HHsearch alignment for GI: 254780854 and conserved domain: COG0852

>COG0852 NuoC NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion].
Probab=100.00  E-value=0  Score=405.65  Aligned_cols=174  Identities=48%  Similarity=0.879  Sum_probs=162.4

Q ss_pred             CCHH-HHHHHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEE
Q ss_conf             9057-999999999861531145798479599998689899999998718789801475132568877778579999966
Q gi|254780854|r    1 MVRK-IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFL   79 (202)
Q Consensus         1 M~~~-L~~L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~Ll   79 (202)
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Lk~~~---f~~l~d~~gvD~~~~~~~FevvYhL~   77 (176)
T COG0852           1 PDDPVLAELLERLLAELSTVIETVVVAEGELTLKVPPDELIDVLKALKDEG---FDHLLDLTGVDYPQETERFEVVYHLL   77 (176)
T ss_pred             CCCHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHH---HHHHHHHHCCCCCCCCCCEEEEEEEE
T ss_conf             961356787776666320004210010016787347889999999974420---78898764565425688579999964


Q ss_pred             ECCCCCEEEEEEEECCCCE-EECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             1575205998212057850-101223302553101121011382735679876778899898787113377898447887
Q gi|254780854|r   80 SPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY  158 (202)
Q Consensus        80 S~~~n~ri~Vk~~v~e~~~-vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG~~evry  158 (202)
T Consensus        78 s~~~~~~v~vkv~~~~~~~~vpSv~~I~~~A~W~ERE~yDmfGI~FeGHP~LrRilm~~~~~GhPLRKDfpl~~~~~~~~  157 (176)
T COG0852          78 SYKDNRRVRVKVRLSEDDPHVPSVTDIWPAANWYEREAYDMFGIVFEGHPDLRRILMPDDWEGHPLRKDFPLRGYVEVRY  157 (176)
T ss_pred             ECCCCCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf             06889789999886898886871577313576266633223125875996621435788878997567768886388341


Q ss_pred             CHHHCEEECCCCEEEEHHH
Q ss_conf             6211513126642202221
Q gi|254780854|r  159 DDKVKKVVYRPVELMQEHR  177 (202)
Q Consensus       159 d~~~k~v~~epv~l~q~~r  177 (202)
T Consensus       158 ~~~~~~~~~~~~~~~~~~~  176 (176)
T COG0852         158 DEEDKKVVYEPVELIFERR  176 (176)
T ss_pred             CHHHCCCCCCCCCCCCCCC
T ss_conf             2120534456400156689