|gb|ABJ05183.1| hydrogenase (NiFe) small subunit HydA [Rhodopseudomonas palustris
BisA53]
Length = 371
Score = 40.4 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + VI+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 139 RPFVEKLKEMADDSMAVIAWGACASWGCVQAAKPNPTQAVPIDKVIKNKPI-IKVPGCPP 197
Query: 162 TAE 164
AE
Sbjct: 198 IAE 200
>gi|91975642|ref|YP_568301.1| hydrogenase (NiFe) small subunit (hydA) [Rhodopseudomonas palustris
BisB5]
gi|91682098|gb|ABE38400.1| hydrogenase (NiFe) small subunit (hydA) [Rhodopseudomonas palustris
BisB5]
Length = 377
Score = 40.4 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + VI+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 139 RPFVEKLKEMADDSMAVIAWGACASWGCVQAAKPNPTQAVPIDKVIKNKPI-IKVPGCPP 197
Query: 162 TAE 164
AE
Sbjct: 198 IAE 200
>gi|226225819|ref|YP_002759925.1| NiFe uptake hydrogenase small subunit [Gemmatimonas aurantiaca
T-27]
gi|226089010|dbj|BAH37455.1| NiFe uptake hydrogenase small subunit [Gemmatimonas aurantiaca
T-27]
Length = 323
Score = 40.4 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 40/116 (34%)
Query: 91 RQSDVMIVAGTL-----------TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
RQ D+ + GT+ + V + V+++G CA GG
Sbjct: 64 RQLDIFVFEGTVILGPNKTGRFNMFADRPMMDWVRELASHAGAVVALGDCACWGGI---P 120
Query: 140 YSVVRGCDRI----------------------VPVDIYVPGCPPTAE---ALIYGI 170
+ D + +PV + +PGCP + ++ I
Sbjct: 121 ATEPNPVDNVGLQYLKRKHGGFLGSDFRSKWGLPV-VNIPGCPTHPDWVTQILVAI 175
>gi|292491627|ref|YP_003527066.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nitrosococcus
halophilus Nc4]
gi|291580222|gb|ADE14679.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Nitrosococcus
halophilus Nc4]
Length = 273
Score = 40.4 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 23/91 (25%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135
DV V G+++ ++R+ + R VI++G+CA GGG
Sbjct: 53 DVSFVEGSVSTP--EEIKRIRQVRQQSRQVIAIGACATGGGIQALRNWGQHDAFLKAVYA 110
Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCPPTA 163
Y S + +D + GCPP
Sbjct: 111 SPEYIDSLEHSTPFSDHIRLDAELWGCPPDP 141
>gi|78777635|ref|YP_393950.1| Ni-Fe hydrogenase, small subunit [Sulfurimonas denitrificans DSM
1251]
gi|78498175|gb|ABB44715.1| Ni-Fe hydrogenase, small subunit [Sulfurimonas denitrificans DSM
1251]
Length = 293
Score = 40.4 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 85 APRASPRQSDVMIVAGTLTNKMA----SALRRVYDQMPEPRYVISMGSCANGGGYYHYS- 139
++ + +V+I+ G ++ + + + + ++++G+CA GG + S
Sbjct: 51 EIVSNEIECEVLIIEGAISEEFQRGGVPIFEIIKNYSKRVQKILTVGTCATFGGIFRESD 110
Query: 140 YSVVRGC-----------DRIVPVDIYVPGCPPTAEALIYGILLLQKKI 177
Y G + I + GCP E L+ + ++K +
Sbjct: 111 YKDTAGMHFDQDRALHNFSDFLDKTISISGCPIHPEVLVNTLYAIKKSV 159
>gi|322418756|ref|YP_004197979.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M18]
gi|320125143|gb|ADW12703.1| hydrogenase (NiFe) small subunit HydA [Geobacter sp. M18]
Length = 392
Score = 40.4 bits (93), Expect = 0.11, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 88 ASPRQSDVMIVAGTL---------TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
+ + +++V G++ T SAL + ++++G+CA G
Sbjct: 122 GAAGKPHLLLVNGSVPLNADGAYCTIGGDSALNLLKRAAQNASAILAVGACAEYGCVQAA 181
Query: 139 SYSVVR--GCDRIV---PVDIYVPGCPPTAEAL 166
S ++ G ++ PV + + GCPP AE +
Sbjct: 182 SPNLTGAVGVSEVIRDRPV-VNISGCPPIAETI 213
>gi|73748065|ref|YP_307304.1| Ni/Fe hydrogenase small subunit [Dehalococcoides sp. CBDB1]
gi|147668905|ref|YP_001213723.1| hydrogenase (NiFe) small subunit HydA [Dehalococcoides sp. BAV1]
gi|289432092|ref|YP_003461965.1| hydrogenase (NiFe) small subunit HydA [Dehalococcoides sp. GT]
gi|73659781|emb|CAI82388.1| Ni/Fe hydrogenase small subunit [Dehalococcoides sp. CBDB1]
gi|146269853|gb|ABQ16845.1| hydrogenase (NiFe) small subunit HydA [Dehalococcoides sp. BAV1]
gi|288945812|gb|ADC73509.1| hydrogenase (NiFe) small subunit HydA [Dehalococcoides sp. GT]
Length = 354
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG--CDRIV-------PVDIYVPGCP 160
L V + P+ V++ G+C+ GG + + I+ PV + +PGCP
Sbjct: 141 LEHVLNLAPKALAVVAAGTCSAFGGITAAAPNPTGAKAVSEILKDHNITTPV-VNLPGCP 199
Query: 161 PTAEALI 167
P + ++
Sbjct: 200 PHPDWVV 206
>gi|300432249|gb|ADK12980.1| NiFe hydrogenase small subunit [Thiocapsa roseopersicina]
Length = 179
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 35/111 (31%)
Query: 89 SPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------Y 136
+ D+ ++ G + N + R + + + ++++G+CA GG
Sbjct: 48 TLGDCDLGLIEGGVANAENVEVLREFRRRCKT--LVAVGACAVNGGIPAMRNQFSLAECL 105
Query: 137 HYSY---------------------SVVRGCDRIVPVDIYVPGCPPTAEAL 166
SY + V +V +D ++PGCPP+A+A+
Sbjct: 106 RESYCDGVGVHNPGIPNDPEIPLLLNQVHPIHEVVAIDYFLPGCPPSADAI 156
>gi|302549355|ref|ZP_07301697.1| NADH ubiquinone oxidoreductase [Streptomyces viridochromogenes DSM
40736]
gi|302466973|gb|EFL30066.1| NADH ubiquinone oxidoreductase [Streptomyces viridochromogenes DSM
40736]
Length = 363
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 114 YDQMPEPRY-VISMGSCANGGGYYHYSYSV--VRGCDRI----------VPVDIYVPGCP 160
DQ+ + V++ G+CA GG + S + G +PV + VPGCP
Sbjct: 136 IDQLAPKAWAVVAAGTCATFGGIHAMSGNPTGCMGLADYLGWDYTSQGGLPV-VNVPGCP 194
Query: 161 PTAEALIYGIL 171
E + ++
Sbjct: 195 IQPENFMETLV 205
>gi|227489483|ref|ZP_03919799.1| hydrogenase (acceptor) [Corynebacterium glucuronolyticum ATCC
51867]
gi|227541077|ref|ZP_03971126.1| hydrogenase [Corynebacterium glucuronolyticum ATCC 51866]
gi|227090661|gb|EEI25973.1| hydrogenase (acceptor) [Corynebacterium glucuronolyticum ATCC
51867]
gi|227183337|gb|EEI64309.1| hydrogenase [Corynebacterium glucuronolyticum ATCC 51866]
Length = 405
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 15/95 (15%)
Query: 86 PRASPRQSDVMIVAGTLTN-----KMASALRR----VYDQMPEPRYVISMGSCANGGGYY 136
+ Q +++V G++ A R + D V+++G+CA G
Sbjct: 120 MTDTFEQPHILVVNGSVPRKEDGAYCTIAGRSVESILKDAAKNAEVVLAVGACAVYGSVQ 179
Query: 137 HYSYSVVR--GCDRIV---PVDIYVPGCPPTAEAL 166
+ G D I+ PV I V GCPP E +
Sbjct: 180 AAKPNPTGAVGVDEIIKDKPV-INVSGCPPIGEVI 213
>gi|220919394|ref|YP_002494698.1| methyl-viologen-reducing hydrogenase delta subunit
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219957248|gb|ACL67632.1| methyl-viologen-reducing hydrogenase delta subunit
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 489
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
+VPVD VPGCPP+ + + L
Sbjct: 312 LADVVPVDYTVPGCPPSPAVVQAALDALL 340
>gi|332296153|ref|YP_004438076.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
narugense DSM 14796]
gi|332179256|gb|AEE14945.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermodesulfobium
narugense DSM 14796]
Length = 322
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 46/129 (35%)
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--------------- 135
+ DV +++G + + +V + V++ G+CA+ GG
Sbjct: 60 KSVDVGLISGMIRLSEHEHMSKVMRA--KCNVVVAYGACASMGGIPGMANMHTKEDIFQT 117
Query: 136 -YHYSYSV----------------------------VRGCDRIVPVDIYVPGCPPTAEAL 166
Y ++S VR ++ VD ++ GCPP +
Sbjct: 118 AYFDTFSTDNPDGVTPQPQYLMDGKYDLTLPEFYPYVRPIQSVIDVDYFIGGCPPHHSVV 177
Query: 167 IYGILLLQK 175
+ ++ + K
Sbjct: 178 LNALVAILK 186
>gi|170289947|ref|YP_001736763.1| coenzyme F420-reducing hydrogenase, gamma subunit [Candidatus
Korarchaeum cryptofilum OPF8]
gi|170174027|gb|ACB07080.1| Coenzyme F420-reducing hydrogenase, gamma subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 258
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 26/91 (28%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS------------ 139
D+ V G++ T + ++R+ + ++++G CA GG +
Sbjct: 52 VDIAFVEGSVSTERDLEYIKRI---RGNSKILVALGDCAVWGGIQASTSGQDPKELMRSV 108
Query: 140 YSV----------VRGCDRIVPVDIYVPGCP 160
Y +G +VPVD + GCP
Sbjct: 109 YKTEKNLYGFLGEHKGISEVVPVDYEIQGCP 139
>gi|323700646|ref|ZP_08112558.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio sp. ND132]
gi|323460578|gb|EGB16443.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio desulfuricans
ND132]
Length = 328
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 124 ISMGSCANGGGYYH--YSYSVVRGCDRIVPVD--IYVPGCPPTAEALIYGILLLQKK 176
I+ G+CA+ GG + + +G + P I VPGCPP +L+ I+ K
Sbjct: 164 ITYGTCASYGGVQKAAPNPTAAKGIGELFPGKAIINVPGCPPNPFSLVGTIVHFLTK 220
>gi|1943535|pdb|1FRV|A Chain A, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
gi|1943537|pdb|1FRV|C Chain C, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
Length = 264
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV----PVDIYVPGCPPTAEALIY 168
+ P+ + VI++G+CA GG + G + + I + GCPP +
Sbjct: 98 EVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVG 157
Query: 169 GILLLQKK 176
++ L K
Sbjct: 158 TVVHLLTK 165
>gi|297616575|ref|YP_003701734.1| hydrogenase (NiFe) small subunit HydA [Syntrophothermus lipocalidus
DSM 12680]
gi|297144412|gb|ADI01169.1| hydrogenase (NiFe) small subunit HydA [Syntrophothermus lipocalidus
DSM 12680]
Length = 352
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 90 PRQSDVMIVA-GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGC 146
P +D + G + + ++ + D + + ++S G+CA GG + + +
Sbjct: 114 PTGADGLYCTVGEENGEPITFVKLLNDIGSKAKAILSFGTCAAYGGIPATPPNPTDCKPV 173
Query: 147 DRIV---PVDIYVPGCPPTAE 164
++ P+ + VPGCPP +
Sbjct: 174 SEVIKNVPI-VNVPGCPPHPD 193
>gi|3318794|pdb|2FRV|S Chain S, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
gi|3318796|pdb|2FRV|A Chain A, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
gi|3318798|pdb|2FRV|C Chain C, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
gi|3318800|pdb|2FRV|E Chain E, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
gi|3318802|pdb|2FRV|G Chain G, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
gi|3318804|pdb|2FRV|I Chain I, Crystal Structure Of The Oxidized Form Of Ni-Fe
Hydrogenase
gi|66361137|pdb|1YQ9|A Chain A, Structure Of The Unready Oxidized Form Of [nife]
Hydrogenase
gi|66361139|pdb|1YQ9|B Chain B, Structure Of The Unready Oxidized Form Of [nife]
Hydrogenase
Length = 264
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV----PVDIYVPGCPPTAEALIY 168
+ P+ + VI++G+CA GG + G + + I + GCPP +
Sbjct: 98 EVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVG 157
Query: 169 GILLLQKK 176
++ L K
Sbjct: 158 TVVHLLTK 165
>gi|1617572|gb|AAB57891.1| NAD-reducing hydrogenase delta subunit [Rhodococcus opacus]
Length = 209
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 36/195 (18%), Positives = 60/195 (30%), Gaps = 58/195 (29%)
Query: 30 SSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLER-------- 81
+EI T +D ++ R + GL C ++ D++
Sbjct: 6 KNEIASHELPTTPLDPVLAAGRESKIKVAMIGLCGC----WGCTLSFLDMDERLLVLLDK 61
Query: 82 -------FGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
R + R + I G + L + +IS+G+CA GG
Sbjct: 62 VTLHRSSLSDIKRITERCAIGFIEGGVANEENIETLEHYRENC---DVLISVGACAVWGG 118
Query: 135 Y----------------YHYSYSVVRGCDRIVP--------------------VDIYVPG 158
Y S + V G +VP +D ++PG
Sbjct: 119 VPAMRNVFELKDCLSEVYIDSATSVPGAKPVVPFHPDIPRITDKVYPCHEVVKMDYFIPG 178
Query: 159 CPPTAEALIYGILLL 173
CPP A+A+ + L
Sbjct: 179 CPPDADAIFKVLDDL 193
>gi|51244012|ref|YP_063896.1| periplasmic [NiFeSe] hydrogenase, small subunit [precursor]
[Desulfotalea psychrophila LSv54]
gi|50875049|emb|CAG34889.1| related to periplasmic [NiFeSe] hydrogenase, small subunit
[Precursor] [Desulfotalea psychrophila LSv54]
Length = 300
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 23/160 (14%), Positives = 47/160 (29%), Gaps = 36/160 (22%)
Query: 50 ARTGSLMWMTFGLACCAVEM--------------------MQASMPRYDLERFGFAPRAS 89
R+ L + C++ M ++
Sbjct: 40 GRSKVLWLQAQSCSGCSISMLDSESPGPAELLTQYISLLFHHTLSAATGESCMHIVRKSV 99
Query: 90 PRQSDVMIVAGTLTNKM--------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
+ +++V G++ M + YVI++G+CA GG +
Sbjct: 100 QQGGYILVVEGSIPAGMPEACMMGGIPVGELIKQAAERADYVIALGTCAAFGGIPAAEGN 159
Query: 142 VVRGC--------DRIVPVDIYVPGCPPTAEALIYGILLL 173
++I I +PGCP + L+ ++ L
Sbjct: 160 PTGAVPLGPFLQANKIKTPIINIPGCPSHPDWLVGTLVHL 199
>gi|57235075|ref|YP_180862.1| [Ni/Fe] hydrogenase, group 1, small subunit, putative
[Dehalococcoides ethenogenes 195]
gi|57225523|gb|AAW40580.1| [Ni/Fe] hydrogenase, group 1, small subunit, putative
[Dehalococcoides ethenogenes 195]
Length = 354
Score = 40.0 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG--CDRIV-------PVDIYVPGCP 160
L V + P+ +++ G+CA GG + + + I+ PV + +PGCP
Sbjct: 141 LEHVLNLAPKALAIVAAGTCAAFGGITAAAPNPTGAKALEEILKDHNITTPV-VNLPGCP 199
Query: 161 PTAEALI 167
P + ++
Sbjct: 200 PHPDWVV 206
>gi|78044264|ref|YP_360378.1| [Ni/Fe] hydrogenase small subunit [Carboxydothermus
hydrogenoformans Z-2901]
gi|77996379|gb|ABB15278.1| [Ni/Fe] hydrogenase, small subunit [Carboxydothermus
hydrogenoformans Z-2901]
Length = 354
Score = 40.0 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVPV--DIYVPGCP 160
+ ++ + + + + VI++G+CA GG + + ++ + +PGCP
Sbjct: 133 YFSEVVKELGE---KAKAVIAIGTCAAFGGIPAADPNPTGCVPVTEVIDPKKVLNIPGCP 189
Query: 161 PTAE 164
P +
Sbjct: 190 PHPD 193
>gi|242279520|ref|YP_002991649.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio salexigens DSM
2638]
gi|242122414|gb|ACS80110.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio salexigens DSM
2638]
Length = 315
Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 14/80 (17%)
Query: 113 VYDQMPEPRYVISMGSCANGGG-----------YYHYSYSVVRGCDRIVPVDIYVPGCPP 161
+ V+++G+CA GG ++ G PV + +PGCPP
Sbjct: 136 TLEMAKNAAVVVNVGTCAAYGGIPAAEGNLTGSMSVTNFLAENGVKT--PV-VNIPGCPP 192
Query: 162 TAEALIYGILLLQKKIRRVG 181
+ ++ +++ I G
Sbjct: 193 HPDWMVGTLVVAINAIEAKG 212
>gi|188527520|ref|YP_001910207.1| Hydrogenase, small subunit [Helicobacter pylori Shi470]
gi|188143760|gb|ACD48177.1| Hydrogenase, small subunit [Helicobacter pylori Shi470]
Length = 384
Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRG 145
P+ ++ + G + + + ++G+C++ GG + + S +
Sbjct: 147 GIPQGTEYFLTQGP---NAETGAKECRKAAQHAVAIFAIGTCSSFGGVQAAYPNPSNAQP 203
Query: 146 CDRIV--PVDIYVPGCPPT 162
+I+ PV I VPGCPP+
Sbjct: 204 LHKIIDKPV-INVPGCPPS 221
>gi|57642005|ref|YP_184483.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus
kodakarensis KOD1]
gi|21327887|dbj|BAC00530.1| sulfhydrogenase delta subunit [Thermococcus kodakaraensis]
gi|57160329|dbj|BAD86259.1| cytosolic NiFe-hydrogenase, delta subunit [Thermococcus
kodakarensis KOD1]
Length = 264
Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 25/104 (24%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYS 139
D+ + G++ T + A ++++ + V+++GSCA GG +
Sbjct: 54 VDIAFIEGSVSTEEEAELVKKIRENAK---IVVAVGSCAVQGGVQSWEKDKPLEELWKTV 110
Query: 140 YS---------VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
Y + + VD + GCPP +Y + L
Sbjct: 111 YGDAKVKFQPKMAEPISNYIKVDYNIYGCPPEKRDFLYTLGTLL 154
>gi|226306890|ref|YP_002766850.1| NiFe hydrogenase delta subunit [Rhodococcus erythropolis PR4]
gi|226186007|dbj|BAH34111.1| putative NiFe hydrogenase delta subunit [Rhodococcus erythropolis
PR4]
Length = 256
Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 29/133 (21%)
Query: 55 LMWMTFGLAC------CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
+ C C E++ + + + D+ +V G++T A+
Sbjct: 9 VWKFASCDGCQLTLLDCEDELLTLADAVHISHFLEMSSEVESGPYDLSLVEGSIT--TAA 66
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGY---------------------YHYSYSVVRGCD 147
+ R++ R+++++G+CA GG Y + +
Sbjct: 67 DIERIHAIRENSRHLVTIGACATSGGIQALRNFADIAEFMSVVYASGEYIDTLATSTPIA 126
Query: 148 RIVPVDIYVPGCP 160
VPVD + GCP
Sbjct: 127 DHVPVDFELRGCP 139
>gi|153007144|ref|YP_001381469.1| methyl-viologen-reducing hydrogenase delta subunit
[Anaeromyxobacter sp. Fw109-5]
gi|152030717|gb|ABS28485.1| methyl-viologen-reducing hydrogenase delta subunit
[Anaeromyxobacter sp. Fw109-5]
Length = 488
Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 145 GCDRIVPVDIYVPGCPPTA---EALIYGIL 171
+VPVD VPGCPP+ +A + +L
Sbjct: 313 PLADVVPVDYTVPGCPPSPALVQAALDALL 342
>gi|207856961|ref|YP_002243612.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|206708764|emb|CAR33092.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
Length = 367
Score = 40.0 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPT 162
L ++ + + +I+ G+CA+ G + + +++ P+ I VPGCPP
Sbjct: 139 PFLEKLKRVSADAKAIIAWGACASWGCVQAARPNPTKATPVHKLITDKPI-IKVPGCPPI 197
Query: 163 AEALIYGILL 172
E ++ ++
Sbjct: 198 PE-VMSAVIT 206
>gi|130113|sp|P12943|PHNS_DESGI RecName: Full=Periplasmic [NiFe] hydrogenase small subunit;
AltName: Full=NiFe hydrogenlyase small chain; Flags:
Precursor
Length = 288
Score = 40.0 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV----PVDIYVPGCPPTAEALIY 168
+ P+ + VI++G+CA GG + G + + I + GCPP +
Sbjct: 122 EVAPKAKAVIAIGTCATYGGVQAAKPNPTGTVGVNEALGKLGVKAINIAGCPPNPMNFVG 181
Query: 169 GILLLQKK 176
++ L K
Sbjct: 182 TVVHLLTK 189
>gi|39995888|ref|NP_951839.1| nickel-dependent hydrogenase small subunit [Geobacter
sulfurreducens PCA]
gi|39982652|gb|AAR34112.1| nickel-dependent hydrogenase, small subunit [Geobacter
sulfurreducens PCA]
gi|298504902|gb|ADI83625.1| periplasmically oriented, membrane-bound [NiFe]-hydrogenase small
subunit [Geobacter sulfurreducens KN400]
Length = 367
Score = 40.0 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 123 VISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTAEALIYGIL 171
+I++G+CA+ GG + G ++ P+ + +PGCPP + +L
Sbjct: 149 IITIGTCASYGGIQSAPPNPTGAVGVRDLIKNKPI-VNIPGCPPNPYNFLSTVL 201
>gi|205356949|ref|ZP_02343766.2| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205324934|gb|EDZ12773.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
Length = 367
Score = 40.0 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPT 162
L ++ + + +I+ GSCA+ G + + +++ P+ I VPGCPP
Sbjct: 139 PFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVHKLITDKPI-IKVPGCPPI 197
Query: 163 AEALIYGILL 172
E ++ ++
Sbjct: 198 PE-VMSAVIT 206
>gi|205352760|ref|YP_002226561.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205272541|emb|CAR37442.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326627829|gb|EGE34172.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 367
Score = 40.0 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPT 162
L ++ + + +I+ GSCA+ G + + +++ P+ I VPGCPP
Sbjct: 139 PFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVHKLITDKPI-IKVPGCPPI 197
Query: 163 AEALIYGILL 172
E ++ ++
Sbjct: 198 PE-VMSAVIT 206
>gi|16764884|ref|NP_460499.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|194443653|ref|YP_002040788.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194451874|ref|YP_002045577.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194471588|ref|ZP_03077572.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194737982|ref|YP_002114556.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195873273|ref|ZP_02696967.2| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197248993|ref|YP_002146504.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197300754|ref|ZP_02660686.2| uptake hydrogenase small subunit (Hydrogenlyase) [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|198245788|ref|YP_002215600.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200390416|ref|ZP_03217027.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204927759|ref|ZP_03218960.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205357886|ref|ZP_02573978.2| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205358284|ref|ZP_02654985.2| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205358981|ref|ZP_02666000.2| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205359688|ref|ZP_02831303.2| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205360257|ref|ZP_02682263.2| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224583956|ref|YP_002637754.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|16420060|gb|AAL20458.1| putative hydrogenase-1 small subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|194402316|gb|ACF62538.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194410178|gb|ACF70397.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194457952|gb|EDX46791.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194713484|gb|ACF92705.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195634582|gb|EDX52934.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197212696|gb|ACH50093.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197291144|gb|EDY30497.1| uptake hydrogenase small subunit (Hydrogenlyase) [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197940304|gb|ACH77637.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199602861|gb|EDZ01407.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204323101|gb|EDZ08297.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205328967|gb|EDZ15731.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205335333|gb|EDZ22097.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205339335|gb|EDZ26099.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205343780|gb|EDZ30544.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205350951|gb|EDZ37582.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224468483|gb|ACN46313.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261246737|emb|CBG24549.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993444|gb|ACY88329.1| putative hydrogenase-1 small subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301158067|emb|CBW17563.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912523|dbj|BAJ36497.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320085976|emb|CBY95750.1| hydrogenase small chain [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
gi|322616158|gb|EFY13074.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620901|gb|EFY17760.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322623008|gb|EFY19850.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322628298|gb|EFY25086.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322634703|gb|EFY31434.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322638730|gb|EFY35425.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641105|gb|EFY37749.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646531|gb|EFY43039.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649104|gb|EFY45545.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654519|gb|EFY50841.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660762|gb|EFY56995.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665136|gb|EFY61324.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322667880|gb|EFY64040.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671708|gb|EFY67829.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322680091|gb|EFY76130.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322685479|gb|EFY81475.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323129807|gb|ADX17237.1| putative hydrogenase-1 small subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323193689|gb|EFZ78893.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199996|gb|EFZ85084.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204727|gb|EFZ89724.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323205707|gb|EFZ90670.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323214118|gb|EFZ98879.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323216788|gb|EGA01512.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323225183|gb|EGA09429.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231896|gb|EGA16003.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323234423|gb|EGA18510.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323237874|gb|EGA21933.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243525|gb|EGA27544.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323249522|gb|EGA33436.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323254233|gb|EGA38051.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255453|gb|EGA39218.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323261279|gb|EGA44867.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323266644|gb|EGA50131.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271608|gb|EGA55028.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326623345|gb|EGE29690.1| putative hydrogenase-1 small subunit [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|332988423|gb|AEF07406.1| putative hydrogenase-1 small subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 367
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPT 162
L ++ + + +I+ GSCA+ G + + +++ P+ I VPGCPP
Sbjct: 139 PFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVHKLITDKPI-IKVPGCPPI 197
Query: 163 AEALIYGILL 172
E ++ ++
Sbjct: 198 PE-VMSAVIT 206
>gi|328463538|gb|EGF35166.1| succinyl-diaminopimelate desuccinylase [Lactobacillus rhamnosus
MTCC 5462]
Length = 220
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
Y+++ G + +S + V + G + +DQ P+ +
Sbjct: 12 YAHGGTVNYEIDSEGVSVHSSRPEKGVNAIEGVVAFATREP--HAFDQAPDDPDL----- 64
Query: 129 CANGGGYYHYSYSVVRGCDRI--VPVDIYVPG-CPPTAEALIYGILLLQKKI 177
G + +S +V++G D++ +P Y+ G PT A I ++ L +K+
Sbjct: 65 -----GPFRHSITVIKGGDQVNTIPAHAYLRGNLRPTPAANIELVVGLLEKL 111
>gi|289549187|ref|YP_003474175.1| hydrogenase (NiFe) small subunit HydA [Thermocrinis albus DSM
14484]
gi|289182804|gb|ADC90048.1| hydrogenase (NiFe) small subunit HydA [Thermocrinis albus DSM
14484]
Length = 348
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 55/144 (38%), Gaps = 23/144 (15%)
Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDL--ERFGFAPRASPRQSDVMIVAGTLT--- 103
+ R+ S+M L ++E + M + E+ R ++IV G LT
Sbjct: 66 FIRSTSVMPSDVLLDFISLEYHETLMVPSGIYAEQAKEDAIKKYRGRYILIVEGALTPAE 125
Query: 104 ---------NKMASALRRVYDQMPEPRYVISMGSCANGGGY---YHYSYSVVRGCDRIV- 150
LR D +++++GSCA GG Y V +V
Sbjct: 126 DGVYCTVGGKANHHLLREAIDGAK---WIVAVGSCACWGGIPAAYPNPTGAV-PISDLVE 181
Query: 151 -PVDIYVPGCPPTAEALIYGILLL 173
+++PGCPP + L+ ++ L
Sbjct: 182 GKTVVHLPGCPPIGDVLVATLVHL 205
>gi|56413500|ref|YP_150575.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197362425|ref|YP_002142062.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56127757|gb|AAV77263.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197093902|emb|CAR59391.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 367
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPT 162
L ++ + + +I+ GSCA+ G + + +++ P+ I VPGCPP
Sbjct: 139 PFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVHKLITDNPI-IKVPGCPPI 197
Query: 163 AEALIYGILL 172
E ++ ++
Sbjct: 198 PE-VMSAVIT 206
>gi|182701733|ref|ZP_02615078.2| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum NCTC
2916]
gi|226949082|ref|YP_002804173.1| [Ni/Fe] hydrogenase small subunit [Clostridium botulinum A2 str.
Kyoto]
gi|182668678|gb|EDT80656.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum NCTC
2916]
gi|226841277|gb|ACO83943.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum A2 str.
Kyoto]
Length = 290
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDI-YVPGCPPTAEA 165
AL + + +YV+++G+C++ GG + S + D ++ ++ +PGCP +
Sbjct: 125 ALEAIKMAGEKAKYVVTVGTCSSYGGISAAKPNPSGSKSVDAVINKEVIKLPGCPCHPDW 184
Query: 166 LIYGILLL 173
++ + L
Sbjct: 185 VVGTLAHL 192
>gi|170076829|ref|YP_001733467.1| hydrogenase small subunit Y [Synechococcus sp. PCC 7002]
gi|22652023|gb|AAN03567.1|AF381045_4 hydrogenase small subunit Y [Synechococcus sp. PCC 7002]
gi|169884498|gb|ACA98211.1| hydrogenase small subunit Y [Synechococcus sp. PCC 7002]
Length = 188
Score = 40.0 bits (92), Expect = 0.17, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 37/128 (28%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCA------------ 130
G + P+ DV ++ G + N+ L + + +I+ G CA
Sbjct: 48 GSDVKDYPKNVDVCLIEGAVANQ--ENLELLEKVRQNTKLLIAFGDCAVTTNVTGIRNQK 105
Query: 131 -----------------------NGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALI 167
GG V +V +D+++PGCPP A+ +
Sbjct: 106 GDAQTILERGYKELTEEHRLPQQITGGILPPLLPRVLPIHEVVDIDLFLPGCPPDADRIK 165
Query: 168 YGILLLQK 175
I L +
Sbjct: 166 AAIAPLLE 173
>gi|197264164|ref|ZP_03164238.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197242419|gb|EDY25039.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
Length = 367
Score = 39.6 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPT 162
L ++ + + +I+ GSCA+ G + + +++ P+ I VPGCPP
Sbjct: 139 PFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVHKLITDKPI-IKVPGCPPI 197
Query: 163 AEALIYGILL 172
E ++ ++
Sbjct: 198 PE-VMSAVIT 206
>gi|268318131|ref|YP_003291850.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodothermus marinus
DSM 4252]
gi|262335665|gb|ACY49462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Rhodothermus marinus
DSM 4252]
Length = 260
Score = 39.6 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 61/161 (37%), Gaps = 37/161 (22%)
Query: 49 WARTGS---LMWMTFGLAC------CAVEMMQASMPRYDLERFGFAPRASPRQS-DVMIV 98
AR + C C E++ + ++ F A RA+ R D+ +V
Sbjct: 1 MARRKPKLAVWKFASCDGCQLSLLDCEDELLAVAGAI-EIAYFLEASRATVRGPYDLSLV 59
Query: 99 AGTLTN-KMASALRRVYDQMPEPRYVISMGSCANGGGY---------------------Y 136
G++T A +R++ Q R+++++G+CA GG Y
Sbjct: 60 EGSITTPHDAERIRQIRQQ---SRFLVTIGACATAGGIQALRNFQDVAEFTRIVYARPEY 116
Query: 137 HYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILL-LQKK 176
+ + VPVD + GCP + L+ I LQ +
Sbjct: 117 IETLATSTPIAEHVPVDFELRGCPINKQQLLEVITAFLQGR 157
>gi|256829746|ref|YP_003158474.1| hydrogenase (NiFe) small subunit HydA [Desulfomicrobium baculatum
DSM 4028]
gi|256578922|gb|ACU90058.1| hydrogenase (NiFe) small subunit HydA [Desulfomicrobium baculatum
DSM 4028]
Length = 315
Score = 39.6 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 17/71 (23%)
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG-----------CDRIVPVD 153
M +R + P+ +++G+CA GG + +V ++++
Sbjct: 137 TMMELIRDL---APKSLATVAIGTCAAYGGIPAAAGNVTGSKSVRDFFAEEKIEKLL--- 190
Query: 154 IYVPGCPPTAE 164
+ VPGCPP +
Sbjct: 191 VNVPGCPPHPD 201
>gi|284038746|ref|YP_003388676.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Spirosoma linguale
DSM 74]
gi|283818039|gb|ADB39877.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Spirosoma linguale
DSM 74]
Length = 326
Score = 39.6 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 33/94 (35%)
Query: 99 AGTLT----NKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------- 135
GT+ M +R + + YV+++G CA GG
Sbjct: 82 TGTMNYFADRPMQDWVRDLSKVV---GYVVAIGDCATWGGIPAVAPNPSESTGMQFLKKA 138
Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
+ S V +G +PV I +PGCP + +
Sbjct: 139 KGGFLGSDYVSKGG---LPV-INIPGCPAHPDWI 168
>gi|148379801|ref|YP_001254342.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum A str.
ATCC 3502]
gi|153930889|ref|YP_001384098.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum A str.
ATCC 19397]
gi|153936086|ref|YP_001387638.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum A str.
Hall]
gi|148289285|emb|CAL83381.1| hydrogenase small subunit [Clostridium botulinum A str. ATCC 3502]
gi|152926933|gb|ABS32433.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum A str.
ATCC 19397]
gi|152932000|gb|ABS37499.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum A str.
Hall]
gi|322806079|emb|CBZ03646.1| [ni/Fe] hydrogenase, group 1, small subunit [Clostridium botulinum
H04402 065]
Length = 290
Score = 39.6 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDI-YVPGCPPTAEA 165
AL + + +YV+++G+C++ GG + S + D ++ ++ +PGCP +
Sbjct: 125 ALEAIKMAGEKAKYVVTVGTCSSYGGISAAKPNPSGSKSVDAVINKEVIKLPGCPCHPDW 184
Query: 166 LIYGILLL 173
++ + L
Sbjct: 185 VVGTLAHL 192
>gi|315453687|ref|YP_004073957.1| Ni/Fe-hydrogenase small chain [Helicobacter felis ATCC 49179]
gi|315132739|emb|CBY83367.1| Ni/Fe-hydrogenase small chain [Helicobacter felis ATCC 49179]
Length = 392
Score = 39.6 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 39/160 (24%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCA-----VEMMQASMPRYD---LERFGFAPRASP 90
L ++ R + C+ E +D LE AS
Sbjct: 65 LTAKAVEMAN--RLPVIWLHMAECTGCSESLLRSEDPSIDSIIFDYINLEYHETIMVASG 122
Query: 91 RQSDV--------------MIVAGTLTNKMASAL----------RRVYDQMPEPRYVISM 126
Q+D+ ++V G + L + + + ++
Sbjct: 123 HQADLSLEQAIEKHKGNYILMVEGGIPQGTEYFLTMGALARTGAQECIHAAKHAKAIFAI 182
Query: 127 GSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
G+C++ GG + + S + +I+ P+ I VPGCPP+
Sbjct: 183 GTCSSFGGVQAAYPNPSNAQALSKIISQPI-INVPGCPPS 221
>gi|199597567|ref|ZP_03210996.1| Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase
related deacylase [Lactobacillus rhamnosus HN001]
gi|258508189|ref|YP_003170940.1| succinyl diaminopimelate desuccinylase [Lactobacillus rhamnosus GG]
gi|199591590|gb|EDY99667.1| Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase
related deacylase [Lactobacillus rhamnosus HN001]
gi|257148116|emb|CAR87089.1| Succinyl diaminopimelate desuccinylase [Lactobacillus rhamnosus GG]
gi|259649505|dbj|BAI41667.1| putative peptidase [Lactobacillus rhamnosus GG]
Length = 374
Score = 39.6 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
Y+++ G + +S + V + G + +DQ P+ +
Sbjct: 166 YAHGGTVNYEIDSEGVSVHSSRPEKGVNAIEGLVAFSTREP--HAFDQAPDDPDL----- 218
Query: 129 CANGGGYYHYSYSVVRGCDRI--VPVDIYVPG-CPPTAEALIYGILLLQKKI 177
G + +S +V++G D++ +P Y+ G PT A I ++ L +K+
Sbjct: 219 -----GPFRHSITVIKGGDQVNTIPAHAYLRGNLRPTPAANIELVVGLLEKL 265
>gi|296131883|ref|YP_003639130.1| hydrogenase (NiFe) small subunit HydA [Thermincola sp. JR]
gi|296030461|gb|ADG81229.1| hydrogenase (NiFe) small subunit HydA [Thermincola potens JR]
Length = 413
Score = 39.6 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 13/76 (17%)
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPTAEA 165
L + +Y++S+G+CA+ GG Y + S + ++ PV + VPGCP +
Sbjct: 133 LEAIKLAAGNAKYIMSLGTCASFGGPYAAKPNPSGSKPVMDVIEEPV-VNVPGCPVNPDW 191
Query: 166 --------LIYGILLL 173
++YG+ L
Sbjct: 192 CVGTLIHLILYGMPDL 207
>gi|288931223|ref|YP_003435283.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ferroglobus placidus
DSM 10642]
gi|288893471|gb|ADC65008.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Ferroglobus placidus
DSM 10642]
Length = 299
Score = 39.6 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 25/150 (16%), Positives = 47/150 (31%), Gaps = 50/150 (33%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRAS-----------PRQSDVMIVAGTLTNKMASA 109
G + C + ERF + D+ + G++
Sbjct: 13 GCSGCILSFFDLEEFFLSSERFSVVWAPMFTNSKLEDLEKIERIDLTFIEGSIRLSEHEE 72
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYS--YS-------------------------- 141
+ ++ + E V+++G+CA GG S YS
Sbjct: 73 IVKILREKSEK--VVALGTCAVFGGVPGLSNFYSDEEILSDVFDSDENAPKPRTLLDGKY 130
Query: 142 ---------VVRGCDRIVPVDIYVPGCPPT 162
++ + ++ VD +VPGCPP+
Sbjct: 131 ELTLPEFKDEMKRVEEVIEVDHFVPGCPPS 160
>gi|83630689|gb|ABC26854.1| HupS [Bradyrhizobium sp. UPM1167]
Length = 366
Score = 39.6 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ R+ VI+ G+CA+ G + D+++ P+ + VPGCPP
Sbjct: 139 KPFVERLRWMAEASMAVIAWGTCASWGCVQAARPNPTGTVPIDKVISNKPI-VKVPGCPP 197
Query: 162 TAEA 165
AEA
Sbjct: 198 IAEA 201
>gi|148239655|ref|YP_001225042.1| sulfite reductase subunit beta [Synechococcus sp. WH 7803]
gi|147848194|emb|CAK23745.1| Sulfite reductase (Ferredoxin) [Synechococcus sp. WH 7803]
Length = 588
Score = 39.6 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 41 TSVDQLVTWARTGS-LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA 99
+ + W R + ++ L C +E + R ++R+ R +P Q ++
Sbjct: 357 AKLSDYLGWHRQQPGVWFVGIPLLCGRLEGSFKAGLRDIVDRYQLELRLTPNQDVLLCNI 416
Query: 100 GTLTNK-MASALRRVYDQMPEPRYVISMGSCAN 131
G+ + AL + QMPE ++ + A
Sbjct: 417 GSAQRNSVRDALSDLGMQMPEAPPPLARHAIAC 449
>gi|6730011|pdb|1FRF|S Chain S, Crystal Structure Of The Ni-Fe Hydrogenase From
Desulfovibrio Fructosovorans
Length = 264
Score = 39.6 bits (91), Expect = 0.20, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYH--YSYSVVRGCDRIVPV-DIYVPGCPPTA 163
+ + + +I +G+C+ GG + S +G + V I +PGCPP
Sbjct: 92 HPMIETCKKAAAKAKGIICIGTCSPYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNP 151
Query: 164 EALIYGILLLQKK 176
+ ++ + K
Sbjct: 152 INFVGAVVHVLTK 164
>gi|229551989|ref|ZP_04440714.1| possible succinyl-diaminopimelate desuccinylase [Lactobacillus
rhamnosus LMS2-1]
gi|258539404|ref|YP_003173903.1| succinyl diaminopimelate desuccinylase [Lactobacillus rhamnosus Lc
705]
gi|229314638|gb|EEN80611.1| possible succinyl-diaminopimelate desuccinylase [Lactobacillus
rhamnosus LMS2-1]
gi|257151080|emb|CAR90052.1| Succinyl diaminopimelate desuccinylase [Lactobacillus rhamnosus Lc
705]
Length = 374
Score = 39.6 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
Y+++ G + +S + V + G + +DQ P+ +
Sbjct: 166 YAHGGTVNYEIDSEGVSVHSSRPEKGVNAIEGLVAFATREP--HAFDQAPDDPDL----- 218
Query: 129 CANGGGYYHYSYSVVRGCDRI--VPVDIYVPG-CPPTAEALIYGILLLQKKI 177
G + +S +V++G D++ +P Y+ G PT A I ++ L +K+
Sbjct: 219 -----GPFRHSITVIKGGDQVNTIPAHAYLRGNLRPTPAANIELVVGLLEKL 265
>gi|186474338|ref|YP_001863309.1| hydrogenase (NiFe) small subunit HydA [Burkholderia phymatum
STM815]
gi|184198297|gb|ACC76259.1| hydrogenase (NiFe) small subunit HydA [Burkholderia phymatum
STM815]
Length = 386
Score = 39.6 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPT 162
+ ++ + + VI+ G+CA+ G + R ++ P+ I VPGCPP
Sbjct: 150 PFIEKLKRVSADAKAVIAWGACASWGCVQAAKPNPTRATPIAGVILDKPI-IKVPGCPPI 208
Query: 163 AEALIYGILL 172
E ++ I+
Sbjct: 209 PE-VMAAIIT 217
>gi|83592497|ref|YP_426249.1| Ni-Fe hydrogenase, small subunit [Rhodospirillum rubrum ATCC 11170]
gi|83575411|gb|ABC21962.1| Ni-Fe hydrogenase, small subunit [Rhodospirillum rubrum ATCC 11170]
Length = 361
Score = 39.6 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 44/146 (30%), Gaps = 37/146 (25%)
Query: 55 LMWMTFGLACCA----------------------VEMMQASMPRYDLERFGFAPRASPRQ 92
+ CC+ + + + E R + R
Sbjct: 55 IWLHGLECTCCSESFIRSAHPLVSDVVLSMLSLDYDDTLMAAAGHQAEAILAETRETYRG 114
Query: 93 SDVMIVAGTLTNKM---------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
++ V G + + + + VI+ GSCA+ G +
Sbjct: 115 RYILAVEGNAPLANDGFFCMPGGRPFVDTLKEMAADSAAVIAWGSCASWGCVQAAKPNPT 174
Query: 144 R--GCDRIV---PVDIYVPGCPPTAE 164
D+++ P+ I VPGCPP AE
Sbjct: 175 GAVPIDQVITGKPL-IKVPGCPPIAE 199
>gi|282165123|ref|YP_003357508.1| coenzyme F420 hydrogenase subunit gamma [Methanocella paludicola
SANAE]
gi|282157437|dbj|BAI62525.1| coenzyme F420 hydrogenase subunit gamma [Methanocella paludicola
SANAE]
Length = 235
Score = 39.6 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG--------GGYYHYS-YSVV 143
D++ V G + A+ + Y+++ G C++ GG +
Sbjct: 52 VDIVFVDGAACLQSEDAVETLKKARENATYLVAWGGCSSTATINNFSRGGQLPQPQHESF 111
Query: 144 RGCDRIVPVDIYVPGCPPTA 163
R+V VD VPG PP
Sbjct: 112 PPIKRLVKVDASVPGSPPGP 131
>gi|288940547|ref|YP_003442787.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium
vinosum DSM 180]
gi|288895919|gb|ADC61755.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Allochromatium
vinosum DSM 180]
Length = 251
Score = 39.6 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 25/102 (24%)
Query: 81 RFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----- 135
+F A + + G+ T A R + + V+++G+CA+ GG
Sbjct: 38 QFREAMSERGEDYQIAFIEGSCTRPSDEAKIREIREQAQ--IVVALGACAHLGGINAIRN 95
Query: 136 -----------------YHYSYSVVRGCDRIVPVDIYVPGCP 160
+ +Y R ++ VD +PGCP
Sbjct: 96 RMPLEQTREYVYGDKKDWFETYPA-RPLSAVIEVDAVIPGCP 136
>gi|291288447|ref|YP_003505263.1| hydrogenase (NiFe) small subunit HydA [Denitrovibrio acetiphilus
DSM 12809]
gi|290885607|gb|ADD69307.1| hydrogenase (NiFe) small subunit HydA [Denitrovibrio acetiphilus
DSM 12809]
Length = 310
Score = 39.6 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 18/91 (19%)
Query: 94 DVMIVAGTLTNKMASALRR----VYDQMPEPR----YVISMGSCANGGGYYHYSYSVVRG 145
++++ G++ +M A +YD + + V++ GSC+ GG +
Sbjct: 103 HILVLEGSIPAEMKKACMLGEEPLYDALKKHLEKASAVVASGSCSCFGGIPASGANETGA 162
Query: 146 CDRI---------VPVDIYVPGCPPTAEALI 167
D + P+ I +PGCP + L+
Sbjct: 163 IDIVQYMRETGISKPL-IKIPGCPVHPDRLM 192
>gi|225850249|ref|YP_002730483.1| quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound
hydrogenase small subunit)
(Hydrogen:quinoneoxidoreductase) [Persephonella marina
EX-H1]
gi|225646449|gb|ACO04635.1| quinone-reactive Ni/Fe-hydrogenase small chain (Membrane-bound
hydrogenase small subunit)
(Hydrogen:quinoneoxidoreductase) [Persephonella marina
EX-H1]
Length = 414
Score = 39.6 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 95 VMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---YHYSYSVVRGCDRI-- 149
M A T+ + + + V+++GSCA GG Y V D +
Sbjct: 176 GMPEAFTIGRHAKTGVEHLKHLAEHSAAVVAVGSCAAFGGVPAAYPNPTGAVGVMDIVKG 235
Query: 150 VPVDIYVPGCPPTAEAL 166
PV + +P CP +
Sbjct: 236 KPV-VNIPACPANPANI 251
>gi|126178958|ref|YP_001046923.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Methanoculleus
marisnigri JR1]
gi|125861752|gb|ABN56941.1| F420-non-reducing hydrogenase subunit G [Methanoculleus marisnigri
JR1]
Length = 305
Score = 39.6 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 37/115 (32%)
Query: 90 PRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--------- 139
P D+ V G + + L ++ + +I++G+CA GG S
Sbjct: 47 PEDIDIAFVTGAVRNEENRERLEKI---RKRSKTLIALGTCACYGGVSGLSMLSSNEDLF 103
Query: 140 YSVVRGC-----DRIVPVDI------------------YVPGCPPTAEALIYGIL 171
V R D ++P D+ Y+ GCPP EA + I+
Sbjct: 104 SCVYREVETTKPDGVIPTDVPPFLYRAFAVGDLVKIDYYIVGCPPK-EAFLKQII 157
>gi|161614026|ref|YP_001587991.1| hypothetical protein SPAB_01765 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|238911769|ref|ZP_04655606.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|161363390|gb|ABX67158.1| hypothetical protein SPAB_01765 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|321224159|gb|EFX49222.1| Uptake hydrogenase small subunit precursor [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
Length = 330
Score = 39.6 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPT 162
L ++ + + +I+ GSCA+ G + + +++ P+ I VPGCPP
Sbjct: 102 PFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVHKLITDKPI-IKVPGCPPI 160
Query: 163 AEALIYGILL 172
E ++ ++
Sbjct: 161 PE-VMSAVIT 169
>gi|326402517|ref|YP_004282598.1| Ni/Fe-hydrogenase small subunit [Acidiphilium multivorum AIU301]
gi|325049378|dbj|BAJ79716.1| Ni/Fe-hydrogenase small subunit [Acidiphilium multivorum AIU301]
Length = 373
Score = 39.2 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV---PVDIYVPGCPP 161
+ ++ + VI+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 139 KPFVEKLKAVAADAMAVIAWGACASWGCVQAARPNPTAATPIDKVITGKPI-IKVPGCPP 197
Query: 162 TAE 164
AE
Sbjct: 198 IAE 200
>gi|172037231|ref|YP_001803732.1| hydrogenase small subunit [Cyanothece sp. ATCC 51142]
gi|171698685|gb|ACB51666.1| hydrogenase small subunit [Cyanothece sp. ATCC 51142]
Length = 181
Score = 39.2 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 36/120 (30%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------Y 136
P DV +V G + N+ L+ + + + + ++S G CA
Sbjct: 49 PDDVDVCLVEGAIANE--ENLQLIKEIRQKTKLIVSFGDCAVTANVPAMRNMLGPAETVL 106
Query: 137 HYSY---------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
SY V ++ VD+++PGCPP A + I L +
Sbjct: 107 KRSYLELGDVTPQLPQEPGIVPELLDRVSPVHEVIKVDLFLPGCPPDAHRIRAAIEPLLQ 166
>gi|156743734|ref|YP_001433863.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
castenholzii DSM 13941]
gi|156235062|gb|ABU59845.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Roseiflexus
castenholzii DSM 13941]
Length = 323
Score = 39.2 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 26/89 (29%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI----------------- 149
L V P+ V+++G CA GG + + D I
Sbjct: 91 RPMLEWVQMLAPQAGIVVAIGDCACWGGIPAVAPN---PSDSIGLQFLRREAGGFLGKDF 147
Query: 150 -----VPVDIYVPGCPPTAEALIYGILLL 173
+PV I +PGCP + + ++ L
Sbjct: 148 RSKLGLPV-INIPGCPAHPDWITQIVVAL 175
>gi|148259357|ref|YP_001233484.1| hydrogenase (NiFe) small subunit HydA [Acidiphilium cryptum JF-5]
gi|146401038|gb|ABQ29565.1| hydrogenase (NiFe) small subunit HydA [Acidiphilium cryptum JF-5]
Length = 373
Score = 39.2 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV---PVDIYVPGCPP 161
+ ++ + VI+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 139 KPFVEKLKAVAADAMAVIAWGACASWGCVQAARPNPTAATPIDKVITGKPI-IKVPGCPP 197
Query: 162 TAE 164
AE
Sbjct: 198 IAE 200
>gi|86743172|ref|YP_483572.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Frankia sp. CcI3]
gi|86570034|gb|ABD13843.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Frankia sp. CcI3]
Length = 278
Score = 39.2 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 23/98 (23%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135
D+ +V G++T + + R++ R ++++G+CA GG
Sbjct: 67 DLSLVEGSVTTEQD--VERIHQVRAASRRLVTIGACATAGGIQALRNFADVGDFLAAVYA 124
Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGI 170
Y + + V VD + GCP L+ I
Sbjct: 125 TPAYVSTLATSTPISTHVRVDFELQGCPINPRQLLEVI 162
>gi|312113743|ref|YP_004011339.1| hydrogenase (NiFe) small subunit HydA [Rhodomicrobium vannielii
ATCC 17100]
gi|311218872|gb|ADP70240.1| hydrogenase (NiFe) small subunit HydA [Rhodomicrobium vannielii
ATCC 17100]
Length = 356
Score = 39.2 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + VIS GSCA+ G + + +++ P+ I VPGCPP
Sbjct: 136 KPFVEQLKYAAANAKAVISWGSCASWGCVQAAKPNPTQAVPVHKVIHDKPI-IRVPGCPP 194
Query: 162 TAE 164
E
Sbjct: 195 IPE 197
>gi|313673511|ref|YP_004051622.1| NADH ubiquinone oxidoreductase 20 kda subunit [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940267|gb|ADR19459.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Calditerrivibrio
nitroreducens DSM 19672]
Length = 176
Score = 39.2 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 37/121 (30%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------- 135
P DV V G ++ ++++ + + R +++MG CA G
Sbjct: 48 PESVDVTFVEGAIS--TTEDIKKIKEIRKKSRIIVAMGDCAITGNVPSMRNSFNLNSVID 105
Query: 136 --------------YHYSY---SVVRGCDRIVPVDIYVPGCPPTAEA---LIYGILLLQK 175
++ + V + I+ V+ Y+PGCPP A+A LI IL Q+
Sbjct: 106 RGYGENSDNQSKVEFYDLPPLLTNVLPVNSIIHVNFYLPGCPPPADAFYNLIKSILN-QE 164
Query: 176 K 176
K
Sbjct: 165 K 165
>gi|288942018|ref|YP_003444258.1| hydrogenase (NiFe) small subunit hydA [Allochromatium vinosum DSM
180]
gi|288897390|gb|ADC63226.1| hydrogenase (NiFe) small subunit HydA [Allochromatium vinosum DSM
180]
Length = 365
Score = 39.2 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--DRIV---PVDIYVPGCPP 161
L ++ + + + VI+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFLDQLREVASDCQAVIAWGTCASWGCVQAAHPNPTQAVSIDKVIHDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|84489136|ref|YP_447368.1| MvhG [Methanosphaera stadtmanae DSM 3091]
gi|84372455|gb|ABC56725.1| MvhG [Methanosphaera stadtmanae DSM 3091]
Length = 305
Score = 39.2 bits (90), Expect = 0.25, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
S VR ++ VD +PGCPP +E + ++ L K
Sbjct: 135 SRVRPLADVIKVDAALPGCPPKSEVIAQVVIALVK 169
>gi|254413266|ref|ZP_05027037.1| NADH ubiquinone oxidoreductase, 20 Kd subunit superfamily
[Microcoleus chthonoplastes PCC 7420]
gi|196179886|gb|EDX74879.1| NADH ubiquinone oxidoreductase, 20 Kd subunit superfamily
[Microcoleus chthonoplastes PCC 7420]
Length = 182
Score = 39.2 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 36/120 (30%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANG----------GG---YY 136
P DV +V G + N+ L R+ + +++IS G CA GG
Sbjct: 50 PEDVDVCLVEGGVANEENLELIRIARE--RTKFLISFGDCAVTANVPALRNMLGGAEPVL 107
Query: 137 HYSY---------------------SVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
Y VR +V VD+++PGCPP A+ + I L +
Sbjct: 108 KRCYLELGDANPQLPNFPGIVPELLDRVRPVHELVHVDLFMPGCPPPADRIQATIEPLLR 167
>gi|221633851|ref|YP_002523077.1| nickel-dependent hydrogenase small subunit [Thermomicrobium roseum
DSM 5159]
gi|221157076|gb|ACM06203.1| nickel-dependent hydrogenase, small subunit [Thermomicrobium roseum
DSM 5159]
Length = 346
Score = 39.2 bits (90), Expect = 0.26, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 22/118 (18%)
Query: 69 MMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
+++ S+P ++R G+ + + T++ L P+ V++ G+
Sbjct: 85 VVEGSIPNEAVKREGYWCGFGNDPATGQPIT---TSEWLDRL------APKAWAVVAAGT 135
Query: 129 CANGGGYYHYSYSVVR--GCDRI----------VPVDIYVPGCPPTAEALIYGILLLQ 174
CA GG + + + G +PV + VPGCP + + +L L
Sbjct: 136 CATYGGIHAMAGNPTGAMGVPDYLGWNWRSKAGIPV-VCVPGCPIHPDNMAETLLYLL 192
>gi|94310242|ref|YP_583452.1| hydrogenase (NiFe) small subunit HydA [Cupriavidus metallidurans
CH34]
gi|93354094|gb|ABF08183.1| HoxK membrane-bound (NiFe) hydrogenase small subunit (belongs to
CMGI-2) [Cupriavidus metallidurans CH34]
Length = 364
Score = 39.2 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + +I+ GSCA+ G + + +++ P+ I VPGCPP
Sbjct: 135 KPFIDKLKHVAKDAKAIIAWGSCASWGCVQAAKPNPTQATPIHKVITDKPI-IKVPGCPP 193
Query: 162 TAE 164
E
Sbjct: 194 IPE 196
>gi|166368535|ref|YP_001660808.1| hydrogenase subunit of the bidirectional hydrogenase [Microcystis
aeruginosa NIES-843]
gi|159028666|emb|CAO88137.1| hoxY [Microcystis aeruginosa PCC 7806]
gi|166090908|dbj|BAG05616.1| hydrogenase subunit of the bidirectional hydrogenase [Microcystis
aeruginosa NIES-843]
Length = 182
Score = 39.2 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 36/127 (28%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG--------- 133
G + P DV +V G + N+ L + Q + V+S G CA
Sbjct: 43 GCDLKTYPENVDVCLVEGAIANQDNLELIHLVRQ--NTKTVVSFGDCAVTANVPAMRNML 100
Query: 134 -------------------------GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIY 168
G V +++P+DI++PGCPP A+ +
Sbjct: 101 GTADPVLKRAYLELGDNTPQLPEEPGIVPELLDQVLPVHQVIPIDIFMPGCPPDADRIRE 160
Query: 169 GILLLQK 175
++ + K
Sbjct: 161 TLIPILK 167
>gi|303327067|ref|ZP_07357509.1| periplasmic [NiFe] hydrogenase, small subunit, isozyme 1
[Desulfovibrio sp. 3_1_syn3]
gi|302863055|gb|EFL85987.1| periplasmic [NiFe] hydrogenase, small subunit, isozyme 1
[Desulfovibrio sp. 3_1_syn3]
Length = 315
Score = 39.2 bits (90), Expect = 0.27, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
Query: 117 MPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRI---VPV-DIYVPGCPPTAEALIYGI 170
+P+ + V+SMG+CA GG + + +G + + V I + GCPP L+ +
Sbjct: 151 LPKAKAVVSMGTCACYGGVQAAKPNPTAAKGVNDAFGDLGVKAINIAGCPPNPLNLVGTL 210
Query: 171 LLLQK--KIR 178
+ K KI
Sbjct: 211 VAFLKGQKIE 220
>gi|15611641|ref|NP_223292.1| hydrogenase, small subunit [Helicobacter pylori J99]
gi|4155126|gb|AAD06157.1| Hydrogenase, small subunit [Helicobacter pylori J99]
Length = 384
Score = 39.2 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRG 145
P+ ++ + G A R+V + ++G+C++ GG + + S +
Sbjct: 147 GIPQGTEYFLTQGPNAETGAEECRKVAQ---HAAAIFAIGTCSSFGGVQAAYPNPSNAQP 203
Query: 146 CDRIV--PVDIYVPGCPPT 162
+I+ PV I VPGCPP+
Sbjct: 204 LHKIIDKPV-INVPGCPPS 221
>gi|170761714|ref|YP_001787164.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum A3 str.
Loch Maree]
gi|169408703|gb|ACA57114.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum A3 str.
Loch Maree]
Length = 290
Score = 39.2 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDI-YVPGCPPTAEA 165
AL + + +YV+++G+C++ GG + S + + ++ ++ +PGCP +
Sbjct: 125 ALEAIKMAGEKAKYVVAVGTCSSYGGISAARPNPSGSKSVEAVINKEVIKLPGCPCHPDW 184
Query: 166 LIYGILLL 173
++ + L
Sbjct: 185 VVGTLAHL 192
>gi|220909410|ref|YP_002484721.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
7425]
gi|219866021|gb|ACL46360.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
7425]
Length = 182
Score = 39.2 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 143 VRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
V +VPVDI++PGCPP A+ + I L K
Sbjct: 135 VLPIHEVVPVDIFMPGCPPPADRIKATIAPLLK 167
>gi|260576158|ref|ZP_05844151.1| hydrogenase (NiFe) small subunit HydA [Rhodobacter sp. SW2]
gi|259021638|gb|EEW24941.1| hydrogenase (NiFe) small subunit HydA [Rhodobacter sp. SW2]
Length = 361
Score = 39.2 bits (90), Expect = 0.29, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS G+CA+ G S + R +++ P+ I VPGCPP
Sbjct: 138 KPFVEQLKMAAEHAKAIISWGACASYGCVQAASPNPTRATPVHKVILDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|20378786|gb|AAM20987.1| hydrogenase small subunit [Rhizobium tropici]
Length = 183
Score = 38.8 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ VI+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 71 RPFVEKLKWMAEGALAVIAWGTCASSGCVQAATPNPTEATPIDKVIRDKPI-IKVPGCPP 129
Query: 162 TAE 164
AE
Sbjct: 130 IAE 132
>gi|332704235|ref|ZP_08424323.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio africanus str.
Walvis Bay]
gi|332554384|gb|EGJ51428.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio africanus str.
Walvis Bay]
Length = 307
Score = 38.8 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 22/68 (32%)
Query: 115 DQMPEPRYVISMGSCANGGGY---------------YHYSYSVVRGCDRIVPVDIYVPGC 159
+ + I++GSC GG ++ S ++ + +PGC
Sbjct: 139 ELGKDAAACIALGSCGAYGGIPAAKGNLTGCVGLRDFYQSKNISTPV-------VNIPGC 191
Query: 160 PPTAEALI 167
PP + +I
Sbjct: 192 PPHPDWII 199
>gi|313896874|ref|ZP_07830421.1| putative hydrogenase-2 small chain [Selenomonas sp. oral taxon 137
str. F0430]
gi|312974321|gb|EFR39789.1| putative hydrogenase-2 small chain [Selenomonas sp. oral taxon 137
str. F0430]
Length = 362
Score = 38.8 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 49/139 (35%), Gaps = 16/139 (11%)
Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPR--YDLERFGFAPRASPRQSDVMIVAGTLTNKM 106
+ R+G+ + L C A+E E ++ V G +
Sbjct: 69 FIRSGAPLASDLILNCIALEYSHVLSAGCGAPFEEHLEKTMEKYHGEYILAVEGGVAVGT 128
Query: 107 ASAL---------RRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV--RGCDRIVPVDIY 155
+ + + V++ G+CA GG + + RG ++ Y
Sbjct: 129 HAYTCMSGGHSFEHTLKRVAAGAKAVVAYGTCATSGGIQAAAPNPTESRGIRSLIGAKPY 188
Query: 156 V--PGCPPTAEALIYGILL 172
+ PGCPP E ++ G+L+
Sbjct: 189 IAVPGCPPIPE-VMTGVLM 206
>gi|195953772|ref|YP_002122062.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp.
Y04AAS1]
gi|195933384|gb|ACG58084.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Hydrogenobaculum sp.
Y04AAS1]
Length = 294
Score = 38.8 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 23/107 (21%)
Query: 91 RQSDVMIVAGTLTNKMASALRRVYDQM-----PEPRYVISMGSCANGGGYYHYSYSVVRG 145
++ D++IV G + + + + + +YVI++G CA+ GG + + + + G
Sbjct: 55 KELDILIVEGAIGKSIRHVCSYSFSNIVKILSSKAKYVIALGDCASFGGIHAKAGTHITG 114
Query: 146 CD-----------------RIVPVDIYVPGCPPTAEALIYGILLLQK 175
PV I + GCP E + Y I L +
Sbjct: 115 LQFRFKEFGGLLGKAFLSKSSYPV-INIAGCPAHPEWVYYVISALLE 160
>gi|291287135|ref|YP_003503951.1| hydrogenase (NiFe) small subunit HydA [Denitrovibrio acetiphilus
DSM 12809]
gi|290884295|gb|ADD67995.1| hydrogenase (NiFe) small subunit HydA [Denitrovibrio acetiphilus
DSM 12809]
Length = 367
Score = 38.8 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCD-----RIVPVDIYVPGCPPTAEALIYGIL 171
VI++G+C++ GG + + + + PV I VPGCPP+ L+ IL
Sbjct: 147 AMVINIGTCSSFGGVQAAAPNPTKAVSAASLVKDKPV-INVPGCPPSPYNLLAVIL 201
>gi|302342833|ref|YP_003807362.1| hydrogenase (NiFe) small subunit HydA [Desulfarculus baarsii DSM
2075]
gi|301639446|gb|ADK84768.1| hydrogenase (NiFe) small subunit HydA [Desulfarculus baarsii DSM
2075]
Length = 313
Score = 38.8 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPV-DIYVPGCPPTA 163
+ + V++MG+CA GG + + G + + I + GCPP
Sbjct: 138 RPMIEIAKEAAKGAVAVMAMGTCACYGGVQAAKPNPTKAMGVGEALGIQTINLAGCPPNP 197
Query: 164 EALIYGILL 172
+ ++
Sbjct: 198 VNAVSAVVQ 206
>gi|300087161|ref|YP_003757683.1| hydrogenase (NiFe) small subunit HydA [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299526894|gb|ADJ25362.1| hydrogenase (NiFe) small subunit HydA [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 349
Score = 38.8 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 10/69 (14%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRI-------VPVDIYVPG 158
+ + I++G+CA GG + V G PV I V G
Sbjct: 137 PMTETIERLGKKAIATIALGTCACSGGISASPPNPGEVVGVAEFYERKGITTPV-INVTG 195
Query: 159 CPPTAEALI 167
CPP + L+
Sbjct: 196 CPPHPDWLV 204
>gi|332704232|ref|ZP_08424320.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio africanus str.
Walvis Bay]
gi|332554381|gb|EGJ51425.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio africanus str.
Walvis Bay]
Length = 317
Score = 38.8 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 118 PEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV----PVDIYVPGCPPTAEALIYGIL 171
P+ + VI++G+CA G + + +G + + I + GCPP + ++
Sbjct: 153 PKAKAVIAIGNCATFGNIQAAKPNPTGAQGVNEALGNLGVKAINIAGCPPNPINFVGTVV 212
Query: 172 LLQKK 176
L +K
Sbjct: 213 HLLQK 217
>gi|170754415|ref|YP_001781389.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum B1 str.
Okra]
gi|169119627|gb|ACA43463.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum B1 str.
Okra]
Length = 290
Score = 38.8 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVDI-YVPGCPPTAEA 165
AL + + +YV+++G+C++ GG S + + ++ ++ +PGCP +
Sbjct: 125 ALEAIKMAGEKAKYVVTVGTCSSYGGISAASPNPSGSKSVEAVINKEVIKLPGCPCHPDW 184
Query: 166 LIYGILLL 173
++ + L
Sbjct: 185 VVGTLAHL 192
>gi|23296068|gb|AAN12285.1| hydrogenase small subunit [Aquifex pyrophilus]
Length = 280
Score = 38.8 bits (89), Expect = 0.32, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 35/137 (25%)
Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS-------DVMIVAGT 101
+ R+ SL+ L ++E + M G S R++ +++V G+
Sbjct: 31 FIRSTSLLPTEVLLEFISLEYHETLMAPS-----GDYAEESKREAIEKYKGKYILVVEGS 85
Query: 102 LT----------NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC----- 146
+T L+ + +V+S+GSCA+ GG S +
Sbjct: 86 VTPNGVYCTVGGRSNYELLKEAAENAA---FVVSVGSCASWGGIPKASPNPTGAVPVYEV 142
Query: 147 --DRIVPVDIYVPGCPP 161
D+ V + VPGCPP
Sbjct: 143 IKDKTV---VNVPGCPP 156
>gi|124267992|ref|YP_001021996.1| hydrogenase small chain [Methylibium petroleiphilum PM1]
gi|124260767|gb|ABM95761.1| hydrogenase small chain [Methylibium petroleiphilum PM1]
Length = 339
Score = 38.8 bits (89), Expect = 0.33, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 20/85 (23%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV---------------VRGCD----R 148
+ V R+V+++GSCA GG + + G D
Sbjct: 101 PMIHWVSRLAARARHVVAVGSCAAWGGVTAGGDNPTDACGLQFEDDRRGGLLGADFRSES 160
Query: 149 IVPVDIYVPGCPPTAEALIYGILLL 173
+PV I + GCP +I ++ L
Sbjct: 161 GLPV-INIAGCPTHPSWVIDTLMAL 184
>gi|13022074|gb|AAK11628.1|AF331720_2 [NiFe] hydrogenase small subunit precursor [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 321
Score = 38.8 bits (89), Expect = 0.33, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 124 ISMGSCANGGGYYH--YSYSVVRGCDRIVPV----DIYVPGCPPTAEALIYGILLLQKK 176
I+MGSCA GG + S +G + + I + GCPP + ++ L K
Sbjct: 157 IAMGSCACFGGVQAAAPNPSGAKGVNEALKAVGVNAINIAGCPPNPMNFVGTVVHLLTK 215
>gi|323223054|gb|EGA07398.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
Length = 211
Score = 38.8 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPT 162
L ++ + + +I+ GSCA+ G + + +++ P+ I VPGCPP
Sbjct: 102 PFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVHKLITDKPI-IKVPGCPPI 160
Query: 163 AE 164
E
Sbjct: 161 PE 162
>gi|213860071|ref|ZP_03385775.1| NADH dehydrogenase subunit B [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 62
Score = 38.8 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 160 PPTAEALIYGILLLQKKIRRVGN 182
PP EA + ++LLQ+ I +
Sbjct: 1 PPRPEAYMQALMLLQESIGKERR 23
>gi|77919014|ref|YP_356829.1| leucyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
gi|123729465|sp|Q3A4P8|SYL_PELCD RecName: Full=Leucyl-tRNA synthetase; AltName: Full=Leucine--tRNA
ligase; Short=LeuRS
gi|77545097|gb|ABA88659.1| leucyl-tRNA synthetase [Pelobacter carbinolicus DSM 2380]
Length = 851
Score = 38.8 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 22/170 (12%)
Query: 16 SCSLEKVDADF--SRISSEITHKGFLVTSVD-QLVTWARTG-SLM----WMTFGLACCAV 67
S + +D + +I++ + +G +V+ +L W + + + AC V
Sbjct: 387 SAPFDGLDNESAKEKIAAHLEEQGVGRKTVNYRLRDWGVSRQRYWGTPIPIIYCPACGIV 446
Query: 68 EMMQASMP---RYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVI 124
+ + +P D+E G R + + V A +D E +
Sbjct: 447 PVPEEDLPVLLPMDVEISGEGGSPLARHQEFLKVTCPTCGGDARRETDTFDTFVESSWYF 506
Query: 125 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
+ +C + D +PVD Y+ G + + ++ L
Sbjct: 507 ARYTCPR----FEQGPVDRATVDHWLPVDQYIGG-------IEHAVMHLL 545
>gi|149204146|ref|ZP_01881114.1| hydrogenase small subunit [Roseovarius sp. TM1035]
gi|149142588|gb|EDM30633.1| hydrogenase small subunit [Roseovarius sp. TM1035]
Length = 330
Score = 38.8 bits (89), Expect = 0.34, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 24/110 (21%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYS--- 139
G R ++AGT M LR + P +V+++G+CA GG
Sbjct: 72 GSILRGPNGTGRFHMLAGT-GRSMLDWLRDL---APRAGHVVAVGTCATYGGVTSAGENP 127
Query: 140 ---------YSVVRGC-------DRIVPVDIYVPGCPPTAEALIYGILLL 173
+ V G +PV I V GCP + + +L+L
Sbjct: 128 ADAVGVQYDGAHVGGALAAEFRSRSGLPV-INVAGCPTHPDWVTETLLML 176
>gi|327399254|ref|YP_004340123.1| hydrogenase (NiFe) small subunit HydA [Hippea maritima DSM 10411]
gi|327181883|gb|AEA34064.1| hydrogenase (NiFe) small subunit HydA [Hippea maritima DSM 10411]
Length = 395
Score = 38.8 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD-IYVPGCPP 161
L R + + ++ G+CA GG + G + ++ + VPGCPP
Sbjct: 170 LERAKRVTKDAKVNLAFGTCAAFGGVQAAHPNPTGAKGVHDALGIEIVNVPGCPP 224
>gi|295086042|emb|CBK67565.1| Homologues of TraJ from Bacteroides conjugative transposon.
[Bacteroides xylanisolvens XB1A]
Length = 339
Score = 38.8 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 110 LRRVYDQMPEPRYVISMGSCANG--GGYYHYSYSVVRGCDRIVPVDIY 155
LRR+YD+M E + + A G ++ +Y V + R PVD++
Sbjct: 15 LRRLYDEMTELCQPMMTLATAIAALGALFYIAYRVWQSLSRAEPVDVF 62
>gi|253570729|ref|ZP_04848137.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251839678|gb|EES67761.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 339
Score = 38.8 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 110 LRRVYDQMPEPRYVISMGSCANG--GGYYHYSYSVVRGCDRIVPVDIY 155
LRR+YD+M E + + A G ++ +Y V + R PVD++
Sbjct: 15 LRRLYDEMTELCQPMMTLATAIAALGALFYIAYRVWQSLSRAEPVDVF 62
>gi|195953799|ref|YP_002122089.1| hydrogenase (NiFe) small subunit HydA [Hydrogenobaculum sp.
Y04AAS1]
gi|195933411|gb|ACG58111.1| hydrogenase (NiFe) small subunit HydA [Hydrogenobaculum sp.
Y04AAS1]
Length = 320
Score = 38.8 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 28/173 (16%), Positives = 61/173 (35%), Gaps = 44/173 (25%)
Query: 43 VDQLVTWARTGS----LMWMTFGLACCAVEMMQASMPRY-DLERFGFAPRASPRQSD--- 94
++ ++ + L + CC+ +M++S P + D+ +
Sbjct: 36 INDIINALKQKPRIPVLWFHGLECTCCSESLMRSSSPVFSDMVSLISLEYDDLISASCGE 95
Query: 95 -----------------VMIVAGTLTNKMASAL---------RRVYDQMPEPRYVISMGS 128
++ + G++T A + + + +I+ GS
Sbjct: 96 NLLNYKKKIIEQYKGNYILAIEGSITEFEDGACCMVGGRSFNEELLEAAEGAKAIIAWGS 155
Query: 129 CANGGGYY--HYSYSVVRGCDRIV---PVDIYVPGCPPTAE----ALIYGILL 172
CA+ G + + + D I+ P+ + VPGCPP E ++Y +L
Sbjct: 156 CASFGCVQVAYPNPTKSSSVDTIIKNKPI-VKVPGCPPIPEVMASVIVYMLLK 207
>gi|183983481|ref|YP_001851772.1| coenzyme F420-reducing hydrogenase, gamma subunit [Mycobacterium
marinum M]
gi|183176807|gb|ACC41917.1| coenzyme F420-reducing hydrogenase, gamma subunit [Mycobacterium
marinum M]
Length = 251
Score = 38.8 bits (89), Expect = 0.37, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 25/111 (22%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135
DV +V G++T +R+ + + + +I++G+CA GG
Sbjct: 53 DVSLVEGSITTHHDE--QRIQEIRAQSKLLITIGACATAGGVQALRNFADVAEFTSVVYA 110
Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRVGNV 183
Y + + V VD + GCP L+ + L I R +
Sbjct: 111 KPEYIDTLATSTPISAHVKVDYQLHGCPIDRGQLLDTLEALL--IGRKPRL 159
>gi|16760329|ref|NP_455946.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29141907|ref|NP_805249.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|289826327|ref|ZP_06545439.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25285663|pir||AH0675 hydrogenase (EC 1.18.99.1) - Salmonella enterica subsp. enterica
serovar Typhi (strain CT18)
gi|16502624|emb|CAD01777.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137535|gb|AAO69098.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
Length = 367
Score = 38.8 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---IYVPGCPPT 162
L ++ + + +I+ GSCA+ G + + +++ D I VPGCPP
Sbjct: 139 PFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVHKLI-TDKTIIKVPGCPPI 197
Query: 163 AEALIYGILL 172
E ++ ++
Sbjct: 198 PE-VMSAVIT 206
>gi|300785686|ref|YP_003765977.1| hydrogenase small subunit [Amycolatopsis mediterranei U32]
gi|299795200|gb|ADJ45575.1| hydrogenase small subunit [Amycolatopsis mediterranei U32]
Length = 353
Score = 38.4 bits (88), Expect = 0.39, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 13/70 (18%)
Query: 117 MPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRI----------VPVDIYVPGCPPTAE 164
P+ V+++G+CA GG + + G +P+ + VPGCP +
Sbjct: 132 TPKALAVMAVGTCATYGGIHAMEGNPTGAMGVPDYLGWDWKSGAGIPI-VCVPGCPTHPD 190
Query: 165 ALIYGILLLQ 174
L I L
Sbjct: 191 NLSETITYLL 200
>gi|148263195|ref|YP_001229901.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
uraniireducens Rf4]
gi|146396695|gb|ABQ25328.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
uraniireducens Rf4]
Length = 251
Score = 38.4 bits (88), Expect = 0.39, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 30/111 (27%)
Query: 79 LERFGFAPRAS-------PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
ERF FA DV V G ++ L + + ++++G+CA
Sbjct: 32 AERFRFAWFPMGLSGSDECGPLDVAFVEGAVSTP--EDLETLINLRNRSSLLVAIGTCAI 89
Query: 132 GGGY----------------YHYSYSVV-----RGCDRIVPVDIYVPGCPP 161
GG Y S + R V VD + GCPP
Sbjct: 90 WGGIAAMKNNESRKELAETIYGDSAHSIKTFAPGPLQRFVTVDFAITGCPP 140
>gi|119897705|ref|YP_932918.1| hydrogen dehydrogenase subunit delta [Azoarcus sp. BH72]
gi|119670118|emb|CAL94031.1| probable hydrogen dehydrogenase, delta subunit [Azoarcus sp. BH72]
Length = 190
Score = 38.4 bits (88), Expect = 0.39, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 43/145 (29%)
Query: 63 ACCAVEMMQA--------SMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVY 114
C M + + +R D+ ++ G + N + R +
Sbjct: 25 GCFGCHMSLLDIDERIFELAAKVEFDRSPLTDIKHCGPCDIGLIEGGVCNAENVHVLREF 84
Query: 115 DQMPEPRYVISMGSCANGGGY------------YHYSYSVVRGCD--------------- 147
+ + ++++G+CA GG Y G D
Sbjct: 85 RRNCKT--LVAVGACAINGGLPAQRNHLDVGACLQEVYCYREGLDGAGVPDDPELPLLLD 142
Query: 148 ------RIVPVDIYVPGCPPTAEAL 166
+V VD ++PGCPP+ +A+
Sbjct: 143 KVRPIHEVVRVDYFLPGCPPSGDAI 167
>gi|78358794|ref|YP_390243.1| hydrogenase (NiFe) small subunit (hydA) [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78221199|gb|ABB40548.1| hydrogenase (NiFe) small subunit (hydA) [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 321
Score = 38.4 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 124 ISMGSCANGGGYYH--YSYSVVRGCDRIVPV----DIYVPGCPPTAEALIYGILLLQKK 176
I+MGSCA GG + S +G + + I + GCPP + ++ L K
Sbjct: 157 IAMGSCACFGGVQAAAPNPSGAKGVNEALKAVGVNAINIAGCPPNPMNFVGTVVHLLTK 215
>gi|295696641|ref|YP_003589879.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Bacillus tusciae DSM
2912]
gi|295412243|gb|ADG06735.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Bacillus tusciae DSM
2912]
Length = 323
Score = 38.4 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 31/110 (28%)
Query: 94 DVMIVAGTL-----------TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
D+++V GT+ T ++D + RYV+++G CA GG +
Sbjct: 67 DILVVEGTVILGPNGTGRYNTMMDRPTKDWIWDLAHKARYVVAVGDCACWGGIVAIHPNP 126
Query: 143 ---------------VRGCD----RIVPVDIYVPGCPPTAEALIYGILLL 173
G D +PV I +PGCP ++ + ++ +
Sbjct: 127 TESIGLQYLRKEEGGFLGADFRSKAGLPV-INIPGCPAHSDWITQVLVAI 175
>gi|20378788|gb|AAM20988.1| hydrogenase small subunit [Rhizobium tropici]
Length = 192
Score = 38.4 bits (88), Expect = 0.41, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ VI+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 80 RPFVEKLKWMAEGALAVIAWGTCASSGCVQAATPNPTEATPIDKVIRDKPI-IKVPGCPP 138
Query: 162 TAE 164
AE
Sbjct: 139 IAE 141
>gi|209525019|ref|ZP_03273563.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arthrospira maxima
CS-328]
gi|209494428|gb|EDZ94739.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arthrospira maxima
CS-328]
Length = 182
Score = 38.4 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 36/118 (30%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG--------- 133
G + P DV +V G + N+ L + + + +IS G CA
Sbjct: 43 GCDLKEYPENVDVCLVEGGIANE--DNLELIKEVRSRTKLLISFGDCAVTANVPAMRNML 100
Query: 134 -------------------------GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
G V +V VDI++PGCPP+A+ +
Sbjct: 101 GSTDHVLKRCYLELGDFTPQLPREPGIVPELLERVTPVHEVVDVDIFMPGCPPSADRI 158
>gi|206890223|ref|YP_002249169.1| F420-non-reducing hydrogenase subunit G [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742161|gb|ACI21218.1| F420-non-reducing hydrogenase subunit G [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 318
Score = 38.4 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 144 RGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
R D +V VD Y+ GCPP E + L
Sbjct: 152 RPLDEVVKVDYYIGGCPPHYEHVKAAFTALL 182
>gi|163744630|ref|ZP_02151990.1| hypothetical protein OIHEL45_03565 [Oceanibulbus indolifex HEL-45]
gi|161381448|gb|EDQ05857.1| hypothetical protein OIHEL45_03565 [Oceanibulbus indolifex HEL-45]
Length = 340
Score = 38.4 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
E A + G +PR + V++V GT+ + L R++DQ+P PR
Sbjct: 21 EGAPADAASVLAKSPGLRVVETPRAAAVLLVVGTIPEALIPQLHRLHDQLPHPRASALWH 80
Query: 128 S 128
S
Sbjct: 81 S 81
>gi|20378772|gb|AAM20980.1| hydrogenase small subunit [Bradyrhizobium sp. UPM1167]
Length = 179
Score = 38.4 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ R+ VI+ G+CA+ G + D+++ P+ + VPGCPP
Sbjct: 80 KPFVERLRWMAEASMAVIAWGTCASWGCVQAARPNPTGTVPIDKVISNKPI-VKVPGCPP 138
Query: 162 TAEA 165
AEA
Sbjct: 139 IAEA 142
>gi|163782518|ref|ZP_02177515.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Hydrogenivirga sp.
128-5-R1-1]
gi|159882091|gb|EDP75598.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Hydrogenivirga sp.
128-5-R1-1]
Length = 252
Score = 38.4 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 27/102 (26%)
Query: 94 DVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----------YHYSY- 140
D+ V G++ T + A ++ V + + R ++++G+CA GG + Y
Sbjct: 50 DIAFVEGSVSTQEEAEFIKEVRE---KARLLVTIGACATSGGIQALRNFGSLEEFSSVYP 106
Query: 141 -----SVVR---GCDRIVPVDIYVPGCPPTA---EALIYGIL 171
V++ V VD + GCP E + +L
Sbjct: 107 KPEFIKVLKRSTPISEHVKVDYEIYGCPINPHILENFVKALL 148
>gi|602582|emb|CAA58176.1| F420-nonreducing hydrogenase [Methanosarcina mazei Go1]
gi|1093482|prf||2104206D NiFe hydrogenase:SUBUNIT=small
Length = 383
Score = 38.4 bits (88), Expect = 0.43, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 25/77 (32%)
Query: 113 VYDQMPEPRYVISMGSCANGGGY-----------------YHYSYSVVR-----GCDRIV 150
+ + ++++G+CA GG + + + G D+
Sbjct: 159 LGEAAENANAIVAVGACACWGGITSADSDIEKETDYRGVAFKKTDASKGMLKELGIDK-- 216
Query: 151 PVDIYVPGCPPTAEALI 167
PV I +PGCP + ++
Sbjct: 217 PV-INIPGCPAHPDWIL 232
>gi|20378784|gb|AAM20986.1| hydrogenase small subunit [Rhizobium tropici]
Length = 189
Score = 38.4 bits (88), Expect = 0.44, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ VI+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 80 RPFVEKLKWMAEGALAVIAWGTCASSGCVQAATPNPTEATPIDKVIRDKPI-IKVPGCPP 138
Query: 162 TAE 164
AE
Sbjct: 139 IAE 141
>gi|21228271|ref|NP_634193.1| F420-nonreducing hydrogenase II [Methanosarcina mazei Go1]
gi|20906730|gb|AAM31865.1| F420-nonreducing hydrogenase II precursor [Methanosarcina mazei
Go1]
Length = 386
Score = 38.4 bits (88), Expect = 0.44, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 25/77 (32%)
Query: 113 VYDQMPEPRYVISMGSCANGGGY-----------------YHYSYSVVR-----GCDRIV 150
+ + ++++G+CA GG + + + G D+
Sbjct: 162 LGEAAENANAIVAVGACACWGGITSADSDIEKETDYRGVAFKKTDASKGMLKELGIDK-- 219
Query: 151 PVDIYVPGCPPTAEALI 167
PV I +PGCP + ++
Sbjct: 220 PV-INIPGCPAHPDWIL 235
>gi|257054866|ref|YP_003132698.1| Ni,Fe-hydrogenase I small subunit [Saccharomonospora viridis DSM
43017]
gi|256584738|gb|ACU95871.1| Ni,Fe-hydrogenase I small subunit [Saccharomonospora viridis DSM
43017]
Length = 350
Score = 38.4 bits (88), Expect = 0.44, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 111 RRVYDQMPEPRYVISMGSCANGGGYYHYSYS---VVRGCDRI---------VPVDIYVPG 158
R + + P+ V+++G+CA GG + + + + D + +PV I VPG
Sbjct: 121 RWIDELAPKAWAVVAIGTCATYGGIHAMAGNPTGCMGLVDYLGEDFRSAGGLPV-INVPG 179
Query: 159 CPPTAEALIYGIL 171
CP + + +L
Sbjct: 180 CPVQPDNFMETLL 192
>gi|144900805|emb|CAM77669.1| NADH ubiquinone oxidoreductase domain, 20 kDa subunit
[Magnetospirillum gryphiswaldense MSR-1]
Length = 258
Score = 38.4 bits (88), Expect = 0.44, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 23/88 (26%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135
DV +V G++T ++ + + + + +I++G+CA GG
Sbjct: 56 DVSLVEGSITTPHD--IKAIREVRKQSKLLITIGACATAGGIQALRNFKNVKEFIRTVYA 113
Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCP 160
Y + + VPVD + GCP
Sbjct: 114 HPEYIDTLTTSTAISDHVPVDFELRGCP 141
>gi|220904312|ref|YP_002479624.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|229463018|sp|P13061|PHNS_DESDA RecName: Full=Periplasmic [NiFe] hydrogenase small subunit;
AltName: Full=NiFe hydrogenlyase small chain; Flags:
Precursor
gi|219868611|gb|ACL48946.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 315
Score = 38.4 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 18/75 (24%)
Query: 117 MPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIY---------VPGCPPTAEA 165
+P+ + V+S+G+CA GG + + +G + D Y VPGCPP
Sbjct: 151 LPKAKAVVSIGTCACYGGIQAAKPNPTAAKGIN-----DCYADLGVKAINVPGCPPNPLN 205
Query: 166 LIYGILLLQK--KIR 178
++ ++ K KI
Sbjct: 206 MVGTLVAFLKGQKIE 220
>gi|78486377|ref|YP_392302.1| hydrogenase (NiFe) small subunit (hydA) [Thiomicrospira crunogena
XCL-2]
gi|78364663|gb|ABB42628.1| Ni,Fe-hydrogenase small subunit [Thiomicrospira crunogena XCL-2]
Length = 813
Score = 38.4 bits (88), Expect = 0.45, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 15/92 (16%)
Query: 95 VMIVAGTLTNKMASALRRVYDQ-----------MPEPRYVISMGSCANGGGYYHYSYSVV 143
++IV G + M R+ Q V+++GSCA GG + +
Sbjct: 606 ILIVEGAVPLGMGGNFLRIGPQGETGEALLKRVAQHASAVMAVGSCAFDGGVVAAAPNPT 665
Query: 144 R--GCDRIVPVD--IYVPGCPPTAEALIYGIL 171
G + D I +PGCP ++ +L
Sbjct: 666 GAVGVSEALGRDDIINLPGCPVNPINVVGTLL 697
>gi|152993238|ref|YP_001358959.1| Ni-Fe hydrogenase, small subunit [Sulfurovum sp. NBC37-1]
gi|151425099|dbj|BAF72602.1| Ni-Fe hydrogenase, small subunit [Sulfurovum sp. NBC37-1]
Length = 806
Score = 38.4 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 15/92 (16%)
Query: 95 VMIVAGTLTNKMASALRRVYDQ-----------MPEPRYVISMGSCANGGGYYHYSYSVV 143
++IV G + M R+ Q + V+++GSCA GG + +
Sbjct: 603 ILIVEGAVPLGMEGKFLRIGTQGETGAALLRRCAKDATLVMAVGSCAYDGGVVAAAPNPT 662
Query: 144 R--GCDRIV-PVDIY-VPGCPPTAEALIYGIL 171
G + D+ + GCP ++ +L
Sbjct: 663 GAVGVGEALGREDVINISGCPANPVNIVGTLL 694
>gi|218885375|ref|YP_002434696.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|130115|sp|P21853|PHNS_DESVM RecName: Full=Periplasmic [NiFe] hydrogenase small subunit;
AltName: Full=NiFe hydrogenlyase small chain; Flags:
Precursor
gi|4558286|pdb|1H2A|S Chain S, Single Crystals Of Hydrogenase From Desulfovibrio Vulgaris
gi|145093|gb|AAA23369.1| [NiFe] hydrogenase small subunit [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756329|gb|ACL07228.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 317
Score = 38.4 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVP---- 151
+ G + N L +P+ + VI+ G+CA GG + + +G + +
Sbjct: 135 IYGKVANHTM--LDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGV 192
Query: 152 VDIYVPGCPPTAEALIYGIL 171
I + GCPP L+ I+
Sbjct: 193 KAINIAGCPPNPYNLVGTIV 212
>gi|325294649|ref|YP_004281163.1| Coenzyme F420 hydrogenase [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065097|gb|ADY73104.1| Coenzyme F420 hydrogenase [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 247
Score = 38.4 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 13/95 (13%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY---------HYSYSVVR 144
+ V G L + L + + ++++G CA+ GG S+
Sbjct: 66 HIAFVEGALCIEDKRHLNLAKELAEKANIIVTVGGCASFGGVRRLSIGNQAPQPSHQSFI 125
Query: 145 GCDRI----VPVDIYVPGCPPTAEALIYGILLLQK 175
+ + +PGCPP L ++ L +
Sbjct: 126 PLTEVELLRPKIKYAIPGCPPNPSLLYNFMIALLE 160
>gi|77464063|ref|YP_353567.1| hydrogenase protein small subunit [Rhodobacter sphaeroides 2.4.1]
gi|77388481|gb|ABA79666.1| hydrogenase protein small subunit [Rhodobacter sphaeroides 2.4.1]
Length = 369
Score = 38.4 bits (88), Expect = 0.47, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS G+CA+ G + + R +++ P+ + VPGCPP
Sbjct: 138 KPFVEQLKMAAEHAKAIISWGACASYGCVQAAAPNPTRATPVHKVILDKPI-VKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|197118352|ref|YP_002138779.1| hydrogenase subunit gamma [Geobacter bemidjiensis Bem]
gi|197087712|gb|ACH38983.1| hydrogenase, gamma subunit, putative [Geobacter bemidjiensis Bem]
Length = 251
Score = 38.4 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 26/140 (18%)
Query: 59 TFGLACCAVEMMQASMPRYDLERFGF-APRASPRQSDVMIVAGTLTNKMASALRRVYDQM 117
L C E+ Q R+DL F D IV G ++ L ++
Sbjct: 18 QLTLLNCEDELAQV-AARFDLVSFPMAESVEGGAPFDAAIVEGAVSTP--GDLANLFRLR 74
Query: 118 PEPRYVISMGSCANGGGY-----------------YHYSYSVVR-----GCDRIVPVDIY 155
R ++++G+CA GG Y V V VD
Sbjct: 75 NSSRLLVALGTCAIFGGVAAMNNGVSTREELVAAVYGDGEKTVESFAPAPLTNFVSVDFS 134
Query: 156 VPGCPPTAEALIYGILLLQK 175
+ GCPP + ++ + L
Sbjct: 135 ITGCPPEKQEVMALLCALLN 154
>gi|349576|gb|AAA27409.1| hydrogenase small subunit [Thiocapsa roseopersicina]
Length = 360
Score = 38.4 bits (88), Expect = 0.48, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
L ++ + + VIS GSCA+ G + R ++ PV I VPGCPP
Sbjct: 138 RPFLEQLLEMADSCKAVISWGSCASWGCVQAARPNPTRATPVHEVIRDKPV-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
AE ++ G+L
Sbjct: 197 IAE-VMTGVLT 206
>gi|121535775|ref|ZP_01667577.1| hydrogenase (NiFe) small subunit HydA [Thermosinus carboxydivorans
Nor1]
gi|121305674|gb|EAX46614.1| hydrogenase (NiFe) small subunit HydA [Thermosinus carboxydivorans
Nor1]
Length = 366
Score = 38.4 bits (88), Expect = 0.49, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 113 VYDQMPEPRYVISMGSCANGGGYY------HYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
+ + +I GSCA GG S S+ +P+ + VPGCPP E
Sbjct: 144 LKEAAKGAAAIIEYGSCAAWGGIQAAKPNPTKSVSISDVLGSSIPI-VKVPGCPPIPE 200
>gi|213586452|ref|ZP_03368278.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213650391|ref|ZP_03380444.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 330
Score = 38.4 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---IYVPGCPPT 162
L ++ + + +I+ GSCA+ G + + +++ D I VPGCPP
Sbjct: 102 PFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVHKLI-TDKTIIKVPGCPPI 160
Query: 163 AEALIYGILL 172
E ++ ++
Sbjct: 161 PE-VMSAVIT 169
>gi|169831803|ref|YP_001717785.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
Desulforudis audaxviator MP104C]
gi|169638647|gb|ACA60153.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
Desulforudis audaxviator MP104C]
Length = 317
Score = 38.4 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 43/92 (46%)
Query: 118 PEPRYVISMGSCANGGG----------------YYHYS--------------YSVVRGC- 146
+ + +++ GSCA GG Y S Y+V G
Sbjct: 82 KKSKVMVAFGSCAISGGIPGLANFKQKNDIFYRVYIESQSTQNPEKVYPQTHYAVPEGVL 141
Query: 147 ------------DRIVPVDIYVPGCPPTAEAL 166
+V VD ++PGCPPT+ +
Sbjct: 142 ELPEFYKEVKSLSDVVDVDYFMPGCPPTSAQI 173
>gi|134099603|ref|YP_001105264.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Saccharopolyspora
erythraea NRRL 2338]
gi|291005491|ref|ZP_06563464.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Saccharopolyspora
erythraea NRRL 2338]
gi|133912226|emb|CAM02339.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Saccharopolyspora
erythraea NRRL 2338]
Length = 346
Score = 38.4 bits (88), Expect = 0.50, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 118 PEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVD---------IYVPGCPPTAEAL 166
P+ V++ G+CA GG + + + G + D + VPGCP +
Sbjct: 124 PKAWAVVAAGTCATYGGIHAMAGNPTGCMGLADYLGPDFRTAGGLPIVNVPGCPVQPDNF 183
Query: 167 IYGIL 171
+ +L
Sbjct: 184 METLL 188
>gi|14719750|pdb|1E3D|A Chain A, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
gi|14719752|pdb|1E3D|C Chain C, [nife] Hydrogenase From Desulfovibrio Desulfuricans Atcc
27774
gi|7239221|gb|AAF43137.1|AF216303_1 [NiFe] hydrogenase small subunit [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 266
Score = 38.1 bits (87), Expect = 0.51, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 18/75 (24%)
Query: 117 MPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDIY---------VPGCPPTAEA 165
+P+ + V+S+G+CA GG + + +G + D Y VPGCPP
Sbjct: 102 LPKAKAVVSIGTCACYGGIQAAKPNPTAAKGIN-----DCYADLGVKAINVPGCPPNPLN 156
Query: 166 LIYGILLLQK--KIR 178
++ ++ K KI
Sbjct: 157 MVGTLVAFLKGQKIE 171
>gi|121536060|ref|ZP_01667845.1| hydrogenase (NiFe) small subunit HydA [Thermosinus carboxydivorans
Nor1]
gi|121305356|gb|EAX46313.1| hydrogenase (NiFe) small subunit HydA [Thermosinus carboxydivorans
Nor1]
Length = 362
Score = 38.1 bits (87), Expect = 0.52, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD--IYVPGCPPT 162
+ ++ +I +G+CA GG + R ++ I VPGCPP
Sbjct: 138 KPIVEKLRATAAGAAAIIEVGTCAAWGGIQTAKPNPTRSVAVSDVIKGKTIIKVPGCPPM 197
Query: 163 AEAL 166
E +
Sbjct: 198 PETI 201
>gi|599898|emb|CAA58113.1| F420-nonreducing hydrogenase I [Methanosarcina mazei Go1]
gi|1093479|prf||2104206A NiFe hydrogenase
Length = 383
Score = 38.1 bits (87), Expect = 0.52, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 25/77 (32%)
Query: 113 VYDQMPEPRYVISMGSCANGGGY-----------------YHYSYSVVR-----GCDRIV 150
+ + ++++G+CA GG + + + G D+
Sbjct: 159 LGEAAKNANAIVAVGACACWGGITSADSDIEKDTDYRGVAFKKTDASKGMLKELGIDK-- 216
Query: 151 PVDIYVPGCPPTAEALI 167
PV I +PGCP + ++
Sbjct: 217 PV-INIPGCPCHPDWVL 232
>gi|21228416|ref|NP_634338.1| F420-nonreducing hydrogenase I [Methanosarcina mazei Go1]
gi|20906892|gb|AAM32010.1| F420-nonreducing hydrogenase I precursor [Methanosarcina mazei Go1]
Length = 386
Score = 38.1 bits (87), Expect = 0.52, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 25/77 (32%)
Query: 113 VYDQMPEPRYVISMGSCANGGGY-----------------YHYSYSVVR-----GCDRIV 150
+ + ++++G+CA GG + + + G D+
Sbjct: 162 LGEAAKNANAIVAVGACACWGGITSADSDIEKDTDYRGVAFKKTDASKGMLKELGIDK-- 219
Query: 151 PVDIYVPGCPPTAEALI 167
PV I +PGCP + ++
Sbjct: 220 PV-INIPGCPCHPDWVL 235
>gi|226942597|ref|YP_002797670.1| soluble hydrogenase subunit delta, HoxY [Azotobacter vinelandii DJ]
gi|226717524|gb|ACO76695.1| soluble hydrogenase delta subunit, HoxY [Azotobacter vinelandii DJ]
Length = 256
Score = 38.1 bits (87), Expect = 0.52, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 23/88 (26%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135
D+ +V G++T A R+ + + + ++++G+CA GG
Sbjct: 54 DLSLVEGSVT--TAHDAERIREVRRQSKLLVTIGACATAGGIQALRNFADVNDYLAVVYA 111
Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCP 160
Y + + VPVD + GCP
Sbjct: 112 SPRYIETLATSTPIAAHVPVDFELRGCP 139
>gi|284050507|ref|ZP_06380717.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Arthrospira
platensis str. Paraca]
Length = 182
Score = 38.1 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 36/118 (30%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG--------- 133
G + P DV +V G + N+ L + + +IS G CA
Sbjct: 43 GCDLKEYPENVDVCLVEGGIANE--DNLELIKQVRSRTKLLISFGDCAVTANVPAMRNML 100
Query: 134 -------------------------GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
G V +V VDI++PGCPP+A+ +
Sbjct: 101 GSTDHVLKRCYLELGDFTPQLPREPGIVPELLERVSPVHEVVDVDIFMPGCPPSADRI 158
>gi|213161500|ref|ZP_03347210.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 239
Score = 38.1 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---IYVPGCPPT 162
L ++ + + +I+ GSCA+ G + + +++ D I VPGCPP
Sbjct: 11 PFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVHKLI-TDKTIIKVPGCPPI 69
Query: 163 AEALIYGILL 172
E ++ ++
Sbjct: 70 PE-VMSAVIT 78
>gi|6730442|pdb|1H2R|S Chain S, Three-Dimensional Structure Of Ni-Fe Hydrogenase From
Desulfivibrio Vulgaris Miyazaki F In The Reduced Form At
1.4 A Resolution
gi|30750149|pdb|1UBH|S Chain S, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750151|pdb|1UBJ|S Chain S, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750153|pdb|1UBK|S Chain S, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750155|pdb|1UBL|S Chain S, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750157|pdb|1UBM|S Chain S, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750159|pdb|1UBO|S Chain S, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750161|pdb|1UBR|S Chain S, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750163|pdb|1UBT|S Chain S, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|30750165|pdb|1UBU|S Chain S, Three-Dimensional Structure Of The Carbon Monoxide Complex
Of [nife]hydrogenase From Desulufovibrio Vulgaris
Miyazaki F
gi|85543886|pdb|1WUH|S Chain S, Three-Dimensional Structure Of The Ni-A State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
gi|85543888|pdb|1WUI|S Chain S, Ultra-High Resolution Structure Of The Ni-A State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
gi|85543890|pdb|1WUJ|S Chain S, Three-Dimensional Structure Of The Ni-B State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
gi|85543892|pdb|1WUK|S Chain S, High Resolution Structure Of The Oxidized State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
gi|85543894|pdb|1WUL|S Chain S, High Resolution Structure Of The Reduced State Of
[nife]hydrogenase From Desulufovibrio Vulgaris Miyazaki
F
Length = 267
Score = 38.1 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVP---- 151
+ G + N L +P+ + VI+ G+CA GG + + +G + +
Sbjct: 85 IYGKVANHTM--LDICSRILPKAQAVIAYGTCATFGGVQAAKPNPTGAKGVNDALKHLGV 142
Query: 152 VDIYVPGCPPTAEALIYGIL 171
I + GCPP L+ I+
Sbjct: 143 KAINIAGCPPNPYNLVGTIV 162
>gi|307151549|ref|YP_003886933.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
7822]
gi|306981777|gb|ADN13658.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
7822]
Length = 320
Score = 38.1 bits (87), Expect = 0.54, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRI------------ 149
M L + +V+++G CA GG + S +G +
Sbjct: 91 RPMKDWLLELSKVAS---FVVAVGDCATYGGIPAMAPNPSESQGLQFLKRKKGGFLGEDF 147
Query: 150 -----VPVDIYVPGCPPTAEAL 166
+PV I +PGCP + +
Sbjct: 148 RSKAGLPV-INIPGCPAHPDWI 168
>gi|317970220|ref|ZP_07971610.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Synechococcus sp.
CB0205]
Length = 186
Score = 38.1 bits (87), Expect = 0.55, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 38/128 (29%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G + P+ D+ +V G + N+ L + + ++S G CA ++
Sbjct: 47 GSDQKLYPKNVDIALVEGGVANE--DNLELLLQVRANSQILVSFGDCAITANV-PGMRNM 103
Query: 143 VRG-----------------------------CDRIVPVD------IYVPGCPPTAEALI 167
++G DR++PV +++PGCPP+A +
Sbjct: 104 LQGADPVLRRGYLDLADSSAQRPHAPGLIPELLDRVLPVHELVAVEMFLPGCPPSATQIR 163
Query: 168 YGILLLQK 175
+ L +
Sbjct: 164 SALEALLQ 171
>gi|24114305|ref|NP_708815.1| hydrogenase 2 small subunit [Shigella flexneri 2a str. 301]
gi|30064352|ref|NP_838523.1| hydrogenase 2 small subunit [Shigella flexneri 2a str. 2457T]
gi|24053462|gb|AAN44522.1| putative hydrogenase subunit [Shigella flexneri 2a str. 301]
gi|30042609|gb|AAP18333.1| putative hydrogenase subunit [Shigella flexneri 2a str. 2457T]
gi|281602388|gb|ADA75372.1| putative hydrogenase subunit [Shigella flexneri 2002017]
gi|332752674|gb|EGJ83059.1| uptake hydrogenase small subunit [Shigella flexneri K-671]
gi|332753059|gb|EGJ83443.1| uptake hydrogenase small subunit [Shigella flexneri 4343-70]
gi|332754559|gb|EGJ84925.1| uptake hydrogenase small subunit [Shigella flexneri 2747-71]
gi|332765480|gb|EGJ95698.1| uptake hydrogenase small subunit [Shigella flexneri 2930-71]
gi|333000115|gb|EGK19698.1| uptake hydrogenase small subunit [Shigella flexneri K-218]
gi|333014912|gb|EGK34257.1| uptake hydrogenase small subunit [Shigella flexneri K-304]
Length = 372
Score = 38.1 bits (87), Expect = 0.56, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD--RIVP--VDIYVPGCPPTA 163
+ + +I++GSC+ GG + ++P I +PGCPP
Sbjct: 136 PIVDHIRKAAEGSAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNP 195
>gi|218244987|ref|YP_002370358.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
8801]
gi|257058011|ref|YP_003135899.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
8802]
gi|218165465|gb|ACK64202.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
8801]
gi|256588177|gb|ACU99063.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
8802]
Length = 181
Score = 38.1 bits (87), Expect = 0.56, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 43/124 (34%)
Query: 72 ASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
P D++ + P D+ +V G + N+ L Y + ++V+S G CA
Sbjct: 38 VYSPIADIKEY-------PDGVDICLVEGGIANE--ENLELAYKIREKTKFVVSFGDCAV 88
Query: 132 GGGY-------------YHYSY---------------------SVVRGCDRIVPVDIYVP 157
SY V ++ VD+++P
Sbjct: 89 TANVPAMRNMLGPAETVLKRSYLELSDITPQLPHEPGIVPELLDRVSPLHEVITVDLFIP 148
Query: 158 GCPP 161
GCPP
Sbjct: 149 GCPP 152
>gi|188587809|ref|YP_001920983.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum E3 str.
Alaska E43]
gi|188498090|gb|ACD51226.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum E3 str.
Alaska E43]
Length = 313
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC---DRIVPVDIY-VPGCPPTA 163
A+ V + +Y+IS+G+CA GG +V + + ++ DI +PGCP
Sbjct: 143 AMELVKQAAQKAKYIISIGTCACYGGPTAAMPNVSQALSVKEYLMRNDIINIPGCPANP 201
>gi|150017854|ref|YP_001310108.1| hydrogenase (NiFe) small subunit HydA [Clostridium beijerinckii
NCIMB 8052]
gi|149904319|gb|ABR35152.1| hydrogenase (NiFe) small subunit HydA [Clostridium beijerinckii
NCIMB 8052]
Length = 291
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYY------HYSYSVVRGCDRIVPVDIYVPGCPPT 162
AL + + +YV+++G+CA+ GG S SV +R V I +PGCP
Sbjct: 126 ALDAIQLAGGKAKYVVAVGTCASHGGISAAKPNPSESKSVQEVLNRQV---IKLPGCPCH 182
Query: 163 AEALIYGILLL 173
+ ++ + L
Sbjct: 183 PDWVVGTLAHL 193
>gi|332139743|ref|YP_004425481.1| Ni-Fe hydrogenase, small subunit [Alteromonas macleodii str. 'Deep
ecotype']
gi|327549765|gb|AEA96483.1| Ni-Fe hydrogenase, small subunit [Alteromonas macleodii str. 'Deep
ecotype']
Length = 332
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 37/153 (24%)
Query: 50 ARTGSLMWMTF-GLACCA-----VEMMQASMPRYD---LERFGFAPRASPRQSD------ 94
AR S++W+ F C +D L+ A+ Q++
Sbjct: 48 ARRPSVIWLPFQECTGCTEAILRSHAPTLESLIFDHISLDYQHTIMAAAGEQAEDARRAA 107
Query: 95 --------VMIVAGTL--------TNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
+++V G++ T S + + + + +I++G+CA+ GG
Sbjct: 108 MNAHKGQYLLLVDGSVPVGNPGYSTISGMSNVDMLRESAKDAAGIIAIGTCASFGGIPKA 167
Query: 139 SYSVVRGC--DRIV---PVDIYVPGCPPTAEAL 166
+ + I+ P+ + + GCPP A+
Sbjct: 168 NPNPTGAVAVSDIITDKPI-VNISGCPPLPIAI 199
>gi|226947049|ref|YP_002802122.1| Uptake hydrogenase small subunit , HoxK [Azotobacter vinelandii DJ]
gi|123750|sp|P21950|MBHS_AZOVI RecName: Full=Uptake hydrogenase small subunit; AltName:
Full=Hydrogenase subunit beta; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase small subunit; Flags: Precursor
gi|142311|gb|AAA82505.1| H2 uptake hydrogenase (hoxK) precursor [Azotobacter vinelandii]
gi|397997|gb|AAA19498.1| NiFe-hydrogenase subunit [Azotobacter vinelandii]
gi|226721976|gb|ACO81147.1| Uptake hydrogenase small subunit (Precursor), HoxK [Azotobacter
vinelandii DJ]
Length = 358
Score = 38.1 bits (87), Expect = 0.62, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + VI+ GSCA+ G + + +++ P+ + VPGCPP
Sbjct: 138 KPFIEQLRHVAKDAKAVIAWGSCASWGCVQAARPNPTQAVPIHKVITDKPI-VKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|313648115|gb|EFS12561.1| uptake hydrogenase small subunit [Shigella flexneri 2a str. 2457T]
Length = 344
Score = 38.1 bits (87), Expect = 0.63, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD--RIVP--VDIYVPGCPPTA 163
+ + +I++GSC+ GG + ++P I +PGCPP
Sbjct: 108 PIVDHIRKAAEGSAAIIAIGSCSAWGGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNP 167
>gi|118471434|ref|YP_887054.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Mycobacterium
smegmatis str. MC2 155]
gi|118172721|gb|ABK73617.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Mycobacterium
smegmatis str. MC2 155]
Length = 351
Score = 38.1 bits (87), Expect = 0.63, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPPTAEA 165
P+ V+++G+CA GG + + + G + D + VPGCP +
Sbjct: 131 TPKATAVVAVGTCATYGGIHAMAGNPTGAMGVPDYLGWDWKSKAGIPIVCVPGCPIHPDN 190
Query: 166 LIYGILLLQ 174
L + L
Sbjct: 191 LAETLTYLL 199
>gi|213423622|ref|ZP_03356602.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 175
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---IYVPGCPPT 162
L ++ + + +I+ GSCA+ G + + +++ D I VPGCPP
Sbjct: 58 PFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVHKLI-TDKTIIKVPGCPPI 116
Query: 163 AE 164
E
Sbjct: 117 PE 118
>gi|187779564|ref|ZP_02996037.1| hypothetical protein CLOSPO_03160 [Clostridium sporogenes ATCC
15579]
gi|187773189|gb|EDU36991.1| hypothetical protein CLOSPO_03160 [Clostridium sporogenes ATCC
15579]
Length = 306
Score = 38.1 bits (87), Expect = 0.65, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDI-YVPGCPPTAEA 165
AL V + +YV+++G+C++ GG + S + + ++ ++ +PGCP +
Sbjct: 141 ALEAVKMAGEKAKYVVTVGTCSSYGGISAAKPNPSGSKSVEAVINKEVIKLPGCPCHPDW 200
Query: 166 LIYGILLL 173
++ + L
Sbjct: 201 VVGTLAHL 208
>gi|332308829|ref|YP_004436679.1| hydrogenase (NiFe) small subunit HydA [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332176158|gb|AEE25411.1| hydrogenase (NiFe) small subunit HydA [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 332
Score = 38.1 bits (87), Expect = 0.66, Method: Composition-based stats.
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC--DRIV---PVDI 154
G T S + + + E +I++G+CA+ GG + + I+ P+ +
Sbjct: 129 GYSTISGMSNVDMLRESAKEAAGIIAIGTCASFGGIPKANPNPTGAVAVSDIITDKPI-V 187
Query: 155 YVPGCPPTAEAL 166
+ GCPP A+
Sbjct: 188 NISGCPPLPIAI 199
>gi|73669353|ref|YP_305368.1| methanophenazine-reducing hydrogenase small subunit [Methanosarcina
barkeri str. Fusaro]
gi|72396515|gb|AAZ70788.1| methanophenazine-reducing hydrogenase, small subunit
[Methanosarcina barkeri str. Fusaro]
Length = 386
Score = 37.7 bits (86), Expect = 0.66, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 25/84 (29%)
Query: 106 MASALRRVYDQMPEPRYVISMGSCANGGGY-----------------YHYSYSVVR---- 144
+ + + VI++G+CA GG + S
Sbjct: 155 NKPFKQTLGEAAKNATAVIAVGACAAYGGITSADSDIAKDTDYRGVAFAKDDSSKGMLQE 214
Query: 145 -GCDRIVPVDIYVPGCPPTAEALI 167
G D+ PV I +PGCP + ++
Sbjct: 215 LGIDK--PV-INIPGCPAHPDWVL 235
>gi|108799111|ref|YP_639308.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Mycobacterium sp.
MCS]
gi|119868226|ref|YP_938178.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Mycobacterium sp.
KMS]
gi|126434717|ref|YP_001070408.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Mycobacterium sp.
JLS]
gi|108769530|gb|ABG08252.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Mycobacterium sp.
MCS]
gi|119694315|gb|ABL91388.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Mycobacterium sp.
KMS]
gi|126234517|gb|ABN97917.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Mycobacterium sp.
JLS]
Length = 351
Score = 37.7 bits (86), Expect = 0.67, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPPTAEA 165
P+ V+++G+CA GG + + + G + D + VPGCP +
Sbjct: 131 TPKATAVVAVGTCATYGGIHAMAGNPTGAMGVPDYLGWDWKSKAGIPIVCVPGCPIHPDN 190
Query: 166 LIYGILLLQ 174
L + L
Sbjct: 191 LAETLTYLL 199
>gi|163782641|ref|ZP_02177638.1| hydrogenase small subunit [Hydrogenivirga sp. 128-5-R1-1]
gi|159882214|gb|EDP75721.1| hydrogenase small subunit [Hydrogenivirga sp. 128-5-R1-1]
Length = 352
Score = 37.7 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV---PVDIYVPGCPP 161
L + + + +I+ GSCA+ G + + D+++ P+ I VPGCPP
Sbjct: 135 KPFLEHLKESAEGAKAIIAWGSCASWGCVQAAKPNPTTAVPVDKVITNKPI-IKVPGCPP 193
Query: 162 TAE 164
AE
Sbjct: 194 IAE 196
>gi|218886824|ref|YP_002436145.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757778|gb|ACL08677.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 322
Score = 37.7 bits (86), Expect = 0.70, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 123 VISMGSCANGGGYYHYSYSVVRGCD--------RIVPVDIYVPGCPPTAEALIYGILLLQ 174
VI+MGSCA+ GG + + R I P+++ PGCPP + ++ L
Sbjct: 156 VIAMGSCASYGGIQAAAPNPSRAIGVGAALKPLGIAPINL--PGCPPNPVNFVGTVVHLL 213
Query: 175 KK 176
K
Sbjct: 214 TK 215
>gi|83956303|ref|ZP_00964744.1| copper-translocating P-type ATPase [Sulfitobacter sp. NAS-14.1]
gi|83839524|gb|EAP78705.1| copper-translocating P-type ATPase [Sulfitobacter sp. NAS-14.1]
Length = 644
Score = 37.7 bits (86), Expect = 0.70, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
DL +PR ++++IV G L + A Y Q+P PR ++++G+
Sbjct: 43 DLSGSHLRLVGTPRHANLLIVVGPLPPGLRDAAAVTYAQIPRPRAILALGA 93
>gi|20378780|gb|AAM20984.1| hydrogenase small subunit [Azorhizobium sp. UPM1161]
Length = 169
Score = 37.7 bits (86), Expect = 0.72, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + +IS GSCA+ G + R ++ P+ I VPGCPP
Sbjct: 80 KPFVDQLKKVSKDAKAIISWGSCASYGCVQAARPNPTRATPVHEVIFDKPI-IKVPGCPP 138
Query: 162 TAE 164
+AE
Sbjct: 139 SAE 141
>gi|213621867|ref|ZP_03374650.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 219
Score = 37.7 bits (86), Expect = 0.72, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---IYVPGCPPT 162
L ++ + + +I+ GSCA+ G + + +++ D I VPGCPP
Sbjct: 102 PFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVHKLI-TDKTIIKVPGCPPI 160
Query: 163 AE 164
E
Sbjct: 161 PE 162
>gi|301060665|ref|ZP_07201489.1| putative Periplasmic [NiFe] hydrogenase small subunit [delta
proteobacterium NaphS2]
gi|300445233|gb|EFK09174.1| putative Periplasmic [NiFe] hydrogenase small subunit [delta
proteobacterium NaphS2]
Length = 245
Score = 37.7 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 113 VYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPV-DIYVPGCPPTAEALI 167
+ +P + +GSC++ GG + +G + + + +PGCPP L+
Sbjct: 76 AKEIVPSAAATVCIGSCSSFGGIQAAKPNPGGYKGVGDALGIKTVNIPGCPPNPINLV 133
>gi|153940080|ref|YP_001391096.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum F str.
Langeland]
gi|152935976|gb|ABS41474.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum F str.
Langeland]
gi|295319140|gb|ADF99517.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum F str.
230613]
Length = 290
Score = 37.7 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPVDI-YVPGCPPTAEA 165
AL + + RYV+++G+C++ GG + S + + ++ ++ +PGCP +
Sbjct: 125 ALEAIKMAGEKARYVVTVGTCSSYGGISAARPNPSGSKSVEAVINKEVIKLPGCPCHPDW 184
Query: 166 LIYGILLL 173
++ + L
Sbjct: 185 VVGTLAHL 192
>gi|116750375|ref|YP_847062.1| hydrogenase (NiFe) small subunit HydA [Syntrophobacter fumaroxidans
MPOB]
gi|116699439|gb|ABK18627.1| hydrogenase (NiFe) small subunit HydA [Syntrophobacter fumaroxidans
MPOB]
Length = 312
Score = 37.7 bits (86), Expect = 0.73, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG--CDRIVPVD-IYVPGCPPTAEAL 166
L + P+ I +G+CA+ GG + + + ++ + +PGCPP
Sbjct: 141 LEIAKEVCPKALATICIGTCASYGGLPAAAPNPTGAKSVKDAIGINTVNIPGCPPNPINF 200
Query: 167 I 167
I
Sbjct: 201 I 201
>gi|239989756|ref|ZP_04710420.1| Haloacid dehalogenase domain protein hydrolase [Streptomyces
roseosporus NRRL 11379]
Length = 214
Score = 37.7 bits (86), Expect = 0.76, Method: Composition-based stats.
Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 16/130 (12%)
Query: 5 TVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLAC 64
V++ G + S ++V + LV+ + + V W R L+ + LA
Sbjct: 45 AVSELDAKGWAGASEDQVSGWLDGLP--------LVSGITETVDWCRRNGLVPVLATLAW 96
Query: 65 CAVEMMQASMPRYDLERFGFAPRASPR-QSDVMIVAGTLTNKMASALRRVYDQMPEPRYV 123
+ +Y +RFGF PR ++D G + +R
Sbjct: 97 -------TPVGQYLADRFGFHAFGGPRLETDGDRFTGRVDRHFDEYDKRDVALAQARELG 149
Query: 124 ISMGSCANGG 133
++ +CA G
Sbjct: 150 VAPRACAAVG 159
>gi|218885378|ref|YP_002434699.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|165940633|gb|ABY75251.1| HysA [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218756332|gb|ACL07231.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 317
Score = 37.7 bits (86), Expect = 0.76, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 11/126 (8%)
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVA-GTLTNKMASALRRVYDQMPEPRYVI 124
A+E M +Y + F A P ++D G +K S + + V+
Sbjct: 91 AMEHMMKIAEQYKGKYFVVVEGAVPTEADGKYCIIGEAHHKEISMVDAMKSVAANAAAVL 150
Query: 125 SMGSCANGGGY--YHYSYSVVRGCDRIV-------PVDIYVPGCPPTAEALIYGILLLQK 175
++G+CA GG S + + + PV + +PGCPP + ++ +++
Sbjct: 151 AVGTCAAYGGIPAAQGSETGAKSVSQFFKDNGIATPV-VNIPGCPPHPDWIVGTVVVALN 209
Query: 176 KIRRVG 181
I+ G
Sbjct: 210 AIKAKG 215
>gi|20378774|gb|AAM20981.1| hydrogenase small subunit [Bradyrhizobium sp. UPM1171]
Length = 172
Score = 37.7 bits (86), Expect = 0.76, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ E +I+ G+CA+ G + D+++ P+ I VPGCPP
Sbjct: 70 KPFVEKLRWMAEEAMAIIAWGTCASWGCVQAAKPNPTGAVPIDKVITNKPI-IKVPGCPP 128
Query: 162 TAEALIYGILL 172
AE ++ G+L
Sbjct: 129 IAE-IMSGLLT 138
>gi|149204142|ref|ZP_01881110.1| hydrogenase protein small subunit [Roseovarius sp. TM1035]
gi|149142584|gb|EDM30629.1| hydrogenase protein small subunit [Roseovarius sp. TM1035]
Length = 368
Score = 37.7 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + +IS G+CA+ G + + +++ P+ I VPGCPP
Sbjct: 138 KPFVEKLRHAAKDAKAIISWGACASYGCVQAAKPNPTQATPVHKVITDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|115523250|ref|YP_780161.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris BisA53]
gi|115517197|gb|ABJ05181.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodopseudomonas
palustris BisA53]
Length = 333
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 20/84 (23%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV-------VRGCD------------RI 149
L + P V+++GSCA GG ++ +G +
Sbjct: 97 MLHWIEQLAPHAEMVVAVGSCAAFGGVPMAGHNPTDASGLQFQGVEPGGVLGASFRSRAG 156
Query: 150 VPVDIYVPGCPPTAEALIYGILLL 173
+PV I + GC P + + + L
Sbjct: 157 LPV-INIAGCAPHPDWIAQTLAAL 179
>gi|119385819|ref|YP_916874.1| hydrogenase (NiFe) small subunit HydA [Paracoccus denitrificans
PD1222]
gi|119376414|gb|ABL71178.1| hydrogenase (NiFe) small subunit HydA [Paracoccus denitrificans
PD1222]
Length = 361
Score = 37.7 bits (86), Expect = 0.78, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + +IS G+CA+ G + + R +++ P+ I VPGCPP
Sbjct: 138 KPFVEKLRHAARDAKAIISWGACASYGCVQAAAPNPTRATPVHKVILDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|315504986|ref|YP_004083873.1| hypothetical protein ML5_4220 [Micromonospora sp. L5]
gi|315411605|gb|ADU09722.1| hypothetical protein ML5_4220 [Micromonospora sp. L5]
Length = 532
Score = 37.7 bits (86), Expect = 0.79, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
G+ SP ++D++ V G +++A L R+++QMP PR I + S
Sbjct: 40 GWRLALSPAEADILAVCGPPPSQLAEPLHRLWEQMPGPRARIDVES 85
>gi|329912140|ref|ZP_08275697.1| NAD-reducing hydrogenase subunit HoxY [Oxalobacteraceae bacterium
IMCC9480]
gi|327545686|gb|EGF30833.1| NAD-reducing hydrogenase subunit HoxY [Oxalobacteraceae bacterium
IMCC9480]
Length = 211
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 36/82 (43%)
Query: 122 YVISMGSCANGGGY----------------YHYSYSVVRGCDRIVP-------------- 151
+IS+G+CA GG Y S +VV G I+P
Sbjct: 108 ILISVGACAVWGGVPSMRNQLPLADCLEEAYIKSPTVVAGIIPIIPNHPDLTRVTTKVYP 167
Query: 152 ------VDIYVPGCPPTAEALI 167
+D ++PGCPP +A+
Sbjct: 168 CHEVVKMDYFIPGCPPDGDAIF 189
>gi|310825686|ref|YP_003958043.1| putative L-iditol 2-dehydrogenase [Eubacterium limosum KIST612]
gi|308737420|gb|ADO35080.1| putative L-iditol 2-dehydrogenase [Eubacterium limosum KIST612]
Length = 350
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA------SPRQSDVMIVAGTLTNKMAS 108
++ C D + +G S ++S+++ V ++ + A+
Sbjct: 81 VVPPLIPCGKCEWCQKGIYSLCEDYDYYGSRRDGALAEYVSVKESNLLKVPEGVSYEDAA 140
Query: 109 ALR---RVYDQMPEPRYVISMGSCANGGGY---YHYSYSVVRGCDRIVPVDIY 155
L Y + + C G G + Y+ + G +++ VD++
Sbjct: 141 TLDPCANAYHGLMRGGFKEGDSVCVCGTGPIGLFAAQYAKLCGASQVIAVDVW 193
>gi|153003399|ref|YP_001377724.1| hydrogenase (NiFe) small subunit HydA [Anaeromyxobacter sp.
Fw109-5]
gi|152026972|gb|ABS24740.1| hydrogenase (NiFe) small subunit HydA [Anaeromyxobacter sp.
Fw109-5]
Length = 393
Score = 37.7 bits (86), Expect = 0.80, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVPV--DIYVPGCPPT 162
A+ + + + VI++GSCA+ GG + + G +++ + +PGCP
Sbjct: 156 KKAVDTLSEVAAKAGAVIAIGSCASWGGIPSAEPNPTGATGVPQLLKGKSVVTLPGCPAN 215
Query: 163 AEALIYGILL 172
L+ +L
Sbjct: 216 PYNLLGTVLQ 225
>gi|317486279|ref|ZP_07945111.1| hydrogenase small subunit [Bilophila wadsworthia 3_1_6]
gi|316922449|gb|EFV43703.1| hydrogenase small subunit [Bilophila wadsworthia 3_1_6]
Length = 316
Score = 37.7 bits (86), Expect = 0.82, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD-------RIV 150
V G + + + V++ G+C++ GG + R +
Sbjct: 124 VVGEVDHHEYTVAETTDILARSAAAVVAAGTCSSYGGVPAARGQQTQAVSVSRFLKMRGI 183
Query: 151 PVDIY-VPGCPPTAEALIYGILLLQKKIRRVGN 182
P + VPGCPP + ++ + LL ++R G
Sbjct: 184 PTPVINVPGCPPHPDWMVGTLALLLDAMKRKGT 216
>gi|313672063|ref|YP_004050174.1| hydrogenase (nife) small subunit hyda [Calditerrivibrio
nitroreducens DSM 19672]
gi|312938819|gb|ADR18011.1| hydrogenase (NiFe) small subunit HydA [Calditerrivibrio
nitroreducens DSM 19672]
Length = 367
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVP--VDIYV 156
T +AL + + +VI++G+CA GG + + + +G I+P I +
Sbjct: 129 YCTIGGKTALDILKEAGEGAAFVIAVGTCAAYGGLPAAYPNPTGAKGVKDILPHKTVINL 188
Query: 157 PGCP 160
PGCP
Sbjct: 189 PGCP 192
>gi|78357180|ref|YP_388629.1| hydrogenase (NiFe) small subunit (hydA) [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78219585|gb|ABB38934.1| hydrogenase (NiFe) small subunit (hydA) [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 317
Score = 37.7 bits (86), Expect = 0.84, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPV----DIYVPGCPPT 162
L D +P + VI+ G+CA GG + + G + + + + GCPP
Sbjct: 144 MLDICSDILPRAKAVIAYGTCATFGGVQAAAPNPTGAKGINDALAELGVNAVNISGCPPN 203
Query: 163 AEALIYGIL 171
L+ I+
Sbjct: 204 PFNLVGTIV 212
>gi|242399497|ref|YP_002994922.1| NiFe hydrogenase II, subunit delta [Thermococcus sibiricus MM 739]
gi|242265891|gb|ACS90573.1| NiFe hydrogenase II, subunit delta [Thermococcus sibiricus MM 739]
Length = 246
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 29/145 (20%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQS-------DVMIVAGTLTNKMASALRRV 113
CA+ ++ +DL F S D+ IV G+++ + L +
Sbjct: 12 DCGGCALNILFLYEKLFDLLEFYEIKEFHMASSFKEHDTLDIAIVTGSVSTQ--RDLDLL 69
Query: 114 YDQMPEPRYVISMGSCANGGGY-----------YHYSYSVVR---------GCDRIVPVD 153
+ Y+I++G+CA G Y + V VD
Sbjct: 70 HYARNHSNYLIALGTCATHGDVQASVEGKIRDKLEKVYGTKANPMKALDSTPIVQHVAVD 129
Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178
+PGCP + + ++ L K I
Sbjct: 130 YAMPGCPYDKDEIYQVLMNLAKGIE 154
>gi|240171480|ref|ZP_04750139.1| nickel/iron-hydrogenase I small subunit, HyaA [Mycobacterium
kansasii ATCC 12478]
Length = 351
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPPTAEAL 166
P+ V+++G+CA GG + + + G + D + VPGCP + L
Sbjct: 132 PKATAVVAVGTCATYGGIHAMAGNPTGAMGVPDYLGWDWKSKAGIPIVCVPGCPIHPDNL 191
Query: 167 IYGILLLQ 174
+ L
Sbjct: 192 AETLTYLL 199
>gi|258404403|ref|YP_003197145.1| hydrogenase (NiFe) small subunit HydA [Desulfohalobium retbaense
DSM 5692]
gi|257796630|gb|ACV67567.1| periplasmic [NiFe] hydrogenase, small subunit [Desulfohalobium
retbaense DSM 5692]
Length = 317
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 115 DQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV------PVDIYVPGCPPTA 163
D P+ + VI++G+CA GG + + +G + PV+ V GCPP
Sbjct: 150 DIAPKAKAVIAIGNCACFGGVQAAKPNPTEAKGVKAALGHLGVNPVN--VSGCPPNP 204
>gi|298492323|ref|YP_003722500.1| NADH ubiquinone oxidoreductase 20 kDa subunit ['Nostoc azollae'
0708]
gi|298234241|gb|ADI65377.1| NADH ubiquinone oxidoreductase 20 kDa subunit ['Nostoc azollae'
0708]
Length = 320
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV---------------VRGCDR 148
M L + +++++G CA GG S + G D
Sbjct: 91 RPMKDWLIDLSQAAK---FIVAVGDCATWGGIPAMSPNPSDSKGLQFLKRKEGGFLGKDF 147
Query: 149 I----VPVDIYVPGCPPTAEAL 166
+ +PV I +PGCP + +
Sbjct: 148 VSKAGLPV-INIPGCPTHPDWI 168
>gi|148253506|ref|YP_001238091.1| uptake hydrogenase accessory [Bradyrhizobium sp. BTAi1]
gi|146405679|gb|ABQ34185.1| uptake hydrogenase accessory [Bradyrhizobium sp. BTAi1]
Length = 338
Score = 37.7 bits (86), Expect = 0.85, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 24/82 (29%)
Query: 113 VYDQMPEPRYVISMGSCANGGGY--------------YHYSYSVVRGC-------DRIVP 151
+ D P YV+++GSCA GG + S V G R +P
Sbjct: 105 LLDLAPLADYVVAVGSCAAYGGIPAAGINPTDAVGLQFEGSD--VGGALGAGFRSKRGLP 162
Query: 152 VDIYVPGCPPTAEALIYGILLL 173
V I V GC P ++ +L L
Sbjct: 163 V-INVAGCAPHPGWIMESLLAL 183
>gi|221639926|ref|YP_002526188.1| Uptake hydrogenase [Rhodobacter sphaeroides KD131]
gi|332558938|ref|ZP_08413260.1| hydrogenase small subunit [Rhodobacter sphaeroides WS8N]
gi|221160707|gb|ACM01687.1| Uptake hydrogenase [Rhodobacter sphaeroides KD131]
gi|332276650|gb|EGJ21965.1| hydrogenase small subunit [Rhodobacter sphaeroides WS8N]
Length = 369
Score = 37.3 bits (85), Expect = 0.87, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS G+CA+ G + + R +++ P+ I VPGCPP
Sbjct: 138 KPFVEQLKMAAEHAKAIISWGACASYGCVQAAAPNPTRATPVHKVILDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|218438788|ref|YP_002377117.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
7424]
gi|218171516|gb|ACK70249.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
7424]
Length = 320
Score = 37.3 bits (85), Expect = 0.87, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGC------------DRI 149
M L+ + + +V+++G CA GG + S G D
Sbjct: 91 RAMKDWLQELAEVA---NFVVAVGDCATYGGIPAMAPNPSQSTGLQFLKRKKGGFLGDEF 147
Query: 150 -----VPVDIYVPGCPPTAEAL 166
+PV I +PGCP + +
Sbjct: 148 RSKAGLPV-INIPGCPAHPDWI 168
>gi|126462907|ref|YP_001044021.1| hydrogenase (NiFe) small subunit HydA [Rhodobacter sphaeroides ATCC
17029]
gi|126104571|gb|ABN77249.1| hydrogenase (NiFe) small subunit HydA [Rhodobacter sphaeroides ATCC
17029]
Length = 369
Score = 37.3 bits (85), Expect = 0.87, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS G+CA+ G + + R +++ P+ I VPGCPP
Sbjct: 138 KPFVEQLKMAAEHAKAIISWGACASYGCVQAAAPNPTRATPVHKVILDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|220934443|ref|YP_002513342.1| Hydrogenase (acceptor) [Thioalkalivibrio sp. HL-EbGR7]
gi|219995753|gb|ACL72355.1| Hydrogenase (acceptor) [Thioalkalivibrio sp. HL-EbGR7]
Length = 355
Score = 37.3 bits (85), Expect = 0.89, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 123 VISMGSCANGGGYYHYSYSVVRG--CDRIV---PVDIYVPGCPPTAE 164
+IS+G+CA GG + I+ PV I VPGCPP E
Sbjct: 157 LISVGTCAAYGGLPKAHPNPTGAAAVTDIIKDKPV-INVPGCPPIPE 202
>gi|3378679|emb|CAA74586.1| uptake hydrogenase [Rhodobacter sphaeroides]
Length = 369
Score = 37.3 bits (85), Expect = 0.89, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS G+CA+ G + + R +++ P+ I VPGCPP
Sbjct: 138 KPFVEQLKMAAEHAKAIISWGACASYGCVQAAAPNPTRATPVHKVILDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|213855259|ref|ZP_03383499.1| uptake hydrogenase small subunit [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 310
Score = 37.3 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---IYVPGCPPT 162
L ++ + + +I+ GSCA+ G + + +++ D I VPGCPP
Sbjct: 102 PFLEKLKRVSADAKAIIAWGSCASWGCVQAARPNPTKATPVHKLI-TDKTIIKVPGCPPI 160
Query: 163 AE 164
E
Sbjct: 161 PE 162
>gi|15606077|ref|NP_213454.1| hydrogenase small subunit [Aquifex aeolicus VF5]
gi|2983268|gb|AAC06862.1| hydrogenase small subunit [Aquifex aeolicus VF5]
Length = 353
Score = 37.3 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV---PVDIYVPGCPP 161
+ + + + VI+ GSCA+ G + + D+++ P+ I VPGCPP
Sbjct: 135 RPFVEILKESAEGAKAVIAWGSCASWGCVQAAKPNPTTAVPIDKVIKDKPI-IKVPGCPP 193
Query: 162 TAE 164
AE
Sbjct: 194 IAE 196
>gi|152978943|ref|YP_001344572.1| hydrogenase 2 small subunit [Actinobacillus succinogenes 130Z]
gi|150840666|gb|ABR74637.1| hydrogenase (NiFe) small subunit HydA [Actinobacillus succinogenes
130Z]
Length = 381
Score = 37.3 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR-----GCDRIVPVDIYVPGCPP 161
+ + + VI++GSC+ GG + G VPV I +PGCPP
Sbjct: 136 KPIIEHIKEAAKHAAAVIAIGSCSAWGGVPSSGGNPTGATSLSGVLPGVPV-INIPGCPP 194
Query: 162 TA 163
Sbjct: 195 NP 196
>gi|220934311|ref|YP_002513210.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995621|gb|ACL72223.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thioalkalivibrio sp.
HL-EbGR7]
Length = 262
Score = 37.3 bits (85), Expect = 0.91, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 29/133 (21%)
Query: 55 LMWMTFGLAC--CAVEMMQASMPRYDLERFGFAPRASPRQS----DVMIVAGTLTNKMAS 108
+ C ++ A + D R P AS + D+ +V G++T
Sbjct: 10 VWKFASCDGCQLTLLDCEDALLALADTIRIAHFPEASSARVEGPWDLSLVEGSITTP--E 67
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGY---------------------YHYSYSVVRGCD 147
R+ + R+++++G+CA GG + + +
Sbjct: 68 DAERIREIRRASRHLVTIGACATSGGIQALRNFADVEAFTRQVYARPDWIQTLATSDPIA 127
Query: 148 RIVPVDIYVPGCP 160
VPVD + GCP
Sbjct: 128 AHVPVDFELRGCP 140
>gi|222823449|ref|YP_002575023.1| quinone-reactive Ni/Fe-hydrogenase, small subunit [Campylobacter
lari RM2100]
gi|222538671|gb|ACM63772.1| quinone-reactive Ni/Fe-hydrogenase, small subunit [Campylobacter
lari RM2100]
Length = 544
Score = 37.3 bits (85), Expect = 0.91, Method: Composition-based stats.
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 123 VISMGSCANGGGYYHYSYSVVR--GCDRIVPVDIY-VPGCPPTAEALIYGI 170
+ +MG+C++ GG + + G +++ + +PGCPP+ +I +
Sbjct: 162 IFAMGTCSSFGGIQAAHPNPTKSIGISKVLEEKVINIPGCPPSDANIIAAL 212
>gi|256839915|ref|ZP_05545424.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738845|gb|EEU52170.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 339
Score = 37.3 bits (85), Expect = 0.92, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 110 LRRVYDQMPEPRYVISMGSCANG--GGYYHYSYSVVRGCDRIVPVDIY 155
LRR+YD+M E + + A G ++ +Y V + R PVD++
Sbjct: 15 LRRLYDEMTELCQPMMTLAMAIAALGALFYIAYRVWQSLSRAEPVDVF 62
>gi|120403406|ref|YP_953235.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Mycobacterium
vanbaalenii PYR-1]
gi|119956224|gb|ABM13229.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Mycobacterium
vanbaalenii PYR-1]
Length = 351
Score = 37.3 bits (85), Expect = 0.92, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPPTAEAL 166
P+ V+++G+CA GG + + + G + D + VPGCP + L
Sbjct: 132 PKATAVVAVGTCATYGGIHAMAGNPTGAMGVPDYLGWDWKTKAGIPIVCVPGCPIHPDNL 191
Query: 167 IYGILLLQ 174
+ L
Sbjct: 192 AETLTYLL 199
>gi|167629563|ref|YP_001680062.1| uptake [ni/fe] hydrogenase small subunit [Heliobacterium
modesticaldum Ice1]
gi|167592303|gb|ABZ84051.1| uptake [ni/fe] hydrogenase small subunit [Heliobacterium
modesticaldum Ice1]
Length = 372
Score = 37.3 bits (85), Expect = 0.93, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTAE 164
+ + ++ + +I+ GSCA G + + I+ P+ I VPGCPP AE
Sbjct: 141 VEILKEEAKNAKAIIAWGSCAVNGCIAAANPNPSGSVPVQEIIKDKPI-INVPGCPPIAE 199
Query: 165 ALIYGILL 172
++ G++
Sbjct: 200 -VMAGVIT 206
>gi|54295303|ref|YP_127718.1| hypothetical protein lpl2388 [Legionella pneumophila str. Lens]
gi|53755135|emb|CAH16628.1| hypothetical protein lpl2388 [Legionella pneumophila str. Lens]
Length = 261
Score = 37.3 bits (85), Expect = 0.93, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 27/112 (24%)
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----YHYS-------Y 140
D+ V G+++ R++ +Y+I++G+CA GG + S Y
Sbjct: 51 VDIAFVEGSISTPDEEH--RIHKIRENSQYLITIGACATAGGIQALRNFADSGEWMASVY 108
Query: 141 S---------VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK----KIRR 179
+ V VD + GCP + ++ I L KI+R
Sbjct: 109 ASPNYIKTLTTSTAIAHHVKVDWELWGCPVNSGQILEAIRFLLSNATPKIKR 160
>gi|310825677|ref|YP_003958034.1| putative L-iditol 2-dehydrogenase [Eubacterium limosum KIST612]
gi|308737411|gb|ADO35071.1| putative L-iditol 2-dehydrogenase [Eubacterium limosum KIST612]
Length = 356
Score = 37.3 bits (85), Expect = 0.95, Method: Composition-based stats.
Identities = 16/113 (14%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 55 LMWMTFGLACCAVEMMQASMPRYDLERFGFAPRA------SPRQSDVMIVAGTLTNKMAS 108
++ C D + +G S ++S+++ V ++ + A+
Sbjct: 81 VVPPLIPCGECEWCQKGIYSLCEDYDYYGSRRDGALAEYVSVKESNLLKVPDKVSFEDAA 140
Query: 109 ALR---RVYDQMPEPRYVISMGSCANGGGY---YHYSYSVVRGCDRIVPVDIY 155
L Y + + C G G + Y+ + G +++ VD++
Sbjct: 141 TLDPCANAYHGLMRGNFKEGDSVCVVGTGPIGLFAAQYAKLYGASKVIAVDVW 193
>gi|27382053|ref|NP_773582.1| uptake hydrogenase [Bradyrhizobium japonicum USDA 110]
gi|123751|sp|P12635|MBHS_BRAJA RecName: Full=Uptake hydrogenase small subunit; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase small subunit; Flags: Precursor
gi|152101|gb|AAA26218.1| uptake hydrogenase (hupS) precursor [Bradyrhizobium japonicum]
gi|27355223|dbj|BAC52207.1| uptake hydrogenase precursor [Bradyrhizobium japonicum USDA 110]
Length = 363
Score = 37.3 bits (85), Expect = 0.96, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 139 KPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVITNKPI-IKVPGCPP 197
Query: 162 TAE 164
AE
Sbjct: 198 IAE 200
>gi|296271580|ref|YP_003654211.1| hydrogenase (NiFe) small subunit HydA [Arcobacter nitrofigilis DSM
7299]
gi|296095755|gb|ADG91705.1| hydrogenase (NiFe) small subunit HydA [Arcobacter nitrofigilis DSM
7299]
Length = 807
Score = 37.3 bits (85), Expect = 0.97, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGY---YHYSYSVVRGCDRIVPVDIY-VPGCPPTAEA 165
+ + + V+++GSCA GG Y V + D+ + GCP
Sbjct: 628 VELLKKCAKDAALVLAVGSCAFDGGVVSAYPNPTGAVGVAQALNRDDVINITGCPTNPIN 687
Query: 166 LIYGIL 171
++ +L
Sbjct: 688 IVGTLL 693
>gi|83376046|gb|ABC17827.1| HupS [Bradyrhizobium sp. UPM1029]
Length = 363
Score = 37.3 bits (85), Expect = 0.97, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 139 KPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVITNKPI-IKVPGCPP 197
Query: 162 TAE 164
AE
Sbjct: 198 IAE 200
>gi|315426446|dbj|BAJ48084.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Candidatus
Caldiarchaeum subterraneum]
gi|315426458|dbj|BAJ48091.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Candidatus
Caldiarchaeum subterraneum]
Length = 253
Score = 37.3 bits (85), Expect = 0.98, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 23/88 (26%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYSYS 141
D+ +V G++T +AL + + R +I++G+CA GG Y Y+
Sbjct: 54 DIALVEGSITTPHDAALIK--EVRKNSRILITIGACATAGGIQALRNWRGSAEFMKYVYA 111
Query: 142 VVR---------GCDRIVPVDIYVPGCP 160
VPVD + GCP
Sbjct: 112 RPEYIETLDKSTPVADHVPVDFELRGCP 139
>gi|257092372|ref|YP_003166013.1| ferredoxin hydrogenase small subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257044896|gb|ACV34084.1| ferredoxin hydrogenase, small subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 332
Score = 37.3 bits (85), Expect = 0.98, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 20/86 (23%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV---------------VRGCD---- 147
+ V + YV+++G+C+ GG +V + G D
Sbjct: 93 RPLIAWVRELAARAAYVLAIGTCSAYGGIVSGGENVTDACGLQFDGDQEGGLLGTDFRSG 152
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLL 173
+PV I V GCP ++ +L L
Sbjct: 153 AGLPV-INVAGCPTHPGWIVDTLLSL 177
>gi|20378776|gb|AAM20982.1| hydrogenase small subunit [Bradyrhizobium sp. UPM1172]
Length = 192
Score = 37.3 bits (85), Expect = 0.98, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ E +I+ G+CA+ G + D+++ P+ I VPGCPP
Sbjct: 80 KPFVEKLRSMAEESMAIIAWGTCASWGCVQAAKPNPTGAAPIDKVITNKPI-IKVPGCPP 138
Query: 162 TAEALIYGILL 172
AE ++ G++
Sbjct: 139 IAE-VMSGLVT 148
>gi|269128784|ref|YP_003302154.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora
curvata DSM 43183]
gi|268313742|gb|ACZ00117.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermomonospora
curvata DSM 43183]
Length = 352
Score = 37.3 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 12/73 (16%)
Query: 114 YDQMPEPRY-VISMGSCANGGGYYHY--SYSVVRGCDRIVPVD---------IYVPGCPP 161
D + + V+++G+CA GG + + + G + D + VPGCP
Sbjct: 126 IDALAPGAWAVVAIGTCATYGGIHAMAGNPTGCMGLADYLGWDFRSAGGLPIVNVPGCPV 185
Query: 162 TAEALIYGILLLQ 174
E + + L
Sbjct: 186 QPENFMETLTWLL 198
>gi|70957343|gb|AAZ16414.1| uptake hydrogenase small subunit [Anabaena siamensis TISTR 8012]
Length = 320
Score = 37.3 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV---------------VRGCDR 148
M L + +V+++G CA GG S + G D
Sbjct: 91 RPMKDWLNDLAKAAS---FVVAIGDCATWGGIPAMSPNPSESQGLQFLKRDKGGFLGADF 147
Query: 149 I----VPVDIYVPGCPPTAEAL 166
+ +PV I +PGCP + +
Sbjct: 148 VSKAGLPV-INIPGCPAHPDWI 168
>gi|299139673|ref|ZP_07032846.1| hydrogenase (NiFe) small subunit HydA [Acidobacterium sp. MP5ACTX8]
gi|298598297|gb|EFI54462.1| hydrogenase (NiFe) small subunit HydA [Acidobacterium sp. MP5ACTX8]
Length = 350
Score = 37.3 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 118 PEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVD---------IYVPGCPPTAEAL 166
P+ VI G+CA GG + + + G + D + VPGCP +
Sbjct: 130 PKALAVIGAGTCATYGGIHAMAGNPTGCMGLADYLGWDWRSKAGLPIVNVPGCPVQPDNF 189
Query: 167 IYGILLLQ 174
+ +L L
Sbjct: 190 METVLYLL 197
>gi|298529024|ref|ZP_07016427.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510460|gb|EFI34363.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfonatronospira
thiodismutans ASO3-1]
Length = 328
Score = 37.3 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 37/113 (32%), Gaps = 46/113 (40%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------YH 137
D+ V G + N +V Q + + +++ G+CA+ GG Y
Sbjct: 62 DLAFVDGMVRNTENEHTVKVLRQ--KSKTLVAFGACASLGGIAALGDMHSKKELFDQAYK 119
Query: 138 YSYSVVRG----------------------------CDRIVPVDIYVPGCPPT 162
++S D++V VD YV GCPP
Sbjct: 120 DTFSTDNPEGILPEPQCLWEGKYDLTLPAFTKRVSTIDQLVDVDYYVGGCPPH 172
>gi|187935390|ref|YP_001886201.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum B str.
Eklund 17B]
gi|187723543|gb|ACD24764.1| [Ni/Fe] hydrogenase, small subunit [Clostridium botulinum B str.
Eklund 17B]
Length = 313
Score = 37.3 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC---DRIVPVDIY-VPGCPPTA 163
A+ V + +Y+IS+G+CA GG +V + + ++ DI +PGCP
Sbjct: 143 AMELVKQAAQKAKYIISIGTCACYGGPTAAKPNVSQALSVKEYLMRNDIINIPGCPANP 201
>gi|16330686|ref|NP_441414.1| hydrogenase small subunit [Synechocystis sp. PCC 6803]
gi|1653178|dbj|BAA18094.1| hydrogenase small subunit [Synechocystis sp. PCC 6803]
gi|1771719|emb|CAA66211.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
Length = 182
Score = 37.3 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 143 VRGCDRIVPVDIYVPGCPP 161
V ++PVDI++PGCPP
Sbjct: 135 VIPLHEVIPVDIFMPGCPP 153
>gi|271965280|ref|YP_003339476.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Streptosporangium
roseum DSM 43021]
gi|270508455|gb|ACZ86733.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Streptosporangium
roseum DSM 43021]
Length = 358
Score = 36.9 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPPTAEAL 166
P+ V++ G+CA GG + + + G + D + VPGCP + L
Sbjct: 138 PKATAVLAAGTCATYGGIHAMAGNPTGAMGVADYLGWDWRSKAGLPIVNVPGCPIQPDNL 197
Query: 167 IYGILLLQ 174
IL L
Sbjct: 198 SETILYLL 205
>gi|126732737|ref|ZP_01748532.1| hydrogenase protein small subunit [Sagittula stellata E-37]
gi|126706733|gb|EBA05804.1| hydrogenase protein small subunit [Sagittula stellata E-37]
Length = 362
Score = 36.9 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS G+CA+ G + + R +++ P+ I VPGCPP
Sbjct: 138 KPFVEQLRHAAEHAKAIISWGACASYGCVQAAAPNPTRATPVHKVITDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|260429569|ref|ZP_05783546.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Citreicella sp.
SE45]
gi|260420192|gb|EEX13445.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Citreicella sp.
SE45]
Length = 329
Score = 36.9 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 28/86 (32%), Gaps = 20/86 (23%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD------------------- 147
L V P +V+++G+CA GG +
Sbjct: 92 RPMLDWVRALAPRAGHVVAVGTCAAYGGMTAAGGNPSGAVGLQYDGRSKGAALDEGFTSR 151
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLL 173
+PV I + GCP + +L+L
Sbjct: 152 SGLPV-INIAGCPTHPSWVTETLLML 176
>gi|89091971|ref|ZP_01164926.1| hypothetical protein MED92_07386 [Oceanospirillum sp. MED92]
gi|89083706|gb|EAR62923.1| hypothetical protein MED92_07386 [Oceanospirillum sp. MED92]
Length = 251
Score = 36.9 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 26/106 (24%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135
D+ +V G++ T K +RRV RY+ISMG+CA GG
Sbjct: 52 VDIALVEGSVVTAKDQQRIRRV---RSNSRYLISMGACATSGGIQALKNLADNPADWIGQ 108
Query: 136 ------YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK 175
+ S + V VD + GCP ++ + + L
Sbjct: 109 IYPQPEFIDSLDRSSAIKQYVEVDFELWGCPVSSLQVSEAVATLLN 154
>gi|220931231|ref|YP_002508139.1| hydrogenase (NiFe) small subunit HydA [Halothermothrix orenii H
168]
gi|219992541|gb|ACL69144.1| hydrogenase (NiFe) small subunit HydA [Halothermothrix orenii H
168]
Length = 334
Score = 36.9 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGC------DRIVPV 152
G +T +R + + Y +++G+CA+ GG S ++ DR +
Sbjct: 128 EGPVT--AVELVRWLGELAK---YAVAVGTCASFGGASAASPNITGSVALGDVLDRQI-- 180
Query: 153 DIYVPGCPPTAEALIYGILLLQ 174
I V GCP + + + LQ
Sbjct: 181 -INVSGCPINPDWFVGTLAHLQ 201
>gi|183981883|ref|YP_001850174.1| nickel/iron-hydrogenase I small subunit, HyaA [Mycobacterium
marinum M]
gi|183175209|gb|ACC40319.1| nickel/iron-hydrogenase I small subunit, HyaA [Mycobacterium
marinum M]
Length = 351
Score = 36.9 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 11/69 (15%)
Query: 117 MPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPPTAEA 165
P+ V+++G+CA GG + + + G + D + VPGCP +
Sbjct: 131 TPKATAVVAVGTCATYGGIHAMAGNPTGAMGVPDYLGWDWKSKAGIPIVCVPGCPIHPDN 190
Query: 166 LIYGILLLQ 174
L + L
Sbjct: 191 LSETLTYLL 199
>gi|154246116|ref|YP_001417074.1| hydrogenase (NiFe) small subunit HydA [Xanthobacter autotrophicus
Py2]
gi|154160201|gb|ABS67417.1| hydrogenase (NiFe) small subunit HydA [Xanthobacter autotrophicus
Py2]
Length = 370
Score = 36.9 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + +IS GSCA+ G + R ++ P+ I VPGCPP
Sbjct: 137 KPFVDQLKKVAKDAKAIISWGSCASYGCVQAARPNPTRATPVHEVIFDKPI-IKVPGCPP 195
Query: 162 TAE 164
AE
Sbjct: 196 IAE 198
>gi|94986882|ref|YP_594815.1| hydrogenase-1 small subunit [Lawsonia intracellularis PHE/MN1-00]
gi|94731131|emb|CAJ54493.1| hydrogenase-1 small subunit [Lawsonia intracellularis PHE/MN1-00]
Length = 418
Score = 36.9 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 101 TLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIY 155
+ L + VI G+CA+ G + R +++ P+ I
Sbjct: 133 ACFQEGRPFLETLKRGAEGASAVICWGTCASWGCVQAAHPNPTRATPVPKLIHDKPI-IR 191
Query: 156 VPGCPPTAE 164
+PGCPP E
Sbjct: 192 IPGCPPIPE 200
>gi|303256902|ref|ZP_07342916.1| nickel-iron hydrogenase, small subunit [Burkholderiales bacterium
1_1_47]
gi|330998848|ref|ZP_08322575.1| putative hydrogenase-2 small chain [Parasutterella
excrementihominis YIT 11859]
gi|302860393|gb|EFL83470.1| nickel-iron hydrogenase, small subunit [Burkholderiales bacterium
1_1_47]
gi|329576062|gb|EGG57581.1| putative hydrogenase-2 small chain [Parasutterella
excrementihominis YIT 11859]
Length = 366
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
L ++ + VI+ GSC++ G + + ++ P+ I VPGCPP
Sbjct: 136 KPFLEKLMHVAKGAKAVIAWGSCSSWGCINTAKPNPTKSVPITDVIKDKPI-IRVPGCPP 194
Query: 162 TAE 164
E
Sbjct: 195 IPE 197
>gi|86160579|ref|YP_467364.1| methyl-viologen-reducing hydrogenase subunit delta
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85777090|gb|ABC83927.1| Methyl-viologen-reducing hydrogenase, delta subunit
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 491
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 146 CDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
+V VD +PGCPP+ + + L
Sbjct: 318 LADVVSVDYTIPGCPPSPAVVQAALDALL 346
>gi|303239421|ref|ZP_07325948.1| hydrogenase (NiFe) small subunit HydA [Acetivibrio cellulolyticus
CD2]
gi|302592984|gb|EFL62705.1| hydrogenase (NiFe) small subunit HydA [Acetivibrio cellulolyticus
CD2]
Length = 299
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVP-VDIYVPGCPPTAEA 165
AL+ + + +VI++G+CA GG + + ++ I +PGCP +
Sbjct: 126 ALKAIKLLGEKASHVIALGACATHGGVSAAKPNPAACVSVQSVLKRKVIKLPGCPCHPDW 185
Query: 166 LI 167
+
Sbjct: 186 FL 187
>gi|291570288|dbj|BAI92560.1| hydrogenase subunit of the bidirectional hydrogenase [Arthrospira
platensis NIES-39]
Length = 182
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 36/114 (31%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG--------- 133
G + P DV +V G + N+ L + + +IS G CA
Sbjct: 43 GCDLKEYPENVDVCLVEGGIANE--DNLELIKQVRSRTKLLISFGDCAVTANVPAMRNML 100
Query: 134 -------------------------GYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
G V +V VDI++PGCPP+
Sbjct: 101 GSTDHVLKRCYLELGDFTPQLPREPGIVPELLERVSPVHEVVDVDIFMPGCPPS 154
>gi|144898862|emb|CAM75726.1| Ni,Fe-hydrogenase I small subunit [Magnetospirillum gryphiswaldense
MSR-1]
Length = 373
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 127 GSCANGGGYYHYSYSVVR--GCDRIV--PVDIYVPGCPPTAEALIYGIL 171
GSCA+ GG + G + + +PGCPP ++ I+
Sbjct: 161 GSCASWGGMPSTPPNPTGSTGVAEALGRKDVVTIPGCPPNPYNILATIV 209
>gi|25108902|sp|P18190|MBHS_AZOCH RecName: Full=Uptake hydrogenase small subunit; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase small subunit; Flags: Precursor
Length = 354
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---IYVPGCPP 161
L ++ + + VI+ GSCA+ G + + +++ D I VPGCPP
Sbjct: 134 KPFLDQLKHAAKDAKAVIAWGSCASWGCVQAAKPNPTQAVPIHKVI-TDKPMIKVPGCPP 192
Query: 162 TAE 164
AE
Sbjct: 193 IAE 195
>gi|323477024|gb|ADX82262.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Sulfolobus
islandicus HVE10/4]
Length = 326
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 24/95 (25%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCD-------------- 147
M +R + + YV+++G CA+ GG + + G
Sbjct: 92 RPMKDWVREIANV---SNYVVAVGDCASFGGIPASDPNPTESTGLQFHKKEKGGFLGKNF 148
Query: 148 ---RIVPVDIYVPGCPPTAEALIYGI-LLLQKKIR 178
+ +PV I + GCP E +I + L+L K+
Sbjct: 149 KTRKGLPV-INISGCPAHPEWIITTLSLILNGKLS 182
>gi|291446771|ref|ZP_06586161.1| LOW QUALITY PROTEIN: phosphotransferase [Streptomyces roseosporus
NRRL 15998]
gi|291349718|gb|EFE76622.1| LOW QUALITY PROTEIN: phosphotransferase [Streptomyces roseosporus
NRRL 15998]
Length = 155
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 39 LVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPR-QSDVMI 97
LV+ + + V W R L+ + LA + +Y +RFGF PR ++D
Sbjct: 12 LVSGITETVDWCRRNGLVPVLATLAW-------TPVGQYLADRFGFHAFGGPRLETDGDR 64
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG 133
G + +R ++ +CA G
Sbjct: 65 FTGRVDRHFDEYDKRDVALAQARELGVAPRACAAVG 100
>gi|89902615|ref|YP_525086.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
ferrireducens T118]
gi|89347352|gb|ABD71555.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
ferrireducens T118]
Length = 188
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 36/108 (33%)
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------YHYSY 140
D+ ++ G L N + R + + ++++G+CA GG Y
Sbjct: 60 CDIGLIEGGLCNAENVQVLREFRAHCKT--LVAVGACAITGGLPAQRNHLDLGQLLTEVY 117
Query: 141 ----------------------SVVRGCDRIVPVDIYVPGCPPTAEAL 166
+ V +V VD +PGCPP+A+A
Sbjct: 118 RSRPGLSAGGAIPNDPELPLLLNKVHPIREVVHVDYSLPGCPPSADAF 165
>gi|321453027|gb|EFX64308.1| hypothetical protein DAPPUDRAFT_66315 [Daphnia pulex]
Length = 360
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAE 164
+V + +GGG Y +V+ +PVDIY GC E
Sbjct: 165 FVSKCHTTHSGGGSYRE--YLVQNLSSFIPVDIY-GGCATKPE 204
>gi|46451415|gb|AAS97952.1| NiFe hydrogenase small subunit [Arthrospira maxima OUQDSM]
gi|46451417|gb|AAS97953.1| NiFe hydrogenase small subunit [Arthrospira platensis FACHBOUQDS6]
Length = 158
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 36/114 (31%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG--------- 133
G + P DV +V G + N+ L + + +IS G CA
Sbjct: 19 GCDLKEYPENVDVCLVEGGIANE--DNLELIKQVRSRTKLLISFGDCAVTANVPAMRNML 76
Query: 134 -------------------------GYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
G V +V VDI++PGCPP+
Sbjct: 77 GSTDHVLKRCYLELGDFTPQLPREPGIVPELLERVSPVHEVVDVDIFMPGCPPS 130
>gi|111221271|ref|YP_712065.1| [NiFe] uptake hydrogenase small subunit [Frankia alni ACN14a]
gi|111148803|emb|CAJ60481.1| [NiFe] uptake hydrogenase small subunit [Frankia alni ACN14a]
Length = 320
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 29/92 (31%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------------YHYSYS 141
M +R + Q + V+++G CA GG + S
Sbjct: 88 RPMQDWVRDLAGQA---QVVVAIGDCACWGGVPATAPNPTDSTGLQFHKRAPGGFLGSDF 144
Query: 142 VVRGCDRIVPVDIYVPGCPPTAEALIYGILLL 173
RG +PV I VPGCP + + ++ L
Sbjct: 145 RSRGG---LPV-INVPGCPAHPDWITQILVAL 172
>gi|38637729|ref|NP_942703.1| putative [NiFe] hydrogenase small subunit [Ralstonia eutropha H16]
gi|32527067|gb|AAP85817.1| putative [NiFe] hydrogenase small subunit [Ralstonia eutropha H16]
Length = 351
Score = 36.9 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 17/72 (23%)
Query: 118 PEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIV----------PVDIYVPGCPPTA-- 163
P+ V+ G+CA GG + + G + P+ + VPGCP
Sbjct: 134 PKALAVVGAGTCATYGGIHAMEGNPTGCMGLADYLGWQWKSRAGLPI-VNVPGCPVQPDN 192
Query: 164 --EALIYGILLL 173
E L+Y + L
Sbjct: 193 FMETLLYLLYQL 204
>gi|146338750|ref|YP_001203798.1| uptake hydrogenase small subunit [Bradyrhizobium sp. ORS278]
gi|146191556|emb|CAL75561.1| Uptake hydrogenase small subunit precursor (Hydrogenlyase)
(Membrane-bound hydrogenase small subunit)
[Bradyrhizobium sp. ORS278]
Length = 365
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 139 KPFVEKLKVMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVITNKPI-IKVPGCPP 197
Query: 162 TAE 164
AE
Sbjct: 198 IAE 200
>gi|198242210|ref|YP_002215354.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|197936726|gb|ACH74059.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
Length = 400
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 166 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 224
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 225 IPD-VMSAIIT 234
>gi|158422222|ref|YP_001523514.1| Ni-Fe hydrogenase small subunit protein [Azorhizobium caulinodans
ORS 571]
gi|46392530|gb|AAS91026.1| HupS [Azorhizobium caulinodans ORS 571]
gi|158329111|dbj|BAF86596.1| Ni-Fe hydrogenase small subunit protein [Azorhizobium caulinodans
ORS 571]
Length = 360
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + +IS GSCA+ G + R ++ P+ I VPGCPP
Sbjct: 138 KPFVDQLKKVAKDAKAIISWGSCASYGCVQAARPNPTRATPVHEVIFDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|302874042|ref|YP_003842675.1| hydrogenase (NiFe) small subunit HydA [Clostridium cellulovorans
743B]
gi|307689704|ref|ZP_07632150.1| [Ni/Fe] hydrogenase, small subunit [Clostridium cellulovorans 743B]
gi|302576899|gb|ADL50911.1| hydrogenase (NiFe) small subunit HydA [Clostridium cellulovorans
743B]
Length = 281
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 119 EPRYVISMGSCANGGGY--YHYSYSVVRGCDRIVPVDIY-VPGCPPTAEALIYGILLL 173
+ +YVI++G+CA+ GG + S + ++ VPGCP +I I L
Sbjct: 126 KAKYVIAVGTCASYGGPTATKPNPSSSTSVPDYLGTEVIRVPGCPANPHWVISTIAHL 183
>gi|197250876|ref|YP_002146238.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197214579|gb|ACH51976.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
Length = 381
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 147 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 205
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 206 IPD-VMSAIIT 215
>gi|182678135|ref|YP_001832281.1| hydrogenase (NiFe) small subunit HydA [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182634018|gb|ACB94792.1| hydrogenase (NiFe) small subunit HydA [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 358
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + +IS GSCA+ G + + + ++V P+ I VPGCPP
Sbjct: 138 RPFVEQLRRVAKDAKAIISWGSCASYGCVQAAAPNPTQATPVHKVVLDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|46451413|gb|AAS97951.1| NiFe hydrogenase small subunit [Arthrospira platensis FACHB439]
gi|46451421|gb|AAS97955.1| NiFe hydrogenase small subunit [Arthrospira platensis FACHB791]
Length = 158
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 39/118 (33%), Gaps = 36/118 (30%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG--------- 133
G + P DV +V G + N+ L + + + +IS G CA
Sbjct: 19 GCDLKEYPENVDVCLVEGGIANE--DNLELIKEVRSRTKLLISFGDCAVTANVPAMRNML 76
Query: 134 -------------------------GYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEAL 166
G V +V VDI++PGCPP+A+ +
Sbjct: 77 GSTDHVLKRCYLELGDFTPQLPREPGIVPELLERVTPAHEVVDVDIFMPGCPPSADRI 134
>gi|326627604|gb|EGE33947.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 400
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 166 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 224
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 225 IPD-VMSAIIT 234
>gi|291085810|ref|ZP_06354111.2| hydrogenase-2 small chain [Citrobacter youngae ATCC 29220]
gi|291069912|gb|EFE08021.1| hydrogenase-2 small chain [Citrobacter youngae ATCC 29220]
Length = 375
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 140 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 198
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 199 IPD-VMSAIIT 208
>gi|205359815|ref|ZP_02832530.2| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205342590|gb|EDZ29354.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
Length = 400
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 166 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 224
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 225 IPD-VMSAIIT 234
>gi|95032|pir||S11776 hydrogenase (EC 1.18.99.1) (uptake) small chain precursor -
Azotobacter chroococcum
gi|38714|emb|CAA37133.1| unnamed protein product [Azotobacter chroococcum]
Length = 344
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---IYVPGCPP 161
L ++ + + VI+ GSCA+ G + + +++ D I VPGCPP
Sbjct: 124 KPFLDQLKHAAKDAKAVIAWGSCASWGCVQAAKPNPTQAVPIHKVI-TDKPMIKVPGCPP 182
Query: 162 TAE 164
AE
Sbjct: 183 IAE 185
>gi|296447204|ref|ZP_06889134.1| hydrogenase (NiFe) small subunit HydA [Methylosinus trichosporium
OB3b]
gi|296255263|gb|EFH02360.1| hydrogenase (NiFe) small subunit HydA [Methylosinus trichosporium
OB3b]
Length = 363
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 17/67 (25%)
Query: 123 VISMGSCANGGGY--YHYSYSVVRGCDRIV----------PVDIYVPGCPPTA----EAL 166
VI+ G+CA GG + + G + P+ I VPGCP E L
Sbjct: 142 VIAAGTCATYGGVHGMKGNPTGCMGLADYLGWHFESKAGLPI-INVPGCPVQPDNFMETL 200
Query: 167 IYGILLL 173
+Y + L
Sbjct: 201 LYVLRQL 207
>gi|205360253|ref|ZP_02681956.2| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|205350916|gb|EDZ37547.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
Length = 400
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 166 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 224
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 225 IPD-VMSAIIT 234
>gi|205352545|ref|YP_002226346.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205272326|emb|CAR37206.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
Length = 372
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 138 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|194444862|ref|YP_002041043.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|205359013|ref|ZP_02666305.2| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|194403525|gb|ACF63747.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|205339583|gb|EDZ26347.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|323130059|gb|ADX17489.1| Hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
Length = 381
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 147 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 205
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 206 IPD-VMSAIIT 215
>gi|146279403|ref|YP_001169561.1| hypothetical protein Rsph17025_3376 [Rhodobacter sphaeroides ATCC
17025]
gi|145557644|gb|ABP72256.1| hypothetical protein Rsph17025_3376 [Rhodobacter sphaeroides ATCC
17025]
Length = 368
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS G+CA+ G + + R +++ P+ I VPGCPP
Sbjct: 138 KPFVEQLRMAAEHAKAIISWGACASYGCVQAAAPNPTRAVPVHKVILDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|320085711|emb|CBY95489.1| hydrogenase small chain [Salmonella enterica subsp. enterica
serovar Weltevreden str. 2007-60-3289-1]
Length = 381
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 147 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 205
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 206 IPD-VMSAIIT 215
>gi|207856706|ref|YP_002243357.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|206708509|emb|CAR32830.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
Length = 372
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 138 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|157779395|gb|ABV71239.1| soluble [NiFe] hydrogenase small delta subunit [Thermococcus
litoralis DSM 5473]
Length = 245
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 29/145 (20%)
Query: 61 GLACCAVEMMQASMPRYDLERFGFAPRASPRQS-------DVMIVAGTLTNKMASALRRV 113
CA+ ++ +DL F S DV IV G+++ + L +
Sbjct: 11 DCGGCALNILFLYEKLFDLLEFYEIKEFHMASSIKEHDTLDVAIVTGSVSTQRDLNL--L 68
Query: 114 YDQMPEPRYVISMGSCANGGGY---------------YHYSYSVVRGCD-----RIVPVD 153
+ +Y+I++G+CA G Y + ++ D + V VD
Sbjct: 69 HYARNHSKYLIALGTCATHGDVQASVEGKIREKLEKVYGTRANPMKALDSTPIVQHVAVD 128
Query: 154 IYVPGCPPTAEALIYGILLLQKKIR 178
+PGCP + + ++ L K +
Sbjct: 129 YALPGCPYDKDEIYQVLMNLAKGVE 153
>gi|161613709|ref|YP_001587674.1| hypothetical protein SPAB_01434 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194449251|ref|YP_002045832.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194737959|ref|YP_002114821.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195873186|ref|ZP_02696658.2| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197264979|ref|ZP_03165053.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197301007|ref|ZP_02662905.2| hydrogenase-1 small chain (NiFe hydrogenase) [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|204927960|ref|ZP_03219161.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205357938|ref|ZP_02574329.2| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|161363073|gb|ABX66841.1| hypothetical protein SPAB_01434 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194407555|gb|ACF67774.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194713461|gb|ACF92682.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195633977|gb|EDX52329.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197243234|gb|EDY25854.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197289290|gb|EDY28657.1| hydrogenase-1 small chain (NiFe hydrogenase) [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|204323302|gb|EDZ08498.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205328695|gb|EDZ15459.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|321224419|gb|EFX49482.1| Uptake hydrogenase small subunit precursor [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|323249844|gb|EGA33743.1| hydrogenase 1, small subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323263297|gb|EGA46833.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
Length = 400
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 166 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 224
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 225 IPD-VMSAIIT 234
>gi|161503087|ref|YP_001570199.1| hypothetical protein SARI_01152 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160864434|gb|ABX21057.1| hypothetical protein SARI_01152 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 372
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 138 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|114763659|ref|ZP_01443053.1| hydrogenase small subunit [Pelagibaca bermudensis HTCC2601]
gi|114543660|gb|EAU46673.1| hydrogenase small subunit [Roseovarius sp. HTCC2601]
Length = 329
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 27/154 (17%)
Query: 43 VDQLVTWARTGSLMWMTFGLACCAVEM----MQASMPRYDLERFGFAPRASPRQSDVMIV 98
+D L C V+ ++ D+ F + PR + +
Sbjct: 27 LDTLGDAGIEFLWHPSLSVETGCEVQALLRAVERGEIALDVLCFEGSVVTGPRGTGKFHM 86
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD----------- 147
M +R + P +V+++G+CA GG +
Sbjct: 87 LAGTGRSMLDWVRAL---APMAEHVVAVGTCAAFGGITAAGGNPAGAVGLQYDGRQKGAA 143
Query: 148 --------RIVPVDIYVPGCPPTAEALIYGILLL 173
+PV I V GCP + +L+L
Sbjct: 144 LDEGFTSRSGLPV-INVAGCPTHPAWVTETLLML 176
>gi|148253508|ref|YP_001238093.1| uptake hydrogenase small subunit [Bradyrhizobium sp. BTAi1]
gi|146405681|gb|ABQ34187.1| Uptake hydrogenase small subunit precursor [Bradyrhizobium sp.
BTAi1]
Length = 363
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 139 KPFVEKLKVMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVITNKPI-IKVPGCPP 197
Query: 162 TAE 164
AE
Sbjct: 198 IAE 200
>gi|117925795|ref|YP_866412.1| hydrogenase (NiFe) small subunit HydA [Magnetococcus sp. MC-1]
gi|117609551|gb|ABK45006.1| hydrogenase (NiFe) small subunit HydA [Magnetococcus sp. MC-1]
Length = 376
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 126 MGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTAEALI 167
GSCA+ GG + G ++ PV + +PGCPP +
Sbjct: 159 FGSCASWGGVPSSGINPTGAVGAPAVITDKPV-VTIPGCPPNPANFL 204
>gi|194470616|ref|ZP_03076600.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205357393|ref|ZP_02347356.2| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205358761|ref|ZP_02658885.2| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|224583723|ref|YP_002637521.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|194456980|gb|EDX45819.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|205321994|gb|EDZ09833.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205332143|gb|EDZ18907.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|224468250|gb|ACN46080.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 400
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 166 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 224
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 225 IPD-VMSAIIT 234
>gi|894097|gb|AAA69668.1| hydrogenase [Rhodobacter capsulatus]
Length = 977
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS G+CA+ G + + + +++ P+ I VPGCPP
Sbjct: 138 KPFVEKLRHAAEGAKAIISWGACASYGCVQAAAPNPTQATPVHKVITDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|17228183|ref|NP_484731.1| [NiFe] uptake hydrogenase small subunit [Nostoc sp. PCC 7120]
gi|3929404|gb|AAC79877.1| [NiFe] uptake hydrogenase small subunit [Nostoc sp. PCC 7120]
gi|17130033|dbj|BAB72645.1| [NiFe] uptake hydrogenase small subunit [Nostoc sp. PCC 7120]
Length = 320
Score = 36.9 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRI------------ 149
M L + +V+++G CA GG + S +G +
Sbjct: 91 RPMKDWLTDLAQAAS---FVVAVGDCATWGGIPAMEPNPSESQGLQFLKRKGGGFLGQDF 147
Query: 150 -----VPVDIYVPGCPPTAEAL 166
+PV I +PGCP + +
Sbjct: 148 RTKSGLPV-INIPGCPAHPDWI 168
>gi|34329632|gb|AAQ63965.1| HoxY [Arthrospira platensis FACHB341]
Length = 170
Score = 36.9 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 35/114 (30%), Gaps = 36/114 (31%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGG--------- 133
G + P DV +V G + N+ L + + +IS G CA
Sbjct: 31 GCDLKEYPENVDVCLVEGGIANE--DNLELIKQVRSRTKLLISFGDCAVTANVPAMRNML 88
Query: 134 -------------------------GYYHYSYSVVRGCDRIVPVDIYVPGCPPT 162
G V +V VDI++PGCPP+
Sbjct: 89 GSTDHVLKRCYLELGDFTPQLPREPGIVPELLERVSPVHEVVDVDIFMPGCPPS 142
>gi|289548880|ref|YP_003473868.1| hydrogenase (NiFe) small subunit HydA [Thermocrinis albus DSM
14484]
gi|289182497|gb|ADC89741.1| hydrogenase (NiFe) small subunit HydA [Thermocrinis albus DSM
14484]
Length = 354
Score = 36.9 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV---PVDIYVPGCPP 161
L + + VI+ GSCA+ G + + D+++ P+ I VPGCPP
Sbjct: 135 RPFLEVLKETAEGAMAVIAWGSCASWGCVQAAKPNPTTAVPIDKVIKDKPI-IKVPGCPP 193
Query: 162 TAE 164
AE
Sbjct: 194 IAE 196
>gi|200390927|ref|ZP_03217538.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|199603372|gb|EDZ01918.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
Length = 381
Score = 36.9 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 147 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 205
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 206 IPD-VMSAIIT 215
>gi|16765127|ref|NP_460742.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|238912149|ref|ZP_04655986.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|16420316|gb|AAL20701.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|261246972|emb|CBG24789.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267993739|gb|ACY88624.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301158310|emb|CBW17809.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312912776|dbj|BAJ36750.1| hydrogenase 1 small subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|322616782|gb|EFY13690.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322620407|gb|EFY17273.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625691|gb|EFY22510.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626141|gb|EFY22951.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322633747|gb|EFY30487.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322638901|gb|EFY35594.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322640720|gb|EFY37370.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644106|gb|EFY40651.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649178|gb|EFY45616.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655337|gb|EFY51645.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322660906|gb|EFY57137.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322662796|gb|EFY59003.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322667980|gb|EFY64139.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674258|gb|EFY70352.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322678539|gb|EFY74597.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322683198|gb|EFY79214.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322686891|gb|EFY82869.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323195218|gb|EFZ80398.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323200190|gb|EFZ85276.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323204518|gb|EFZ89522.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323207365|gb|EFZ92313.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323213718|gb|EFZ98500.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323217350|gb|EGA02069.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323219232|gb|EGA03727.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323228010|gb|EGA12155.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323231371|gb|EGA15484.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323235811|gb|EGA19890.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323240380|gb|EGA24423.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323245273|gb|EGA29273.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323252834|gb|EGA36670.1| hydrogenase 1, small subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323258537|gb|EGA42206.1| hydrogenase 1, small subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323266746|gb|EGA50232.1| hydrogenase 1, small subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323268952|gb|EGA52408.1| hydrogenase 1, small subunit [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326623099|gb|EGE29444.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|332988673|gb|AEF07656.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 372
Score = 36.9 bits (84), Expect = 1.5, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 138 RPFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|282901337|ref|ZP_06309262.1| [NiFe] uptake hydrogenase small subunit [Cylindrospermopsis
raciborskii CS-505]
gi|281193616|gb|EFA68588.1| [NiFe] uptake hydrogenase small subunit [Cylindrospermopsis
raciborskii CS-505]
Length = 320
Score = 36.5 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRI------------ 149
M L + +V+++G CA GG + S +G +
Sbjct: 91 RPMKQWLEDLAKAA---NFVVAIGDCATWGGIPAMSPNPSESQGLQFLKRKKGGFLGEDF 147
Query: 150 -----VPVDIYVPGCPPTAEAL 166
+PV I +PGCP + +
Sbjct: 148 ISKGGLPV-INIPGCPAHPDWI 168
>gi|130179|sp|P13063|PHSS_DESBA RecName: Full=Periplasmic [NiFeSe] hydrogenase small subunit;
AltName: Full=NiFeSe hydrogenlyase small chain; Flags:
Precursor
gi|145103|gb|AAA23376.1| small hydrogenase subunit precursor [Desulfomicrobium baculatum]
Length = 315
Score = 36.5 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 17/71 (23%)
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG-----------CDRIVPVD 153
M +R + P+ +++G+C+ GG +V ++++
Sbjct: 137 TMMELIRDL---APKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLL--- 190
Query: 154 IYVPGCPPTAE 164
+ VPGCPP +
Sbjct: 191 VNVPGCPPHPD 201
>gi|237730274|ref|ZP_04560755.1| hydrogenase [Citrobacter sp. 30_2]
gi|226905813|gb|EEH91731.1| hydrogenase [Citrobacter sp. 30_2]
Length = 387
Score = 36.5 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 152 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPP 210
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 211 IPD-VMSAIIT 220
>gi|119900075|ref|YP_935288.1| ferredoxin hydrogenase small subunit [Azoarcus sp. BH72]
gi|119672488|emb|CAL96402.1| ferredoxin hydrogenase, small chain [Azoarcus sp. BH72]
Length = 362
Score = 36.5 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + + +IS GSCA+ G + R +++ P+ + VPGCPP
Sbjct: 136 RPFVEKLRETAADCKAIISWGSCASWGCVQAAKPNPTRATPVHKVITDKPI-VKVPGCPP 194
Query: 162 TAE 164
AE
Sbjct: 195 IAE 197
>gi|182677502|ref|YP_001831648.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182633385|gb|ACB94159.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 273
Score = 36.5 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 25/93 (26%)
Query: 90 PRQSDVMIVAGTLT-NKMASALRRVYDQMPEPRYVISMGSCANGGGY------------- 135
P D+ +V G++T A +R V Q R+++++G+CA GG
Sbjct: 52 PGPYDLSLVEGSITTEHDAERIRMVRAQ---SRHLVTIGACATAGGIQTLKNFADVNAFI 108
Query: 136 --------YHYSYSVVRGCDRIVPVDIYVPGCP 160
Y + S VPVD + GCP
Sbjct: 109 AAVYASPQYIATLSTSTPISAHVPVDYELQGCP 141
>gi|269928404|ref|YP_003320725.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sphaerobacter
thermophilus DSM 20745]
gi|269787761|gb|ACZ39903.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Sphaerobacter
thermophilus DSM 20745]
Length = 355
Score = 36.5 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 13/80 (16%)
Query: 108 SALRRVY--DQMPEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVD---------I 154
+ P V+++G+CA GG + + + G + D +
Sbjct: 122 PITLNTWLDRLAPRAWAVVAIGTCATYGGIHAMAGNPTGCMGLADYLGWDFRSRAGIPIV 181
Query: 155 YVPGCPPTAEALIYGILLLQ 174
VPGCP + + +L L
Sbjct: 182 NVPGCPVQPDNFMETLLWLL 201
>gi|114763662|ref|ZP_01443056.1| hydrogenase protein small subunit [Pelagibaca bermudensis HTCC2601]
gi|114543663|gb|EAU46676.1| hydrogenase protein small subunit [Roseovarius sp. HTCC2601]
Length = 368
Score = 36.5 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS G+CA+ G + R +++ P+ I VPGCPP
Sbjct: 144 KPFVDQLKHAAEHAKAIISWGACASYGCVQAAKPNPTRATPVHKVITDKPI-IKVPGCPP 202
Query: 162 TAE 164
AE
Sbjct: 203 IAE 205
>gi|126657775|ref|ZP_01728929.1| [NiFe] uptake hydrogenase small subunit [Cyanothece sp. CCY0110]
gi|126620992|gb|EAZ91707.1| [NiFe] uptake hydrogenase small subunit [Cyanothece sp. CCY0110]
Length = 320
Score = 36.5 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------YHYSYSVVRGCDR 148
M L + +V+++G CA GG + G D
Sbjct: 91 RPMKDWLTDLSKIA---GFVVAVGDCATYGGIPAMEPNPSESLGVQFLKRNKGGFLGTDY 147
Query: 149 I----VPVDIYVPGCPPTAEAL 166
+ +PV I +PGCP + +
Sbjct: 148 VSQAGLPV-INIPGCPAHPDWI 168
>gi|46580330|ref|YP_011138.1| periplasmic [NiFe] hydrogenase small subunit, isozyme 1
[Desulfovibrio vulgaris str. Hildenborough]
gi|120602292|ref|YP_966692.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris DP4]
gi|47606750|sp|Q06173|PHNS1_DESVH RecName: Full=Periplasmic [NiFe] hydrogenase small subunit 1;
AltName: Full=NiFe hydrogenlyase small chain 1; Flags:
Precursor
gi|46449747|gb|AAS96397.1| periplasmic [NiFe] hydrogenase, small subunit, isozyme 1
[Desulfovibrio vulgaris str. Hildenborough]
gi|120562521|gb|ABM28265.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris DP4]
gi|311233691|gb|ADP86545.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris RCH1]
Length = 317
Score = 36.5 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 98 VAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCD---RIVPV 152
+ G + N ++ D +P+ + VI+ G+CA GG + + +G + + + V
Sbjct: 135 IYGKVANHTMLSI--CSDIVPKAKAVIAYGTCATFGGVQAAKPNPTGAKGLNDALKHLGV 192
Query: 153 D-IYVPGCPPTAEALI 167
+ I + GCPP L+
Sbjct: 193 NAINLAGCPPNPYNLV 208
>gi|5542157|pdb|1CC1|S Chain S, Crystal Structure Of A Reduced, Active Form Of The
Ni-Fe-Se Hydrogenase From Desulfomicrobium Baculatum
Length = 283
Score = 36.5 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 17/71 (23%)
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG-----------CDRIVPVD 153
M +R + P+ +++G+C+ GG +V ++++
Sbjct: 105 TMMELIRDL---APKSLATVAVGTCSAYGGIPAAEGNVTGSKSVRDFFADEKIEKLL--- 158
Query: 154 IYVPGCPPTAE 164
+ VPGCPP +
Sbjct: 159 VNVPGCPPHPD 169
>gi|20378768|gb|AAM20978.1| hydrogenase small subunit [Bradyrhizobium sp. UPM860]
Length = 176
Score = 36.5 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 80 KPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVITNKPI-IKVPGCPP 138
Query: 162 TAE 164
AE
Sbjct: 139 IAE 141
>gi|124268012|ref|YP_001022016.1| hydrogenase (acceptor) [Methylibium petroleiphilum PM1]
gi|124260787|gb|ABM95781.1| Hydrogenase (acceptor) [Methylibium petroleiphilum PM1]
Length = 364
Score = 36.5 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 28/163 (17%), Positives = 53/163 (32%), Gaps = 37/163 (22%)
Query: 38 FLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRY----------DLERFGFAPR 87
F+ + RT L CC+ ++++ P D + A
Sbjct: 35 FVPQIAHAMENKPRTPVLWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDYDDTLMAAA 94
Query: 88 ASPRQS------------DVMIVAGTLTNKM---------ASALRRVYDQMPEPRYVISM 126
++ ++ V G + ++ + + +IS
Sbjct: 95 GHQAEAILEEIMAKYKGNYILAVEGNPPLNQDGMSCIIGGKPFIDQLKHVAKDAKAIISW 154
Query: 127 GSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTAE 164
GSCA+ G + + +++ P+ I VPGCPP AE
Sbjct: 155 GSCASWGCVQAAKPNPTQATPVHKVIFDKPI-IKVPGCPPIAE 196
>gi|303240374|ref|ZP_07326892.1| hydrogenase (NiFe) small subunit HydA [Acetivibrio cellulolyticus
CD2]
gi|302592101|gb|EFL61831.1| hydrogenase (NiFe) small subunit HydA [Acetivibrio cellulolyticus
CD2]
Length = 299
Score = 36.5 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 14/68 (20%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD-------RIVPVDIYVPGC 159
A+R + ++ VI++G+CA GG + + +++ +PGC
Sbjct: 128 LDAIRLLGEKASH---VIAVGACATHGGVSAATPNPSESVSVQSLLKRKVIK----LPGC 180
Query: 160 PPTAEALI 167
P + +
Sbjct: 181 PCHPDWFL 188
>gi|296446379|ref|ZP_06888324.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus
trichosporium OB3b]
gi|296256152|gb|EFH03234.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus
trichosporium OB3b]
Length = 260
Score = 36.5 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 31/137 (22%)
Query: 52 TGSLMWMTFGLAC------CAVEMMQASMPRYDLERFGFAPRASPR-QSDVMIVAGTLTN 104
++ C C E++ + D+ F A RA R DV +V G++T
Sbjct: 9 RLAVWKFASCDGCQLTLLDCEDELLAVAQAL-DIAYFPEATRAPIRGNYDVSLVEGSITT 67
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGY---------------------YHYSYSVV 143
R+ D R ++++G+CA GG Y ++ +
Sbjct: 68 PHD--AERIQDVRCRSRSLVTIGACATSGGVQALRNFADVKDYASIVYARPDYIHTLATS 125
Query: 144 RGCDRIVPVDIYVPGCP 160
V VD + GCP
Sbjct: 126 TPIADHVKVDFELRGCP 142
>gi|270159418|ref|ZP_06188074.1| putative (NiFe) hydrogenase delta subunit [Legionella longbeachae
D-4968]
gi|289165771|ref|YP_003455909.1| coenzyme F420-reducing hydrogenase, gamma subunit [Legionella
longbeachae NSW150]
gi|269987757|gb|EEZ94012.1| putative (NiFe) hydrogenase delta subunit [Legionella longbeachae
D-4968]
gi|288858944|emb|CBJ12870.1| putative coenzyme F420-reducing hydrogenase, gamma subunit
[Legionella longbeachae NSW150]
Length = 261
Score = 36.5 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 23/103 (22%)
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----YHY--------- 138
D+ V G+++ R+ +YVI++G+CA GG +
Sbjct: 51 VDIAFVEGSISTPEEE--IRIKKIRENSKYVITIGACATSGGIQALRNFVDAKKWIGSIY 108
Query: 139 -------SYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
S + V VD + GCP + ++ I L
Sbjct: 109 ASPKHIKSLNTSTPISHHVKVDWELWGCPVNSNQVMEAIRFLL 151
>gi|134291342|ref|YP_001115111.1| hydrogenase (NiFe) small subunit HydA [Burkholderia vietnamiensis
G4]
gi|134134531|gb|ABO58856.1| hydrogenase (NiFe) small subunit HydA [Burkholderia vietnamiensis
G4]
Length = 358
Score = 36.5 bits (83), Expect = 1.7, Method: Composition-based stats.
Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 37/150 (24%)
Query: 51 RTGSLMWMTFGLACCAVEMMQASMPRY----------DLERFGFAPRASPRQS------- 93
RT L CC+ ++++ P D + A ++
Sbjct: 49 RTPVLWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDYDDLLMASAGHQAEAILEEVMT 108
Query: 94 -----DVMIVAGTLTNKM---------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
++ V G + ++ + + VIS GSCA+ G
Sbjct: 109 KYKGNYILAVEGNPPLNQDGMSCIIGGKPFVDQLRRVSKDAKAVISWGSCASWGCVQAAK 168
Query: 140 YSVVR--GCDRIV---PVDIYVPGCPPTAE 164
+ + +++ P+ I VPGCPP AE
Sbjct: 169 PNPTQAVPIHKVITDKPI-IKVPGCPPIAE 197
>gi|20378766|gb|AAM20977.1| hydrogenase small subunit [Bradyrhizobium sp. UPM1029]
Length = 179
Score = 36.5 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 80 KPFVEKLKMMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVITNKPI-IKVPGCPP 138
Query: 162 TAE 164
AE
Sbjct: 139 IAE 141
>gi|288941753|ref|YP_003443993.1| hydrogenase (NiFe) small subunit hydA [Allochromatium vinosum DSM
180]
gi|288897125|gb|ADC62961.1| hydrogenase (NiFe) small subunit HydA [Allochromatium vinosum DSM
180]
Length = 367
Score = 36.5 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD-----RIVPVDIYVPGCPPTAEAL 166
+ + + VI++G+CA GG + R PV I VPGCPP +
Sbjct: 147 LMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPV-INVPGCPPIPMVI 204
>gi|189219332|ref|YP_001939973.1| Ni,Fe-hydrogenase I small subunit [Methylacidiphilum infernorum V4]
gi|189186190|gb|ACD83375.1| Ni,Fe-hydrogenase I small subunit [Methylacidiphilum infernorum V4]
Length = 372
Score = 36.5 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 38/154 (24%)
Query: 55 LMWMTFGLACCAVEMMQASMP------------RYD---LERFGFAPRASPRQS------ 93
L CC+ +++ P YD + G S RQ+
Sbjct: 46 LWLHGLECTCCSESFIRSGHPLVKDVLLSMISLDYDDTLMAAAGEQAEKSLRQTVENYKG 105
Query: 94 -DVMIVAG-TLTNKM--------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV 143
++ V G T + + ++ + + +I+ GSCA+ G +
Sbjct: 106 QYLLAVEGNPPTKEEGMFCIVGGKPFIEQLKWAAKDAKAIIAWGSCASSGCVQAAKPNPT 165
Query: 144 R--GCDRIV---PVDIYVPGCPPTAEALIYGILL 172
I+ PV I VPGCPP AE ++ GI+
Sbjct: 166 GATPIHEIIKDKPV-IRVPGCPPIAE-VMTGIIT 197
>gi|111017056|ref|YP_700028.1| hydrogenase [Rhodococcus jostii RHA1]
gi|110816586|gb|ABG91870.1| hydrogenase [Rhodococcus jostii RHA1]
Length = 261
Score = 36.5 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 31/137 (22%)
Query: 52 TGSLMWMTFGLAC------CAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNK 105
++ C C E++ S + + D+ +V G++T
Sbjct: 10 KLAVWKFASCDGCQLTLLDCEDELLALSEAVEISHFLELSDTITAGPYDLSLVEGSITTA 69
Query: 106 -MASALRRVYDQMPEPRYVISMGSCANGGGY---------------------YHYSYSVV 143
+R V +Q R+++++G+CA GG Y + +
Sbjct: 70 ADRDRIRAVREQ---SRFLVTIGACATAGGIQALRNFADIDEFLSVVYARPEYIDTLATS 126
Query: 144 RGCDRIVPVDIYVPGCP 160
VPVD + GCP
Sbjct: 127 TAISAHVPVDFELRGCP 143
>gi|116625606|ref|YP_827762.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
Solibacter usitatus Ellin6076]
gi|116228768|gb|ABJ87477.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Candidatus
Solibacter usitatus Ellin6076]
Length = 355
Score = 36.5 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 13/69 (18%)
Query: 118 PEPRYVISMGSCANGGGY--YHYSYSVVRGCDRIV----------PVDIYVPGCPPTAEA 165
P+ V+ G+CA GG + + G + P+ + VPGCP +
Sbjct: 134 PKALAVVGAGTCATYGGIHAMQGNPTGCMGLADYLGWNWKSKAGLPI-VNVPGCPVQPDN 192
Query: 166 LIYGILLLQ 174
+ +L L
Sbjct: 193 FMETLLYLL 201
>gi|291435521|ref|ZP_06574911.1| NADH ubiquinone oxidoreductase [Streptomyces ghanaensis ATCC 14672]
gi|291338416|gb|EFE65372.1| NADH ubiquinone oxidoreductase [Streptomyces ghanaensis ATCC 14672]
Length = 360
Score = 36.5 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPPTAEAL 166
P+ V++ G+CA GG + + + G + D + VPGCP E
Sbjct: 139 PQAWAVVAAGTCATFGGIHAMAGNPTGSMGLADYLGWDFTSQGALPIVNVPGCPIQPENF 198
Query: 167 IYGIL 171
+ ++
Sbjct: 199 METLV 203
>gi|257459572|ref|ZP_05624681.1| quinone-reactive Ni/Fe-hydrogenase small chain [Campylobacter
gracilis RM3268]
gi|257442997|gb|EEV18131.1| quinone-reactive Ni/Fe-hydrogenase small chain [Campylobacter
gracilis RM3268]
Length = 381
Score = 36.5 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYYHYSYSVVR--GCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + G ++I+ PV + +PGCPP+
Sbjct: 178 IGTCSSFGGIQAAAPNPTGAVGLEKIISKPV-VNIPGCPPS 217
>gi|239927177|ref|ZP_04684130.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Streptomyces
ghanaensis ATCC 14672]
Length = 362
Score = 36.5 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPPTAEAL 166
P+ V++ G+CA GG + + + G + D + VPGCP E
Sbjct: 141 PQAWAVVAAGTCATFGGIHAMAGNPTGSMGLADYLGWDFTSQGALPIVNVPGCPIQPENF 200
Query: 167 IYGIL 171
+ ++
Sbjct: 201 METLV 205
>gi|198283184|ref|YP_002219505.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665380|ref|YP_002425413.1| [NiFe] hydrogenase, delta subunit, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247705|gb|ACH83298.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218517593|gb|ACK78179.1| [NiFe] hydrogenase, delta subunit, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 265
Score = 36.5 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 25/104 (24%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------- 135
D+ V G++ T + ++++ R++IS+G+CA GG
Sbjct: 54 VDIAFVEGSVSTPEDEERIQKI---RKNSRHLISIGACATAGGLQALRNLADGPGWIAEI 110
Query: 136 -----YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
+ +S + VPVD+ + GCP ++ + L
Sbjct: 111 YAQPEHIHSLATSTPIAAHVPVDLELWGCPVNGRQVLGAVRALL 154
>gi|82702796|ref|YP_412362.1| hydrogen dehydrogenase [Nitrosospira multiformis ATCC 25196]
gi|82410861|gb|ABB74970.1| Hydrogen dehydrogenase [Nitrosospira multiformis ATCC 25196]
Length = 182
Score = 36.5 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 46/133 (34%), Gaps = 38/133 (28%)
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY--- 135
+R F D+ IV G ++N A R + + ++++GSCA G
Sbjct: 41 FDRTPFTDIKHCGPCDIGIVEGGVSN--AENARVLKEFRENCNVLVAIGSCAITGNVPAL 98
Query: 136 ---------YHYSY---------------------SVVRGCDRIVPVDIYVPGCPPTAEA 165
+ Y V +V VD ++ GCPP A+A
Sbjct: 99 RNNIDLWDCFQEVYLYDSGTEGKQIPNDPELPLPFDKVYPIYEVVKVDYFLHGCPPPADA 158
Query: 166 L---IYGILLLQK 175
+ + ++ ++
Sbjct: 159 IWRFLTALIQGRE 171
>gi|319940470|ref|ZP_08014815.1| ferredoxin hydrogenase [Sutterella wadsworthensis 3_1_45B]
gi|319806096|gb|EFW02845.1| ferredoxin hydrogenase [Sutterella wadsworthensis 3_1_45B]
Length = 364
Score = 36.1 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 37/150 (24%)
Query: 51 RTGSLMWMTFGLACCAVEMMQASMP------------RYD---LERFGFAPRASPRQS-- 93
RT + CC+ +++ P YD + G S ++
Sbjct: 49 RTPVIWLHGLECTCCSEAFIRSYTPIVADVVTNMVSLDYDDTIMAAAGEQAEESLHETIE 108
Query: 94 -----DVMIVAGTLTNKM---------ASALRRVYDQMPEPRYVISMGSCANGGGYY--H 137
++ V G + L ++ + VI GSCA G
Sbjct: 109 KYKGNYILAVEGNIPLHQGGINCVPNGEIFLNKIKHVAEGAKAVIGWGSCAAWGCVQAAK 168
Query: 138 YSYSVVRGCDRIV---PVDIYVPGCPPTAE 164
+ + ++ P+ + VPGCPP E
Sbjct: 169 PNPTECVPITEVITDKPI-VLVPGCPPIPE 197
>gi|322714827|gb|EFZ06398.1| hydrogenase-1 small chain [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 372
Score = 36.1 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPT 162
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 139 PFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPPI 197
Query: 163 AEALIYGILL 172
+ ++ I+
Sbjct: 198 PD-VMSAIIT 206
>gi|116309811|emb|CAH66849.1| OSIGBa0103M18.1 [Oryza sativa Indica Group]
Length = 1408
Score = 36.1 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 11/115 (9%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAP 86
S + I + ++ + AR + + G E+M D R G
Sbjct: 657 SMADNNIVFGNVVTKYMEDKIKKARRHRV--VAQGTQVHRYEIMCV-----DRSRRGIYR 709
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS 141
+ + ++ + G + M L + P + + G C Y +YS
Sbjct: 710 KQAVQECVLKADGGCTCSCMKPKLHHL----PCSHVLAAAGDCGISPNVYVSNYS 760
>gi|121604876|ref|YP_982205.1| hydrogenase (NiFe) small subunit HydA [Polaromonas
naphthalenivorans CJ2]
gi|120593845|gb|ABM37284.1| hydrogenase (NiFe) small subunit HydA [Polaromonas
naphthalenivorans CJ2]
Length = 364
Score = 36.1 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 50/150 (33%), Gaps = 37/150 (24%)
Query: 51 RTGSLMWMTFGLACCAVEMMQASMPRY----------DLERFGFAPRASPRQS------- 93
RT L CC+ ++++ P D + A ++
Sbjct: 48 RTPVLWLHGLECTCCSESFIRSAHPLAKDVVLSMISLDYDDTLMAAAGHQAEAILEEIMV 107
Query: 94 -----DVMIVAGTLTNKM---------ASALRRVYDQMPEPRYVISMGSCANGGGYYHYS 139
++ V G + ++ + + +IS GSCA+ G
Sbjct: 108 KYKGNYILAVEGNPPLNQDGMSCIIGGKPFIEQLKHVAKDAKAIISWGSCASWGCVQAAK 167
Query: 140 YSVVR--GCDRIV---PVDIYVPGCPPTAE 164
+ + +++ P+ I VPGCPP AE
Sbjct: 168 PNPTQATPIHKVIFDKPI-IKVPGCPPIAE 196
>gi|294633831|ref|ZP_06712388.1| uptake hydrogenase small subunit [Streptomyces sp. e14]
gi|292830083|gb|EFF88435.1| uptake hydrogenase small subunit [Streptomyces sp. e14]
Length = 369
Score = 36.1 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 114 YDQMPEPRY-VISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPP 161
DQ+ + V+++G+CA GG + + + G + D + VPGCP
Sbjct: 136 IDQLAPRAWAVVAVGTCATYGGIHAMAGNPTGSMGLADYLGWDFRSQGALPIVNVPGCPI 195
Query: 162 TAEALIYGI 170
E + +
Sbjct: 196 QPENFMETL 204
>gi|117925783|ref|YP_866400.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Magnetococcus sp.
MC-1]
gi|117609539|gb|ABK44994.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Magnetococcus sp.
MC-1]
Length = 335
Score = 36.1 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 20/86 (23%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD------------------- 147
+ V + V+++GSCA GG + +
Sbjct: 97 RPMMAVVKELAALAGQVVAVGSCAAYGGVTAGGGNHTQAVGLHYVGRKRGGLLGAAFRAR 156
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLL 173
+ +PV I V GCP ++ + L
Sbjct: 157 QGLPV-INVAGCPTHPNWVLECLAEL 181
>gi|300785671|ref|YP_003765962.1| hydrogenase small subunit [Amycolatopsis mediterranei U32]
gi|299795185|gb|ADJ45560.1| hydrogenase small subunit [Amycolatopsis mediterranei U32]
Length = 339
Score = 36.1 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 11/87 (12%)
Query: 99 AGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD--- 153
T + +A + P+ ++++G+CA+ GG + + + G + D
Sbjct: 121 TDPATGQPVTASEWLDRLAPKAMAILAVGTCASYGGVHAMAGNPTGAMGVPEYLGRDWRS 180
Query: 154 ------IYVPGCPPTAEALIYGILLLQ 174
+ VPGCP + L IL L
Sbjct: 181 WAGLPIVCVPGCPVQPDNLSETILHLL 207
>gi|193216358|ref|YP_001997557.1| hydrogenase (NiFe) small subunit HydA [Chloroherpeton thalassium
ATCC 35110]
gi|193089835|gb|ACF15110.1| hydrogenase (NiFe) small subunit HydA [Chloroherpeton thalassium
ATCC 35110]
Length = 360
Score = 36.1 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 100 GTLTNKMASALRRVYDQMPEPRY-VISMGSCANGGGYY--HYSYSVVRGCDRIV---PVD 153
G A V + E VI+ GSCA+ G + + S ++ P+
Sbjct: 130 GVYCMVGGEAFVDVLRETAEDAMAVIAWGSCASFGCVQNAYPNPSGAAPVSEVISGKPI- 188
Query: 154 IYVPGCPPTAE 164
+ VPGCPP AE
Sbjct: 189 VNVPGCPPIAE 199
>gi|53794611|gb|AAU93828.1| membrane-bound hydrogenase small subunit [Allochromatium vinosum]
Length = 314
Score = 36.1 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD-----RIVPVDIYVPGCPPTAEAL 166
+ + + VI++G+CA GG + R PV I VPGCPP +
Sbjct: 94 LMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPV-INVPGCPPIPMVI 151
>gi|163782601|ref|ZP_02177598.1| hydrogenase small subunit [Hydrogenivirga sp. 128-5-R1-1]
gi|159882174|gb|EDP75681.1| hydrogenase small subunit [Hydrogenivirga sp. 128-5-R1-1]
Length = 301
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 33/132 (25%)
Query: 72 ASMPRYDLERFGFAPRAS----PRQSDVMIVAGTLTNKMASALRRVYDQMPEPR------ 121
P ER S + DV+I G + + R +M +
Sbjct: 36 LFCPFLSWERSEEEVVPSILEGQEELDVLIFEGAVGKNLR---RLCGMEMRKVLKKLAKK 92
Query: 122 --YVISMGSCANGGGY--------------YHYSYSVVRG---CDRIVPVDIYVPGCPPT 162
YVI++G+CA G + + V+ G +PV I + GCP
Sbjct: 93 AHYVIALGNCAVFGNIPGKYSQEVKGLQYRFKHRGGVLGGNFRSGSGLPV-INLSGCPAH 151
Query: 163 AEALIYGILLLQ 174
L Y +L +
Sbjct: 152 PSWLSYVLLKIL 163
>gi|119509247|ref|ZP_01628397.1| [NiFe] uptake hydrogenase small subunit [Nodularia spumigena
CCY9414]
gi|119466089|gb|EAW46976.1| [NiFe] uptake hydrogenase small subunit [Nodularia spumigena
CCY9414]
Length = 304
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRI------------ 149
M L + +++++G CA GG + S +G +
Sbjct: 75 RPMKDWLTDLSQAAK---FIVAVGDCATWGGIPAMSPNPSESQGLQFLKREKGGFLGKDF 131
Query: 150 -----VPVDIYVPGCPPTAEAL 166
+PV I +PGCP + +
Sbjct: 132 VSKAGLPV-INIPGCPAHPDWI 152
>gi|62180352|ref|YP_216769.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|62127985|gb|AAX65688.1| hydrogenase-1 small subunit [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
Length = 362
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPT 162
+ ++ +I+ G+CA+ G + + D+++ P+ + VPGCPP
Sbjct: 129 PFIEKLKKAAAGASAIIAWGNCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPPI 187
Query: 163 AEALIYGILL 172
+ ++ I+
Sbjct: 188 PD-VMSAIIT 196
>gi|325294576|ref|YP_004281090.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065024|gb|ADY73031.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 316
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 144 RGCDRIVPVDIYVPGCPPT 162
R D++V VD YV GCPP
Sbjct: 152 RALDQVVKVDYYVGGCPPH 170
>gi|260460224|ref|ZP_05808476.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium
opportunistum WSM2075]
gi|259033869|gb|EEW35128.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Mesorhizobium
opportunistum WSM2075]
Length = 320
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------YHYSYSVVRGCD- 147
M +R + +V+++G CA GG + G D
Sbjct: 91 RPMRDWVRDLCKVA---NFVVAVGDCATWGGIPATAPNPSESEGLQFLKRGHGGFLGKDF 147
Query: 148 ---RIVPVDIYVPGCPPTAEAL 166
+PV I +PGCP + +
Sbjct: 148 KSKAGLPV-INIPGCPAHPDWI 168
>gi|30179733|sp|P18637|MBHS_RHILV RecName: Full=Uptake hydrogenase small subunit; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase small subunit; Flags: Precursor
gi|48721|emb|CAA37148.1| hupS [Rhizobium leguminosarum]
Length = 360
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 KPFVEKLKWMAEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVILDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|119385816|ref|YP_916871.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Paracoccus
denitrificans PD1222]
gi|119376411|gb|ABL71175.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Paracoccus
denitrificans PD1222]
Length = 329
Score = 36.1 bits (82), Expect = 2.2, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 20/86 (23%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD------------------- 147
L + D P +V+++G+CA GG +
Sbjct: 92 RPLLDWLRDLAPLAAHVVAVGTCATYGGVTTAGGNPSDAVGVQYDGAHPGGALPATFRAR 151
Query: 148 RIVPVDIYVPGCPPTAEALIYGILLL 173
+PV I + GCP + + +L+L
Sbjct: 152 AGLPV-INIAGCPTHPDWVTETLLML 176
>gi|242279386|ref|YP_002991515.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio salexigens DSM
2638]
gi|242122280|gb|ACS79976.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio salexigens DSM
2638]
Length = 315
Score = 36.1 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPTA 163
L V + +P+ + I +G+CA GG + S +G + + +PGCP
Sbjct: 144 MLEIVQEIVPQAKATICIGTCACYGGVQAAAPNPSQAKGVSEALGGVTTVNLPGCPTNP 202
>gi|172035979|ref|YP_001802480.1| [NiFe] uptake hydrogenase small subunit [Cyanothece sp. ATCC 51142]
gi|109692200|gb|ABG37988.1| HupS [Cyanothece sp. ATCC 51142]
gi|171697433|gb|ACB50414.1| [NiFe] uptake hydrogenase small subunit [Cyanothece sp. ATCC 51142]
Length = 320
Score = 36.1 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY---------------YHYSYSVVRGCDR 148
M L + +V+++G CA GG + G D
Sbjct: 91 RPMKDWLTELSKIA---GFVVAVGDCATYGGIPAMEPNPSESLGVQFLKRNKGGFLGADY 147
Query: 149 I----VPVDIYVPGCPPTAEAL 166
+ +PV I +PGCP + +
Sbjct: 148 VSQAGLPV-INIPGCPSHPDWI 168
>gi|294676321|ref|YP_003576936.1| uptake hydrogenase small subunit [Rhodobacter capsulatus SB 1003]
gi|3420956|gb|AAC32032.1| HupU [Rhodobacter capsulatus]
gi|294475141|gb|ADE84529.1| uptake hydrogenase, small subunit [Rhodobacter capsulatus SB 1003]
Length = 332
Score = 36.1 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 24/112 (21%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV 142
G R +++GT M +R + P +V+++GSCA GG +
Sbjct: 72 GAIARGPMGTGRFQMLSGT-GRSMLDWVRAL---APLAGHVVAVGSCAAYGGVTSAGGNP 127
Query: 143 VRGCD-------------------RIVPVDIYVPGCPPTAEALIYGILLLQK 175
+PV + + GCP + ++LL +
Sbjct: 128 SDAVGLAFEGAHPGGVLAAEFRARSGLPV-VNIAGCPTHPGWVTETLMLLAR 178
>gi|303327297|ref|ZP_07357739.1| nickel-iron hydrogenase, small subunit [Desulfovibrio sp. 3_1_syn3]
gi|302863285|gb|EFL86217.1| nickel-iron hydrogenase, small subunit [Desulfovibrio sp. 3_1_syn3]
Length = 372
Score = 36.1 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVP--VDIYVPGCPPT 162
+ ++ + + V++ G+CA+ G S + ++ P + VPGCP
Sbjct: 138 KPFMDKLARGVEHAKAVVAWGTCASWGCVQAASPNPTAATPLHKLFPNKPQLKVPGCPAI 197
Query: 163 AEALIYGIL 171
E ++ IL
Sbjct: 198 PE-VMSAIL 205
>gi|298489059|ref|ZP_07007081.1| Myo-inositol-1(or 4)-monophosphatase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298156371|gb|EFH97469.1| Myo-inositol-1(or 4)-monophosphatase [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 247
Score = 36.1 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMP---RYDLERF 82
+ E G+++ +D + R L + ++ E+ + P R
Sbjct: 67 EEMGGEFITDGWVIDPIDGTGNYLRGTPLWGIAVAYMSAGEPEIGVVAYPALGYTLAART 126
Query: 83 G------FAPRASPRQSDVMIVAGTL--TNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
G P PR + + +AG T A + +++ + + ++ CA G
Sbjct: 127 GDGLLRNGVPFVRPRPPEHLRIAGVGENTRWDAEEMGKLHLSLRRQGWGLAGYRCATIGL 186
Query: 135 YY 136
+
Sbjct: 187 AF 188
>gi|581493|emb|CAA31869.1| hydrogenase small subunit preprotein (AA -45 to 313) [Rhodobacter
capsulatus]
Length = 358
Score = 36.1 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS G+CA+ G + + + +++ P+ I VPGCPP
Sbjct: 138 KPFVEKLRHAAEGAKAIISWGACASYGCVQAAAPNPTQATPVHKVITDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|294676324|ref|YP_003576939.1| hydrogenase small subunit [Rhodobacter capsulatus SB 1003]
gi|294475144|gb|ADE84532.1| hydrogenase, small subunit [Rhodobacter capsulatus SB 1003]
Length = 358
Score = 36.1 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS G+CA+ G + + + +++ P+ I VPGCPP
Sbjct: 138 KPFVEKLRHAAEGAKAIISWGACASYGCVQAAAPNPTQATPVHKVITDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|20378778|gb|AAM20983.1| hydrogenase small subunit [Azorhizobium caulinodans ORS 571]
Length = 179
Score = 36.1 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + +IS GSCA+ G + R ++ P+ I VPGCPP
Sbjct: 80 KPFVDQLKKVAKDAKAIISWGSCASYGCVQAARPNPTRATPVHEVIFDKPI-IKVPGCPP 138
Query: 162 TAE 164
AE
Sbjct: 139 IAE 141
>gi|123753|sp|P15283|MBHS_RHOCA RecName: Full=Uptake hydrogenase small subunit; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase small subunit; Flags: Precursor
Length = 358
Score = 36.1 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS G+CA+ G + + + +++ P+ I VPGCPP
Sbjct: 138 KPFVEKLRHAAEGAKAIISWGACASYGCVQAAAPNPTQATPVHKVITDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|254498957|ref|ZP_05111660.1| sulfhydrogenase delta subunit [Legionella drancourtii LLAP12]
gi|254351815|gb|EET10647.1| sulfhydrogenase delta subunit [Legionella drancourtii LLAP12]
Length = 263
Score = 36.1 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 27/112 (24%)
Query: 93 SDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------- 135
D+ V G+++ R+ +Y+I++GSCA GG
Sbjct: 53 VDIAFVEGSISTPDEE--LRIKKIRENSKYIITIGSCATAGGIQALRNVTDSKDWMASVY 110
Query: 136 ----YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK----KIRR 179
Y S S V VD + GCP ++ I L +I+R
Sbjct: 111 ASPEYIKSLSTSTAISHHVKVDWELWGCPVNGNQVLEAIRFLLSNATPRIKR 162
>gi|302148812|pdb|3MYR|A Chain A, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
gi|302148814|pdb|3MYR|C Chain C, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
gi|302148816|pdb|3MYR|E Chain E, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
gi|302148818|pdb|3MYR|G Chain G, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
Length = 269
Score = 36.1 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 113 VYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD-----RIVPVDIYVPGCPPTAEAL 166
+ + + VI++G+CA GG + R PV I VPGCPP +
Sbjct: 97 LMETVEHAAAVIAVGTCAAFGGLPQARPNPTGAMSVMDLVRDKPV-INVPGCPPIPMVI 154
>gi|149917175|ref|ZP_01905675.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Plesiocystis
pacifica SIR-1]
gi|149822091|gb|EDM81484.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Plesiocystis
pacifica SIR-1]
Length = 258
Score = 36.1 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 31/116 (26%)
Query: 66 AVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVIS 125
AV+++ D++ G D+ +V G+++ R + R +++
Sbjct: 35 AVDIVHFPEASSDMDPHGRF--------DLTLVEGSVSTPAQLDELRAIRA--QSRTLVA 84
Query: 126 MGSCANGGGY---------------------YHYSYSVVRGCDRIVPVDIYVPGCP 160
+G+CA GG Y + + V V VD + GCP
Sbjct: 85 IGACATAGGVQALRNFADHREYVRAVYATPAYIETLAQVTPIAAHVRVDFELRGCP 140
>gi|47177026|ref|YP_015637.1| [Ni/Fe] hydrogenase-like protein small subunit [Oligotropha
carboxidovorans OM5]
gi|47115417|emb|CAG28470.1| [NiFe] hydrogenase-like protein small subunit [Oligotropha
carboxidovorans OM5]
Length = 258
Score = 36.1 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 23/91 (25%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY-------------YHYSYSVVRGCDRI- 149
M LR + P YV+++G+CA GG + +
Sbjct: 19 RPMLDWLRLI---APLANYVVAVGTCATYGGITAAGNNPTDATGLQYDGRNEGGALGAAF 75
Query: 150 -----VPVDIYVPGCPPTAEALIYGILLLQK 175
+PV + + GCP + ++LL +
Sbjct: 76 RSRSGLPV-VNIAGCPTHPNWVSETLMLLSE 105
>gi|262275750|ref|ZP_06053559.1| NAD-reducing hydrogenase subunit HoxY [Grimontia hollisae CIP
101886]
gi|262219558|gb|EEY70874.1| NAD-reducing hydrogenase subunit HoxY [Grimontia hollisae CIP
101886]
Length = 205
Score = 35.8 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 35/87 (40%)
Query: 122 YVISMGSCANGGGY----------------YHYSYSVVRGCDRIVP-VDI---------- 154
+IS+G+CA GG Y S + G D ++P VD+
Sbjct: 103 ILISVGACAVWGGVPAMRNQVSLTECLDEAYISSVTRPAGSDNVIPHVDVPKITTKVYPA 162
Query: 155 --------YVPGCPPTAEALIYGILLL 173
++PGCPP +A+ + L
Sbjct: 163 HEVVKMDYFIPGCPPDGDAIFKVLDDL 189
>gi|227876426|ref|ZP_03994538.1| hydrogenase (acceptor) [Mobiluncus mulieris ATCC 35243]
gi|269975989|ref|ZP_06182993.1| uptake hydrogenase small subunit [Mobiluncus mulieris 28-1]
gi|306817377|ref|ZP_07451122.1| hydrogenase-2 small chain [Mobiluncus mulieris ATCC 35239]
gi|227842967|gb|EEJ53164.1| hydrogenase (acceptor) [Mobiluncus mulieris ATCC 35243]
gi|269935817|gb|EEZ92347.1| uptake hydrogenase small subunit [Mobiluncus mulieris 28-1]
gi|304649818|gb|EFM47098.1| hydrogenase-2 small chain [Mobiluncus mulieris ATCC 35239]
Length = 423
Score = 35.8 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 92 QSDVMIVAGTLTNKMA--------SALRRVYDQMPEPR-YVISMGSCANGGGYYHYSYSV 142
Q +++V G++ K + ++V ++ E ++++G+CA G +
Sbjct: 142 QDHILVVNGSIPVKDGGIYCTIGGKSAQQVLEESAENASMILAVGACAVYGSVQAARPNP 201
Query: 143 VR--GCDRIV---PVDIYVPGCPPTAEAL 166
G D I+ PV I V GCPP E +
Sbjct: 202 TGAVGVDEIIKDKPV-INVAGCPPIGEVI 229
>gi|291276840|ref|YP_003516612.1| putative Ni/Fe-hydrogenase small subunit [Helicobacter mustelae
12198]
gi|290964034|emb|CBG39873.1| putative Ni/Fe-hydrogenase small subunit [Helicobacter mustelae
12198]
Length = 544
Score = 35.8 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 123 VISMGSCANGGGYYHYSYSVV--RGCDRIVP--VDIYVPGCPPTAEALIYGIL 171
V +G+CA+ GG + + + ++ V + +PGCPP+ ++Y ++
Sbjct: 158 VFGVGTCASFGGVQAANPNPTNTQSIHELISRQV-VNIPGCPPSDINIVYSLM 209
>gi|312196550|ref|YP_004016611.1| hydrogenase (NiFe) small subunit HydA [Frankia sp. EuI1c]
gi|311227886|gb|ADP80741.1| hydrogenase (NiFe) small subunit HydA [Frankia sp. EuI1c]
Length = 416
Score = 35.8 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPPTAEAL 166
P+ V+++G+CA GG + + + G + D + VPGCP + L
Sbjct: 177 PKALAVLAVGTCATYGGIHAMAGNPTGAMGVPDYLGWDWKSSAGIPIVCVPGCPIQPDNL 236
Query: 167 IYGILLLQ 174
I+ L
Sbjct: 237 SETIVYLL 244
>gi|326200938|ref|ZP_08190810.1| hydrogenase (NiFe) small subunit HydA [Clostridium papyrosolvens
DSM 2782]
gi|325988506|gb|EGD49330.1| hydrogenase (NiFe) small subunit HydA [Clostridium papyrosolvens
DSM 2782]
Length = 299
Score = 35.8 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 123 VISMGSCANGGGYY----HYSYSVVRGCDRIVP-VDIYVPGCPPTAEALI 167
VI++G+CA+ GG + S SV G I+ I +PGCP + +
Sbjct: 140 VIALGACASHGGVSAAKPNPSDSV--GVQSILKRKVIKLPGCPCHPDWFM 187
>gi|146301645|ref|YP_001196236.1| hydrogenase (NiFe) small subunit HydA [Flavobacterium johnsoniae
UW101]
gi|146156063|gb|ABQ06917.1| hydrogenase (NiFe) small subunit HydA [Flavobacterium johnsoniae
UW101]
Length = 375
Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
A+ + + + +I+ GSCA G + ++I+ P+ I VPGCPP
Sbjct: 144 AIDILKESAAGAKAIIAWGSCATTGCVQAAKPNPTGAVPINKIITDKPI-INVPGCPP 200
>gi|330888083|gb|EGH20744.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
mori str. 301020]
Length = 247
Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMP---RYDLERF 82
+ E G+++ +D + R L + ++ E+ + P R
Sbjct: 67 EEMGGEFITDGWVIDPIDGTGNYLRGTPLWGIAVAYMSAGEPEIGVVAYPALGYTLAART 126
Query: 83 GF------APRASPRQSDVMIVAGTL--TNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
G P P+ + + +AG T A L R+ + + + ++ CA G
Sbjct: 127 GEGLLRNGIPFVRPQPPEHLRIAGVGENTRWDAEELGRLQLTLRQQGWGLAGYRCATIGL 186
Query: 135 YY 136
+
Sbjct: 187 AF 188
>gi|296446747|ref|ZP_06888686.1| hydrogenase (NiFe) small subunit HydA [Methylosinus trichosporium
OB3b]
gi|296255750|gb|EFH02838.1| hydrogenase (NiFe) small subunit HydA [Methylosinus trichosporium
OB3b]
Length = 354
Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 135 KPFVEKLKWMAEDAMALIAWGACASWGCVQAAKPNPTQATPIDKVIKNKPI-IKVPGCPP 193
Query: 162 TAE 164
AE
Sbjct: 194 IAE 196
>gi|288921359|ref|ZP_06415640.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia sp. EUN1f]
gi|288347270|gb|EFC81566.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia sp. EUN1f]
Length = 351
Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---- 153
T++ + P+ V++ G+CA GG + + + G + D
Sbjct: 109 DPQTHQPMPTSTWLDRLAPKALAVLAAGTCATYGGIHAMAGNPTGAMGVPDYLGWDWKSK 168
Query: 154 -----IYVPGCPPTAEALIYGILLLQ 174
+ VPGCP + L I L
Sbjct: 169 AQIPIVCVPGCPVQPDNLSETITYLL 194
>gi|326385678|ref|ZP_08207308.1| uptake hydrogenase accessory protein hupU [Novosphingobium
nitrogenifigens DSM 19370]
gi|326209836|gb|EGD60623.1| uptake hydrogenase accessory protein hupU [Novosphingobium
nitrogenifigens DSM 19370]
Length = 341
Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 33/99 (33%), Gaps = 26/99 (26%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVV--RGCD---- 147
+M G +M + R +V+++GSCA GG + V G
Sbjct: 95 HIMAGTGRPMREMIEGIAR------HATHVVAVGSCAAYGGITAGGGNAVEAGGLAYDGT 148
Query: 148 -------------RIVPVDIYVPGCPPTAEALIYGILLL 173
+PV I + GCP + IL +
Sbjct: 149 APGGLLGAQFRARGGLPV-INIAGCPIHPGWFVDTILQI 186
>gi|146338748|ref|YP_001203796.1| uptake hydrogenase accessory protein HupU [Bradyrhizobium sp.
ORS278]
gi|146191554|emb|CAL75559.1| uptake hydrogenase accessory protein HupU [Bradyrhizobium sp.
ORS278]
Length = 338
Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 30/177 (16%), Positives = 56/177 (31%), Gaps = 62/177 (35%)
Query: 55 LMWMTFGLACCAVEMMQASMPRY--DLERFGFAPRASP---------------------R 91
L C + ++++ + +L + G P
Sbjct: 11 LWLQGASCGGCTMSILESGASGWFDELRQSGIDVIWHPSVSEQTGDEVVDLLEAIRDGRE 70
Query: 92 QSDVMIVAGTLTN--------KMASALRR-----VYDQMPEPRYVISMGSCANGGGYYHY 138
Q D++++ G++ M + R + D P YV+++GSCA GG
Sbjct: 71 QLDLLVLEGSVARGPRLSGRFNMLAGTNRSIYHWLLDLAPLANYVVAVGSCAAYGGI--- 127
Query: 139 SYSVVRGCDRI----------------------VPVDIYVPGCPPTAEALIYGILLL 173
+ + D + +PV I V GC P ++ +L L
Sbjct: 128 PAAGINPTDAVGLQFEGSDAGGALGAGFRSKRGLPV-INVAGCAPHPGWMMETLLAL 183
>gi|321261650|ref|XP_003195544.1| hypothetical protein CGB_H0760W [Cryptococcus gattii WM276]
gi|317462018|gb|ADV23757.1| Hypothetical Protein CGB_H0760W [Cryptococcus gattii WM276]
Length = 419
Score = 35.8 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 17/117 (14%)
Query: 50 ARTGSLMWMTFGLACCAVEMMQASMPRYDLERF-GFAPRASPRQSDVMIVAGTLTNKMAS 108
R S+ + C ++ S+ + D RF GF P + G ++ + +
Sbjct: 307 GRVVSVYPLRKEAMC---DVGALSVSK-DTGRFSGFGRVVKPDYATG-WDLGRISQEHGT 361
Query: 109 ALRRVYDQMPE--------PRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVP 157
+RR + + E +I +C + + Y V G D + VD++VP
Sbjct: 362 LVRRQGENIKEENELKIGDSVQIIPQHAC-LVCACFPWLYVVDDGGDEV--VDVWVP 415
>gi|317485676|ref|ZP_07944547.1| hydrogenase small subunit [Bilophila wadsworthia 3_1_6]
gi|316923041|gb|EFV44256.1| hydrogenase small subunit [Bilophila wadsworthia 3_1_6]
Length = 316
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIVPV----DIYVPGCPPT 162
L +P+ + V++ G+CA GG + + +G + I + GCPP
Sbjct: 144 MLDICGRILPKAKAVVAYGTCAAFGGVQAAKPNPTGAQGVNECFGAKGIKAINIGGCPPN 203
Query: 163 AEALIYGILLLQK 175
L+ ++ +
Sbjct: 204 PLNLVGTLVAFLR 216
>gi|89894984|ref|YP_518471.1| Hup-type Ni,Fe-hydrogenase small subunit [Desulfitobacterium
hafniense Y51]
gi|219669386|ref|YP_002459821.1| hydrogenase (NiFe) small subunit HydA [Desulfitobacterium hafniense
DCB-2]
gi|89334432|dbj|BAE84027.1| Hup-type Ni,Fe-hydrogenase small subunit [Desulfitobacterium
hafniense Y51]
gi|219539646|gb|ACL21385.1| hydrogenase (NiFe) small subunit HydA [Desulfitobacterium hafniense
DCB-2]
Length = 359
Score = 35.8 bits (81), Expect = 2.9, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query: 123 VISMGSCANGG---GYYHYSYSVVRGCDRIV---PVDIYVPGCPPTAEAL 166
VI+ GSCA G Y V RIV PV I VPGCPP AE +
Sbjct: 153 VIAYGSCATNACIQGAYPNPTEAV-PIRRIVKNKPV-IDVPGCPPIAEVI 200
>gi|126732734|ref|ZP_01748529.1| hydrogenase small subunit [Sagittula stellata E-37]
gi|126706730|gb|EBA05801.1| hydrogenase small subunit [Sagittula stellata E-37]
Length = 314
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 23/91 (25%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD---------------- 147
M +R + V+++G+CA GG ++
Sbjct: 77 RSMLDWVRALSAMATH---VVAVGTCATYGGVTSAGENLTDAVGLQYDGAHRGGALGAGF 133
Query: 148 ---RIVPVDIYVPGCPPTAEALIYGILLLQK 175
+PV + V GCP + + +++L +
Sbjct: 134 VAKGGLPV-VNVAGCPTHPDWVTETLMMLAE 163
>gi|71909599|ref|YP_287186.1| Ni-Fe hydrogenase, small subunit:twin-arginine translocation
pathway signal [Dechloromonas aromatica RCB]
gi|71849220|gb|AAZ48716.1| Ni-Fe hydrogenase, small subunit:Twin-arginine translocation
pathway signal [Dechloromonas aromatica RCB]
Length = 363
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ + + + + +IS G+CA+ G + R +++ P+ I VPGCPP
Sbjct: 136 RPFVEVLKETCADAKAIISWGACASYGCVQAAKPNPTRATPVHKVISGKPI-INVPGCPP 194
Query: 162 TAE 164
AE
Sbjct: 195 IAE 197
>gi|20378782|gb|AAM20985.1| hydrogenase small subunit [Azorhizobium caulinodans]
Length = 179
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + +IS GSCA+ G + R ++ P+ I VPGCPP
Sbjct: 80 KPFVDQLKKVSKDAKAIISWGSCASYGCVQAARPNPTRATPVHEVIFDKPI-IKVPGCPP 138
Query: 162 TAE 164
AE
Sbjct: 139 IAE 141
>gi|317485958|ref|ZP_07944813.1| hydrogenase small subunit [Bilophila wadsworthia 3_1_6]
gi|316922731|gb|EFV43962.1| hydrogenase small subunit [Bilophila wadsworthia 3_1_6]
Length = 313
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 10/50 (20%)
Query: 127 GSCANGGGYYHYSYSVVR--GCDRIV-------PVDIYVPGCPPTAEALI 167
G+CA GG + G + PV I +PGCPP + ++
Sbjct: 153 GTCAAYGGIPAGKGNETGAMGVSAFLKKEGIPAPV-INIPGCPPHPDWIV 201
>gi|254281615|ref|ZP_04956583.1| NADH ubiquinone oxidoreductase, 20 kda subunit [gamma
proteobacterium NOR51-B]
gi|219677818|gb|EED34167.1| NADH ubiquinone oxidoreductase, 20 kda subunit [gamma
proteobacterium NOR51-B]
Length = 252
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 23/96 (23%)
Query: 86 PRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY---------- 135
AS D+ +V G++T A L R+ + + ++++G+CA GG
Sbjct: 38 QTASDGPYDLSLVEGSIT--TAQDLERIKTVRRQSKALVTIGACATSGGIQALRNFRDVN 95
Query: 136 -----------YHYSYSVVRGCDRIVPVDIYVPGCP 160
Y + + V VD + GCP
Sbjct: 96 DFLAVVYADPGYIDTLATSTPIADHVAVDFELRGCP 131
>gi|119484425|ref|ZP_01619042.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Lyngbya sp. PCC
8106]
gi|87245257|gb|ABD34837.1| HupS [Lyngbya aestuarii]
gi|119457899|gb|EAW39022.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Lyngbya sp. PCC
8106]
Length = 320
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV---------------VRGCDR 148
M L + +V+++G CA GG S + G D
Sbjct: 91 RPMKDWLSDLSQVAK---FVVAIGDCATYGGIPAMSPNPSESEGLQFLKRQKGGFLGPDY 147
Query: 149 I----VPVDIYVPGCPPTAEAL 166
+ PV I +PGCP + +
Sbjct: 148 LSQAGFPV-INIPGCPAHPDWI 168
>gi|260429169|ref|ZP_05783146.1| uptake hydrogenase small subunit [Citreicella sp. SE45]
gi|260419792|gb|EEX13045.1| uptake hydrogenase small subunit [Citreicella sp. SE45]
Length = 309
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS G+CA+ G + R +++ P+ I VPGCPP
Sbjct: 85 KPFVDQLRHAAEHAKAIISWGACASYGCVQAAKPNPTRATPVHKVITDKPI-IKVPGCPP 143
Query: 162 TAE 164
AE
Sbjct: 144 IAE 146
>gi|240171842|ref|ZP_04750501.1| coenzyme F420-reducing hydrogenase, gamma subunit [Mycobacterium
kansasii ATCC 12478]
Length = 251
Score = 35.8 bits (81), Expect = 3.1, Method: Composition-based stats.
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 25/103 (24%)
Query: 94 DVMIVAGTLT-NKMASALRRVYDQMPEPRYVISMGSCANGGGY----------------- 135
D+ +V G++T +R + +Q + ++++G+CA GG
Sbjct: 52 DISLVEGSVTTRHDEQRIREIREQ---SKILVTIGACATAGGVQALRNFADVAEFTSLVY 108
Query: 136 ----YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
Y + + V VD + GCP L+ + L
Sbjct: 109 ANPEYIDTLATSTPAAAHVKVDYQLHGCPIDRGQLLDTLAALL 151
>gi|284928661|ref|YP_003421183.1| (NiFe) uptake hydrogenase small subunit [cyanobacterium UCYN-A]
gi|284809120|gb|ADB94825.1| (NiFe) uptake hydrogenase small subunit [cyanobacterium UCYN-A]
Length = 320
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGC------------DRI 149
M L + +V+++G CA GG + S G D
Sbjct: 91 RPMKDWLNDLSKVA---GFVVAVGDCATYGGVPAMEPNPSESIGLQFLKRQKGGFLGDDF 147
Query: 150 V-----PVDIYVPGCPPTAEAL 166
+ PV I +PGCP + +
Sbjct: 148 LSQKGFPV-INIPGCPAHPDWI 168
>gi|294634927|ref|ZP_06713446.1| hydrogenase-2 small chain [Edwardsiella tarda ATCC 23685]
gi|291091700|gb|EFE24261.1| hydrogenase-2 small chain [Edwardsiella tarda ATCC 23685]
Length = 372
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|269140344|ref|YP_003297045.1| hydrogenase-1 small subunit [Edwardsiella tarda EIB202]
gi|267986005|gb|ACY85834.1| hydrogenase-1 small subunit [Edwardsiella tarda EIB202]
Length = 471
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 236 RPFIEKLKKAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 294
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 295 IPD-VMSAIIT 304
>gi|291300952|ref|YP_003512230.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290570172|gb|ADD43137.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Stackebrandtia
nassauensis DSM 44728]
Length = 249
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 23/88 (26%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135
DV +V G++T + + R+ + ++S+G+CA GG
Sbjct: 52 DVSLVEGSVTTEAD--VARIGRIRENSKVLVSIGACATAGGVQALRNLGDINEFASIVYA 109
Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCP 160
Y + + V VD + GCP
Sbjct: 110 RPDYIDTLATSTPIASHVEVDYELHGCP 137
>gi|323139221|ref|ZP_08074276.1| hydrogenase (NiFe) small subunit HydA [Methylocystis sp. ATCC
49242]
gi|322395519|gb|EFX98065.1| hydrogenase (NiFe) small subunit HydA [Methylocystis sp. ATCC
49242]
Length = 360
Score = 35.4 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFVEKLKWMSEDAMAIIAWGACASWGCVQAAKPNPTQATPIDKVIRDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|67925903|ref|ZP_00519187.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Crocosphaera
watsonii WH 8501]
gi|67852252|gb|EAM47727.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Crocosphaera
watsonii WH 8501]
Length = 320
Score = 35.4 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGC-------------DR 148
M L + +V+++G CA GG + S G D
Sbjct: 91 RPMKDWLTDLSKVAA---FVVAVGDCATYGGIPAMEPNPSESLGVQFLKRDKGGFLGADY 147
Query: 149 I----VPVDIYVPGCPPTAEAL 166
+ +PV I +PGCP + +
Sbjct: 148 VSQAGLPV-INIPGCPSHPDWI 168
>gi|317488277|ref|ZP_07946843.1| NADH ubiquinone oxidoreductase [Eggerthella sp. 1_3_56FAA]
gi|325830787|ref|ZP_08164171.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Eggerthella sp.
HGA1]
gi|316912617|gb|EFV34160.1| NADH ubiquinone oxidoreductase [Eggerthella sp. 1_3_56FAA]
gi|325487194|gb|EGC89637.1| NADH ubiquinone oxidoreductase, 20 Kd subunit [Eggerthella sp.
HGA1]
Length = 266
Score = 35.4 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 32/128 (25%)
Query: 63 ACCAVEMMQASMPRYDLERFGFA---------PRASPRQSDVMIVAGTLTNKMASALRRV 113
+C ++ + + L+ G P DV I+ G +T + + A R
Sbjct: 29 SCFGCQLQITNAEAHLLDVLGQIDLRYWQLASSDPMPEDFDVAIIEGAVTTEESEATVRS 88
Query: 114 YDQMPEPRYVISMGSCANGGGY-------YHYSYSVV--------------RGCDRIVPV 152
+ + +I++G+CA G + V R ++ V
Sbjct: 89 LRE--KAGAIIAVGACATTAGIPGMAAEGFLERPGQVYDRVPSACGDMVAPRAVGAVIDV 146
Query: 153 DIYVPGCP 160
D V CP
Sbjct: 147 DFEVRACP 154
>gi|308063578|gb|ADO05465.1| Hydrogenase, small subunit [Helicobacter pylori Sat464]
Length = 384
Score = 35.4 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 88 ASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRG 145
P+ ++ + G + + + ++G+C++ GG + + S +
Sbjct: 147 GIPQGTEYFLTQGP---NAETGAKECKKAAQHAAAIFAIGTCSSFGGVQAAYPNPSNAQP 203
Query: 146 CDRIV--PVDIYVPGCPPT 162
+I+ PV I VPGCPP+
Sbjct: 204 LHKIIDKPV-INVPGCPPS 221
>gi|148252066|ref|YP_001236651.1| uptake hydrogenase accessory protein hupU [Bradyrhizobium sp.
BTAi1]
gi|146404239|gb|ABQ32745.1| uptake hydrogenase accessory protein hupU [Bradyrhizobium sp.
BTAi1]
Length = 304
Score = 35.4 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRI------------ 149
M + + +V+++G CA GG + S +G +
Sbjct: 75 RPMRDWVHDLSKVA---NFVVAIGDCATWGGIPATAPNPSESQGLQFLKRSQGGFLGKDY 131
Query: 150 -----VPVDIYVPGCPPTAEAL 166
+PV I VPGCP + +
Sbjct: 132 KSKAGLPV-INVPGCPAHPDWI 152
>gi|167628336|ref|YP_001678835.1| uptake [ni/fe] hydrogenase small subunit [Heliobacterium
modesticaldum Ice1]
gi|167591076|gb|ABZ82824.1| uptake [ni/fe] hydrogenase small subunit [Heliobacterium
modesticaldum Ice1]
Length = 395
Score = 35.4 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTA 163
A+ + ++ + +I+ GSCA G + + I+ P+ I VPGCP A
Sbjct: 164 AVDMLKEEAKHAKAIIAWGSCAVNGCVQAANPNPTGAVPVQDIIKDKPI-INVPGCPAIA 222
Query: 164 EALIYGILL 172
E ++ G++
Sbjct: 223 E-VMAGVIT 230
>gi|332092480|gb|EGI97553.1| uptake hydrogenase small subunit [Shigella boydii 5216-82]
Length = 372
Score = 35.4 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|307354849|ref|YP_003895900.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
petrolearius DSM 11571]
gi|307158082|gb|ADN37462.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanoplanus
petrolearius DSM 11571]
Length = 305
Score = 35.4 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 38/107 (35%)
Query: 90 PRQSDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------Y 136
P D+ V G + + L+ + + ++++G+CA GG +
Sbjct: 47 PEGIDIAFVTGAVRNEENRERLKMI---RKRSKVLVALGTCACYGGVSGLSMLSSNAEIF 103
Query: 137 HYSY---SVVRGCDRIVP------------------VDIYVPGCPPT 162
+ Y + V G D +P +D Y+ GCPP
Sbjct: 104 NKVYRNGATV-GEDGKIPSGVPPFTYRAFAVGDLAMMDYYITGCPPK 149
>gi|56479785|ref|NP_706894.2| hydrogenase-1 small subunit [Shigella flexneri 2a str. 301]
gi|32699534|sp|Q83RW9|MBHS_SHIFL RecName: Full=Hydrogenase-1 small chain; Short=HYD1; AltName:
Full=Membrane-bound hydrogenase 1 small subunit;
AltName: Full=NiFe hydrogenase; Flags: Precursor
gi|56383336|gb|AAN42601.2| hydrogenase-1 small subunit [Shigella flexneri 2a str. 301]
Length = 372
Score = 35.4 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|307700431|ref|ZP_07637470.1| putative Periplasmic [NiFe] hydrogenase small subunit [Mobiluncus
mulieris FB024-16]
gi|307614416|gb|EFN93646.1| putative Periplasmic [NiFe] hydrogenase small subunit [Mobiluncus
mulieris FB024-16]
Length = 328
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 92 QSDVMIVAGTLTNKMA--------SALRRVYDQMPEPR-YVISMGSCANGGGYYHYSYSV 142
Q +++V G++ K + ++V ++ E ++++G+CA G +
Sbjct: 127 QDHILVVNGSIPVKDGGIYCTIGGKSAQQVLEESAENASMILAVGACAVYGSVQAARPNP 186
Query: 143 VR--GCDRIV---PVDIYVPGCPPTAEAL 166
G D I+ PV I V GCPP E +
Sbjct: 187 TGAVGVDEIIKDKPV-INVAGCPPIGEVI 214
>gi|225174994|ref|ZP_03728991.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dethiobacter
alkaliphilus AHT 1]
gi|225169634|gb|EEG78431.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Dethiobacter
alkaliphilus AHT 1]
Length = 254
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 22/91 (24%)
Query: 90 PRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--------------- 134
P D+ V G++ N + R+ + ++++G+CA GG
Sbjct: 50 PGPYDIGFVEGSIVNP--EDIERLKQARRDCGLLVAIGACACHGGLQSLNNGTPQREVEA 107
Query: 135 -YYHYSYSVVR----GCDRIVPVDIYVPGCP 160
Y + V D V +D + GCP
Sbjct: 108 RVYEHPAEVSSLKSYPVDEYVDIDAKLSGCP 138
>gi|194432383|ref|ZP_03064670.1| nickel-dependent hydrogenase 1, small subunit [Shigella dysenteriae
1012]
gi|194419270|gb|EDX35352.1| nickel-dependent hydrogenase 1, small subunit [Shigella dysenteriae
1012]
gi|332095853|gb|EGJ00860.1| uptake hydrogenase small subunit [Shigella dysenteriae 155-74]
Length = 372
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|300902863|ref|ZP_07120810.1| putative Hydrogenase-2 small chain [Escherichia coli MS 84-1]
gi|301302411|ref|ZP_07208542.1| putative Hydrogenase-2 small chain [Escherichia coli MS 124-1]
gi|300405095|gb|EFJ88633.1| putative Hydrogenase-2 small chain [Escherichia coli MS 84-1]
gi|300842250|gb|EFK70010.1| putative Hydrogenase-2 small chain [Escherichia coli MS 124-1]
gi|315258020|gb|EFU37988.1| putative Hydrogenase-2 small chain [Escherichia coli MS 85-1]
Length = 372
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|309701250|emb|CBJ00550.1| hydrogenase-1 small subunit [Escherichia coli ETEC H10407]
Length = 372
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|218548482|ref|YP_002382273.1| hydrogenase 1 small subunit [Escherichia fergusonii ATCC 35469]
gi|218356023|emb|CAQ88639.1| hydrogenase 1, small subunit [Escherichia fergusonii ATCC 35469]
gi|324113704|gb|EGC07679.1| hydrogenase small subunit [Escherichia fergusonii B253]
gi|325496902|gb|EGC94761.1| hydrogenase 1, small subunit [Escherichia fergusonii ECD227]
Length = 372
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|189220401|ref|YP_001941041.1| coenzyme F420-reducing hydrogenase, gamma subunit
[Methylacidiphilum infernorum V4]
gi|189187259|gb|ACD84444.1| Coenzyme F420-reducing hydrogenase, gamma subunit
[Methylacidiphilum infernorum V4]
Length = 250
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 39/123 (31%)
Query: 59 TFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMP 118
F ++ + + P YD+ +V G++T A ++ D
Sbjct: 32 HFEISYFLEASSKVASPPYDIS----------------LVEGSIT--TEEAKHKIMDIRS 73
Query: 119 EPRYVISMGSCANGGGY-----------YHYS----YSVVR------GCDRIVPVDIYVP 157
RY++++G+CA GG + S V+ V VD +
Sbjct: 74 SSRYLVTIGACATAGGIQALRNFASLESFKQSVYPRPEVIDVLPSSLPISHFVKVDYELQ 133
Query: 158 GCP 160
GCP
Sbjct: 134 GCP 136
>gi|170769955|ref|ZP_02904408.1| nickel-dependent hydrogenase 1, small subunit [Escherichia albertii
TW07627]
gi|170121139|gb|EDS90070.1| nickel-dependent hydrogenase 1, small subunit [Escherichia albertii
TW07627]
Length = 372
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|193066312|ref|ZP_03047362.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
E22]
gi|194429830|ref|ZP_03062343.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
B171]
gi|209918225|ref|YP_002292309.1| hydrogenase-1 small subunit [Escherichia coli SE11]
gi|218553559|ref|YP_002386472.1| hydrogenase 1 small subunit [Escherichia coli IAI1]
gi|218688868|ref|YP_002397080.1| hydrogenase 1, small subunit [Escherichia coli ED1a]
gi|218700508|ref|YP_002408137.1| hydrogenase 1, small subunit [Escherichia coli IAI39]
gi|260843220|ref|YP_003220998.1| hydrogenase 1, small subunit [Escherichia coli O103:H2 str. 12009]
gi|300819215|ref|ZP_07099416.1| putative Hydrogenase-2 small chain [Escherichia coli MS 107-1]
gi|192926019|gb|EDV80663.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
E22]
gi|194412112|gb|EDX28421.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
B171]
gi|195182802|dbj|BAG66380.1| Predicted Hydrogenasae-1 small chain precursor [Escherichia coli
O111:H-]
gi|209911484|dbj|BAG76558.1| hydrogenase-1 small subunit [Escherichia coli SE11]
gi|218360327|emb|CAQ97877.1| hydrogenase 1, small subunit [Escherichia coli IAI1]
gi|218370494|emb|CAR18301.1| hydrogenase 1, small subunit [Escherichia coli IAI39]
gi|218426432|emb|CAR07258.1| hydrogenase 1, small subunit [Escherichia coli ED1a]
gi|257758367|dbj|BAI29864.1| hydrogenase 1, small subunit [Escherichia coli O103:H2 str. 12009]
gi|300528234|gb|EFK49296.1| putative Hydrogenase-2 small chain [Escherichia coli MS 107-1]
gi|323158196|gb|EFZ44289.1| uptake hydrogenase small subunit [Escherichia coli E128010]
gi|323185317|gb|EFZ70681.1| uptake hydrogenase small subunit [Escherichia coli 1357]
gi|323947239|gb|EGB43247.1| hydrogenase small [Escherichia coli H120]
gi|324019138|gb|EGB88357.1| putative Hydrogenase-2 small chain [Escherichia coli MS 117-3]
Length = 372
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|16128938|ref|NP_415491.1| hydrogenase 1, small subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|30062510|ref|NP_836681.1| hydrogenase-1 small subunit [Shigella flexneri 2a str. 2457T]
gi|82544705|ref|YP_408652.1| hydrogenase 1 small subunit [Shigella boydii Sb227]
gi|82776262|ref|YP_402611.1| hydrogenase-1 small subunit [Shigella dysenteriae Sd197]
gi|89107821|ref|AP_001601.1| hydrogenase 1, small subunit [Escherichia coli str. K-12 substr.
W3110]
gi|110641161|ref|YP_668891.1| hydrogenase-1 small chain precursor [Escherichia coli 536]
gi|157160491|ref|YP_001457809.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli HS]
gi|170020628|ref|YP_001725582.1| hydrogenase (NiFe) small subunit HydA [Escherichia coli ATCC 8739]
gi|170080629|ref|YP_001729949.1| hydrogenase 1, small subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|170683371|ref|YP_001744196.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
SMS-3-5]
gi|187732931|ref|YP_001880830.1| nickel-dependent hydrogenase, small subunit [Shigella boydii CDC
3083-94]
gi|188493889|ref|ZP_03001159.1| nickel-dependent hydrogenase, small subunit [Escherichia coli
53638]
gi|191166540|ref|ZP_03028369.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
B7A]
gi|191172378|ref|ZP_03033919.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
F11]
gi|193070079|ref|ZP_03051026.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
E110019]
gi|194438066|ref|ZP_03070159.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
101-1]
gi|215486089|ref|YP_002328520.1| hydrogenase 1, small subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|218694505|ref|YP_002402172.1| hydrogenase 1, small subunit [Escherichia coli 55989]
gi|218704396|ref|YP_002411915.1| hydrogenase 1, small subunit [Escherichia coli UMN026]
gi|227884069|ref|ZP_04001874.1| hydrogenase-1 small chain precursor [Escherichia coli 83972]
gi|238900229|ref|YP_002926025.1| hydrogenase 1, small subunit [Escherichia coli BW2952]
gi|253773999|ref|YP_003036830.1| hydrogenase (NiFe) small subunit HydA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161085|ref|YP_003044193.1| hydrogenase 1, small subunit [Escherichia coli B str. REL606]
gi|256018770|ref|ZP_05432635.1| hydrogenase-1 small subunit [Shigella sp. D9]
gi|256023327|ref|ZP_05437192.1| hydrogenase-1 small subunit [Escherichia sp. 4_1_40B]
gi|260854677|ref|YP_003228568.1| hydrogenase 1, small subunit [Escherichia coli O26:H11 str. 11368]
gi|260867181|ref|YP_003233583.1| hydrogenase 1, small subunit [Escherichia coli O111:H- str. 11128]
gi|300825224|ref|ZP_07105312.1| putative Hydrogenase-2 small chain [Escherichia coli MS 119-7]
gi|300896352|ref|ZP_07114894.1| putative Hydrogenase-2 small chain [Escherichia coli MS 198-1]
gi|300920986|ref|ZP_07137375.1| putative Hydrogenase-2 small chain [Escherichia coli MS 115-1]
gi|300925343|ref|ZP_07141232.1| putative Hydrogenase-2 small chain [Escherichia coli MS 182-1]
gi|300929674|ref|ZP_07145132.1| putative Hydrogenase-2 small chain [Escherichia coli MS 187-1]
gi|300937674|ref|ZP_07152480.1| putative Hydrogenase-2 small chain [Escherichia coli MS 21-1]
gi|300949654|ref|ZP_07163639.1| putative Hydrogenase-2 small chain [Escherichia coli MS 116-1]
gi|300955370|ref|ZP_07167748.1| putative Hydrogenase-2 small chain [Escherichia coli MS 175-1]
gi|300978261|ref|ZP_07174209.1| putative Hydrogenase-2 small chain [Escherichia coli MS 45-1]
gi|300982833|ref|ZP_07176316.1| putative Hydrogenase-2 small chain [Escherichia coli MS 200-1]
gi|301023100|ref|ZP_07186907.1| putative Hydrogenase-2 small chain [Escherichia coli MS 69-1]
gi|301047767|ref|ZP_07194823.1| putative Hydrogenase-2 small chain [Escherichia coli MS 185-1]
gi|301327194|ref|ZP_07220460.1| putative Hydrogenase-2 small chain [Escherichia coli MS 78-1]
gi|301643497|ref|ZP_07243543.1| putative Hydrogenase-2 small chain [Escherichia coli MS 146-1]
gi|306812582|ref|ZP_07446775.1| hydrogenase-1 small subunit [Escherichia coli NC101]
gi|307137602|ref|ZP_07496958.1| hydrogenase-1 small subunit [Escherichia coli H736]
gi|309786709|ref|ZP_07681329.1| uptake hydrogenase small subunit [Shigella dysenteriae 1617]
gi|309795039|ref|ZP_07689459.1| putative Hydrogenase-2 small chain [Escherichia coli MS 145-7]
gi|312968969|ref|ZP_07783176.1| uptake hydrogenase small subunit [Escherichia coli 2362-75]
gi|312971103|ref|ZP_07785282.1| uptake hydrogenase small subunit [Escherichia coli 1827-70]
gi|331657038|ref|ZP_08358000.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
TA206]
gi|331662385|ref|ZP_08363308.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
TA143]
gi|331667362|ref|ZP_08368226.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
TA271]
gi|331682477|ref|ZP_08383096.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
H299]
gi|62901695|sp|P69739|MBHS_ECOLI RecName: Full=Hydrogenase-1 small chain; Short=HYD1; AltName:
Full=Membrane-bound hydrogenase 1 small subunit;
AltName: Full=NiFe hydrogenase; Flags: Precursor
gi|62901696|sp|P69740|MBHS_ECOL6 RecName: Full=Hydrogenase-1 small chain; Short=HYD1; AltName:
Full=Membrane-bound hydrogenase 1 small subunit;
AltName: Full=NiFe hydrogenase; Flags: Precursor
gi|146420|gb|AAA23997.1| hydrogenase-1 small subunit (hyaA) precursor [Escherichia coli]
gi|1787206|gb|AAC74057.1| hydrogenase 1, small subunit [Escherichia coli str. K-12 substr.
MG1655]
gi|30040756|gb|AAP16487.1| hydrogenase-1 small subunit [Shigella flexneri 2a str. 2457T]
gi|81240410|gb|ABB61120.1| hydrogenase-1 small subunit [Shigella dysenteriae Sd197]
gi|81246116|gb|ABB66824.1| hydrogenase 1 small subunit [Shigella boydii Sb227]
gi|85674806|dbj|BAA35737.2| hydrogenase 1, small subunit [Escherichia coli str. K12 substr.
W3110]
gi|110342753|gb|ABG68990.1| hydrogenase-1 small chain precursor [Escherichia coli 536]
gi|157066171|gb|ABV05426.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli HS]
gi|169755556|gb|ACA78255.1| hydrogenase (NiFe) small subunit HydA [Escherichia coli ATCC 8739]
gi|169888464|gb|ACB02171.1| hydrogenase 1, small subunit [Escherichia coli str. K-12 substr.
DH10B]
gi|170521089|gb|ACB19267.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
SMS-3-5]
gi|187429923|gb|ACD09197.1| nickel-dependent hydrogenase, small subunit [Shigella boydii CDC
3083-94]
gi|188489088|gb|EDU64191.1| nickel-dependent hydrogenase, small subunit [Escherichia coli
53638]
gi|190903345|gb|EDV63065.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
B7A]
gi|190907262|gb|EDV66860.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
F11]
gi|192956676|gb|EDV87132.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
E110019]
gi|194423002|gb|EDX38996.1| nickel-dependent hydrogenase 1, small subunit [Escherichia coli
101-1]
gi|215264161|emb|CAS08505.1| hydrogenase 1, small subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|218351237|emb|CAU96941.1| hydrogenase 1, small subunit [Escherichia coli 55989]
gi|218431493|emb|CAR12371.1| hydrogenase 1, small subunit [Escherichia coli UMN026]
gi|222032695|emb|CAP75434.1| hydrogenase-1 small chain [Escherichia coli LF82]
gi|227838821|gb|EEJ49287.1| hydrogenase-1 small chain precursor [Escherichia coli 83972]
gi|238861448|gb|ACR63446.1| hydrogenase 1, small subunit [Escherichia coli BW2952]
gi|242376786|emb|CAQ31499.1| hydrogenase 1, small subunit, subunit of hydrogenase 1 [Escherichia
coli BL21(DE3)]
gi|253325043|gb|ACT29645.1| hydrogenase (NiFe) small subunit HydA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972986|gb|ACT38657.1| hydrogenase 1, small subunit [Escherichia coli B str. REL606]
gi|253977200|gb|ACT42870.1| hydrogenase 1, small subunit [Escherichia coli BL21(DE3)]
gi|257753326|dbj|BAI24828.1| hydrogenase 1, small subunit [Escherichia coli O26:H11 str. 11368]
gi|257763537|dbj|BAI35032.1| hydrogenase 1, small subunit [Escherichia coli O111:H- str. 11128]
gi|260449883|gb|ACX40305.1| hydrogenase (NiFe) small subunit HydA [Escherichia coli DH1]
gi|281178096|dbj|BAI54426.1| hydrogenase-1 small subunit [Escherichia coli SE15]
gi|281600336|gb|ADA73320.1| Hydrogenase-1 small chain precursor [Shigella flexneri 2002017]
gi|284920816|emb|CBG33879.1| hydrogenase-1 small subunit [Escherichia coli 042]
gi|300300376|gb|EFJ56761.1| putative Hydrogenase-2 small chain [Escherichia coli MS 185-1]
gi|300307043|gb|EFJ61563.1| putative Hydrogenase-2 small chain [Escherichia coli MS 200-1]
gi|300317726|gb|EFJ67510.1| putative Hydrogenase-2 small chain [Escherichia coli MS 175-1]
gi|300359763|gb|EFJ75633.1| putative Hydrogenase-2 small chain [Escherichia coli MS 198-1]
gi|300397221|gb|EFJ80759.1| putative Hydrogenase-2 small chain [Escherichia coli MS 69-1]
gi|300409726|gb|EFJ93264.1| putative Hydrogenase-2 small chain [Escherichia coli MS 45-1]
gi|300412065|gb|EFJ95375.1| putative Hydrogenase-2 small chain [Escherichia coli MS 115-1]
gi|300418535|gb|EFK01846.1| putative Hydrogenase-2 small chain [Escherichia coli MS 182-1]
gi|300450949|gb|EFK14569.1| putative Hydrogenase-2 small chain [Escherichia coli MS 116-1]
gi|300457322|gb|EFK20815.1| putative Hydrogenase-2 small chain [Escherichia coli MS 21-1]
gi|300462375|gb|EFK25868.1| putative Hydrogenase-2 small chain [Escherichia coli MS 187-1]
gi|300522306|gb|EFK43375.1| putative Hydrogenase-2 small chain [Escherichia coli MS 119-7]
gi|300846227|gb|EFK73987.1| putative Hydrogenase-2 small chain [Escherichia coli MS 78-1]
gi|301078104|gb|EFK92910.1| putative Hydrogenase-2 small chain [Escherichia coli MS 146-1]
gi|305853345|gb|EFM53784.1| hydrogenase-1 small subunit [Escherichia coli NC101]
gi|307552803|gb|ADN45578.1| hydrogenase-1 small subunit [Escherichia coli ABU 83972]
gi|308121343|gb|EFO58605.1| putative Hydrogenase-2 small chain [Escherichia coli MS 145-7]
gi|308925402|gb|EFP70889.1| uptake hydrogenase small subunit [Shigella dysenteriae 1617]
gi|310336864|gb|EFQ02031.1| uptake hydrogenase small subunit [Escherichia coli 1827-70]
gi|312286371|gb|EFR14284.1| uptake hydrogenase small subunit [Escherichia coli 2362-75]
gi|312945484|gb|ADR26311.1| hydrogenase-1 small subunit [Escherichia coli O83:H1 str. NRG 857C]
gi|313650777|gb|EFS15178.1| uptake hydrogenase small subunit [Shigella flexneri 2a str. 2457T]
gi|315135621|dbj|BAJ42780.1| hydrogenase-1 small chain [Escherichia coli DH1]
gi|315296270|gb|EFU55576.1| putative Hydrogenase-2 small chain [Escherichia coli MS 16-3]
gi|315619168|gb|EFU99748.1| uptake hydrogenase small subunit [Escherichia coli 3431]
gi|320196539|gb|EFW71162.1| Uptake hydrogenase small subunit precursor [Escherichia coli
WV_060327]
gi|320200201|gb|EFW74789.1| Uptake hydrogenase small subunit precursor [Escherichia coli
EC4100B]
gi|323157471|gb|EFZ43581.1| uptake hydrogenase small subunit [Escherichia coli EPECa14]
gi|323174920|gb|EFZ60535.1| uptake hydrogenase small subunit [Escherichia coli LT-68]
gi|323175894|gb|EFZ61488.1| uptake hydrogenase small subunit [Escherichia coli 1180]
gi|323190629|gb|EFZ75899.1| uptake hydrogenase small subunit [Escherichia coli RN587/1]
gi|323938076|gb|EGB34338.1| hydrogenase small [Escherichia coli E1520]
gi|323942886|gb|EGB39051.1| hydrogenase small subunit [Escherichia coli E482]
gi|323962857|gb|EGB58432.1| hydrogenase small subunit [Escherichia coli H489]
gi|323973153|gb|EGB68345.1| hydrogenase small subunit [Escherichia coli TA007]
gi|324009905|gb|EGB79124.1| putative Hydrogenase-2 small chain [Escherichia coli MS 57-2]
gi|324012886|gb|EGB82105.1| putative Hydrogenase-2 small chain [Escherichia coli MS 60-1]
gi|324117165|gb|EGC11073.1| hydrogenase small subunit [Escherichia coli E1167]
gi|330910746|gb|EGH39256.1| uptake hydrogenase small subunit precursor [Escherichia coli AA86]
gi|331055286|gb|EGI27295.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
TA206]
gi|331060807|gb|EGI32771.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
TA143]
gi|331064947|gb|EGI36842.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
TA271]
gi|331080108|gb|EGI51287.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
H299]
gi|332342415|gb|AEE55749.1| hydrogenase, small subunit HyaA [Escherichia coli UMNK88]
gi|332759068|gb|EGJ89378.1| uptake hydrogenase small subunit [Shigella flexneri 4343-70]
gi|332759992|gb|EGJ90293.1| uptake hydrogenase small subunit [Shigella flexneri 2747-71]
gi|332762756|gb|EGJ93019.1| uptake hydrogenase small subunit [Shigella flexneri K-671]
gi|332767766|gb|EGJ97957.1| uptake hydrogenase small subunit [Shigella flexneri 2930-71]
gi|333006172|gb|EGK25681.1| uptake hydrogenase small subunit [Shigella flexneri K-218]
gi|333020038|gb|EGK39309.1| uptake hydrogenase small subunit [Shigella flexneri K-304]
Length = 372
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|323967219|gb|EGB62643.1| hydrogenase small subunit [Escherichia coli M863]
gi|323976649|gb|EGB71737.1| hydrogenase small subunit [Escherichia coli TW10509]
gi|327253370|gb|EGE65008.1| uptake hydrogenase small subunit [Escherichia coli STEC_7v]
Length = 372
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|320330392|gb|EFW86371.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330874117|gb|EGH08266.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 247
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 12/122 (9%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMP---RYDLERF 82
+ E+ G+++ +D + R L + ++ E+ + P R
Sbjct: 67 EEMGGELITDGWVIDPIDGTGNYLRGTPLWGIAVAYMSAGEPEIGVVAYPALGYTLAART 126
Query: 83 G------FAPRASPRQSDVMIVAGTL--TNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
G P P+ + + +AG T A + +++ + + ++ CA G
Sbjct: 127 GDGLLRNGVPFVRPQPPEHLRIAGVGENTRWDAEEMGKLHLSLRRQGWGLAGYRCATIGL 186
Query: 135 YY 136
+
Sbjct: 187 AF 188
>gi|281341356|gb|EFB16940.1| hypothetical protein PANDA_012745 [Ailuropoda melanoleuca]
Length = 60
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 34 THKGFLVTSVDQLVTWARTGSLMWMTFGLACCAVEMMQ 71
+ ++V +D L+ WAR S A C +
Sbjct: 22 SRGEYVVAKLDDLINWARRVSPDPSCVLWASCHMHTHA 59
>gi|257791008|ref|YP_003181614.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eggerthella lenta
DSM 2243]
gi|257474905|gb|ACV55225.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Eggerthella lenta
DSM 2243]
Length = 261
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 32/128 (25%)
Query: 63 ACCAVEMMQASMPRYDLERFGFA---------PRASPRQSDVMIVAGTLTNKMASALRRV 113
+C ++ + + L+ G P DV I+ G +T + + A R
Sbjct: 24 SCFGCQLQITNAEAHLLDVLGQIDLRYWQLASSDPMPEDFDVAIIEGAVTTEESEATVRS 83
Query: 114 YDQMPEPRYVISMGSCANGGGY-------YHYSYSVV--------------RGCDRIVPV 152
+ + +I++G+CA G + V R ++ V
Sbjct: 84 LRE--KAGAIIAVGACATTAGIPGMAAEGFLERPGQVYDRVPSACGDMVAPRAVGAVIDV 141
Query: 153 DIYVPGCP 160
D V CP
Sbjct: 142 DFEVRACP 149
>gi|332279846|ref|ZP_08392259.1| hydrogenase-1 small chain [Shigella sp. D9]
gi|332102198|gb|EGJ05544.1| hydrogenase-1 small chain [Shigella sp. D9]
Length = 381
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 147 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 205
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 206 IPD-VMSAIIT 215
>gi|26246998|ref|NP_753038.1| hydrogenase-1 small chain [Escherichia coli CFT073]
gi|293404272|ref|ZP_06648266.1| hydrogenase-1 small chain [Escherichia coli FVEC1412]
gi|293414251|ref|ZP_06656900.1| hydrogenase small subunit [Escherichia coli B185]
gi|298380055|ref|ZP_06989660.1| hydrogenase small subunit [Escherichia coli FVEC1302]
gi|331646233|ref|ZP_08347336.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
M605]
gi|331672507|ref|ZP_08373296.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
TA280]
gi|331676762|ref|ZP_08377458.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
H591]
gi|26107398|gb|AAN79581.1|AE016758_185 Hydrogenase-1 small chain precursor [Escherichia coli CFT073]
gi|291428858|gb|EFF01883.1| hydrogenase-1 small chain [Escherichia coli FVEC1412]
gi|291434309|gb|EFF07282.1| hydrogenase small subunit [Escherichia coli B185]
gi|298279753|gb|EFI21261.1| hydrogenase small subunit [Escherichia coli FVEC1302]
gi|320187182|gb|EFW61883.1| Uptake hydrogenase small subunit precursor [Shigella flexneri CDC
796-83]
gi|331044985|gb|EGI17112.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
M605]
gi|331070150|gb|EGI41516.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
TA280]
gi|331075451|gb|EGI46749.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
H591]
Length = 381
Score = 35.4 bits (80), Expect = 3.6, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 147 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 205
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 206 IPD-VMSAIIT 215
>gi|320178586|gb|EFW53551.1| Uptake hydrogenase small subunit precursor [Shigella boydii ATCC
9905]
Length = 381
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 147 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 205
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 206 IPD-VMSAIIT 215
>gi|317181945|dbj|BAJ59729.1| hydrogenase, small subunit [Helicobacter pylori F57]
gi|332673568|gb|AEE70385.1| quinone-reactive Ni/Fe-hydrogenase [Helicobacter pylori 83]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|317180404|dbj|BAJ58190.1| hydrogenase, small subunit [Helicobacter pylori F32]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|317179005|dbj|BAJ56793.1| hydrogenase, small subunit [Helicobacter pylori F30]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|317177537|dbj|BAJ55326.1| hydrogenase, small subunit [Helicobacter pylori F16]
Length = 385
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|317012447|gb|ADU83055.1| Quinone-reactive Ni/Fe hydrogenase small subunit [Helicobacter
pylori Lithuania75]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|317010851|gb|ADU84598.1| Quinone-reactive Ni/Fe hydrogenase small subunit (Quinone-reactive
Ni/Fe-hydrogenase small chain precursor)(Membrane-bound)
[Helicobacter pylori SouthAfrica7]
Length = 385
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|317009354|gb|ADU79934.1| Quinone-reactive Ni/Fe hydrogenase small subunit [Helicobacter
pylori India7]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|311279772|ref|YP_003942003.1| hydrogenase (NiFe) small subunit HydA [Enterobacter cloacae SCF1]
gi|308748967|gb|ADO48719.1| hydrogenase (NiFe) small subunit HydA [Enterobacter cloacae SCF1]
Length = 375
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD--RIVP--VDIYVPGCPPT 162
+ + D VI++GSCA GG + ++P I +PGCPP
Sbjct: 133 KPIVEHIRDAAEHAAAVIAIGSCAAWGGVAASGVNPTGAVSLQDVLPGKTVINIPGCPPN 192
Query: 163 A 163
Sbjct: 193 P 193
>gi|308182792|ref|YP_003926919.1| quinone-reactive Ni/Fe hydrogenase HydA [Helicobacter pylori
PeCan4]
gi|308064977|gb|ADO06869.1| quinone-reactive Ni/Fe hydrogenase HydA [Helicobacter pylori
PeCan4]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|308061961|gb|ADO03849.1| Hydrogenase, small subunit [Helicobacter pylori Cuz20]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|308184417|ref|YP_003928550.1| Quinone-reactive Ni/Fe hydrogenase small subunit (Quinone-reactive
Ni/Fe-hydrogenase small chain precursor) [Helicobacter
pylori SJM180]
gi|308060337|gb|ADO02233.1| Quinone-reactive Ni/Fe hydrogenase small subunit (Quinone-reactive
Ni/Fe-hydrogenase small chain precursor) [Helicobacter
pylori SJM180]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|307311642|ref|ZP_07591282.1| hydrogenase (NiFe) small subunit HydA [Escherichia coli W]
gi|306908197|gb|EFN38696.1| hydrogenase (NiFe) small subunit HydA [Escherichia coli W]
gi|315060256|gb|ADT74583.1| hydrogenase 1, small subunit [Escherichia coli W]
gi|323379184|gb|ADX51452.1| hydrogenase (NiFe) small subunit HydA [Escherichia coli KO11]
Length = 372
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|315586688|gb|ADU41069.1| hydrogenase (NiFe) small subunit HydA [Helicobacter pylori 35A]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|297379831|gb|ADI34718.1| hydrogenase (NiFe) small subunit (hydA) [Helicobacter pylori v225d]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|261839541|gb|ACX99306.1| hydrogenase small chain [Helicobacter pylori 52]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|261838128|gb|ACX97894.1| small subunit of hydrogen uptake-like hydrogenase [Helicobacter
pylori 51]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|217031997|ref|ZP_03437498.1| hypothetical protein HPB128_187g24 [Helicobacter pylori B128]
gi|298736326|ref|YP_003728852.1| quinone-reactive Ni/Fe hydrogenase small subunit [Helicobacter
pylori B8]
gi|216946307|gb|EEC24913.1| hypothetical protein HPB128_187g24 [Helicobacter pylori B128]
gi|298355516|emb|CBI66388.1| Quinone-reactive Ni/Fe hydrogenase, small subunit (HydA)
[Helicobacter pylori B8]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|217034646|ref|ZP_03440052.1| hypothetical protein HP9810_875g12 [Helicobacter pylori 98-10]
gi|216942894|gb|EEC22383.1| hypothetical protein HP9810_875g12 [Helicobacter pylori 98-10]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|210134837|ref|YP_002301276.1| quinone-reactive Ni/Fe hydrogenase HydA [Helicobacter pylori P12]
gi|210132805|gb|ACJ07796.1| quinone-reactive Ni/Fe hydrogenase HydA [Helicobacter pylori P12]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|208434552|ref|YP_002266218.1| quinone-reactive Ni/Fe hydrogenase [Helicobacter pylori G27]
gi|254779382|ref|YP_003057487.1| Quinone-reactive Ni/Fe hydrogenase small subunit (Quinone-reactive
Ni/Fe-hydrogenase small chain precursor)(Membrane-bound
hydrogenase small subunit) (Hydrogen:quinone
oxidoreductase) [Helicobacter pylori B38]
gi|208432481|gb|ACI27352.1| quinone-reactive Ni/Fe hydrogenase [Helicobacter pylori G27]
gi|254001293|emb|CAX29270.1| Quinone-reactive Ni/Fe hydrogenase small subunit (Quinone-reactive
Ni/Fe-hydrogenase small chain precursor)(Membrane-bound
hydrogenase small subunit) (Hydrogen:quinone
oxidoreductase) [Helicobacter pylori B38]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|207092107|ref|ZP_03239894.1| quinone-reactive Ni/Fe hydrogenase HydA [Helicobacter pylori
HPKX_438_AG0C1]
Length = 332
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|109947312|ref|YP_664540.1| hydrogenase small chain [Helicobacter acinonychis str. Sheeba]
gi|109714533|emb|CAJ99541.1| hydrogenase small chain [Helicobacter acinonychis str. Sheeba]
Length = 385
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|108563039|ref|YP_627355.1| quinone-reactive Ni/Fe hydrogenase HydA [Helicobacter pylori HPAG1]
gi|107836812|gb|ABF84681.1| quinone-reactive Ni/Fe hydrogenase HydA [Helicobacter pylori HPAG1]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|15645255|ref|NP_207425.1| quinone-reactive Ni/Fe hydrogenase, small subunit (hydA)
[Helicobacter pylori 26695]
gi|2313749|gb|AAD07691.1| quinone-reactive Ni/Fe hydrogenase, small subunit (hydA)
[Helicobacter pylori 26695]
Length = 384
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 126 MGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
+G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 182 IGTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|315291173|gb|EFU50533.1| putative Hydrogenase-2 small chain [Escherichia coli MS 153-1]
Length = 372
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|157155331|ref|YP_001462203.1| nickel-dependent hydrogenase, small subunit [Escherichia coli
E24377A]
gi|157077361|gb|ABV17069.1| nickel-dependent hydrogenase, small subunit [Escherichia coli
E24377A]
Length = 372
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|301022538|ref|ZP_07186411.1| putative Hydrogenase-2 small chain [Escherichia coli MS 196-1]
gi|331641500|ref|ZP_08342635.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
H736]
gi|331651996|ref|ZP_08353015.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
M718]
gi|299881201|gb|EFI89412.1| putative Hydrogenase-2 small chain [Escherichia coli MS 196-1]
gi|331038298|gb|EGI10518.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
H736]
gi|331050274|gb|EGI22332.1| hydrogenase-1 small chain (NiFe hydrogenase)(Membrane-bound
hydrogenase 1 small subunit) (HYD1) [Escherichia coli
M718]
Length = 381
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 147 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 205
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 206 IPD-VMSAIIT 215
>gi|288961726|ref|YP_003452036.1| hydrogenase small subunit [Azospirillum sp. B510]
gi|288914006|dbj|BAI75492.1| hydrogenase small subunit [Azospirillum sp. B510]
Length = 357
Score = 35.4 bits (80), Expect = 3.7, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + +IS GSCA+ G + R ++ P+ I VPGCPP
Sbjct: 138 KPFVDQLRKVAKDAKAIISWGSCASFGCVQAARPNPTRATPVHEVITDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|218557870|ref|YP_002390783.1| hydrogenase 1, small subunit [Escherichia coli S88]
gi|218364639|emb|CAR02325.1| hydrogenase 1, small subunit [Escherichia coli S88]
gi|294494106|gb|ADE92862.1| nickel-dependent hydrogenase, small subunit [Escherichia coli
IHE3034]
gi|307627609|gb|ADN71913.1| hydrogenase-1 small subunit [Escherichia coli UM146]
gi|315287583|gb|EFU46989.1| putative Hydrogenase-2 small chain [Escherichia coli MS 110-3]
gi|323953326|gb|EGB49192.1| hydrogenase small subunit [Escherichia coli H252]
gi|323958271|gb|EGB53980.1| hydrogenase small subunit [Escherichia coli H263]
Length = 372
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|91210069|ref|YP_540055.1| hydrogenase-1 small chain [Escherichia coli UTI89]
gi|117623181|ref|YP_852094.1| hydrogenase 1, small subunit [Escherichia coli APEC O1]
gi|237707044|ref|ZP_04537525.1| hydrogenase-1 small chain [Escherichia sp. 3_2_53FAA]
gi|91071643|gb|ABE06524.1| hydrogenase-1 small chain precursor [Escherichia coli UTI89]
gi|115512305|gb|ABJ00380.1| hydrogenase 1, small subunit [Escherichia coli APEC O1]
gi|226898254|gb|EEH84513.1| hydrogenase-1 small chain [Escherichia sp. 3_2_53FAA]
Length = 381
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 147 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 205
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 206 IPD-VMSAIIT 215
>gi|1498174|dbj|BAA13222.1| membrane-bound hydrogenase small subunit precursor [Pseudomonas
hydrogenovora]
Length = 363
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + + +IS GSCA+ G + + +++ P+ I VPGCPP
Sbjct: 136 RPFVEQLKRVSADAKAIISWGSCASWGCVQAAKPNPTQATPVHKVITDKPI-IKVPGCPP 194
Query: 162 TAE 164
AE
Sbjct: 195 IAE 197
>gi|297617287|ref|YP_003702446.1| hypothetical protein Slip_1104 [Syntrophothermus lipocalidus DSM
12680]
gi|297145124|gb|ADI01881.1| protein of unknown function DUF362 [Syntrophothermus lipocalidus
DSM 12680]
Length = 585
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 152 VDIYVPGCPPTAEALIYGI 170
V I++PGCPP E +I G+
Sbjct: 533 VGIHLPGCPPHTEVIIDGV 551
>gi|260430117|ref|ZP_05784092.1| putative [NiFe] hydrogenase delta subunit containing protein
[Citreicella sp. SE45]
gi|260419040|gb|EEX12295.1| putative [NiFe] hydrogenase delta subunit containing protein
[Citreicella sp. SE45]
Length = 255
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 23/95 (24%)
Query: 87 RASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY----------- 135
R +P D+ +V G++T A + R+ D + R ++++G+CA GG
Sbjct: 46 RMAPGPYDLSLVEGSIT--TADDVARIKDIRDQSRTLVAIGACATAGGIQALRNTADVAE 103
Query: 136 ----------YHYSYSVVRGCDRIVPVDIYVPGCP 160
Y + + V VD+ + GCP
Sbjct: 104 WTRLVYPRPEYIETLATSTAIADHVRVDLELHGCP 138
>gi|322505636|emb|CAM40738.2| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 430
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
YV+++ +C GG +Y S SVV D +PV
Sbjct: 17 YVLALKACCTGGDHYDCSESVVGDVDSHLPV 47
>gi|154344064|ref|XP_001567976.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 430
Score = 35.4 bits (80), Expect = 3.8, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 122 YVISMGSCANGGGYYHYSYSVVRGCDRIVPV 152
YV+++ +C GG +Y S SVV D +PV
Sbjct: 17 YVLALKACCTGGDHYDCSESVVGDVDSHLPV 47
>gi|293409351|ref|ZP_06652927.1| uptake hydrogenase small subunit [Escherichia coli B354]
gi|291469819|gb|EFF12303.1| uptake hydrogenase small subunit [Escherichia coli B354]
Length = 383
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 149 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 207
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 208 IPD-VMSAIIT 217
>gi|226306137|ref|YP_002766097.1| NiFe hydrogenase small subunit [Rhodococcus erythropolis PR4]
gi|226185254|dbj|BAH33358.1| putative NiFe hydrogenase small subunit [Rhodococcus erythropolis
PR4]
Length = 376
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 13/69 (18%)
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRI----------VPVDIYVPGCPPTAEA 165
P+ V+++G+CA GG + + + G +P+ + VPGCP +
Sbjct: 157 PKATAVVAVGTCATYGGIHAMAGNPTGAMGVPDYLGWTWKSKAGIPI-VCVPGCPIQPDN 215
Query: 166 LIYGILLLQ 174
L + L
Sbjct: 216 LSETLTYLL 224
>gi|296446749|ref|ZP_06888688.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus
trichosporium OB3b]
gi|296255752|gb|EFH02840.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methylosinus
trichosporium OB3b]
Length = 342
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 24/110 (21%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------- 135
G R ++AGT M +R + P Y +++GSCA GG
Sbjct: 78 GSVLRGPEGTGRFDMLAGT-GRSMFDWVRAL---APRADYCVAVGSCAAFGGVPAGAPDP 133
Query: 136 -----YHYSYSVVRGC-------DRIVPVDIYVPGCPPTAEALIYGILLL 173
+S + + G +PV + + GC P ++ + L
Sbjct: 134 TDACGLQFSATEIGGALGADFRSRSGLPV-VNISGCAPHPGWIMETVAAL 182
>gi|110804986|ref|YP_688506.1| hydrogenase-1 small subunit [Shigella flexneri 5 str. 8401]
gi|110614534|gb|ABF03201.1| hydrogenase-1 small subunit [Shigella flexneri 5 str. 8401]
Length = 362
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 128 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 186
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 187 IPD-VMSAIIT 196
>gi|50403694|sp|O33405|MBHS_OLICO RecName: Full=Uptake hydrogenase small subunit; AltName:
Full=Hydrogenlyase; AltName: Full=Membrane-bound
hydrogenase small subunit; Flags: Precursor
gi|47115415|emb|CAG28468.1| hydrogenase small subunit (HoxS) [Oligotropha carboxidovorans OM5]
Length = 360
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS GSCA+ G + R +++ P+ I VPGCPP
Sbjct: 138 KPFVDQLRYAAKHAKAIISWGSCASHGCVQAARPNPTRATPVHQVITDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|317014051|gb|ADU81487.1| hydrogenase (NiFe) small subunit HydA [Helicobacter pylori
Gambia94/24]
Length = 383
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 127 GSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 183 GTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|307637320|gb|ADN79770.1| Quinone-reactive Ni/Fe-hydrogenase small chain precursor
[Helicobacter pylori 908]
gi|325995911|gb|ADZ51316.1| Quinone-reactive Ni/Fe-hydrogenase small chain precursor
[Helicobacter pylori 2018]
gi|325997505|gb|ADZ49713.1| Quinone-reactive Ni/Fe-hydrogenase small subunit precursor protein
[Helicobacter pylori 2017]
Length = 384
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 5/40 (12%)
Query: 127 GSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPT 162
G+C++ GG + + S + +I+ PV I VPGCPP+
Sbjct: 183 GTCSSFGGVQAAYPNPSNAQPLHKIIDKPV-INVPGCPPS 221
>gi|307611326|emb|CBX00987.1| hypothetical protein LPW_26891 [Legionella pneumophila 130b]
Length = 261
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 29/113 (25%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----YHYS------- 139
D+ V G++ T +R++ + +Y+I++G+CA GG + S
Sbjct: 51 VDIAFVEGSISTPDEEHRIRKIREN---SQYLITIGACATAGGIQALRNFADSREWIASV 107
Query: 140 YS---------VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK----KIRR 179
Y+ V VD + GCP + ++ I L KI+R
Sbjct: 108 YASPDYIKTLTTSTAIAHHVKVDWELWGCPVNSGQILEAIRFLLSNATPKIKR 160
>gi|288818325|ref|YP_003432673.1| Ni,Fe-hydrogenase small subunit [Hydrogenobacter thermophilus TK-6]
gi|152061255|dbj|BAF73674.1| Ni,Fe-hydrogenase small subunit [Hydrogenobacter thermophilus]
gi|288787725|dbj|BAI69472.1| Ni,Fe-hydrogenase small subunit [Hydrogenobacter thermophilus TK-6]
gi|308751922|gb|ADO45405.1| hydrogenase (NiFe) small subunit HydA [Hydrogenobacter thermophilus
TK-6]
Length = 351
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 110 LRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV---PVDIYVPGCPPTAE 164
L + + + VI+ GSCA+ G + + +++ P+ I VPGCPP AE
Sbjct: 138 LENLKESAKGAKAVIAWGSCASWGCVQAAKPNPTTAVPIHKVITDKPI-IKVPGCPPIAE 196
>gi|238921266|ref|YP_002934781.1| hydrogenase-1 small chain (HYD1) [Edwardsiella ictaluri 93-146]
gi|238870835|gb|ACR70546.1| hydrogenase-1 small chain (HYD1) [Edwardsiella ictaluri 93-146]
Length = 373
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKKAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|74311529|ref|YP_309948.1| hydrogenase-1 small subunit [Shigella sonnei Ss046]
gi|73855006|gb|AAZ87713.1| hydrogenase-1 small subunit [Shigella sonnei Ss046]
gi|323165456|gb|EFZ51243.1| uptake hydrogenase small subunit [Shigella sonnei 53G]
Length = 372
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAAWPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|291614084|ref|YP_003524241.1| hydrogenase (NiFe) small subunit HydA [Sideroxydans lithotrophicus
ES-1]
gi|291584196|gb|ADE11854.1| hydrogenase (NiFe) small subunit HydA [Sideroxydans lithotrophicus
ES-1]
Length = 371
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGG--YYHYSY 140
G P +P S +AG + M + + ++++G+CA GG +
Sbjct: 129 GSIPMGNPGYS---AIAGISNHDM------LVETAKGAAAIVAVGTCATYGGIPMADPNP 179
Query: 141 SVVRGCDRIV---PVDIYVPGCPPTA 163
+ IV P+ I VPGCPP
Sbjct: 180 TGAVPVSDIVKDKPI-INVPGCPPIP 204
>gi|229490920|ref|ZP_04384755.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Rhodococcus
erythropolis SK121]
gi|229322310|gb|EEN88096.1| NADH ubiquinone oxidoreductase, 20 kda subunit [Rhodococcus
erythropolis SK121]
Length = 371
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 13/69 (18%)
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRI----------VPVDIYVPGCPPTAEA 165
P+ V+++G+CA GG + + + G +P+ + VPGCP +
Sbjct: 152 PKATAVVAVGTCATYGGIHAMAGNPTGAMGVPDYLGWTWKSKAGIPI-VCVPGCPIQPDN 210
Query: 166 LIYGILLLQ 174
L + L
Sbjct: 211 LSETLTYLL 219
>gi|148360079|ref|YP_001251286.1| sulfhydrogenase subunit delta [Legionella pneumophila str. Corby]
gi|296108100|ref|YP_003619801.1| sulfhydrogenase delta subunit [Legionella pneumophila 2300/99
Alcoy]
gi|148281852|gb|ABQ55940.1| sulfhydrogenase delta subunit [Legionella pneumophila str. Corby]
gi|295650002|gb|ADG25849.1| sulfhydrogenase delta subunit [Legionella pneumophila 2300/99
Alcoy]
Length = 261
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 29/113 (25%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----YHYS------- 139
D+ V G++ T +R++ + +Y+I++G+CA GG + S
Sbjct: 51 VDIAFVEGSISTPDEEHRIRKIREN---SQYLITIGACATAGGIQALRNFADSREWMASV 107
Query: 140 YS---------VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK----KIRR 179
Y+ V VD + GCP + ++ I L KI+R
Sbjct: 108 YASPDYIKTLTTSTAIAHHVKVDWELWGCPVNSGQILEAIRFLLSNATPKIKR 160
>gi|126462904|ref|YP_001044018.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodobacter
sphaeroides ATCC 17029]
gi|126104568|gb|ABN77246.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodobacter
sphaeroides ATCC 17029]
Length = 330
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 24/110 (21%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS- 141
G R ++AGT M + R+ P R+V+++GSCA GG +
Sbjct: 72 GAIARGPRGTGRFQMLAGT-GRSMLETVTRL---APLARHVVAVGSCAAYGGMTSAGGNP 127
Query: 142 ----------VVRG--------CDRIVPVDIYVPGCPPTAEALIYGILLL 173
G +PV + V GCP + ++LL
Sbjct: 128 SDATGLQYEGTHEGGILPPEFRARDGLPV-VNVAGCPTHPGWVTETLMLL 176
>gi|54298469|ref|YP_124838.1| hypothetical protein lpp2533 [Legionella pneumophila str. Paris]
gi|53752254|emb|CAH13686.1| hypothetical protein lpp2533 [Legionella pneumophila str. Paris]
Length = 261
Score = 35.4 bits (80), Expect = 4.1, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 29/113 (25%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----YHYS------- 139
D+ V G++ T +R++ + +Y+I++G+CA GG + S
Sbjct: 51 VDIAFVEGSISTPDEEHRIRKIREN---SQYLITIGACATAGGIQALRNFADSREWMASV 107
Query: 140 YS---------VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK----KIRR 179
Y+ V VD + GCP + ++ I L KI+R
Sbjct: 108 YASPDYIKTLTTSTAIAHHVKVDWELWGCPVNSGQILEAIRFLLSNATPKIKR 160
>gi|304560169|gb|ADM42833.1| Uptake hydrogenase small subunit precursor [Edwardsiella tarda
FL6-60]
Length = 373
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 138 RPFIEKLKKAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 196
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 197 IPD-VMSAIIT 206
>gi|219669290|ref|YP_002459725.1| hydrogenase (NiFe) small subunit HydA [Desulfitobacterium hafniense
DCB-2]
gi|219539550|gb|ACL21289.1| hydrogenase (NiFe) small subunit HydA [Desulfitobacterium hafniense
DCB-2]
Length = 316
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI---VPVDIYVPGCPPTA 163
+ + + VI++GSCA GG ++ G + V V + +P CP
Sbjct: 140 KPFIEQFKLAAEKAEAVIAVGSCACYGGIPRAGFTGAAGAQEVLEGVKV-VNLPSCPVKP 198
Query: 164 EALIYGILL 172
+ L+ G+LL
Sbjct: 199 DRLV-GLLL 206
>gi|158314323|ref|YP_001506831.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia sp. EAN1pec]
gi|158109728|gb|ABW11925.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Frankia sp. EAN1pec]
Length = 351
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 100 GTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---- 153
+T + + + P+ +++ G+CA GG + + + G + D
Sbjct: 109 DPVTRQPVTTSTWLDRLAPKALAILAAGTCATYGGIHAMAGNPTGAMGVPDYLGWDWKSK 168
Query: 154 -----IYVPGCPPTAEALIYGILLLQ 174
+ VPGCP + L I L
Sbjct: 169 AQIPIVCVPGCPVQPDNLSETITYLL 194
>gi|332093601|gb|EGI98659.1| uptake hydrogenase small subunit [Shigella boydii 3594-74]
gi|333008956|gb|EGK28416.1| uptake hydrogenase small subunit [Shigella flexneri K-272]
gi|333020268|gb|EGK39538.1| uptake hydrogenase small subunit [Shigella flexneri K-227]
Length = 362
Score = 35.4 bits (80), Expect = 4.3, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 128 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 186
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 187 IPD-VMSAIIT 196
>gi|89894847|ref|YP_518334.1| Ni,Fe-hydrogenase small subunit [Desulfitobacterium hafniense Y51]
gi|89334295|dbj|BAE83890.1| Ni,Fe-hydrogenase small subunit [Desulfitobacterium hafniense Y51]
Length = 319
Score = 35.0 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI---VPVDIYVPGCPPTA 163
+ + + VI++GSCA GG ++ G + V V + +P CP
Sbjct: 143 KPFIEQFKLAAEKAEAVIAVGSCACYGGIPRAGFTGAAGAQEVLEGVKV-VNLPSCPVKP 201
Query: 164 EALIYGILL 172
+ L+ G+LL
Sbjct: 202 DRLV-GLLL 209
>gi|47605969|sp|P61429|PHNS2_DESVH RecName: Full=Periplasmic [NiFe] hydrogenase small subunit 2;
AltName: Full=NiFe hydrogenlyase small chain 2; Flags:
Precursor
gi|311234620|gb|ADP87474.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris RCH1]
Length = 324
Score = 35.0 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 123 VISMGSCANGGGYYHYSYSVVR--GCDRIV------PVDIYVPGCPPTAEALIYGILLLQ 174
VI+MG+CA+ GG + + G + P++ + GCPP I ++ L
Sbjct: 158 VIAMGTCASFGGIQAAAPNPSGAIGVREALAPFGIQPIN--IAGCPPNPVNYIGTVVHLL 215
Query: 175 KK 176
K
Sbjct: 216 TK 217
>gi|296171557|ref|ZP_06852821.1| uptake hydrogenase small subunit [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295894119|gb|EFG73880.1| uptake hydrogenase small subunit [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length = 351
Score = 35.0 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPPTAEAL 166
P+ ++++G+CA GG + + + G + D + VPGCP + L
Sbjct: 132 PKATAIVAVGTCATYGGIHAMAGNPTGAMGVPDYLGWDWKSKAGIPIVCVPGCPIHPDNL 191
Query: 167 IYGILLLQ 174
+ L
Sbjct: 192 SETLTYLL 199
>gi|237750634|ref|ZP_04581114.1| Ni/Fe-hydrogenase small subunit [Helicobacter bilis ATCC 43879]
gi|229373724|gb|EEO24115.1| Ni/Fe-hydrogenase small subunit [Helicobacter bilis ATCC 43879]
Length = 425
Score = 35.0 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 77 YDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYY 136
YD P+ ++ + G A R V + ++G+C++ GG
Sbjct: 180 YDGRYVMMVEGGIPKDTEYFLTIGASGRTGAEECRHV---AKHAAAIFAIGTCSSFGGVQ 236
Query: 137 HYSYSVVR--GCDRIVPVDIY-VPGCPPTAEALIYGILL 172
+ + I+ + VPGCPP + ++ ++
Sbjct: 237 AAAPNPTNAHPLSDIIDKKVINVPGCPPNEKNIVGTLMQ 275
>gi|146279406|ref|YP_001169564.1| hypothetical protein Rsph17025_3379 [Rhodobacter sphaeroides ATCC
17025]
gi|145557647|gb|ABP72259.1| hypothetical protein Rsph17025_3379 [Rhodobacter sphaeroides ATCC
17025]
Length = 332
Score = 35.0 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 29/91 (31%)
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRI--------------- 149
M A+RR+ P R+V+++G+CA GG + D +
Sbjct: 95 PMLEAVRRL---APLARHVVAVGTCAAYGGMTSAGGN---PSDAVGLQYEGAHPGGALPS 148
Query: 150 -------VPVDIYVPGCPPTAEALIYGILLL 173
+ V I V GCP +I +++L
Sbjct: 149 AFRARGGLKV-INVAGCPTHPGWVIETLMML 178
>gi|3378677|emb|CAA74584.1| uptake hydrogenase [Rhodobacter sphaeroides]
Length = 330
Score = 35.0 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 24/110 (21%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS- 141
G R ++AGT M + R+ P R+V+++GSCA GG +
Sbjct: 72 GAIARGPRGTGRFQMLAGT-GRSMLETVTRL---APLARHVVAVGSCAAYGGMTIAGGNP 127
Query: 142 ----------VVRG--------CDRIVPVDIYVPGCPPTAEALIYGILLL 173
G +PV + V GCP + ++LL
Sbjct: 128 SDATGLQYEGTHEGGILPPEFRARDGLPV-VNVAGCPTHPGWVTETLMLL 176
>gi|52842676|ref|YP_096475.1| sulfhydrogenase delta subunit [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52629787|gb|AAU28528.1| sulfhydrogenase delta subunit [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 261
Score = 35.0 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 29/113 (25%)
Query: 93 SDVMIVAGTL-TNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----YHYS------- 139
D+ V G++ T +R++ + +Y+I++G+CA GG + S
Sbjct: 51 VDIAFVEGSISTPDEEHRIRKIREN---SQYLITIGACATAGGIQALRNFADSREWMASV 107
Query: 140 YS---------VVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQK----KIRR 179
Y+ V VD + GCP + ++ I L KI+R
Sbjct: 108 YASPDYIKTLTTSTAIAHHVKVDWELWGCPVNSGQILEAIRFLLSNATPKIKR 160
>gi|120601769|ref|YP_966169.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris DP4]
gi|120561998|gb|ABM27742.1| hydrogenase (NiFe) small subunit HydA [Desulfovibrio vulgaris DP4]
Length = 324
Score = 35.0 bits (79), Expect = 4.5, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 123 VISMGSCANGGGYYHYSYSVVR--GCDRIV------PVDIYVPGCPPTAEALIYGILLLQ 174
VI+MG+CA+ GG + + G + P++ + GCPP I ++ L
Sbjct: 158 VIAMGTCASFGGIQAAAPNPSGAIGVREALAPFGIQPIN--IAGCPPNPVNYIGTVVHLL 215
Query: 175 KK 176
K
Sbjct: 216 TK 217
>gi|118592987|ref|ZP_01550374.1| uptake hydrogenase accessory protein hupU [Stappia aggregata IAM
12614]
gi|118434294|gb|EAV40948.1| uptake hydrogenase accessory protein hupU [Stappia aggregata IAM
12614]
Length = 341
Score = 35.0 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 26/89 (29%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--------- 144
+M G + AL + RYVI++GSCA GG + V
Sbjct: 96 HIMAGTGKPVMEWVEAL------AKKARYVIAVGSCAAYGGITAAGSNEVEACGLAYDGR 149
Query: 145 ------GCD----RIVPVDIYVPGCPPTA 163
G D +PV I V GCP
Sbjct: 150 KPGGLLGADFRSGAGLPV-INVAGCPIHP 177
>gi|49234755|ref|YP_015635.2| hydrogenase small subunit [Oligotropha carboxidovorans OM5]
Length = 370
Score = 35.0 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ + +IS GSCA+ G + R +++ P+ I VPGCPP
Sbjct: 138 KPFVDQLRYAAKHAKAIISWGSCASHGCVQAARPNPTRATPVHQVITDKPI-IKVPGCPP 196
Query: 162 TAE 164
AE
Sbjct: 197 IAE 199
>gi|330964959|gb|EGH65219.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 247
Score = 35.0 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMP---RYDLERF 82
+ E G+++ +D + R L + ++ E+ + P R
Sbjct: 67 EELGGEFITDGWVIDPIDGTGNYLRGTPLWGIAVAYMSAGVPEIGVVAYPALGYTLAART 126
Query: 83 G------FAPRASPRQSDVMIVAGTL--TNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
G P P+ + + +AG T A L R+ + + + ++ CA G
Sbjct: 127 GDGLLRNGIPFVRPQPPEHLRIAGIGENTRWDAEELGRLQLTLRQQGWGLAGYRCATIGL 186
Query: 135 YY 136
+
Sbjct: 187 AF 188
>gi|330877619|gb|EGH11768.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 247
Score = 35.0 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMP---RYDLERF 82
+ E G+++ +D + R L + ++ E+ + P R
Sbjct: 67 EELGGEFITDGWVIDPIDGTGNYLRGTPLWGIAVAYMSAGVPEIGVVAYPALGYTLAART 126
Query: 83 G------FAPRASPRQSDVMIVAGTL--TNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
G P P+ + + +AG T A L R+ + + + ++ CA G
Sbjct: 127 GDGLLRNGIPFVRPQPPEHLRIAGIGENTRWDAEELGRLQLTLRQQGWGLAGYRCATIGL 186
Query: 135 YY 136
+
Sbjct: 187 AF 188
>gi|193212947|ref|YP_001998900.1| hydrogenase (NiFe) small subunit HydA [Chlorobaculum parvum NCIB
8327]
gi|193086424|gb|ACF11700.1| hydrogenase (NiFe) small subunit HydA [Chlorobaculum parvum NCIB
8327]
Length = 360
Score = 35.0 bits (79), Expect = 4.8, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 127 GSCANGGGYYH--YSYSVVRGCDRIV---PVDIYVPGCPPTAE 164
G+CA+ G + + + + D+I+ P+ + VPGCPP AE
Sbjct: 158 GACASFGCVQNAKPNPTGAQPIDKIIKDKPI-VKVPGCPPIAE 199
>gi|20378770|gb|AAM20979.1| hydrogenase small subunit [Bradyrhizobium sp. UPM1166]
Length = 158
Score = 35.0 bits (79), Expect = 4.9, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ E +I+ G+CA+ G + D+++ P+ I VPGCPP
Sbjct: 46 KPFVEKLRWMAEEAMAIIAWGTCASWGCVQAAKPNPTGAAPIDKVITNKPI-IKVPGCPP 104
Query: 162 TAEALIYGILL 172
AE ++ G++
Sbjct: 105 IAE-VMSGLVT 114
>gi|46580929|ref|YP_011737.1| periplasmic [NiFe] hydrogenase small subunit, isozyme 2
[Desulfovibrio vulgaris str. Hildenborough]
gi|46450349|gb|AAS96997.1| periplasmic [NiFe] hydrogenase, small subunit, isozyme 2
[Desulfovibrio vulgaris str. Hildenborough]
Length = 304
Score = 35.0 bits (79), Expect = 4.9, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
Query: 123 VISMGSCANGGGYYHYSYSVVR--GCDRIV------PVDIYVPGCPPTAEALIYGILLLQ 174
VI+MG+CA+ GG + + G + P++ + GCPP I ++ L
Sbjct: 138 VIAMGTCASFGGIQAAAPNPSGAIGVREALAPFGIQPIN--IAGCPPNPVNYIGTVVHLL 195
Query: 175 KK 176
K
Sbjct: 196 TK 197
>gi|218247973|ref|YP_002373344.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
8801]
gi|257060703|ref|YP_003138591.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
8802]
gi|218168451|gb|ACK67188.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
8801]
gi|256590869|gb|ACV01756.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
8802]
Length = 320
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 23/82 (28%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY--YHYSYSVVRGCDRI------------ 149
M L + +V+++G CA GG + S G +
Sbjct: 91 RPMKDWLADLSKIA---GFVVAVGDCATYGGIPAMEPNPSESIGVQFLKRKEGGFLGADY 147
Query: 150 -----VPVDIYVPGCPPTAEAL 166
+PV I +PGCP + +
Sbjct: 148 RSQAGLPV-INIPGCPAHPDWI 168
>gi|121533367|ref|ZP_01665195.1| hydrogenase (NiFe) small subunit HydA [Thermosinus carboxydivorans
Nor1]
gi|121307926|gb|EAX48840.1| hydrogenase (NiFe) small subunit HydA [Thermosinus carboxydivorans
Nor1]
Length = 325
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 9/113 (7%)
Query: 68 EMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMG 127
E+ +Y L G P A+ R + + G + RV + + V+++G
Sbjct: 97 EVRARYAGQYYLVVEGAVPVAAGRHTATL---GEHNGQPVPFADRVRQMAAKAKAVMAVG 153
Query: 128 SCANGGGY--YHYSYSVVRGCDRIV---PVDIYVPGCPPTAEALIYGILLLQK 175
+CA GG + + + +V P+ + VPGCP + ++ +L L +
Sbjct: 154 TCAAYGGIPAAGVNPTASKAVSAVVRGTPL-VNVPGCPIHPDWVLGTLLHLIR 205
>gi|289675528|ref|ZP_06496418.1| inositol monophosphatase [Pseudomonas syringae pv. syringae FF5]
gi|302189310|ref|ZP_07265983.1| inositol monophosphatase [Pseudomonas syringae pv. syringae 642]
gi|330899705|gb|EGH31124.1| inositol monophosphatase [Pseudomonas syringae pv. japonica str.
M301072PT]
gi|330940932|gb|EGH43875.1| inositol monophosphatase [Pseudomonas syringae pv. pisi str. 1704B]
gi|330953162|gb|EGH53422.1| inositol monophosphatase [Pseudomonas syringae Cit 7]
Length = 247
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMP---RYDLERF 82
+ E G+++ +D + R L + ++ E+ + P R
Sbjct: 67 EEMGGEFITDGWVIDPIDGTGNYLRGTPLWGIAVAYMSAGEPEIGVVAYPALGYTLAART 126
Query: 83 G------FAPRASPRQSDVMIVAGTL--TNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
G P P+ + + +AG T A + +++ + + ++ CA G
Sbjct: 127 GDGLLRNGVPFVRPQPPEHLRIAGVGENTRWDAEEMGKLHLSLRRQGWGLAGYRCATIGL 186
Query: 135 YY 136
+
Sbjct: 187 AF 188
>gi|289623598|ref|ZP_06456552.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646822|ref|ZP_06478165.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330870409|gb|EGH05118.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 247
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMP---RYDLERF 82
+ E G+++ +D + R L + ++ E+ + P R
Sbjct: 67 EEMGGEFITDGWVIDPIDGTGNYLRGTPLWGIAVAYMSAGEPEIGVVAYPALGYTLAART 126
Query: 83 G------FAPRASPRQSDVMIVAGTL--TNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
G P P+ + + +AG T A + +++ + + ++ CA G
Sbjct: 127 GDGLLRNGVPFVRPQPPEHLRIAGVGENTRWDAEEMGKLHLSLRRQGWGLAGYRCATIGL 186
Query: 135 YY 136
+
Sbjct: 187 AF 188
>gi|257483235|ref|ZP_05637276.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|330988248|gb|EGH86351.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012461|gb|EGH92517.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 247
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMP---RYDLERF 82
+ E G+++ +D + R L + ++ E+ + P R
Sbjct: 67 EEMGGEFITDGWVIDPIDGTGNYLRGTPLWGIAVAYMSAGEPEIGVVAYPALGYTLAART 126
Query: 83 G------FAPRASPRQSDVMIVAGTL--TNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
G P P+ + + +AG T A + +++ + + ++ CA G
Sbjct: 127 GDGLLRNGVPFVRPQPPEHLRIAGVGENTRWDAEEMGKLHLSLRRQGWGLAGYRCATIGL 186
Query: 135 YY 136
+
Sbjct: 187 AF 188
>gi|257093873|ref|YP_003167514.1| hydrogenase (NiFe) small subunit HydA [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257046397|gb|ACV35585.1| hydrogenase (NiFe) small subunit HydA [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 395
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSV-------VRGCDRIV--PVDIYVPGC 159
A+ + + VI++GSCA+ GG S G ++ PV + +PGC
Sbjct: 148 AIDLTKECAADAAAVIAIGSCASWGGMPSIMPSNGDPNPTGASGVAAVLGKPV-VTIPGC 206
Query: 160 PPTAEALIYGIL 171
PP + ++
Sbjct: 207 PPNPYNFLSTVV 218
>gi|71733740|ref|YP_276651.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71554293|gb|AAZ33504.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320322828|gb|EFW78921.1| inositol monophosphatase family protein [Pseudomonas syringae pv.
glycinea str. B076]
Length = 247
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMP---RYDLERF 82
+ E G+++ +D + R L + ++ E+ + P R
Sbjct: 67 EEMGGEFITDGWVIDPIDGTGNYLRGTPLWGIAVAYMSAGEPEIGVVAYPALGYTLAART 126
Query: 83 G------FAPRASPRQSDVMIVAGTL--TNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
G P P+ + + +AG T A + +++ + + ++ CA G
Sbjct: 127 GDGLLRNGVPFVRPQPPEHLRIAGVGENTRWDAEEMGKLHLSLRRQGWGLAGYRCATIGL 186
Query: 135 YY 136
+
Sbjct: 187 AF 188
>gi|66047734|ref|YP_237575.1| inositol monophosphatase [Pseudomonas syringae pv. syringae B728a]
gi|63258441|gb|AAY39537.1| Inositol monophosphatase [Pseudomonas syringae pv. syringae B728a]
gi|330969787|gb|EGH69853.1| inositol monophosphatase [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 247
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMP---RYDLERF 82
+ E G+++ +D + R L + ++ E+ + P R
Sbjct: 67 EEMGGEFITDGWVIDPIDGTGNYLRGTPLWGIAVAYMSAGEPEIGVVAYPALGYTLAART 126
Query: 83 G------FAPRASPRQSDVMIVAGTL--TNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
G P P+ + + +AG T A + +++ + + ++ CA G
Sbjct: 127 GDGLLRNGVPFVRPQPPEHLRIAGVGENTRWDAEEMGKLHLSLRRQGWGLAGYRCATIGL 186
Query: 135 YY 136
+
Sbjct: 187 AF 188
>gi|163783182|ref|ZP_02178176.1| hydrogenase small subunit [Hydrogenivirga sp. 128-5-R1-1]
gi|159881516|gb|EDP75026.1| hydrogenase small subunit [Hydrogenivirga sp. 128-5-R1-1]
Length = 344
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 33/136 (24%)
Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQS-------DVMIVAGT 101
+ R+ ++M L ++E + M G S R++ +++V G+
Sbjct: 66 FIRSTTIMPTEVLLDFISLEYHETLMAPA-----GEYAEESKREAMERYKGKYILVVEGS 120
Query: 102 LTN---KMASALRRVYDQMPEPR----YVISMGSCANGGGY---------YHYSYSVVRG 145
+T R Y+ + E V+++GSCA GG Y +RG
Sbjct: 121 VTPNGVYCTVGGRSSYELLKESAENAAAVMAVGSCACWGGVPKAEPNPTGAVPLYEALRG 180
Query: 146 CDRIVPVDIYVPGCPP 161
+ +PGCPP
Sbjct: 181 -----KTVVNIPGCPP 191
>gi|332558935|ref|ZP_08413257.1| Uptake hydrogenase [Rhodobacter sphaeroides WS8N]
gi|332276647|gb|EGJ21962.1| Uptake hydrogenase [Rhodobacter sphaeroides WS8N]
Length = 330
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 24/110 (21%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS- 141
G R ++AGT M + R+ P R+V+++GSCA GG +
Sbjct: 72 GAIARGPRGTGRFQMLAGT-GRSMLETVTRL---APLARHVVAVGSCAAFGGMTSAGGNP 127
Query: 142 ----------VVRG--------CDRIVPVDIYVPGCPPTAEALIYGILLL 173
G +PV + V GCP + ++LL
Sbjct: 128 SDATGLQYEGTHEGGILPSEFRARDGLPV-VNVAGCPTHPGWVTETLMLL 176
>gi|322419767|ref|YP_004198990.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
gi|320126154|gb|ADW13714.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
Length = 252
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 31/126 (24%)
Query: 79 LERFGFAPRASPRQSDVM-------IVAGTLTNKMASALRRVYDQMPEPRYVISMGSCAN 131
L RF V IV G ++ L ++ R +++ G+CA
Sbjct: 32 LSRFELIYFPMGESGSVTDARFDAAIVEGAVSTP--GDLATLFRLRNTSRLLVAYGTCAL 89
Query: 132 GGGYYHYS----------YSVVRG------------CDRIVPVDIYVPGCPPTAEALIYG 169
GG +V V VD + GCPP +I
Sbjct: 90 HGGVAAMCNKECAREELLLAVYGPGEKELETFPPVPLGNFVSVDWTITGCPPEKPDIIEL 149
Query: 170 ILLLQK 175
+ L++
Sbjct: 150 LAALKR 155
>gi|296270588|ref|YP_003653220.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermobispora
bispora DSM 43833]
gi|296093375|gb|ADG89327.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Thermobispora
bispora DSM 43833]
Length = 351
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 118 PEPRYVISMGSCANGGGYYHY--SYSVVRGCDRIVPVD---------IYVPGCPPTAEAL 166
P+ V+++G+CA GG + + + G + D + VPGCP +
Sbjct: 126 PKAWAVVAVGTCATYGGIHAMAGNPTGCMGLVDYLGRDFRSKGGLPIVNVPGCPVQPDNF 185
Query: 167 IYGILLLQ 174
+ + L
Sbjct: 186 METLTWLL 193
>gi|2495222|sp|Q46045|MBHS_CITFR RecName: Full=Hydrogenase-1 small chain; Short=HYD1; AltName:
Full=Membrane-bound hydrogenase 1 small subunit;
AltName: Full=NiFe hydrogenase; Flags: Precursor
gi|466528|dbj|BAA05929.1| hydrogenase small subunit [Citrobacter freundii]
Length = 375
Score = 35.0 bits (79), Expect = 5.2, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 127 GSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTAEALIYGILL 172
G+CA+ G + + D+++ P+ + VPGCPP + ++ I+
Sbjct: 160 GTCASWGCVQAARPNPTQATPIDKVITDKPI-VKVPGCPPIPD-VMSAIIT 208
>gi|220928500|ref|YP_002505409.1| hydrogenase (NiFe) small subunit HydA [Clostridium cellulolyticum
H10]
gi|219998828|gb|ACL75429.1| hydrogenase (NiFe) small subunit HydA [Clostridium cellulolyticum
H10]
Length = 299
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 119 EPRYVISMGSCANGGGYY--HYSYSVVRGCDRIV--PVDIYVPGCPPTAEALI 167
+ YVI++G+CA+ GG + S I+ V I +PGCP + +
Sbjct: 136 KASYVIALGACASHGGVSAAKPNPSDCVSVQSILNRKV-IKLPGCPCHPDWFM 187
>gi|94734325|emb|CAK04535.1| novel protein similar to C1q and tumor necrosis factor related
protein 4 (C1QTNF4) [Danio rerio]
Length = 362
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 135 YYHYSYSVVRGCDRIV-PVDIYVPGCPP 161
Y S S V + + P D+++PGCPP
Sbjct: 167 VYPDSTSSVGYLNNHLSPPDLHLPGCPP 194
>gi|113681971|ref|NP_001038472.1| hypothetical protein LOC563077 [Danio rerio]
gi|94733252|emb|CAK04886.1| novel protein similar to vertebrate C1q and tumor necrosis factor
related protein (C1QTNF4) [Danio rerio]
Length = 330
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 135 YYHYSYSVVRGCDRIV-PVDIYVPGCPP 161
Y S S V + + P D+++PGCPP
Sbjct: 135 VYPDSTSSVGYLNNHLSPPDLHLPGCPP 162
>gi|296131798|ref|YP_003639045.1| hydrogenase (NiFe) small subunit HydA [Thermincola sp. JR]
gi|296030376|gb|ADG81144.1| hydrogenase (NiFe) small subunit HydA [Thermincola potens JR]
Length = 390
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIV---PVDIYVPGCPPTA 163
+ + +I+ G+C+ GG + + G IV PV I +PGCP
Sbjct: 131 KPFRETLLKTAEKAAAIIAFGTCSAYGGINAAAPTKSVGVQSIVKDKPV-INLPGCPGKP 189
Query: 164 EALIYGIL 171
L+ +L
Sbjct: 190 SRLVATLL 197
>gi|293433268|ref|ZP_06661696.1| hydrogenase small subunit [Escherichia coli B088]
gi|291324087|gb|EFE63509.1| hydrogenase small subunit [Escherichia coli B088]
Length = 399
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 165 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 223
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 224 IPD-VMSAIIT 233
>gi|221639923|ref|YP_002526185.1| Uptake hydrogenase [Rhodobacter sphaeroides KD131]
gi|221160704|gb|ACM01684.1| Uptake hydrogenase [Rhodobacter sphaeroides KD131]
Length = 330
Score = 34.6 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 24/110 (21%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS- 141
G R ++AGT M + R+ P R+V+++GSCA GG +
Sbjct: 72 GAIARGPRGTGRFQMLAGT-GRSMLETVTRL---APLARHVVAVGSCAAFGGMTSAGGNP 127
Query: 142 ----------VVRG--------CDRIVPVDIYVPGCPPTAEALIYGILLL 173
G +PV + V GCP + ++LL
Sbjct: 128 SDATGLQYEGTHEGGILPPEFRARDGLPV-VNVAGCPTHPGWVTETLMLL 176
>gi|86156909|ref|YP_463694.1| hydrogenase (NiFe) small subunit (hydA) [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85773420|gb|ABC80257.1| hydrogenase (NiFe) small subunit (hydA) [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 374
Score = 34.6 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV-------PVDIYVPGC 159
A+ + + + VI +GSC++ GG + + + G I+ PV + +PGC
Sbjct: 138 AVDSLVECAEKAAAVICIGSCSSWGGVPSAAPNPTQAVGAPEILREKGIKKPV-VTLPGC 196
Query: 160 PPTAEALIYGILL 172
P L+ +L
Sbjct: 197 PANPYNLLGTVLQ 209
>gi|332836093|ref|XP_521850.3| PREDICTED: otogelin [Pan troglodytes]
Length = 2909
Score = 34.6 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 16/69 (23%)
Query: 113 VYDQMPEPRYVISMGSCANGGGY-------YHYSYS-----VVRGCDRIVPVDIYVPGCP 160
++ + + +C + G ++ S S + D IVPVD+ GCP
Sbjct: 2404 LHRRHSALCIPEAKCACTDSMGVPRALGETWNSSLSGCCQHQCQASDTIVPVDL---GCP 2460
Query: 161 -PTAEALIY 168
P E+ +
Sbjct: 2461 SPRPESCLR 2469
>gi|325673779|ref|ZP_08153470.1| hydrogenase/sulfur reductase [Rhodococcus equi ATCC 33707]
gi|325555800|gb|EGD25471.1| hydrogenase/sulfur reductase [Rhodococcus equi ATCC 33707]
Length = 263
Score = 34.6 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 31/134 (23%)
Query: 55 LMWMTFGLAC------CAVEMMQASMPRYDLERFGFAPRASPRQS-DVMIVAGTLTNKMA 107
+ C C E++ D+ F A+ D+ +V G++T
Sbjct: 16 VWKFASCDGCQLSLLDCEDELLTV-AEELDIAHFLELSSATVEGPYDLSLVEGSVT--TE 72
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGY---------------------YHYSYSVVRGC 146
+ R++ +++++G+CA GG Y + +
Sbjct: 73 EDVERIHRIRDASEHLVTIGACATAGGVQALRNFGNVAEFAAAVYASPEYIDTLATSTPI 132
Query: 147 DRIVPVDIYVPGCP 160
V VD + GCP
Sbjct: 133 SAHVRVDFELHGCP 146
>gi|197120931|ref|YP_002132882.1| hydrogenase (NiFe) small subunit HydA [Anaeromyxobacter sp. K]
gi|220915628|ref|YP_002490932.1| hydrogenase (NiFe) small subunit HydA [Anaeromyxobacter
dehalogenans 2CP-1]
gi|196170780|gb|ACG71753.1| hydrogenase (NiFe) small subunit HydA [Anaeromyxobacter sp. K]
gi|219953482|gb|ACL63866.1| hydrogenase (NiFe) small subunit HydA [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 374
Score = 34.6 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV-------PVDIYVPGC 159
A+ + + + VI +GSC++ GG + + + G I+ PV + +PGC
Sbjct: 138 AVDSLVECAEKAAAVICIGSCSSWGGVPSAAPNPTQAVGAPEILKEKGIKKPV-VTLPGC 196
Query: 160 PPTAEALIYGILL 172
P L+ +L
Sbjct: 197 PANPYNLLGTVLQ 209
>gi|332885033|gb|EGK05286.1| hypothetical protein HMPREF9456_02956 [Dysgonomonas mossii DSM
22836]
Length = 330
Score = 34.6 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 11/69 (15%)
Query: 103 TNKMASALRRVYDQMPEPR---YVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
++ LR +YDQM I+ G A G ++ +Y V + R P+D+Y
Sbjct: 3 FDQFHQTLRTLYDQMMPLCGNMIGIAKGI-AGLGALFYVAYRVWQSLSRAEPIDVY---- 57
Query: 160 PP--TAEAL 166
P A+
Sbjct: 58 -PLLRPFAI 65
>gi|312138945|ref|YP_004006281.1| NADH ubiquinone oxidoreductase [Rhodococcus equi 103S]
gi|311888284|emb|CBH47596.1| NADH ubiquinone oxidoreductase [Rhodococcus equi 103S]
Length = 263
Score = 34.6 bits (78), Expect = 6.1, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 23/88 (26%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135
D+ +V G++T + R++ +++++G+CA GG
Sbjct: 61 DLSLVEGSVT--TEEDVERIHRIRDASEHLVTIGACATAGGVQALRNFGNVAEFAAAVYA 118
Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCP 160
Y + + V VD + GCP
Sbjct: 119 SPEYIDTLATSTPISAHVRVDFELHGCP 146
>gi|302562806|ref|ZP_07315148.1| hydrogenase/sulfur reductase, delta subunit [Streptomyces
griseoflavus Tu4000]
gi|302480424|gb|EFL43517.1| hydrogenase/sulfur reductase, delta subunit [Streptomyces
griseoflavus Tu4000]
Length = 264
Score = 34.6 bits (78), Expect = 6.3, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 23/88 (26%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135
D+ +V G+++ L+RV RY++++G+CA GG
Sbjct: 63 DLSLVEGSVSTP--EHLQRVRRVRAASRYLVTIGACATAGGVQALRNYAGIEEYLATVYA 120
Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCP 160
Y S + VPVD + GCP
Sbjct: 121 RPDYIQSLAASTPIAAHVPVDFELRGCP 148
>gi|330976677|gb|EGH76720.1| inositol monophosphatase [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 247
Score = 34.6 bits (78), Expect = 6.5, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 42/122 (34%), Gaps = 12/122 (9%)
Query: 27 SRISSEITHKGFLVTSVDQLVTWARTGSLMWMTFG-LACCAVEMMQASMPRYDLE----- 80
+ E G+++ +D + R L + ++ E+ + P
Sbjct: 67 EEMGGEFITDGWVIDPIDGTGNYLRGTPLWGIAVAYMSAGEPEIGVVAYPALGYTLAART 126
Query: 81 RFGF----APRASPRQSDVMIVAGTL--TNKMASALRRVYDQMPEPRYVISMGSCANGGG 134
R G P P+ + + +AG T A + +++ + + ++ CA G
Sbjct: 127 RDGLLRNGVPFVRPQPPEHLRIAGVGENTRWDAEEMGKLHLSLRRQGWGLAGYRCATIGL 186
Query: 135 YY 136
+
Sbjct: 187 AF 188
>gi|302556813|ref|ZP_07309155.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
gi|302474431|gb|EFL37524.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
Length = 316
Score = 34.6 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPPTAEAL 166
P+ V+++G+CA GG + + + G + D + VPGCP +
Sbjct: 97 PKALAVVAIGTCATYGGIHAMAGNPTGAMGVPDYLGWDWKSAAGIPIVCVPGCPIQPDNF 156
Query: 167 IYGILLLQ 174
+ L
Sbjct: 157 AETLTYLL 164
>gi|77464060|ref|YP_353564.1| hydrogenase small subunit [Rhodobacter sphaeroides 2.4.1]
gi|561865|gb|AAA99490.1| homologous to HupS proteins; homologous to N-terminus of the HupU
protein from Rhodobacter capsulatus [Rhodobacter
sphaeroides]
gi|77388478|gb|ABA79663.1| hydrogenase small subunit [Rhodobacter sphaeroides 2.4.1]
Length = 330
Score = 34.6 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 24/110 (21%)
Query: 83 GFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYS- 141
G R ++AGT M + R+ P R+V+++GSCA GG +
Sbjct: 72 GAIARGPRGTGRFQMLAGT-GRSMLETVTRL---APLARHVVAVGSCAAFGGMTSAGGNP 127
Query: 142 ----------VVRG--------CDRIVPVDIYVPGCPPTAEALIYGILLL 173
G +PV + V GCP + ++LL
Sbjct: 128 SDATGLQYEGTHEGGILPPEFRARDGLPV-VNVAGCPTHPGWVTETLMLL 176
>gi|320175166|gb|EFW50276.1| Uptake hydrogenase small subunit precursor [Shigella dysenteriae
CDC 74-1112]
Length = 242
Score = 34.6 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPP 161
+ ++ +I+ G+CA+ G + + D+++ P+ I VPGCPP
Sbjct: 8 RPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPI-IKVPGCPP 66
Query: 162 TAEALIYGILL 172
+ ++ I+
Sbjct: 67 IPD-VMSAIIT 76
>gi|94310466|ref|YP_583676.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Cupriavidus
metallidurans CH34]
gi|93354318|gb|ABF08407.1| NAD-reducing hydrogenase hoxS delta subunit [Cupriavidus
metallidurans CH34]
Length = 209
Score = 34.6 bits (78), Expect = 6.7, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 36/88 (40%)
Query: 122 YVISMGSCANGGGY----------------YHYSYSVVRGCDRIVP-------------- 151
+IS+G+CA GG Y S + V G ++P
Sbjct: 106 ILISVGACAVWGGVPAMRNVVELKDCLAEAYVNSATAVAGAKAVIPFHPDIPRITTKVYP 165
Query: 152 ------VDIYVPGCPPTAEALIYGILLL 173
+D ++PGCPP +A+ + L
Sbjct: 166 CHEVVKMDYFIPGCPPDGDAIFKVLDDL 193
>gi|220908064|ref|YP_002483375.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
7425]
gi|219864675|gb|ACL45014.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Cyanothece sp. PCC
7425]
Length = 260
Score = 34.6 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 23/106 (21%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135
D+ +V G++T + ++ ++ + +I++G+CA GG
Sbjct: 57 DLSLVEGSITTPQDAERIQLVRRLSKS--LITIGACATAGGIQALRNFQDVREFTSIVYA 114
Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIR 178
Y + S VPVD + GCP E L+ I K +
Sbjct: 115 QPQYIATLSQSTAIADHVPVDFELRGCPINKEQLLEVISAFLHKRK 160
>gi|108802983|ref|YP_642920.1| Ni Fe-hydrogenase III large subunit-like protein [Rubrobacter
xylanophilus DSM 9941]
gi|108764226|gb|ABG03108.1| Ni Fe-hydrogenase III large subunit-like protein [Rubrobacter
xylanophilus DSM 9941]
Length = 540
Score = 34.6 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 78 DLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGS 128
D+E G PR + V++V G L + A VY QM PR V++ G+
Sbjct: 42 DVEAAGLGMTGVPRHASVLLVVGELPAALRRAAAVVYAQMMRPRAVLAAGA 92
>gi|261344834|ref|ZP_05972478.1| hydrogenase-2 small chain [Providencia rustigianii DSM 4541]
gi|282567282|gb|EFB72817.1| hydrogenase-2 small chain [Providencia rustigianii DSM 4541]
Length = 372
Score = 34.6 bits (78), Expect = 7.1, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 127 GSCANGGGYYHYSYSVVR--GCDRIVPVD---IYVPGCPPTA 163
GSCA+ GG + G ++ D I +PGCPP
Sbjct: 155 GSCASWGGVAAAGSNPTGAVGLSEVIK-DKTIINIPGCPPNP 195
>gi|86740645|ref|YP_481045.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Frankia sp. CcI3]
gi|86567507|gb|ABD11316.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Frankia sp. CcI3]
Length = 354
Score = 34.2 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPPTAEAL 166
P V+++G+CA GG + + + G + D + VPGCP +
Sbjct: 133 PRAWAVVAIGTCAAYGGIHAMAGNPTGSMGLADYLGHDFTSAGNLPIVNVPGCPVQPDDF 192
Query: 167 IYGI 170
+ +
Sbjct: 193 METL 196
>gi|317492598|ref|ZP_07951025.1| hydrogenase small subunit protein [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919348|gb|EFV40680.1| hydrogenase small subunit protein [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 384
Score = 34.2 bits (77), Expect = 7.5, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 127 GSCANGGGYYHYSYSVVRGC--DRIV--PVDIYVPGCPPTA 163
GSCA GG + + + PV I +PGCPP
Sbjct: 154 GSCAAWGGVPATGGNPTGAVSLEEAIGKPV-INIPGCPPNP 193
>gi|149174241|ref|ZP_01852868.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Planctomyces maris
DSM 8797]
gi|148846786|gb|EDL61122.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Planctomyces maris
DSM 8797]
Length = 262
Score = 34.2 bits (77), Expect = 7.5, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 23/102 (22%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY-----------YHYS-YS 141
D+ ++ G++T R+ + +++++G+CA GG + S Y+
Sbjct: 53 DIALIEGSVTTPHD--ATRIQQIRRDSHFLMTIGACATSGGIQALRNGADSAEFMRSVYA 110
Query: 142 VVR---------GCDRIVPVDIYVPGCPPTAEALIYGILLLQ 174
V VD + GCP LI I L
Sbjct: 111 SPGYIEVLEQSTPIADHVKVDFELRGCPINQYQLIEVIQSLL 152
>gi|302387530|ref|YP_003823352.1| FAD linked oxidase domain protein [Clostridium saccharolyticum WM1]
gi|302198158|gb|ADL05729.1| FAD linked oxidase domain protein [Clostridium saccharolyticum WM1]
Length = 463
Score = 34.2 bits (77), Expect = 7.6, Method: Composition-based stats.
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 10/97 (10%)
Query: 49 WARTGSLMWMTFGLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMAS 108
WAR + + E D++ + ++ V G +TN
Sbjct: 54 WARKYHI-CLRIRNGGHNYEGYSTGNDVLDIDLSEMNQITIDEDAHLLHVQGGVTN---- 108
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRG 145
+++Y+ + Y G+C + G Y++ G
Sbjct: 109 --KQLYEFVSSKGYPFPGGTCPSVG---VSGYALGGG 140
>gi|89902846|ref|YP_525317.1| hydrogenase (NiFe) small subunit HydA [Rhodoferax ferrireducens
T118]
gi|89347583|gb|ABD71786.1| hydrogenase (NiFe) small subunit (hydA) [Rhodoferax ferrireducens
T118]
Length = 393
Score = 34.2 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 109 ALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPV----DIYVPGCPPTAE 164
A+ V + + VI++GSCA+ GG + G + V + +PGCPP
Sbjct: 148 AIDLVKECAADAAAVIAIGSCASWGGMPSTGPNPT-GASSVAEVLGKSVVTIPGCPPNPY 206
Query: 165 ALIYGIL 171
+ ++
Sbjct: 207 NFLATVV 213
>gi|212546665|ref|XP_002153486.1| 60S ribosomal protein Nsa2, putative [Penicillium marneffei ATCC
18224]
gi|210065006|gb|EEA19101.1| 60S ribosomal protein Nsa2, putative [Penicillium marneffei ATCC
18224]
Length = 617
Score = 34.2 bits (77), Expect = 8.0, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 9/64 (14%)
Query: 79 LERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGYYHY 138
+R G S +M+VAG + + + Y Q + V + G+ G +
Sbjct: 226 PDRTGIMIIRSGEHGSMMLVAGGVPHWIPP-----YYQASSLKVVDATGA----GNAFLG 276
Query: 139 SYSV 142
+Y+V
Sbjct: 277 AYAV 280
>gi|255021688|ref|ZP_05293728.1| Uptake hydrogenase small subunit precursor [Acidithiobacillus
caldus ATCC 51756]
gi|254968828|gb|EET26350.1| Uptake hydrogenase small subunit precursor [Acidithiobacillus
caldus ATCC 51756]
Length = 320
Score = 34.2 bits (77), Expect = 8.3, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 31/84 (36%)
Query: 104 NKMASALRRVYDQMPEPRYVISMGSCANGGGY-----------------------YHYSY 140
M ++ + +YV+++G CA GG +Y
Sbjct: 91 RPMKEWVKELAGAA---QYVVALGDCATWGGIPATAPNPSDSQGLQFLKKAHGGFLGANY 147
Query: 141 SVVRGCDRIVPVDIYVPGCPPTAE 164
G +PV I +PGCP +
Sbjct: 148 RSKAG----LPV-INIPGCPAHPD 166
>gi|162452850|ref|YP_001615217.1| putative hydrogenase [Sorangium cellulosum 'So ce 56']
gi|161163432|emb|CAN94737.1| putative hydrogenase [Sorangium cellulosum 'So ce 56']
Length = 258
Score = 34.2 bits (77), Expect = 8.3, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 23/88 (26%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135
D+ +V G++T R+ + + ++++G+CA GG
Sbjct: 56 DLSLVEGSITTPAD--AERIREVRRRSKALVTIGACATAGGIQALRNFANVREFLSVVYA 113
Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCP 160
Y + + VPVD + GCP
Sbjct: 114 SPAYIETLATSTAIADHVPVDFELRGCP 141
>gi|194333686|ref|YP_002015546.1| hydrogenase (NiFe) small subunit hydA [Prosthecochloris aestuarii
DSM 271]
gi|194311504|gb|ACF45899.1| hydrogenase (NiFe) small subunit HydA [Prosthecochloris aestuarii
DSM 271]
Length = 364
Score = 34.2 bits (77), Expect = 8.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 115 DQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIV---PVDIYVPGCPPTAE 164
+ + VI+ G+CA G + + IV P+ + VPGCPP AE
Sbjct: 146 ETAKDAAAVIAWGACATFGCVQNADPNPTGAVPISEIVTDKPL-VNVPGCPPIAE 199
>gi|295701164|ref|YP_003610165.1| hydrogenase (NiFe) small subunit HydA [Burkholderia sp. CCGE1002]
gi|295441487|gb|ADG20654.1| hydrogenase (NiFe) small subunit HydA [Burkholderia sp. CCGE1002]
Length = 394
Score = 34.2 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 107 ASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVDIYV--PGCPPT 162
+ ++ + + VIS GSCA+ G + + + +++ + PGCPP
Sbjct: 136 KPFVDQLRRVSKDAKAVISWGSCASWGCVQTATPNPTQAVPIHKVITDKAIIKGPGCPPI 195
Query: 163 AE 164
AE
Sbjct: 196 AE 197
>gi|182678131|ref|YP_001832277.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182634014|gb|ACB94788.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 333
Score = 34.2 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 20/85 (23%)
Query: 108 SALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCD-------------------R 148
A+ R+V+++G+CA GG S +++ C
Sbjct: 95 PAVDWARRLAAIARHVVAVGTCAAYGGVTAASPNLLDACGLAYEGFYPGGALGASFRSRS 154
Query: 149 IVPVDIYVPGCPPTAEALIYGILLL 173
+PV + + GCP + ++LL
Sbjct: 155 GLPV-VNIAGCPTHPNWVTETLMLL 178
>gi|169832081|ref|YP_001718063.1| hydrogenase (NiFe) small subunit HydA [Candidatus Desulforudis
audaxviator MP104C]
gi|169638925|gb|ACA60431.1| hydrogenase (NiFe) small subunit HydA [Candidatus Desulforudis
audaxviator MP104C]
Length = 375
Score = 34.2 bits (77), Expect = 8.6, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 127 GSCANGGGYYHYSYSVVR--GCDRIVPVD---IYVPGCPPTAEALIYGILLL 173
GSCA G + + + VD I VPGCP + ++ + L
Sbjct: 166 GSCAAWGLPFGAHPNPTGSKPVSAV--VDRTVINVPGCPAHPDWILGTLAHL 215
>gi|83311042|ref|YP_421306.1| uptake hydrogenase [Magnetospirillum magneticum AMB-1]
gi|82945883|dbj|BAE50747.1| uptake hydrogenase [Magnetospirillum magneticum AMB-1]
Length = 341
Score = 34.2 bits (77), Expect = 8.7, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 23/88 (26%)
Query: 105 KMASALRRVYDQMPEPRYVISMGSCANGGGYYHYSYSVVR-------GCD---------- 147
M + R+ P+ R+V+++GSCA GG ++ G D
Sbjct: 103 PMKDWIARL---APKARHVVAVGSCAAFGGMPAAGHNPTDARGLQYSGWDPGGALGKAFR 159
Query: 148 --RIVPVDIYVPGCPPTAEALIYGILLL 173
+PV + + GC P +I + L
Sbjct: 160 AGSGLPV-VNIAGCAPHPGWMIETLAAL 186
>gi|111221821|ref|YP_712615.1| uptake hydrogenase small subunit [Frankia alni ACN14a]
gi|111149353|emb|CAJ61041.1| uptake hydrogenase small subunit precursor (Hydrogenlyase)
(Membrane-bound hydrogenase small subunit) [Frankia alni
ACN14a]
Length = 359
Score = 34.2 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 118 PEPRYVISMGSCANGGGYYHYSYSVVR--GCDRIVPVD---------IYVPGCPPTAEAL 166
P VI++G+CA GG + + + G + D + VPGCP +
Sbjct: 134 PRAWAVIAIGTCAAYGGIHAMAGNPTGSMGLLDYLGRDFTSAGNLPIVNVPGCPVQPDDF 193
Query: 167 IYGILLLQ 174
+ + L
Sbjct: 194 METLTWLL 201
>gi|38637755|ref|NP_942729.1| NAD-reducing hydrogenase hydrogenase moiety small subunit
[Ralstonia eutropha H16]
gi|123474|sp|P22319|HOXY_RALEH RecName: Full=NAD-reducing hydrogenase hoxS subunit delta
gi|141949|gb|AAC06142.1| NAD-reducing hydrogenase [Ralstonia eutropha H16]
gi|32527093|gb|AAP85843.1| NAD-reducing hydrogenase hydrogenase moiety small subunit
[Ralstonia eutropha H16]
Length = 209
Score = 34.2 bits (77), Expect = 9.1, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 36/88 (40%)
Query: 122 YVISMGSCANGGGY----------------YHYSYSVVRGCDRIVP-------------- 151
+IS+G+CA GG Y S + V G +VP
Sbjct: 106 ILISVGACAVWGGVPAMRNVFELKDCLAEAYVNSATAVPGAKAVVPFHPDIPRITTKVYP 165
Query: 152 ------VDIYVPGCPPTAEALIYGILLL 173
+D ++PGCPP +A+ + L
Sbjct: 166 CHEVVKMDYFIPGCPPDGDAIFKVLDDL 193
>gi|89267108|emb|CAJ41976.1| guanosine diphosphatase [Ustilago hordei]
Length = 647
Score = 34.2 bits (77), Expect = 9.2, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 67 VEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEPRYVISM 126
E + P + R + P Q V T+ A RR+ + M + V +
Sbjct: 456 PETTRIPSPCFTNGRTKIVLISQPDQKTHANVTMVGTDGGFPACRRLVEVMMDKDAVCTS 515
Query: 127 GSCANGGGYYHYS 139
SC+ GG Y S
Sbjct: 516 KSCSF-GGVYQPS 527
>gi|254381622|ref|ZP_04996986.1| hydrogenase [Streptomyces sp. Mg1]
gi|194340531|gb|EDX21497.1| hydrogenase [Streptomyces sp. Mg1]
Length = 272
Score = 33.8 bits (76), Expect = 9.8, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 23/88 (26%)
Query: 94 DVMIVAGTLTNKMASALRRVYDQMPEPRYVISMGSCANGGGY------------------ 135
D+++V G+++ + R+ + R+++++G+CA GG
Sbjct: 62 DLVLVEGSVSTP--EHVERIRRIRADARHLVTIGACATAGGVQALRNYADVEGYLATVYA 119
Query: 136 ---YHYSYSVVRGCDRIVPVDIYVPGCP 160
Y + + VPVD + GCP
Sbjct: 120 RPEYIETLATSTPVSAHVPVDFELRGCP 147
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.310 0.140 0.433
Lambda K H
0.267 0.0432 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,593,687,857
Number of Sequences: 14124377
Number of extensions: 67146122
Number of successful extensions: 227292
Number of sequences better than 10.0: 3260
Number of HSP's better than 10.0 without gapping: 2591
Number of HSP's successfully gapped in prelim test: 669
Number of HSP's that attempted gapping in prelim test: 222253
Number of HSP's gapped (non-prelim): 3583
length of query: 185
length of database: 4,842,793,630
effective HSP length: 130
effective length of query: 55
effective length of database: 3,006,624,620
effective search space: 165364354100
effective search space used: 165364354100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.7 bits)
S2: 77 (34.2 bits)