HHsearch alignment for GI: 254780854 and conserved domain: COG0852
>COG0852 NuoC NADH:ubiquinone oxidoreductase 27 kD subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=405.65 Aligned_cols=174 Identities=48% Similarity=0.879 Sum_probs=162.4
Q ss_pred CCHH-HHHHHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEE
Q ss_conf 9057-999999999861531145798479599998689899999998718789801475132568877778579999966
Q gi|254780854|r 1 MVRK-IEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFL 79 (202)
Q Consensus 1 M~~~-L~~L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~Ll 79 (202)
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~Lk~~~---f~~l~d~~gvD~~~~~~~FevvYhL~ 77 (176)
T COG0852 1 PDDPVLAELLERLLAELSTVIETVVVAEGELTLKVPPDELIDVLKALKDEG---FDHLLDLTGVDYPQETERFEVVYHLL 77 (176)
T ss_pred CCCHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEECCHHHHHHHHHHHHHHH---HHHHHHHHCCCCCCCCCCEEEEEEEE
T ss_conf 961356787776666320004210010016787347889999999974420---78898764565425688579999964
Q ss_pred ECCCCCEEEEEEEECCCCE-EECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 1575205998212057850-101223302553101121011382735679876778899898787113377898447887
Q gi|254780854|r 80 SPKYNRRLRVKIAVAEGKS-VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHY 158 (202)
Q Consensus 80 S~~~n~ri~Vk~~v~e~~~-vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG~~evry 158 (202)
T Consensus 78 s~~~~~~v~vkv~~~~~~~~vpSv~~I~~~A~W~ERE~yDmfGI~FeGHP~LrRilm~~~~~GhPLRKDfpl~~~~~~~~ 157 (176)
T COG0852 78 SYKDNRRVRVKVRLSEDDPHVPSVTDIWPAANWYEREAYDMFGIVFEGHPDLRRILMPDDWEGHPLRKDFPLRGYVEVRY 157 (176)
T ss_pred ECCCCCEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 06889789999886898886871577313576266633223125875996621435788878997567768886388341
Q ss_pred CHHHCEEECCCCEEEEHHH
Q ss_conf 6211513126642202221
Q gi|254780854|r 159 DDKVKKVVYRPVELMQEHR 177 (202)
Q Consensus 159 d~~~k~v~~epv~l~q~~r 177 (202)
T Consensus 158 ~~~~~~~~~~~~~~~~~~~ 176 (176)
T COG0852 158 DEEDKKVVYEPVELIFERR 176 (176)
T ss_pred CHHHCCCCCCCCCCCCCCC
T ss_conf 2120534456400156689