HHsearch results for GI: 254780854 and protein with PDBid: 3i9v_5
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_5* 3iam_5* 3ias_5* 3m9s_5*
Probab=100.00 E-value=0 Score=406.29 Aligned_cols=177 Identities=32% Similarity=0.554 Sum_probs=157.4
Q ss_pred HHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC----CCCCEEEEEEEEECC-
Q ss_conf 999999861531145798479599998689899999998718789801475132568877----778579999966157-
Q gi|254780854|r 8 LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLSPK- 82 (202)
Q Consensus 8 L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~----~~~RFeVvY~LlS~~- 82 (202)
|.+.|++.+...+.......|+++|.|+++++.+++++||+ ++|++|+|||||||++ +++||+|||||+|++
T Consensus 3 le~~l~e~~~~~~~~e~~~~g~l~i~V~~e~l~~v~~~Lk~---~gf~~L~dit~vD~~~~~~~~~~rf~vvY~l~S~~~ 79 (207)
T 3i9v_5 3 LERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPG 79 (207)
T ss_dssp THHHHHHHHHTTCCCCBCTTSCBEEECCHHHHHHHHHHHHH---TTCCCEEEEEEEECTTCSSCCSSSEEEEEEECCCTT
T ss_pred HHHHHHHHHHCCCCEEECCCCCEEEEECHHHHHHHHHHHHH---CCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCC
T ss_conf 89999986643672002458838999839999999999986---899928788848278776787875899999744655
Q ss_pred ----CCCEEEEEEEECCC-CEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC----CCC
Q ss_conf ----52059982120578-501012233025531011210113827356798767788998987871133778----984
Q gi|254780854|r 83 ----YNRRLRVKIAVAEG-KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPV----TGF 153 (202)
Q Consensus 83 ----~n~ri~Vk~~v~e~-~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPl----tG~ 153 (202)
.|.||+||+.++++ +.||||++|||||||+|||+||||||.|+|||||||||+|++|+|||||||||| |||
T Consensus 80 ~~~~~~~rv~vk~~v~~~~p~ipSi~~i~p~A~w~ERE~~DmfGi~f~ghpdlrril~~~~~~g~PLRKDfpl~~~~~~~ 159 (207)
T 3i9v_5 80 WKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPTLF 159 (207)
T ss_dssp SSSCCCCCEEEEEEECSSCCBCCCCTTTCSTHHHHHHHHHHTSCCBCTTCSCCCCCSSCTTCCSCTTSTTSCCCCCCEEC
T ss_pred CCCCCCEEEEEEEECCCCCCCCCCEECCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 66677608999984676567667710305799812322026127676799998454588899989877674688866652
Q ss_pred EEEEE----------CHHHCEEECCCCEEEEHHHCCCCCCCCCCCCCCC
Q ss_conf 47887----------6211513126642202221276656323453345
Q gi|254780854|r 154 VELHY----------DDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLF 192 (202)
Q Consensus 154 ~evry----------d~~~k~v~~epv~l~q~~r~f~~~spwe~~~~~~ 192 (202)
+|+|| +..+++|+|+|+.+.|+||+ +|+|++++.
T Consensus 160 ~e~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~r~-----~~~~~~~~~ 203 (207)
T 3i9v_5 160 REGRYIIPAEFRAALTGKDPGLTFYKGGSRKGYRS-----LWADLKKAR 203 (207)
T ss_dssp TTSCEECGGGTCCSCCSSCCCSSSCCCGGGSCCCC-----CC-------
T ss_pred EEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCC-----HHCCCHHHH
T ss_conf 46675586424444456565411301553635304-----111601320