HHsearch alignment for GI: 254780854 and conserved domain: PRK06074
>PRK06074 NADH dehydrogenase subunit C; Provisional.
Probab=100.00 E-value=0 Score=510.60 Aligned_cols=188 Identities=52% Similarity=0.990 Sum_probs=182.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 05799999999986153114579847959999868989999999871878980147513256887777857999996615
Q gi|254780854|r 2 VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSP 81 (202)
Q Consensus 2 ~~~L~~L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~LlS~ 81 (202)
T Consensus 1 ~e~l~eL~~~L~~~f~~~I~~~~~~~gelti~V~~~~l~evl~~LKdd~~~~Fd~L~DltaVDy~~~~~RFeVVYhL~S~ 80 (190)
T PRK06074 1 SEKLEELIAYLEAKLPDAIVSVTVAFGELTLEVPAEKILEVLKFLRDDPELRFEQLIDLTGVDYPGREKRFEVVYHLLSV 80 (190)
T ss_pred CHHHHHHHHHHHHHHCHHHHEEEEECCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEC
T ss_conf 96699999999987241211278889927999819999999999855988998705245847268988879999998785
Q ss_pred CCCCEEEEEEEECCC-CEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH
Q ss_conf 752059982120578-5010122330255310112101138273567987677889989878711337789844788762
Q gi|254780854|r 82 KYNRRLRVKIAVAEG-KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDD 160 (202)
Q Consensus 82 ~~n~ri~Vk~~v~e~-~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG~~evryd~ 160 (202)
T Consensus 81 ~~~~ri~vk~~~~~~~p~ipSit~iw~~AnW~ERE~yDmfGI~F~gHPdLrRill~~~~~GhPLRKDyPl~g~~~~~y~~ 160 (190)
T PRK06074 81 KHNQRLRVKVRAPEDFPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDE 160 (190)
T ss_pred CCCCEEEEEECCCCCCCCCCCCHHEEECCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECH
T ss_conf 68988999953677899798432123179745555245409423799986131589898778716774688731451074
Q ss_pred HHCEEECCCCEEEEHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 115131266422022212766563234533457533210
Q gi|254780854|r 161 KVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKD 199 (202)
Q Consensus 161 ~~k~v~~epv~l~q~~r~f~~~spwe~~~~~~~~~~~~~ 199 (202)
T Consensus 161 ~~~~v~~~~~~~----------~~~~~~~~v~~~~~~~~ 189 (190)
T PRK06074 161 ELKRVVYEPVTL----------SPWEGTPYVLPGDEKAG 189 (190)
T ss_pred HHCEEEECCCCC----------CCCCCCCCCCCCCCCCC
T ss_conf 347585126645----------73258884676866678