HHsearch alignment for GI: 254780854 and conserved domain: TIGR01961
>TIGR01961 NuoC_fam NADH (or F420H2) dehydrogenase, subunit C; InterPro: IPR010218 This entry describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This entry excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and Synechocystis.; GO: 0016651 oxidoreductase activity acting on NADH or NADPH, 0006118 electron transport.
Probab=100.00 E-value=0 Score=398.18 Aligned_cols=123 Identities=50% Similarity=0.987 Sum_probs=118.0
Q ss_pred EEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCC-CCC-----CCCCEEEEEEEEECCCCC----EEEEEEEECCCCE-
Q ss_conf 99998689899999998718789801475132568-877-----778579999966157520----5998212057850-
Q gi|254780854|r 30 LSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVD-FLS-----RSNRFDVVYHFLSPKYNR----RLRVKIAVAEGKS- 98 (202)
Q Consensus 30 l~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVD-yp~-----~~~RFeVvY~LlS~~~n~----ri~Vk~~v~e~~~- 98 (202)
T Consensus 1 ~~v~~~~~~~~~v~~~Lk~d~~l~F~~L~d~~GVD~yp~~~~~l~~~~fevvY~L~S~~~~~~~~~~~~~Kv~~~~~d~~ 80 (136)
T TIGR01961 1 LVVEIKKEQLLEVLTFLKDDPALGFELLSDVSGVDEYPKKERELREKRFEVVYHLLSIKHNQKRKSRIRIKVRLSEDDPN 80 (136)
T ss_pred CEEEECHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCC
T ss_conf 91563465689998740022216801566655310012578888876630566652363411147258999873789898
Q ss_pred -EECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf -1012233025531011210113827356798767788998987-87113377898
Q gi|254780854|r 99 -VPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEG-HPLRKDFPVTG 152 (202)
Q Consensus 99 -vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feG-hPLRKDFPltG 152 (202)
T Consensus 81 ~vPS~~~~~~~AnW~ERE~YDmyGI~F~gHPdLrRil~P~df~G~hPLRKDyPl~g 136 (136)
T TIGR01961 81 HVPSVTSVFKTANWYERETYDMYGIVFDGHPDLRRILMPDDFEGVHPLRKDYPLTG 136 (136)
T ss_pred CCCEEEECCCCCCCCCCEEEEEECCEECCCCCCCEEECCCCCEECCCCCCCCCCCC
T ss_conf 68701421467872220345431325737899753226888883257755677889