HHsearch alignment for GI: 254780854 and conserved domain: PRK06074

>PRK06074 NADH dehydrogenase subunit C; Provisional.
Probab=100.00  E-value=0  Score=510.60  Aligned_cols=188  Identities=52%  Similarity=0.990  Sum_probs=182.8

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEEC
Q ss_conf             05799999999986153114579847959999868989999999871878980147513256887777857999996615
Q gi|254780854|r    2 VRKIEDLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLSP   81 (202)
Q Consensus         2 ~~~L~~L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~LlS~   81 (202)
T Consensus         1 ~e~l~eL~~~L~~~f~~~I~~~~~~~gelti~V~~~~l~evl~~LKdd~~~~Fd~L~DltaVDy~~~~~RFeVVYhL~S~   80 (190)
T PRK06074          1 SEKLEELIAYLEAKLPDAIVSVTVAFGELTLEVPAEKILEVLKFLRDDPELRFEQLIDLTGVDYPGREKRFEVVYHLLSV   80 (190)
T ss_pred             CHHHHHHHHHHHHHHCHHHHEEEEECCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEC
T ss_conf             96699999999987241211278889927999819999999999855988998705245847268988879999998785


Q ss_pred             CCCCEEEEEEEECCC-CEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECH
Q ss_conf             752059982120578-5010122330255310112101138273567987677889989878711337789844788762
Q gi|254780854|r   82 KYNRRLRVKIAVAEG-KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPVTGFVELHYDD  160 (202)
Q Consensus        82 ~~n~ri~Vk~~v~e~-~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPltG~~evryd~  160 (202)
T Consensus        81 ~~~~ri~vk~~~~~~~p~ipSit~iw~~AnW~ERE~yDmfGI~F~gHPdLrRill~~~~~GhPLRKDyPl~g~~~~~y~~  160 (190)
T PRK06074         81 KHNQRLRVKVRAPEDFPVVPSVVDIWPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFPLTGYVEVRYDE  160 (190)
T ss_pred             CCCCEEEEEECCCCCCCCCCCCHHEEECCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECH
T ss_conf             68988999953677899798432123179745555245409423799986131589898778716774688731451074


Q ss_pred             HHCEEECCCCEEEEHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             115131266422022212766563234533457533210
Q gi|254780854|r  161 KVKKVVYRPVELMQEHRDYDFLSPWEGVNSLFAKEDSKD  199 (202)
Q Consensus       161 ~~k~v~~epv~l~q~~r~f~~~spwe~~~~~~~~~~~~~  199 (202)
T Consensus       161 ~~~~v~~~~~~~----------~~~~~~~~v~~~~~~~~  189 (190)
T PRK06074        161 ELKRVVYEPVTL----------SPWEGTPYVLPGDEKAG  189 (190)
T ss_pred             HHCEEEECCCCC----------CCCCCCCCCCCCCCCCC
T ss_conf             347585126645----------73258884676866678