HHsearch alignment for GI: 254780854 and conserved domain: PRK07735
>PRK07735 NADH dehydrogenase subunit C; Validated.
Probab=100.00 E-value=2.8e-41 Score=272.40 Aligned_cols=141 Identities=30% Similarity=0.516 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHCCCCEEE-EE---EECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEEEEEEE
Q ss_conf 999999999861531145-79---84795999986898999999987187898014751325688777785799999661
Q gi|254780854|r 5 IEDLGDYIVNSFSGSVRF-AV---NSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVVYHFLS 80 (202)
Q Consensus 5 L~~L~~~L~~~l~~~I~~-~~---~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVvY~LlS 80 (202)
T Consensus 268 L~~yv~vi~e~~g~~vl~d~YIN~LskdvPtlvv~~e~yy~v~E~lr~hE~l~fdYlSeLh~tDf~---thmEvyvHl~S 344 (420)
T PRK07735 268 LNQYVEVIKEKLGEDALVDAYINKLSKDVPTLVVEPEKYYEVMELLRFHEGLAFDYMSELHATDFV---THMEVYVHLFS 344 (420)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHH---HHEEEEEEEEE
T ss_conf 999999999870147899999988606688157545879999999875031024788763030024---11056787775
Q ss_pred CCCCCEEEEEEEECC-CCEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 575205998212057-85010122330255310112101138273567987677889989878711337
Q gi|254780854|r 81 PKYNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDF 148 (202)
Q Consensus 81 ~~~n~ri~Vk~~v~e-~~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDF 148 (202)
T Consensus 345 y~~rq~vavKVK~dRe~p~v~Sv~plW~gAnWpErEayDLLGi~F~GHpnL~RI~mpddWvGhPLRKDY 413 (420)
T PRK07735 345 YGKKQSVAVKVKLDREAPQVESVTPLWKGADWPEREAYDLLGIVFKGHPNLSRILMPDDWVGHPLRKDY 413 (420)
T ss_pred CCCCCEEEEEEECCCCCCCCCCHHCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 278861689863145676543100135789983455665402112699880001166444578433557