Query gi|254780854|ref|YP_003065267.1| NADH dehydrogenase subunit C [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 202
No_of_seqs 224 out of 1237
Neff 5.9
Searched_HMMs 33803
Date Wed Jun 1 18:14:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780854.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3i9v_5 NADH-quinone oxidoredu 100.0 6.8E-40 2E-44 263.6 7.3 130 7-139 2-141 (141)
2 >1yq9_H Periplasmic [NIFE] hyd 41.7 0.52 1.5E-05 26.8 -5.6 19 143-161 292-310 (437)
3 >1es6_A Matrix protein VP40; b 35.0 12 0.00034 18.6 0.5 18 121-141 12-29 (62)
4 >2z1k_A (NEO)pullulanase; hydr 31.2 18 0.00054 17.4 1.0 14 140-153 29-42 (81)
5 >3lhl_A Putative agmatinase; p 30.0 26 0.00076 16.5 1.6 33 115-147 110-144 (287)
6 >2aeb_A Arginase 1; hydrolase, 23.8 36 0.0011 15.6 1.4 42 106-147 105-148 (322)
7 >2p8u_A Hydroxymethylglutaryl- 23.1 30 0.00089 16.1 0.9 27 96-123 4-30 (35)
8 >2mad_H Methylamine dehydrogen 22.5 57 0.0017 14.4 2.9 42 69-110 13-55 (89)
9 >1w2i_A Acylphosphatase; hydro 21.7 59 0.0017 14.3 4.7 60 15-75 31-90 (91)
10 >3ech_C 25-MER fragent of prot 21.5 16 0.00047 17.8 -0.8 13 113-125 13-25 (26)
11 >2f82_A HMG-COA synthase; HMGS 21.5 33 0.00098 15.8 0.8 20 101-121 11-30 (36)
12 >2a0m_A Arginase superfamily p 20.5 54 0.0016 14.5 1.8 31 118-148 138-170 (316)
13 >1gq6_A Proclavaminate amidino 20.3 51 0.0015 14.7 1.6 37 116-152 134-172 (313)
14 >2fhm_A Probable acylphosphata 20.3 63 0.0019 14.1 4.7 46 29-76 43-90 (91)
No 1
>>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_5* 3iam_5* 3ias_5* (5:1-141)
Probab=100.00 E-value=6.8e-40 Score=263.59 Aligned_cols=130 Identities=30% Similarity=0.542 Sum_probs=120.0
Q ss_pred HHHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC----CCEEEEEEEEECC
Q ss_conf 999999986153114579847959999868989999999871878980147513256887777----8579999966157
Q gi|254780854|r 7 DLGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRS----NRFDVVYHFLSPK 82 (202)
Q Consensus 7 ~L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~----~RFeVvY~LlS~~ 82 (202)
++.+.|++.+++.+.......+++++.|+++.+.+++.+||+. +|.+|++|||+||+++. .+|+++|||.|++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~~v~i~~~~l~~v~~~Lk~~---~~~~l~~i~~~D~~~~~~~~~~~f~vvY~l~s~~ 78 (141)
T 3i9v_5 2 RLERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKAM---GFNFLADIVGLDYLTYPDPRPERFAVVYELVSLP 78 (141)
T ss_dssp TTHHHHHHHHHTTCCCCBCTTSCBEEECCHHHHHHHHHHHHHT---TCCCEEEEEEEECTTCSSCCSSSEEEEEEECCCT
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHC---CCCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEE
T ss_conf 5899999877426721103588289998699999999999867---9982646887767876777764179999998654
Q ss_pred -----CCCEEEEEEEECC-CCEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCC
Q ss_conf -----5205998212057-85010122330255310112101138273567987677889989
Q gi|254780854|r 83 -----YNRRLRVKIAVAE-GKSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGF 139 (202)
Q Consensus 83 -----~n~ri~Vk~~v~e-~~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~f 139 (202)
.|.+|+||+.+++ ++.+|||++|||+|+|+|||+||||||.|+|||||||||+|+||
T Consensus 79 ~~~~~~~~~v~v~~~v~~~~p~ipSi~~i~~~A~w~ERE~~DmfGI~f~ghPdlrrlll~ddf 141 (141)
T 3i9v_5 79 GWKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDL 141 (141)
T ss_dssp TSSSCCCCCEEEEEEECSSCCBCCCCTTTCSTHHHHHHHHHHTSCCBCTTCSCCCCCSSCTTC
T ss_pred CCCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCEECCCEECCEEECCCCCCCCCCCCCCC
T ss_conf 256777508999861365553010001308275113301537438797898888463579899
No 2
>>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} (H:56-492)
Probab=41.69 E-value=0.52 Score=26.83 Aligned_cols=19 Identities=5% Similarity=0.046 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCEEEEECHH
Q ss_conf 7113377898447887621
Q gi|254780854|r 143 PLRKDFPVTGFVELHYDDK 161 (202)
Q Consensus 143 PLRKDFPltG~~evryd~~ 161 (202)
.+.++..-+|-...||+..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~ 310 (437)
T 1yq9_H 292 EFHGEDRYSWMKAPRYKGE 310 (437)
T ss_dssp CTTGGGCCCSSCEEEETTB
T ss_pred CCCCCCCCHHHHHHHHCCC
T ss_conf 3444466413321343677
No 3
>>1es6_A Matrix protein VP40; beta sandwich, anti-parallel strands, beta sheet, helix, viral protein; 2.00A {Ebola virus SP} (A:165-196,A:267-296)
Probab=35.04 E-value=12 Score=18.58 Aligned_cols=18 Identities=56% Similarity=0.863 Sum_probs=12.7
Q ss_pred CCEECCCCCCCCCCCCCCCCC
Q ss_conf 827356798767788998987
Q gi|254780854|r 121 GIFFEGHPDLRRILTDYGFEG 141 (202)
Q Consensus 121 GI~F~gHPdlRRiL~d~~feG 141 (202)
||.| ||.||.||++ |-.|
T Consensus 12 gisf--hpklrpillp-gktg 29 (62)
T 1es6_A 12 GISF--HPKLRPILLP-NKSG 29 (62)
T ss_dssp EEEC--CTTSCCEECC-CC--
T ss_pred CCCC--CCCCCCEECC-CCCC
T ss_conf 5003--8898864357-7567
No 4
>>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GLC; 2.30A {Thermus thermophilus} (A:395-475)
Probab=31.22 E-value=18 Score=17.40 Aligned_cols=14 Identities=50% Similarity=1.139 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 87871133778984
Q gi|254780854|r 140 EGHPLRKDFPVTGF 153 (202)
Q Consensus 140 eGhPLRKDFPltG~ 153 (202)
.-+|.|-||||-|-
T Consensus 29 ~p~P~r~~~PLHG~ 42 (81)
T 2z1k_A 29 SPHPFRQDFPLHGV 42 (81)
T ss_dssp SSSCEECCSBCTTS
T ss_pred CCCCEEEEEECCCC
T ss_conf 89976999753441
No 5
>>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.30A {Clostridium difficile} (A:)
Probab=29.99 E-value=26 Score=16.51 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCHHHCC-CEECCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf 2101138-273567987677889989-87871133
Q gi|254780854|r 115 EVWDMYG-IFFEGHPDLRRILTDYGF-EGHPLRKD 147 (202)
Q Consensus 115 E~~DmfG-I~F~gHPdlRRiL~d~~f-eGhPLRKD 147 (202)
+.+.-+| |.|+.|+|+|.-.++.++ -|.|||.-
T Consensus 110 ~~~~~~~vI~~DAH~Dl~~~~~~~~~~~g~~~~~~ 144 (287)
T 3lhl_A 110 EKYNDIYVIHFDAHTDLREEYNNSKNSHATVIKRI 144 (287)
T ss_dssp HHCSSEEEEEECSBCCCCSCBTTBSSSTTTHHHHH
T ss_pred HHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 76797079997788874545579755304789999
No 6
>>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid inhibitor, perfectly twinned crystal; HET: AB5; 1.29A {Homo sapiens} (A:)
Probab=23.78 E-value=36 Score=15.57 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=26.1
Q ss_pred EECCCCEECCCHHHCCCEECCCCCCCC-CCCCCCC-CCCCCCCC
Q ss_conf 025531011210113827356798767-7889989-87871133
Q gi|254780854|r 106 YPGADWFEREVWDMYGIFFEGHPDLRR-ILTDYGF-EGHPLRKD 147 (202)
Q Consensus 106 ~p~A~W~ERE~~DmfGI~F~gHPdlRR-iL~d~~f-eGhPLRKD 147 (202)
|+.+.+.-|---+.-=|.|+.|+|++- .-++.++ .|.|||+-
T Consensus 105 ~~~~~al~~~~~~igvI~iDAH~D~~~p~~~~~~~~~G~~l~~~ 148 (322)
T 2aeb_A 105 IGSISGHARVHPDLGVIWVDAHTDINTPLTTTSGNLHGQPVSFL 148 (322)
T ss_dssp HHHHHHHHHHCTTCEEEEESSSCCCCCTTTCSSCCGGGCHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 77788887406774499861357667887787777577599999
No 7
>>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural genomics, structural genomics consortium; HET: COA; 2.00A {Homo sapiens} (A:444-478)
Probab=23.08 E-value=30 Score=16.09 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=20.6
Q ss_pred CCEEECCCCCEECCCCEECCCHHHCCCE
Q ss_conf 8501012233025531011210113827
Q gi|254780854|r 96 GKSVPSIVGIYPGADWFEREVWDMYGIF 123 (202)
Q Consensus 96 ~~~vpSi~~i~p~A~W~ERE~~DmfGI~ 123 (202)
-.|..|+..||||+ ||=-+|=|||-=.
T Consensus 4 y~P~gs~~~L~PGT-yYL~~VDd~~RR~ 30 (35)
T 2p8u_A 4 YIPQGSIDSLFEGT-WYLVRVDEKHRRT 30 (35)
T ss_dssp BCCCSCSTTSCTTC-EEEEEECTTSCEE
T ss_pred CCCCCCCCCCCCCC-EEEEEECCCCEEE
T ss_conf 76578613257776-7965764786586
No 8
>>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} (H:123-211)
Probab=22.50 E-value=57 Score=14.40 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=24.6
Q ss_pred CCCEEEEEEEEECCCCCEEEEEE-EECCCCEEECCCCCEECCC
Q ss_conf 78579999966157520599821-2057850101223302553
Q gi|254780854|r 69 SNRFDVVYHFLSPKYNRRLRVKI-AVAEGKSVPSIVGIYPGAD 110 (202)
Q Consensus 69 ~~RFeVvY~LlS~~~n~ri~Vk~-~v~e~~~vpSi~~i~p~A~ 110 (202)
+.||-+||++..-.-=.-+-+.. .+...-++|....|||+++
T Consensus 13 dgk~llv~n~tPa~SV~VVD~~a~k~~~ei~~pgC~~iyP~~~ 55 (89)
T 2mad_H 13 NNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAP 55 (89)
T ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEECCC
T ss_conf 9981999942899779998537851888706775699960799
No 9
>>1w2i_A Acylphosphatase; hydrolase, thermophilic, stability, amyloid; 1.5A {Pyrococcus horikoshii} (A:)
Probab=21.73 E-value=59 Score=14.30 Aligned_cols=60 Identities=18% Similarity=0.170 Sum_probs=35.7
Q ss_pred HCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCEEEE
Q ss_conf 6153114579847959999868989999999871878980147513256887777857999
Q gi|254780854|r 15 SFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLSRSNRFDVV 75 (202)
Q Consensus 15 ~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~~~~RFeVv 75 (202)
.+.+.|.+.....=++.+.-+++.+.+++..|+..+...--.-+..+-.+++.. ..|+++
T Consensus 31 gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~gp~~a~V~~i~~~~~~~~~~-~~F~I~ 90 (91)
T 1w2i_A 31 GVNGWVRNLPDGSVEAVLEGDEERVEALIGWAHQGPPLARVTRVEVKWEQPKGE-KGFRIV 90 (91)
T ss_dssp TCEEEEEECTTSCEEEEEEEEHHHHHHHHHHTTTCSTTCEEEEEEEEEECCCCC-CSEEEC
T ss_pred CCEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCC-CCCEEC
T ss_conf 973799999998599999739999999999996698970999999998788889-983985
No 10
>>3ech_C 25-MER fragent of protein ARMR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} (C:)
Probab=21.52 E-value=16 Score=17.79 Aligned_cols=13 Identities=46% Similarity=1.119 Sum_probs=10.0
Q ss_pred ECCCHHHCCCEEC
Q ss_conf 1121011382735
Q gi|254780854|r 113 EREVWDMYGIFFE 125 (202)
Q Consensus 113 ERE~~DmfGI~F~ 125 (202)
-|.+||+||-.|-
T Consensus 13 rrnawdlygehfy 25 (26)
T 3ech_C 13 RRNAWDLYGEHFY 25 (26)
T ss_dssp HHTHHHHHHSCCC
T ss_pred HHHHHHHHHHHCC
T ss_conf 8608987252314
No 11
>>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* (A:415-450)
Probab=21.50 E-value=33 Score=15.83 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=16.5
Q ss_pred CCCCCEECCCCEECCCHHHCC
Q ss_conf 122330255310112101138
Q gi|254780854|r 101 SIVGIYPGADWFEREVWDMYG 121 (202)
Q Consensus 101 Si~~i~p~A~W~ERE~~DmfG 121 (202)
|+..||||+ ||=-+|=|||-
T Consensus 11 s~~~L~PGT-yYL~~VDd~~R 30 (36)
T 2f82_A 11 ILDLLAPGT-YYLKEVDSLYR 30 (36)
T ss_dssp TGGGSCTTC-EEEEEECTTSC
T ss_pred CCCCCCCCC-EEEEEECCCCE
T ss_conf 513356654-78503366855
No 12
>>2a0m_A Arginase superfamily protein; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.60A {Trypanosoma cruzi} (A:)
Probab=20.52 E-value=54 Score=14.51 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=21.8
Q ss_pred HHCC-CEECCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 1138-27356798767788-9989878711337
Q gi|254780854|r 118 DMYG-IFFEGHPDLRRILT-DYGFEGHPLRKDF 148 (202)
Q Consensus 118 DmfG-I~F~gHPdlRRiL~-d~~feGhPLRKDF 148 (202)
+.+| |.|+.|+|+|.--+ ..+-.|.|||.-.
T Consensus 138 ~~~~vI~~DAH~D~~~~~~~~~~~~g~~~~~~~ 170 (316)
T 2a0m_A 138 GDVGVINVDSHLDVRPPLQDGRVHSGTPFRQLL 170 (316)
T ss_dssp TCCEEEEECSSCCCCCCCTTSCCCTTCHHHHHH
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 765499834432436676788655774011101
No 13
>>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibiotic; 1.75A {Streptomyces clavuligerus} (A:)
Probab=20.31 E-value=51 Score=14.66 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=24.5
Q ss_pred CHHHCC-CEECCCCCCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 101138-273567987677889989-8787113377898
Q gi|254780854|r 116 VWDMYG-IFFEGHPDLRRILTDYGF-EGHPLRKDFPVTG 152 (202)
Q Consensus 116 ~~DmfG-I~F~gHPdlRRiL~d~~f-eGhPLRKDFPltG 152 (202)
.+.-+| |.|+.|+|++.-..+.++ .|.|++.-.-..+
T Consensus 134 ~~~~~gvI~iDAH~Dl~~~~~~~~~~~g~~~~~~~~~~~ 172 (313)
T 1gq6_A 134 QHGPLAVVHLDAHSDTNPAFYGGRYHHGTPFRHGIDEKL 172 (313)
T ss_dssp HHSSEEEEEECSSCCCCCCBTTBTTCTTCHHHHHHHTTS
T ss_pred HCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 358735999723447253568999988668788764367
No 14
>>2fhm_A Probable acylphosphatase; hydrolase; NMR {Bacillus subtilis} PDB: 2hlt_A 2hlu_A 3br8_A (A:)
Probab=20.27 E-value=63 Score=14.12 Aligned_cols=46 Identities=22% Similarity=0.369 Sum_probs=30.1
Q ss_pred CEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCC--CCCCCCCCEEEEE
Q ss_conf 59999868989999999871878980147513256--8877778579999
Q gi|254780854|r 29 ELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGV--DFLSRSNRFDVVY 76 (202)
Q Consensus 29 el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaV--Dyp~~~~RFeVvY 76 (202)
++.+.-+++.+..+++.|+..+. ......+..- ++......|++.|
T Consensus 43 ei~~qG~~~~i~~f~~~l~~gp~--~a~I~~i~~~~~~~~~~~~~F~I~~ 90 (91)
T 2fhm_A 43 EILAEGPENALQSFVEAVKNGSP--FSKVTDISVTESRSLEGHHRFSIVY 90 (91)
T ss_dssp EEEEEECHHHHHHHHHHHHTTCS--SSEEEEEEEEEECCCCCCCSEEECC
T ss_pred EEEEECCHHHHHHHHHHHHHCCC--CCEEEEEEEEECCCCCCCCCEEEEE
T ss_conf 99998499999999999975999--8789999999868888999849935
Done!