HHsearch results for GI: 254780854 and protein with PDBid: 3i9v_5

>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_5* 3iam_5* 3ias_5* 3m9s_5*
Probab=100.00  E-value=0  Score=406.29  Aligned_cols=177  Identities=32%  Similarity=0.554  Sum_probs=157.4

Q ss_pred             HHHHHHHHCCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC----CCCCEEEEEEEEECC-
Q ss_conf             999999861531145798479599998689899999998718789801475132568877----778579999966157-
Q gi|254780854|r    8 LGDYIVNSFSGSVRFAVNSVGELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCGVDFLS----RSNRFDVVYHFLSPK-   82 (202)
Q Consensus         8 L~~~L~~~l~~~I~~~~~~~~el~i~V~~~~l~~vl~~LKdd~~~~F~~LiDItaVDyp~----~~~RFeVvY~LlS~~-   82 (202)
                      |.+.|++.+...+.......|+++|.|+++++.+++++||+   ++|++|+|||||||++    +++||+|||||+|++ 
T Consensus         3 le~~l~e~~~~~~~~e~~~~g~l~i~V~~e~l~~v~~~Lk~---~gf~~L~dit~vD~~~~~~~~~~rf~vvY~l~S~~~   79 (207)
T 3i9v_5            3 LERVLEEARAKGYPIEDNGLGNLWVVLPRERFKEEMAHYKA---MGFNFLADIVGLDYLTYPDPRPERFAVVYELVSLPG   79 (207)
T ss_dssp             THHHHHHHHHTTCCCCBCTTSCBEEECCHHHHHHHHHHHHH---TTCCCEEEEEEEECTTCSSCCSSSEEEEEEECCCTT
T ss_pred             HHHHHHHHHHCCCCEEECCCCCEEEEECHHHHHHHHHHHHH---CCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCC
T ss_conf             89999986643672002458838999839999999999986---899928788848278776787875899999744655


Q ss_pred             ----CCCEEEEEEEECCC-CEEECCCCCEECCCCEECCCHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC----CCC
Q ss_conf             ----52059982120578-501012233025531011210113827356798767788998987871133778----984
Q gi|254780854|r   83 ----YNRRLRVKIAVAEG-KSVPSIVGIYPGADWFEREVWDMYGIFFEGHPDLRRILTDYGFEGHPLRKDFPV----TGF  153 (202)
Q Consensus        83 ----~n~ri~Vk~~v~e~-~~vpSi~~i~p~A~W~ERE~~DmfGI~F~gHPdlRRiL~d~~feGhPLRKDFPl----tG~  153 (202)
                          .|.||+||+.++++ +.||||++|||||||+|||+||||||.|+|||||||||+|++|+||||||||||    |||
T Consensus        80 ~~~~~~~rv~vk~~v~~~~p~ipSi~~i~p~A~w~ERE~~DmfGi~f~ghpdlrril~~~~~~g~PLRKDfpl~~~~~~~  159 (207)
T 3i9v_5           80 WKDGDGSRFFVRVYVPEEDPRLPTVTDLWGSANFLEREVYDLFGIVFEGHPDLRKILTPEDLEGHPLRKDYPLGETPTLF  159 (207)
T ss_dssp             SSSCCCCCEEEEEEECSSCCBCCCCTTTCSTHHHHHHHHHHTSCCBCTTCSCCCCCSSCTTCCSCTTSTTSCCCCCCEEC
T ss_pred             CCCCCCEEEEEEEECCCCCCCCCCEECCCCCCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             66677608999984676567667710305799812322026127676799998454588899989877674688866652


Q ss_pred             EEEEE----------CHHHCEEECCCCEEEEHHHCCCCCCCCCCCCCCC
Q ss_conf             47887----------6211513126642202221276656323453345
Q gi|254780854|r  154 VELHY----------DDKVKKVVYRPVELMQEHRDYDFLSPWEGVNSLF  192 (202)
Q Consensus       154 ~evry----------d~~~k~v~~epv~l~q~~r~f~~~spwe~~~~~~  192 (202)
                      +|+||          +..+++|+|+|+.+.|+||+     +|+|++++.
T Consensus       160 ~e~~~~~p~~~r~~~~~~~~~~~~~~~~~~~~~r~-----~~~~~~~~~  203 (207)
T 3i9v_5          160 REGRYIIPAEFRAALTGKDPGLTFYKGGSRKGYRS-----LWADLKKAR  203 (207)
T ss_dssp             TTSCEECGGGTCCSCCSSCCCSSSCCCGGGSCCCC-----CC-------
T ss_pred             EEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCC-----HHCCCHHHH
T ss_conf             46675586424444456565411301553635304-----111601320