BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B
[Candidatus Liberibacter asiaticus str. psy62]
         (185 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780853|ref|YP_003065266.1| NADH dehydrogenase subunit B [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 185

 Score =  385 bits (989), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60
           MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF
Sbjct: 1   MGLTTVNQKIISGQSSCSLEKVDADFSRISSEITHKGFLVTSVDQLVTWARTGSLMWMTF 60

Query: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120
           GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP
Sbjct: 61  GLACCAVEMMQASMPRYDLERFGFAPRASPRQSDVMIVAGTLTNKMASALRRVYDQMPEP 120

Query: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180
           RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV
Sbjct: 121 RYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGILLLQKKIRRV 180

Query: 181 GNVKC 185
           GNVKC
Sbjct: 181 GNVKC 185


>gi|254781062|ref|YP_003065475.1| putative aminotransferase involved in iron-sulfur cluster
           biogenesis [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 406

 Score = 22.7 bits (47), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 155 YVPGCPPTAEALIYGILL 172
           + PG PP ++A+  G+ L
Sbjct: 273 FEPGTPPISQAIALGVAL 290


>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 622

 Score = 21.9 bits (45), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 5   TVNQKIISGQSSCSLEKVD 23
           T+N  II+GQ   S +K++
Sbjct: 84  TINANIITGQIELSAQKIE 102


>gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 383

 Score = 21.9 bits (45), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 2   GLTTVNQKIISGQSSCSLEKVDADFSRISSE 32
           G+  V+    +G+   S+E++ ADF  ISS 
Sbjct: 175 GILVVDAVQAAGRIPLSIEEIKADFLIISSH 205


>gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 189

 Score = 21.6 bits (44), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 158 GCPPTAEALIYGIL-LLQKKIRRVGNVKC 185
           GCP  +E L YG+  +L   +  V +++ 
Sbjct: 160 GCPSASETLKYGVANILNHFVPEVKDIRT 188


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.136    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,268
Number of Sequences: 1233
Number of extensions: 4196
Number of successful extensions: 12
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 185
length of database: 328,796
effective HSP length: 69
effective length of query: 116
effective length of database: 243,719
effective search space: 28271404
effective search space used: 28271404
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 36 (18.5 bits)